Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523850 | ADD09607.1 | 80.657 | 274 | 41 | 5 | 1 | 262 | 1 | 274 | 1.53e-134 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523850 | sp|Q9LQZ7|BBX21_ARATH | 51.000 | 200 | 85 | 4 | 1 | 187 | 1 | 200 | 2.70e-57 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523850 | D3YBF6 | 80.657 | 274 | 41 | 5 | 1 | 262 | 1 | 274 | 7.32e-135 | 390 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0523850 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0386930 | Msa0523850 | 0.842314 | 2.789440e-58 | -8.615850e-47 |
| Msa0475960 | Msa0523850 | 0.924804 | 4.316233e-90 | -8.615850e-47 |
| Msa0523850 | Msa1365750 | 0.811950 | 5.416890e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523850 | MtrunA17_Chr3g0145061 | 95.263 | 190 | 8 | 1 | 1 | 189 | 1 | 190 | 9.58e-133 | 374 |
| Msa0523850 | MtrunA17_Chr4g0035651 | 59.788 | 189 | 69 | 3 | 1 | 189 | 1 | 182 | 1.46e-71 | 219 |
| Msa0523850 | MtrunA17_Chr3g0142221 | 52.432 | 185 | 45 | 3 | 1 | 184 | 1 | 143 | 1.63e-59 | 188 |
| Msa0523850 | MtrunA17_Chr1g0155811 | 48.515 | 202 | 91 | 4 | 1 | 199 | 1 | 192 | 6.78e-54 | 175 |
| Msa0523850 | MtrunA17_Chr2g0314671 | 55.738 | 122 | 53 | 1 | 1 | 122 | 1 | 121 | 5.50e-40 | 140 |
| Msa0523850 | MtrunA17_Chr4g0033641 | 42.138 | 159 | 88 | 3 | 1 | 158 | 1 | 156 | 6.23e-35 | 125 |
| Msa0523850 | MtrunA17_Chr2g0329511 | 52.294 | 109 | 51 | 1 | 1 | 109 | 1 | 108 | 1.97e-33 | 121 |
| Msa0523850 | MtrunA17_Chr5g0405151 | 37.594 | 133 | 73 | 3 | 1 | 127 | 1 | 129 | 2.03e-23 | 94.0 |
| Msa0523850 | MtrunA17_Chr1g0150471 | 39.048 | 105 | 54 | 1 | 5 | 109 | 6 | 100 | 1.15e-17 | 80.9 |
| Msa0523850 | MtrunA17_Chr3g0136701 | 37.113 | 97 | 51 | 1 | 5 | 101 | 6 | 92 | 7.73e-16 | 75.5 |
| Msa0523850 | MtrunA17_Chr4g0072871 | 39.785 | 93 | 46 | 1 | 5 | 97 | 22 | 104 | 1.05e-15 | 75.9 |
| Msa0523850 | MtrunA17_Chr7g0220721 | 36.559 | 93 | 49 | 1 | 5 | 97 | 26 | 108 | 1.79e-13 | 69.7 |
| Msa0523850 | MtrunA17_Chr5g0429341 | 35.052 | 97 | 53 | 2 | 1 | 97 | 1 | 87 | 3.84e-13 | 68.6 |
| Msa0523850 | MtrunA17_Chr3g0120711 | 30.769 | 182 | 96 | 6 | 1 | 167 | 1 | 167 | 8.10e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523850 | AT1G75540.1 | 51.000 | 200 | 85 | 4 | 1 | 187 | 1 | 200 | 2.75e-58 | 189 |
| Msa0523850 | AT4G39070.1 | 55.000 | 200 | 73 | 5 | 1 | 183 | 1 | 200 | 2.42e-56 | 181 |
| Msa0523850 | AT1G06040.2 | 52.593 | 135 | 62 | 2 | 1 | 135 | 1 | 133 | 2.66e-40 | 137 |
| Msa0523850 | AT1G06040.1 | 52.593 | 135 | 62 | 2 | 1 | 135 | 1 | 133 | 4.63e-39 | 137 |
| Msa0523850 | AT1G78600.1 | 51.163 | 129 | 59 | 2 | 1 | 129 | 1 | 125 | 5.43e-39 | 138 |
