Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365750 | XP_003603989.1 | 95.876 | 194 | 8 | 0 | 1 | 194 | 1 | 194 | 3.94e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365750 | sp|Q9LQZ7|BBX21_ARATH | 51.456 | 206 | 88 | 4 | 1 | 194 | 1 | 206 | 2.59e-60 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365750 | G7J7R4 | 95.876 | 194 | 8 | 0 | 1 | 194 | 1 | 194 | 1.88e-135 | 387 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1365750 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0523850 | Msa1365750 | 0.811950 | 5.416890e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365750 | MtrunA17_Chr3g0145061 | 95.876 | 194 | 8 | 0 | 1 | 194 | 1 | 194 | 3.63e-139 | 387 |
| Msa1365750 | MtrunA17_Chr4g0035651 | 60.309 | 194 | 68 | 4 | 1 | 193 | 1 | 186 | 5.13e-72 | 217 |
| Msa1365750 | MtrunA17_Chr3g0142221 | 52.151 | 186 | 45 | 3 | 1 | 185 | 1 | 143 | 7.42e-60 | 186 |
| Msa1365750 | MtrunA17_Chr1g0155811 | 50.515 | 194 | 85 | 3 | 1 | 194 | 1 | 183 | 3.03e-55 | 176 |
| Msa1365750 | MtrunA17_Chr2g0314671 | 55.738 | 122 | 53 | 1 | 1 | 122 | 1 | 121 | 2.11e-40 | 139 |
| Msa1365750 | MtrunA17_Chr4g0033641 | 45.390 | 141 | 69 | 4 | 1 | 140 | 1 | 134 | 3.23e-35 | 124 |
| Msa1365750 | MtrunA17_Chr2g0329511 | 52.294 | 109 | 51 | 1 | 1 | 109 | 1 | 108 | 8.85e-34 | 120 |
| Msa1365750 | MtrunA17_Chr5g0405151 | 36.429 | 140 | 79 | 3 | 1 | 134 | 1 | 136 | 5.99e-24 | 93.2 |
| Msa1365750 | MtrunA17_Chr1g0150471 | 39.048 | 105 | 54 | 1 | 5 | 109 | 6 | 100 | 8.34e-18 | 79.7 |
| Msa1365750 | MtrunA17_Chr3g0136701 | 37.113 | 97 | 51 | 1 | 5 | 101 | 6 | 92 | 3.66e-16 | 74.7 |
| Msa1365750 | MtrunA17_Chr4g0072871 | 39.785 | 93 | 46 | 1 | 5 | 97 | 22 | 104 | 5.70e-16 | 75.1 |
| Msa1365750 | MtrunA17_Chr5g0429341 | 30.769 | 195 | 103 | 8 | 1 | 176 | 1 | 182 | 8.82e-14 | 68.9 |
| Msa1365750 | MtrunA17_Chr7g0220721 | 36.559 | 93 | 49 | 1 | 5 | 97 | 26 | 108 | 1.20e-13 | 68.6 |
| Msa1365750 | MtrunA17_Chr3g0120711 | 34.021 | 97 | 53 | 2 | 1 | 97 | 1 | 86 | 9.18e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365750 | AT1G75540.1 | 51.456 | 206 | 88 | 4 | 1 | 194 | 1 | 206 | 2.63e-61 | 194 |
| Msa1365750 | AT4G39070.1 | 55.000 | 200 | 74 | 5 | 1 | 184 | 1 | 200 | 1.80e-56 | 179 |
| Msa1365750 | AT1G06040.2 | 52.206 | 136 | 62 | 2 | 1 | 136 | 1 | 133 | 1.37e-40 | 136 |
| Msa1365750 | AT1G78600.1 | 54.237 | 118 | 53 | 1 | 1 | 118 | 1 | 117 | 1.60e-39 | 137 |
| Msa1365750 | AT1G78600.2 | 54.237 | 118 | 53 | 1 | 1 | 118 | 1 | 117 | 2.54e-39 | 137 |
