AlfalfaGEDB | Msa1365010

M. sativa cultivar zhongmu-4 / Msa1365010

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365010	XP_003603927.1	81.182	457	62	9	1	453	1	437	0.0	675

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365010	G7J729	81.182	457	62	9	1	453	1	437	0.0	675

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TFs/TRs:

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Gene ID	Type	Classification
Msa1365010	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1365010	Msa1417640	0.827049	1.938898e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365010	MtrunA17_Chr3g0144601	81.182	457	62	9	1	453	1	437	0.0	675
Msa1365010	MtrunA17_Chr3g0145531	81.182	457	62	9	1	453	1	437	0.0	667
Msa1365010	MtrunA17_Chr3g0082361	79.167	120	24	1	195	314	56	174	8.42e-59	191
Msa1365010	MtrunA17_Chr3g0107471	32.824	262	119	5	217	449	387	620	6.99e-31	125
Msa1365010	MtrunA17_Chr3g0107471	33.645	214	112	9	6	215	8	195	1.17e-17	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365010	AT5G58340.2	26.509	381	241	15	90	447	81	445	1.70e-13	72.8
Msa1365010	AT5G58340.1	26.509	381	241	15	90	447	81	445	1.70e-13	72.8
Msa1365010	AT1G15720.1	28.689	366	193	16	90	447	81	386	1.02e-12	70.1

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Find 129 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACTTCTAATTGATT+GGG	0.433610	tig0018197:-64366	Msa1365010:CDS
AAAATGGAGTCAATGGGAAG+AGG	0.556320	tig0018197:-62487	Msa1365010:CDS
AAAGACAATGGAAGGCTTAA+AGG	0.299896	tig0018197:-63469	Msa1365010:CDS
AAAGGAATTTGAAAATGGAA+AGG	0.559315	tig0018197:-64595	Msa1365010:exon
AACGCAATATCAGACACTAC+TGG	0.532623	tig0018197:+61710	None:intergenic
AACTCGACAAAGACAATGGA+AGG	0.587275	tig0018197:-63477	Msa1365010:CDS
AAGAGAAAGGAATTTGAAAA+TGG	0.305804	tig0018197:-64600	Msa1365010:exon
AAGTACATACAGTTTAATTC+CGG	0.506549	tig0018197:+62452	None:intergenic
AATAAGTTAGATACATCTTG+AGG	0.553492	tig0018197:+61632	None:intergenic
AATGGCTCGCTGCTTTATCA+AGG	0.544070	tig0018197:+61587	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAGAGAGTGAGCATATTA+AGG	-	tig0018197:61783-61802	Msa1365010:three_prime_UTR	30.0%
TAACTCCAAAATTGAGATTC+TGG	-	tig0018197:62166-62185	Msa1365010:intron	30.0%
AAAAAGTTGAACCTCTTGAA+TGG	+	tig0018197:62271-62290	None:intergenic	30.0%
ACAACAACAACAGAAAAAAG+GGG	+	tig0018197:62386-62405	None:intergenic	30.0%
CAACAACAACAACAGAAAAA+AGG	+	tig0018197:62388-62407	None:intergenic	30.0%
TTCACTTAAATGCAATTCTG+TGG	-	tig0018197:62967-62986	Msa1365010:intron	30.0%
TCTGGCATACAAATAGAATT+GGG	+	tig0018197:63022-63041	None:intergenic	30.0%
CCTCATCATTGTTAACATTT+AGG	+	tig0018197:63141-63160	None:intergenic	30.0%
CCTAAATGTTAACAATGATG+AGG	-	tig0018197:63138-63157	Msa1365010:CDS	30.0%
ATGATGAACATCACTTTGAT+GGG	+	tig0018197:63185-63204	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018197	gene	61594	64739	61594	ID=Msa1365010;Name=Msa1365010
tig0018197	mRNA	61594	64739	61594	ID=Msa1365010-mRNA-1;Parent=Msa1365010;Name=Msa1365010-mRNA-1;_AED=0.19;_eAED=0.19;_QI=136\|1\|1\|1\|1\|1\|5\|333\|453
tig0018197	exon	61594	61977	61594	ID=Msa1365010-mRNA-1:exon:14356;Parent=Msa1365010-mRNA-1
tig0018197	exon	62053	62113	62053	ID=Msa1365010-mRNA-1:exon:14355;Parent=Msa1365010-mRNA-1
tig0018197	exon	62462	62649	62462	ID=Msa1365010-mRNA-1:exon:14354;Parent=Msa1365010-mRNA-1
tig0018197	exon	63087	63511	63087	ID=Msa1365010-mRNA-1:exon:14353;Parent=Msa1365010-mRNA-1
tig0018197	exon	63967	64739	63967	ID=Msa1365010-mRNA-1:exon:14352;Parent=Msa1365010-mRNA-1
tig0018197	five_prime_UTR	64604	64739	64604	ID=Msa1365010-mRNA-1:five_prime_utr;Parent=Msa1365010-mRNA-1
tig0018197	CDS	63967	64603	63967	ID=Msa1365010-mRNA-1:cds;Parent=Msa1365010-mRNA-1
tig0018197	CDS	63087	63511	63087	ID=Msa1365010-mRNA-1:cds;Parent=Msa1365010-mRNA-1
tig0018197	CDS	62462	62649	62462	ID=Msa1365010-mRNA-1:cds;Parent=Msa1365010-mRNA-1
tig0018197	CDS	62053	62113	62053	ID=Msa1365010-mRNA-1:cds;Parent=Msa1365010-mRNA-1
tig0018197	CDS	61927	61977	61927	ID=Msa1365010-mRNA-1:cds;Parent=Msa1365010-mRNA-1
tig0018197	three_prime_UTR	61594	61926	61594	ID=Msa1365010-mRNA-1:three_prime_utr;Parent=Msa1365010-mRNA-1