| Msa0523850 | AT1G78600.2 | 51.163 | 129 | 59 | 2 | 1 | 129 | 1 | 125 | 9.42e-39 | 137 |
| Msa0523850 | AT4G10240.1 | 54.688 | 128 | 48 | 3 | 1 | 122 | 1 | 124 | 1.04e-37 | 130 |
| Msa0523850 | AT2G31380.1 | 53.211 | 109 | 50 | 1 | 1 | 109 | 1 | 108 | 7.67e-35 | 125 |
| Msa0523850 | AT4G38960.1 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 2.97e-23 | 93.6 |
| Msa0523850 | AT4G38960.6 | 39.316 | 117 | 67 | 2 | 1 | 117 | 1 | 113 | 2.97e-23 | 93.6 |
| Msa0523850 | AT2G21320.1 | 44.000 | 100 | 52 | 2 | 1 | 100 | 1 | 96 | 3.23e-22 | 90.9 |
| Msa0523850 | AT2G24790.2 | 39.785 | 93 | 46 | 1 | 5 | 97 | 8 | 90 | 5.27e-17 | 77.8 |
| Msa0523850 | AT2G24790.1 | 38.144 | 97 | 50 | 1 | 5 | 101 | 8 | 94 | 1.62e-16 | 77.8 |
| Msa0523850 | AT5G24930.1 | 36.082 | 97 | 52 | 1 | 5 | 101 | 6 | 92 | 1.22e-15 | 76.3 |
| Msa0523850 | AT4G38960.3 | 28.750 | 160 | 67 | 3 | 1 | 117 | 1 | 156 | 2.29e-15 | 73.6 |
| Msa0523850 | AT5G15850.1 | 32.520 | 123 | 72 | 2 | 5 | 126 | 12 | 124 | 2.31e-14 | 72.4 |
| Msa0523850 | AT3G02380.1 | 34.286 | 105 | 57 | 2 | 5 | 109 | 16 | 108 | 2.11e-13 | 69.3 |
| Msa0523850 | AT2G47890.2 | 35.593 | 118 | 55 | 3 | 5 | 111 | 13 | 120 | 1.80e-12 | 65.9 |
| Msa0523850 | AT2G47890.3 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 2.43e-12 | 66.2 |
| Msa0523850 | AT2G47890.1 | 41.176 | 85 | 40 | 2 | 5 | 89 | 13 | 87 | 2.90e-12 | 66.2 |
| Msa0523850 | AT1G28050.1 | 34.653 | 101 | 56 | 1 | 2 | 102 | 6 | 96 | 3.59e-12 | 66.2 |
| Msa0523850 | AT5G15840.1 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 4.59e-12 | 65.9 |
| Msa0523850 | AT2G33500.2 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 6.25e-12 | 65.5 |
| Msa0523850 | AT2G33500.1 | 33.000 | 100 | 57 | 1 | 3 | 102 | 10 | 99 | 6.68e-12 | 65.5 |
| Msa0523850 | AT5G15840.2 | 31.132 | 106 | 61 | 2 | 5 | 110 | 20 | 113 | 7.01e-12 | 64.3 |
Find 47 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATGGATGTACAGTTTC+AGG | 0.215995 | 3_4:-77305262 | Msa0523850:CDS |
| TTTGATCTAGAGTGGTTTCT+TGG | 0.257986 | 3_4:+77306541 | None:intergenic |
| ACTTCAAAATGGAAAGATTA+TGG | 0.271971 | 3_4:-77305277 | Msa0523850:CDS |
| GAAGCTTTCAAGCAATTCTT+TGG | 0.294858 | 3_4:-77306599 | Msa0523850:CDS |
| GATGCTTCTTTCCCACCTAA+TGG | 0.309132 | 3_4:-77306361 | Msa0523850:intron |
| CAAAAGTGAACACTTCAAAA+TGG | 0.317889 | 3_4:-77305288 | Msa0523850:CDS |
| ATAGAATCGCTCTATCTTCT+TGG | 0.325288 | 3_4:+77306698 | None:intergenic |
| TCTTGGTTCAGAGCCAATAC+TGG | 0.407926 | 3_4:+77306558 | None:intergenic |
| GCAGAAGCAGAATCATTATT+CGG | 0.420688 | 3_4:-77305421 | Msa0523850:intron |