| Msa1365750 | AT1G06040.1 | 52.206 | 136 | 62 | 2 | 1 | 136 | 1 | 133 | 3.00e-39 | 135 |
| Msa1365750 | AT4G10240.1 | 51.799 | 139 | 57 | 3 | 1 | 133 | 1 | 135 | 1.07e-38 | 130 |
| Msa1365750 | AT2G31380.1 | 48.092 | 131 | 67 | 1 | 1 | 131 | 1 | 130 | 5.07e-36 | 126 |
| Msa1365750 | AT4G38960.1 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 1.39e-23 | 92.8 |
| Msa1365750 | AT4G38960.6 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 1.39e-23 | 92.8 |
| Msa1365750 | AT2G21320.1 | 44.000 | 100 | 52 | 2 | 1 | 100 | 1 | 96 | 1.16e-22 | 90.1 |
| Msa1365750 | AT2G24790.2 | 39.785 | 93 | 46 | 1 | 5 | 97 | 8 | 90 | 3.17e-17 | 77.0 |
| Msa1365750 | AT2G24790.1 | 38.144 | 97 | 50 | 1 | 5 | 101 | 8 | 94 | 9.66e-17 | 76.6 |
| Msa1365750 | AT5G24930.1 | 36.082 | 97 | 52 | 1 | 5 | 101 | 6 | 92 | 6.20e-16 | 75.1 |
| Msa1365750 | AT4G38960.3 | 28.750 | 160 | 67 | 3 | 1 | 117 | 1 | 156 | 1.37e-15 | 72.8 |
| Msa1365750 | AT5G15850.1 | 32.787 | 122 | 71 | 2 | 5 | 125 | 12 | 123 | 2.22e-14 | 70.9 |
| Msa1365750 | AT3G02380.1 | 34.286 | 105 | 57 | 2 | 5 | 109 | 16 | 108 | 1.56e-13 | 68.2 |
| Msa1365750 | AT2G47890.2 | 38.298 | 94 | 48 | 2 | 5 | 98 | 13 | 96 | 7.60e-13 | 65.5 |
| Msa1365750 | AT2G47890.3 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 1.33e-12 | 65.5 |
| Msa1365750 | AT2G47890.1 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 1.78e-12 | 65.1 |
| Msa1365750 | AT1G28050.1 | 34.653 | 101 | 56 | 1 | 2 | 102 | 6 | 96 | 2.68e-12 | 65.1 |
| Msa1365750 | AT5G15840.2 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 3.42e-12 | 63.9 |
| Msa1365750 | AT5G15840.1 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 3.99e-12 | 64.3 |
| Msa1365750 | AT2G33500.2 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 5.31e-12 | 63.9 |
| Msa1365750 | AT2G33500.1 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 5.47e-12 | 63.9 |
Find 38 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTACTAGAGTAGTTTCT+TGG | 0.265361 | tig0018386:-49234 | None:intergenic |
| GAAGCTTTCAAGCAATTCTT+TGG | 0.294858 | tig0018386:+49176 | Msa1365750:CDS |
| GATGCTTCTTTCCCACCTAA+TGG | 0.309132 | tig0018386:+49417 | Msa1365750:CDS |
| ATAGAATCGCTCTATCTTCT+TGG | 0.325288 | tig0018386:-49077 | None:intergenic |
| CCCACCTAATGGTTTCTGTA+AGG | 0.391077 | tig0018386:+49428 | Msa1365750:CDS |
| TAAACCTTACAGAAACCATT+AGG | 0.399460 | tig0018386:-49432 | None:intergenic |
| TCTTGGTTCAGAGCCAATAC+TGG | 0.403841 | tig0018386:-49217 | None:intergenic |