Gene Sequence

>Msa1365010

ATGGAAAGGTTAGGGTGGTGTTTGGAATTCGTTCTTGGACATTCTTCAACAAGTATAGAGAGTGAGCATATTAAGGAAATCTTGAAACTAAGCTCCTCAGTCACCGAAATCGATAATCGGAAGATGAAAATGCTTCTGTTGGAAGGCCTTGAAGATGAGTTGTTGTCCAAAGCATCTATCGATGAATGGATGCTTGAACTTCTCGAGGTATTCGAAAAACTACTTCTAATTGATTGGGACCCTTCTTCAAACCCTAACCCAAATCCTATTAGCGATGCCATGAAATCTGCTTATGTCTACATTGCTGTGGAATGTACCGTTAGGTACCTTGAAGCAGCAGGTGCAGGTGGTATATCTAACCCTAAACACTACCTCCAAGCAGTTGACAGAATATGGAACCGTAGGTTTCAAAACCTGGAGGGAAGAAGTTATTTGCTAACTCCAAAATTGAGATTCTGGAAAAGCCGAATCGATGCTTCCCTTTTCAACTCACGATACATGCTCAAACTTGCTTCATTGTCTGATACCAGAAGGAAAGCCATTCAAGAGGTTCAACTTTTTTTGGAGGATGCTCGGAATAACCTTGTAGGCCCTTCCTTTCTTCACTCTGTTGCTGCTCCTTCTGCTGCTCATAATGAGTCTCCGATGGAACTCGACAAAGACAATGGAAGGCTTAAAGGCAAGGCTTCTACTACTGTTGTTGTTGTTGAGGAAATGGCTACATCAACCAGCTGTAGCAAAATTGACTCTTTGCCAGTTAACGAGGCCCAAAAGAACGGGGATTCACTTAAATGCAATTCTGTGGAGTTCAAAACATTTGCGAACGATCCTGTGCCCAATTCTATTTGTATGCCAGACATTGTAAGGTCTGATGTGGCAATTGAAGACACAAATCAGGAGCCACAAATGGAAAACCAGAGTAAAGATGCAAATGTACCCAACCCACATGCTTGCCTAAATGTTAACAATGATGAGGCCAATCTTACGAAGGCAACTTCCCATCAAAGTGATGTTCATCATCCTAGCTTGATGAAACCAAATAGTTCTGCTCGTACTCACGAGTGGGATGATTCGATCGATGGATTGCAGGCAGGAACATCAAGGGGCACAAGTAGAATTCGTTTGCGTAGTCCAGAGAGGAAGAAGCTTTCTCCGTTGAAGGAGTATGAACCAAAAAATATTACGAAAAGGAGAAAGAAAAAAAAATGGAGTCAATGGGAAGAGGATAATCTAAGGACCGGAATTAAACTAATTGGAGAAGGAAACTGGAAATCAATTCTTCGTTCTTATGAATTTGACGAAAGAACTGAAGTTGATTTGAAAGACAAGTGGAGAAATTTGAAGCGGTCTGGATGCCAATGA

Protein sequence

>Msa1365010

MERLGWCLEFVLGHSSTSIESEHIKEILKLSSSVTEIDNRKMKMLLLEGLEDELLSKASIDEWMLELLEVFEKLLLIDWDPSSNPNPNPISDAMKSAYVYIAVECTVRYLEAAGAGGISNPKHYLQAVDRIWNRRFQNLEGRSYLLTPKLRFWKSRIDASLFNSRYMLKLASLSDTRRKAIQEVQLFLEDARNNLVGPSFLHSVAAPSAAHNESPMELDKDNGRLKGKASTTVVVVEEMATSTSCSKIDSLPVNEAQKNGDSLKCNSVEFKTFANDPVPNSICMPDIVRSDVAIEDTNQEPQMENQSKDANVPNPHACLNVNNDEANLTKATSHQSDVHHPSLMKPNSSARTHEWDDSIDGLQAGTSRGTSRIRLRSPERKKLSPLKEYEPKNITKRRKKKKWSQWEEDNLRTGIKLIGEGNWKSILRSYEFDERTEVDLKDKWRNLKRSGCQ*