| ATCACAAAGAGGGTAGTCTT+TGG | 0.421009 | 3_4:+77306916 | None:intergenic |
| AACCAGGTATTGTTTCAATC+AGG | 0.422845 | 3_4:+77306404 | None:intergenic |
| ACCACTGAGCTAATATTAGA+AGG | 0.428353 | 3_4:+77305328 | None:intergenic |
| AACATACACAGAAACATAAC+AGG | 0.440782 | 3_4:-77306639 | Msa0523850:CDS |
| CATAACAGGTTTCTTCTCTC+TGG | 0.447881 | 3_4:-77306625 | Msa0523850:CDS |
| GTGTATGTTCATTTGCTCCA+TGG | 0.455691 | 3_4:+77306653 | None:intergenic |
| GTGTTTGGTTGCAAGCTTGT+TGG | 0.456215 | 3_4:+77306967 | None:intergenic |
| TTATTCGGCACCTCTAGCTC+AGG | 0.475060 | 3_4:-77305380 | Msa0523850:CDS |
| CATTTGCTCCATGGATTGGA+AGG | 0.479724 | 3_4:+77306662 | None:intergenic |
| ATACTGGTGGATGATGAATC+TGG | 0.490828 | 3_4:+77306574 | None:intergenic |
| GATTCATCATCCACCAGTAT+TGG | 0.497576 | 3_4:-77306571 | Msa0523850:CDS |
| TGTTCATTTGCTCCATGGAT+TGG | 0.505507 | 3_4:+77306658 | None:intergenic |
| GAATGTGACCTTCCAATCCA+TGG | 0.511555 | 3_4:-77306670 | Msa0523850:CDS |
| GAGGGTAGTCTTTGGAGTTG+AGG | 0.523182 | 3_4:+77306924 | None:intergenic |
| GATGAAGCTGCTCTTTGCCA+TGG | 0.528890 | 3_4:-77307013 | Msa0523850:CDS |
| GACAACATGGCTAGTGACAC+TGG | 0.532967 | 3_4:-77306457 | Msa0523850:CDS |
| TCTAATATTAGCTCAGTGGT+TGG | 0.556823 | 3_4:-77305325 | Msa0523850:CDS |
| AAATGCAAGTTCTTCTTGCA+TGG | 0.564285 | 3_4:-77306485 | Msa0523850:CDS |
| GCTGATTCAGCCTGAGCTAG+AGG | 0.566827 | 3_4:+77305370 | None:intergenic |
| GAGCTAATATTAGAAGGAGT+AGG | 0.569687 | 3_4:+77305334 | None:intergenic |
| CTTTCTCACACACATCACAT+TGG | 0.572968 | 3_4:+77307062 | None:intergenic |
| TGGTTCAGAGCCAATACTGG+TGG | 0.580417 | 3_4:+77306561 | None:intergenic |
| TGGTTGCAAGCTTGTTGGCA+CGG | 0.580653 | 3_4:+77306972 | None:intergenic |
| TTCATCTGAAGGACAGAACA+TGG | 0.588007 | 3_4:+77307030 | None:intergenic |
| GGTAGTCTTTGGAGTTGAGG+TGG | 0.590439 | 3_4:+77306927 | None:intergenic |
| ACCTTACAGAAACCATTAGG+TGG | 0.591397 | 3_4:+77306349 | None:intergenic |
| CAAAGAGCAGCTTCATCTGA+AGG | 0.591587 | 3_4:+77307019 | None:intergenic |
| GGATTGTATGATCACATCCA+TGG | 0.608665 | 3_4:+77306996 | None:intergenic |
| TACTGGTGGATGATGAATCT+GGG | 0.618443 | 3_4:+77306575 | None:intergenic |
| TACCTGATTGAAACAATACC+TGG | 0.621076 | 3_4:-77306406 | Msa0523850:CDS |
| TTGCATGGCTGAAGACAACA+TGG | 0.623591 | 3_4:-77306470 | Msa0523850:CDS |
| CCTTACAGAAACCATTAGGT+GGG | 0.623605 | 3_4:+77306350 | None:intergenic |
| TCCTTCTAATATTAGCTCAG+TGG | 0.624133 | 3_4:-77305329 | Msa0523850:CDS |
| CTTGACAGATATCACAAAGA+GGG | 0.634180 | 3_4:+77306906 | None:intergenic |
| AAGTCTTCAAAACAGTAACC+AGG | 0.647020 | 3_4:+77306388 | None:intergenic |