| ATCACAAAGAGGGTAGTCTT+TGG | 0.421009 | tig0018386:-48842 | None:intergenic |
| AACATACACAGAAACATAAC+AGG | 0.440782 | tig0018386:+49136 | Msa1365750:CDS |
| CATAACAGGTTTCTTCTCTC+TGG | 0.447881 | tig0018386:+49150 | Msa1365750:CDS |
| GTGTATGTTCATTTGCTCCA+TGG | 0.455691 | tig0018386:-49122 | None:intergenic |
| GTGTTTGGTTGCAAGCTTGT+TGG | 0.456215 | tig0018386:-48791 | None:intergenic |
| CATTTGCTCCATGGATTGGA+AGG | 0.479724 | tig0018386:-49113 | None:intergenic |
| ATACTGGTGGATGATGAATC+TGG | 0.490828 | tig0018386:-49201 | None:intergenic |
| GATTCATCATCCACCAGTAT+TGG | 0.497576 | tig0018386:+49204 | Msa1365750:CDS |
| TGTTCATTTGCTCCATGGAT+TGG | 0.505507 | tig0018386:-49117 | None:intergenic |
| GAATGTGACCTTCCAATCCA+TGG | 0.511555 | tig0018386:+49105 | Msa1365750:CDS |
| GAGGGTAGTCTTTGGAGTTG+AGG | 0.523182 | tig0018386:-48834 | None:intergenic |
| GATGAAGCTGCTCTTTGCCA+TGG | 0.528890 | tig0018386:+48745 | Msa1365750:CDS |
| GACAACATGGCTAGTGACAC+TGG | 0.532967 | tig0018386:+49321 | Msa1365750:CDS |
| AAATGCAAGTTCTTCTTGCA+TGG | 0.564285 | tig0018386:+49293 | Msa1365750:CDS |
| CTTTCTCACACACATCACAT+TGG | 0.572968 | tig0018386:-48696 | None:intergenic |
| TGGTTCAGAGCCAATACTGG+TGG | 0.580417 | tig0018386:-49214 | None:intergenic |
| TGGTTGCAAGCTTGTTGGCA+CGG | 0.580653 | tig0018386:-48786 | None:intergenic |
| GGTAGTCTTTGGAGTTGAGG+TGG | 0.585466 | tig0018386:-48831 | None:intergenic |
| TTCATCTGAAGGACAGAACA+TGG | 0.588007 | tig0018386:-48728 | None:intergenic |
| TACTTGATTGAAACAATACC+TGG | 0.589710 | tig0018386:+49372 | Msa1365750:CDS |
| ACCTTACAGAAACCATTAGG+TGG | 0.591397 | tig0018386:-49429 | None:intergenic |
| CAAAGAGCAGCTTCATCTGA+AGG | 0.591587 | tig0018386:-48739 | None:intergenic |
| GGATTGTATGATCACATCCA+TGG | 0.608665 | tig0018386:-48762 | None:intergenic |
| TACTGGTGGATGATGAATCT+GGG | 0.618443 | tig0018386:-49200 | None:intergenic |
| TTGCATGGCTGAAGACAACA+TGG | 0.623591 | tig0018386:+49308 | Msa1365750:CDS |
| CCTTACAGAAACCATTAGGT+GGG | 0.623605 | tig0018386:-49428 | None:intergenic |
| CTTGACAGATATCACAAAGA+GGG | 0.634180 | tig0018386:-48852 | None:intergenic |
| AAGTCTTCAAAACAGTAACC+AGG | 0.647020 | tig0018386:-49390 | None:intergenic |
| ACTTGACAGATATCACAAAG+AGG | 0.665459 | tig0018386:-48853 | None:intergenic |
| TTGCAAGCTTGTTGGCACGG+TGG | 0.712576 | tig0018386:-48783 | None:intergenic |
| TGATGTGTGTGAGAAAGCTG+AGG | 0.739027 | tig0018386:+48702 | Msa1365750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCGTTTTTATAAAAAAATGA+CGG | - | tig0018386:48888-48907 | None:intergenic | 20.0% |
| !!! | CCGTCATTTTTTTATAAAAA+CGG | + | tig0018386:48885-48904 | Msa1365750:intron | 20.0% |
| !!! | TTAATGACCATTTTAAAATG+TGG | - | tig0018386:48996-49015 | None:intergenic | 20.0% |
| !!! | CCGTTTTTATAAAAAAATGA+CGG | - | tig0018386:48888-48907 | None:intergenic | 20.0% |
| !!! | CCGTCATTTTTTTATAAAAA+CGG | + | tig0018386:48885-48904 | Msa1365750:intron | 20.0% |
| !!! | TTAATGACCATTTTAAAATG+TGG | - | tig0018386:48996-49015 | None:intergenic | 20.0% |
| !!! | TTTTTTTATAAAAACGGTCG+CGG | + | tig0018386:48891-48910 | Msa1365750:intron | 25.0% |
| !!! | ACTCTAACCACATTTTAAAA+TGG | + | tig0018386:48986-49005 | Msa1365750:intron | 25.0% |
| !! | TTTTCATTGGAAATTGATCT+TGG | - | tig0018386:49276-49295 | None:intergenic | 25.0% |
| !!! | TTTTTTTATAAAAACGGTCG+CGG | + | tig0018386:48891-48910 | Msa1365750:intron | 25.0% |
| !!! | ACTCTAACCACATTTTAAAA+TGG | + | tig0018386:48986-49005 | Msa1365750:intron | 25.0% |
| !! | TTTTCATTGGAAATTGATCT+TGG | - | tig0018386:49276-49295 | None:intergenic | 25.0% |
| TTAAAATGTGGTTAGAGTTG+TGG | - | tig0018386:48984-49003 | None:intergenic | 30.0% | |
| AACATACACAGAAACATAAC+AGG | + | tig0018386:49136-49155 | Msa1365750:CDS | 30.0% | |
| ! | AGAAGAACTTGCATTTTCAT+TGG | - | tig0018386:49289-49308 | None:intergenic | 30.0% |
| TACTTGATTGAAACAATACC+TGG | + | tig0018386:49372-49391 | Msa1365750:CDS | 30.0% | |
| TAAACCTTACAGAAACCATT+AGG | - | tig0018386:49435-49454 | None:intergenic | 30.0% | |
| TTAAAATGTGGTTAGAGTTG+TGG | - | tig0018386:48984-49003 | None:intergenic | 30.0% | |
| AACATACACAGAAACATAAC+AGG | + | tig0018386:49136-49155 | Msa1365750:CDS | 30.0% | |
| ! | AGAAGAACTTGCATTTTCAT+TGG | - | tig0018386:49289-49308 | None:intergenic | 30.0% |
| TACTTGATTGAAACAATACC+TGG | + | tig0018386:49372-49391 | Msa1365750:CDS | 30.0% | |
| TAAACCTTACAGAAACCATT+AGG | - | tig0018386:49435-49454 | None:intergenic | 30.0% | |
| AAGAGAAAAACGAGTGTGTT+TGG | - | tig0018386:48809-48828 | None:intergenic | 35.0% | |
| CTTGACAGATATCACAAAGA+GGG | - | tig0018386:48855-48874 | None:intergenic | 35.0% | |
| ACTTGACAGATATCACAAAG+AGG | - | tig0018386:48856-48875 | None:intergenic | 35.0% | |
| TATTAAAGATCCAGATGCGA+CGG | - | tig0018386:48926-48945 | None:intergenic | 35.0% | |
| ATAGAATCGCTCTATCTTCT+TGG | - | tig0018386:49080-49099 | None:intergenic | 35.0% | |
| GAAGCTTTCAAGCAATTCTT+TGG | + | tig0018386:49176-49195 | Msa1365750:CDS | 35.0% | |
| GATCTACTAGAGTAGTTTCT+TGG | - | tig0018386:49237-49256 | None:intergenic | 35.0% | |