| ACTTGACAGATATCACAAAG+AGG | 0.665459 | 3_4:+77306905 | None:intergenic |
| TTGCAAGCTTGTTGGCACGG+TGG | 0.712576 | 3_4:+77306975 | None:intergenic |
| TGATGTGTGTGAGAAAGCTG+AGG | 0.739027 | 3_4:-77307056 | Msa0523850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTCATTTTTTTTTATAAAAA+CGG | - | chr3_4:77305418-77305437 | Msa0523850:CDS | 10.0% |
| !! | GAAAAGTTAATATATTTATA+AGG | + | chr3_4:77306247-77306266 | None:intergenic | 10.0% |
| !!! | TAAAAAATTCTAGTTTTTTT+TGG | - | chr3_4:77306516-77306535 | Msa0523850:CDS | 10.0% |
| !!! | AAAAAATTCTAGTTTTTTTT+GGG | - | chr3_4:77306517-77306536 | Msa0523850:CDS | 10.0% |
| !! | ACAAAAATTAACTTAAAAAT+AGG | - | chr3_4:77306590-77306609 | Msa0523850:CDS | 10.0% |
| !! | CAAAAATTAACTTAAAAATA+GGG | - | chr3_4:77306591-77306610 | Msa0523850:CDS | 10.0% |
| !! | TGAAAAATTAGTATATTTAT+AGG | - | chr3_4:77306681-77306700 | Msa0523850:CDS | 10.0% |
| !! | GAAAAATTAGTATATTTATA+GGG | - | chr3_4:77306682-77306701 | Msa0523850:CDS | 10.0% |
| !!! | GTCATTTTTTTTTATAAAAA+CGG | - | chr3_4:77305418-77305437 | Msa0523850:CDS | 10.0% |
| !! | GAAAAGTTAATATATTTATA+AGG | + | chr3_4:77306247-77306266 | None:intergenic | 10.0% |
| !!! | TAAAAAATTCTAGTTTTTTT+TGG | - | chr3_4:77306516-77306535 | Msa0523850:CDS | 10.0% |
| !!! | AAAAAATTCTAGTTTTTTTT+GGG | - | chr3_4:77306517-77306536 | Msa0523850:CDS | 10.0% |
| !! | ACAAAAATTAACTTAAAAAT+AGG | - | chr3_4:77306590-77306609 | Msa0523850:CDS | 10.0% |
| !! | CAAAAATTAACTTAAAAATA+GGG | - | chr3_4:77306591-77306610 | Msa0523850:CDS | 10.0% |
| !! | TGAAAAATTAGTATATTTAT+AGG | - | chr3_4:77306681-77306700 | Msa0523850:CDS | 10.0% |
| !! | GAAAAATTAGTATATTTATA+GGG | - | chr3_4:77306682-77306701 | Msa0523850:CDS | 10.0% |
| !!! | AGTAGATAATTTTTTTTGAA+GGG | + | chr3_4:77306028-77306047 | None:intergenic | 15.0% |
| !!! | AAGTAGATAATTTTTTTTGA+AGG | + | chr3_4:77306029-77306048 | None:intergenic | 15.0% |
| !! | TGTTACAAAATATAAACAAA+AGG | - | chr3_4:77306068-77306087 | Msa0523850:intron | 15.0% |
| !!! | TACTTTTGTTTATATTTGTA+AGG | - | chr3_4:77306155-77306174 | Msa0523850:intron | 15.0% |
| !!! | ACTTTTGTTTATATTTGTAA+GGG | - | chr3_4:77306156-77306175 | Msa0523850:intron | 15.0% |
| !!! | ATGAATTTTTGTATTTTTGA+AGG | - | chr3_4:77306463-77306482 | Msa0523850:CDS | 15.0% |
| !!! | AGTAGATAATTTTTTTTGAA+GGG | + | chr3_4:77306028-77306047 | None:intergenic | 15.0% |
| !!! | AAGTAGATAATTTTTTTTGA+AGG | + | chr3_4:77306029-77306048 | None:intergenic | 15.0% |
| !! | TGTTACAAAATATAAACAAA+AGG | - | chr3_4:77306068-77306087 | Msa0523850:intron | 15.0% |
| !!! | TACTTTTGTTTATATTTGTA+AGG | - | chr3_4:77306155-77306174 | Msa0523850:intron | 15.0% |