| AAATGCAAGTTCTTCTTGCA+TGG | + | tig0018386:49293-49312 | Msa1365750:CDS | 35.0% | |
| AAGTCTTCAAAACAGTAACC+AGG | - | tig0018386:49393-49412 | None:intergenic | 35.0% | |
| AAGAGAAAAACGAGTGTGTT+TGG | - | tig0018386:48809-48828 | None:intergenic | 35.0% | |
| CTTGACAGATATCACAAAGA+GGG | - | tig0018386:48855-48874 | None:intergenic | 35.0% | |
| ACTTGACAGATATCACAAAG+AGG | - | tig0018386:48856-48875 | None:intergenic | 35.0% | |
| TATTAAAGATCCAGATGCGA+CGG | - | tig0018386:48926-48945 | None:intergenic | 35.0% | |
| ATAGAATCGCTCTATCTTCT+TGG | - | tig0018386:49080-49099 | None:intergenic | 35.0% | |
| GAAGCTTTCAAGCAATTCTT+TGG | + | tig0018386:49176-49195 | Msa1365750:CDS | 35.0% | |
| GATCTACTAGAGTAGTTTCT+TGG | - | tig0018386:49237-49256 | None:intergenic | 35.0% | |
| AAATGCAAGTTCTTCTTGCA+TGG | + | tig0018386:49293-49312 | Msa1365750:CDS | 35.0% | |
| AAGTCTTCAAAACAGTAACC+AGG | - | tig0018386:49393-49412 | None:intergenic | 35.0% | |
| CTTTCTCACACACATCACAT+TGG | - | tig0018386:48699-48718 | None:intergenic | 40.0% | |
| TTCATCTGAAGGACAGAACA+TGG | - | tig0018386:48731-48750 | None:intergenic | 40.0% | |
| GGATTGTATGATCACATCCA+TGG | - | tig0018386:48765-48784 | None:intergenic | 40.0% | |
| ATCACAAAGAGGGTAGTCTT+TGG | - | tig0018386:48845-48864 | None:intergenic | 40.0% | |
| TATAAAAACGGTCGCGGTAA+AGG | + | tig0018386:48897-48916 | Msa1365750:intron | 40.0% | |
| ! | AATATCGTGCGCTTTTGTAC+AGG | + | tig0018386:49032-49051 | Msa1365750:intron | 40.0% |
| TGTTCATTTGCTCCATGGAT+TGG | - | tig0018386:49120-49139 | None:intergenic | 40.0% | |
| GTGTATGTTCATTTGCTCCA+TGG | - | tig0018386:49125-49144 | None:intergenic | 40.0% | |
| CATAACAGGTTTCTTCTCTC+TGG | + | tig0018386:49150-49169 | Msa1365750:CDS | 40.0% | |
| ! | TACTGGTGGATGATGAATCT+GGG | - | tig0018386:49203-49222 | None:intergenic | 40.0% |
| ! | ATACTGGTGGATGATGAATC+TGG | - | tig0018386:49204-49223 | None:intergenic | 40.0% |
| GATTCATCATCCACCAGTAT+TGG | + | tig0018386:49204-49223 | Msa1365750:CDS | 40.0% | |
| CCTTACAGAAACCATTAGGT+GGG | - | tig0018386:49431-49450 | None:intergenic | 40.0% | |
| ACCTTACAGAAACCATTAGG+TGG | - | tig0018386:49432-49451 | None:intergenic | 40.0% | |
| CTTTCTCACACACATCACAT+TGG | - | tig0018386:48699-48718 | None:intergenic | 40.0% | |
| TTCATCTGAAGGACAGAACA+TGG | - | tig0018386:48731-48750 | None:intergenic | 40.0% | |
| GGATTGTATGATCACATCCA+TGG | - | tig0018386:48765-48784 | None:intergenic | 40.0% | |
| ATCACAAAGAGGGTAGTCTT+TGG | - | tig0018386:48845-48864 | None:intergenic | 40.0% | |
| TATAAAAACGGTCGCGGTAA+AGG | + | tig0018386:48897-48916 | Msa1365750:intron | 40.0% | |
| ! | AATATCGTGCGCTTTTGTAC+AGG | + | tig0018386:49032-49051 | Msa1365750:intron | 40.0% |
| TGTTCATTTGCTCCATGGAT+TGG | - | tig0018386:49120-49139 | None:intergenic | 40.0% | |
| GTGTATGTTCATTTGCTCCA+TGG | - | tig0018386:49125-49144 | None:intergenic | 40.0% | |
| CATAACAGGTTTCTTCTCTC+TGG | + | tig0018386:49150-49169 | Msa1365750:CDS | 40.0% | |
| ! | TACTGGTGGATGATGAATCT+GGG | - | tig0018386:49203-49222 | None:intergenic | 40.0% |
| ! | ATACTGGTGGATGATGAATC+TGG | - | tig0018386:49204-49223 | None:intergenic | 40.0% |
| GATTCATCATCCACCAGTAT+TGG | + | tig0018386:49204-49223 | Msa1365750:CDS | 40.0% | |
| CCTTACAGAAACCATTAGGT+GGG | - | tig0018386:49431-49450 | None:intergenic | 40.0% | |
| ACCTTACAGAAACCATTAGG+TGG | - | tig0018386:49432-49451 | None:intergenic | 40.0% | |
| TGATGTGTGTGAGAAAGCTG+AGG | + | tig0018386:48702-48721 | Msa1365750:CDS | 45.0% | |
| CAAAGAGCAGCTTCATCTGA+AGG | - | tig0018386:48742-48761 | None:intergenic | 45.0% | |
| GTGTTTGGTTGCAAGCTTGT+TGG | - | tig0018386:48794-48813 | None:intergenic | 45.0% | |
| GAATGTGACCTTCCAATCCA+TGG | + | tig0018386:49105-49124 | Msa1365750:CDS | 45.0% | |
| !! | CATTTGCTCCATGGATTGGA+AGG | - | tig0018386:49116-49135 | None:intergenic | 45.0% |
| TCTTGGTTCAGAGCCAATAC+TGG | - | tig0018386:49220-49239 | None:intergenic | 45.0% | |
| TTGCATGGCTGAAGACAACA+TGG | + | tig0018386:49308-49327 | Msa1365750:CDS | 45.0% | |
| GATGCTTCTTTCCCACCTAA+TGG | + | tig0018386:49417-49436 | Msa1365750:CDS | 45.0% | |
| CCCACCTAATGGTTTCTGTA+AGG | + | tig0018386:49428-49447 | Msa1365750:CDS | 45.0% | |
| TGATGTGTGTGAGAAAGCTG+AGG | + | tig0018386:48702-48721 | Msa1365750:CDS | 45.0% | |
| CAAAGAGCAGCTTCATCTGA+AGG | - | tig0018386:48742-48761 | None:intergenic | 45.0% | |
| GTGTTTGGTTGCAAGCTTGT+TGG | - | tig0018386:48794-48813 | None:intergenic | 45.0% | |
| GAATGTGACCTTCCAATCCA+TGG | + | tig0018386:49105-49124 | Msa1365750:CDS | 45.0% | |
| !! | CATTTGCTCCATGGATTGGA+AGG | - | tig0018386:49116-49135 | None:intergenic | 45.0% |
| TCTTGGTTCAGAGCCAATAC+TGG | - | tig0018386:49220-49239 | None:intergenic | 45.0% | |
| TTGCATGGCTGAAGACAACA+TGG | + | tig0018386:49308-49327 | Msa1365750:CDS | 45.0% | |
| GATGCTTCTTTCCCACCTAA+TGG | + | tig0018386:49417-49436 | Msa1365750:CDS | 45.0% | |
| CCCACCTAATGGTTTCTGTA+AGG | + | tig0018386:49428-49447 | Msa1365750:CDS | 45.0% | |
| GATGAAGCTGCTCTTTGCCA+TGG | + | tig0018386:48745-48764 | Msa1365750:CDS | 50.0% | |
| !! | TGGTTGCAAGCTTGTTGGCA+CGG | - | tig0018386:48789-48808 | None:intergenic | 50.0% |
| !! | GGTAGTCTTTGGAGTTGAGG+TGG | - | tig0018386:48834-48853 | None:intergenic | 50.0% |
| !! | GAGGGTAGTCTTTGGAGTTG+AGG | - | tig0018386:48837-48856 | None:intergenic | 50.0% |
| TGGTTCAGAGCCAATACTGG+TGG | - | tig0018386:49217-49236 | None:intergenic | 50.0% | |
| GACAACATGGCTAGTGACAC+TGG | + | tig0018386:49321-49340 | Msa1365750:CDS | 50.0% | |
| GATGAAGCTGCTCTTTGCCA+TGG | + | tig0018386:48745-48764 | Msa1365750:CDS | 50.0% | |
| !! | TGGTTGCAAGCTTGTTGGCA+CGG | - | tig0018386:48789-48808 | None:intergenic | 50.0% |
| !! | GGTAGTCTTTGGAGTTGAGG+TGG | - | tig0018386:48834-48853 | None:intergenic | 50.0% |
| !! | GAGGGTAGTCTTTGGAGTTG+AGG | - | tig0018386:48837-48856 | None:intergenic | 50.0% |
| TGGTTCAGAGCCAATACTGG+TGG | - | tig0018386:49217-49236 | None:intergenic | 50.0% | |
| GACAACATGGCTAGTGACAC+TGG | + | tig0018386:49321-49340 | Msa1365750:CDS | 50.0% | |
| !! | TTGCAAGCTTGTTGGCACGG+TGG | - | tig0018386:48786-48805 | None:intergenic | 55.0% |
| GTAAAGGTTGCCGTCGCATC+TGG | + | tig0018386:48913-48932 | Msa1365750:intron | 55.0% | |
| ! | CGTGCGCTTTTGTACAGGAG+AGG | + | tig0018386:49037-49056 | Msa1365750:intron | 55.0% |
| ! | GCTTTTGTACAGGAGAGGCG+TGG | + | tig0018386:49042-49061 | Msa1365750:intron | 55.0% |
| !! | TTGCAAGCTTGTTGGCACGG+TGG | - | tig0018386:48786-48805 | None:intergenic | 55.0% |
| GTAAAGGTTGCCGTCGCATC+TGG | + | tig0018386:48913-48932 | Msa1365750:intron | 55.0% | |
| ! | CGTGCGCTTTTGTACAGGAG+AGG | + | tig0018386:49037-49056 | Msa1365750:intron | 55.0% |
| ! | GCTTTTGTACAGGAGAGGCG+TGG | + | tig0018386:49042-49061 | Msa1365750:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018386 | gene | 48688 | 49455 | 48688 | ID=Msa1365750;Name=Msa1365750 |
| tig0018386 | mRNA | 48688 | 49455 | 48688 | ID=Msa1365750-mRNA-1;Parent=Msa1365750;Name=Msa1365750-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|2|0|195 |
| tig0018386 | exon | 48688 | 48873 | 48688 | ID=Msa1365750-mRNA-1:exon:14760;Parent=Msa1365750-mRNA-1 |
| tig0018386 | exon | 49054 | 49455 | 49054 | ID=Msa1365750-mRNA-1:exon:14761;Parent=Msa1365750-mRNA-1 |
| tig0018386 | CDS | 48688 | 48873 | 48688 | ID=Msa1365750-mRNA-1:cds;Parent=Msa1365750-mRNA-1 |
| tig0018386 | CDS | 49054 | 49455 | 49054 | ID=Msa1365750-mRNA-1:cds;Parent=Msa1365750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