| !!! | ACTTTTGTTTATATTTGTAA+GGG | - | chr3_4:77306156-77306175 | Msa0523850:intron | 15.0% |
| !!! | ATGAATTTTTGTATTTTTGA+AGG | - | chr3_4:77306463-77306482 | Msa0523850:CDS | 15.0% |
| !!! | ATGTGACTAATGTTTTAAAA+TGG | - | chr3_4:77305500-77305519 | Msa0523850:intron | 20.0% |
| !!! | TTGTTTATATTTTGTAACAG+AGG | + | chr3_4:77306067-77306086 | None:intergenic | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | + | chr3_4:77306133-77306152 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr3_4:77306338-77306357 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr3_4:77306339-77306358 | None:intergenic | 20.0% |
| !!! | TGGTGATTGAAAATTTTATA+GGG | - | chr3_4:77306622-77306641 | Msa0523850:CDS | 20.0% |
| !! | TCTTATAATAATAACTCTTC+TGG | - | chr3_4:77306814-77306833 | Msa0523850:intron | 20.0% |
| !! | CTTATAATAATAACTCTTCT+GGG | - | chr3_4:77306815-77306834 | Msa0523850:intron | 20.0% |
| !!! | ATGTGACTAATGTTTTAAAA+TGG | - | chr3_4:77305500-77305519 | Msa0523850:intron | 20.0% |
| !!! | TTGTTTATATTTTGTAACAG+AGG | + | chr3_4:77306067-77306086 | None:intergenic | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | + | chr3_4:77306133-77306152 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr3_4:77306338-77306357 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr3_4:77306339-77306358 | None:intergenic | 20.0% |
| !!! | TGGTGATTGAAAATTTTATA+GGG | - | chr3_4:77306622-77306641 | Msa0523850:CDS | 20.0% |
| !! | TCTTATAATAATAACTCTTC+TGG | - | chr3_4:77306814-77306833 | Msa0523850:intron | 20.0% |
| !! | CTTATAATAATAACTCTTCT+GGG | - | chr3_4:77306815-77306834 | Msa0523850:intron | 20.0% |
| !!! | TTTTTTTATAAAAACGGTCG+CGG | - | chr3_4:77305424-77305443 | Msa0523850:intron | 25.0% |
| !! | TTATATTTTGTAACAGAGGA+AGG | + | chr3_4:77306063-77306082 | None:intergenic | 25.0% |
| ! | TTTCCATAATACTATACTCT+TGG | + | chr3_4:77306183-77306202 | None:intergenic | 25.0% |
| !! | AAGAGTATAGTATTATGGAA+AGG | - | chr3_4:77306182-77306201 | Msa0523850:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr3_4:77306278-77306297 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr3_4:77306279-77306298 | None:intergenic | 25.0% |
| ! | TGAAAATGGGAAAATTTGAA+GGG | + | chr3_4:77306307-77306326 | None:intergenic | 25.0% |
| !! | AATTTTCCCATTTTCACTTT+TGG | - | chr3_4:77306311-77306330 | Msa0523850:intron | 25.0% |
| !! | GTGGTGATTGAAAATTTTAT+AGG | - | chr3_4:77306621-77306640 | Msa0523850:CDS | 25.0% |
| !! | TTCAGTACCAAGTTTTTATT+CGG | - | chr3_4:77306894-77306913 | Msa0523850:intron | 25.0% |
| ! | ACTTCAAAATGGAAAGATTA+TGG | - | chr3_4:77307012-77307031 | Msa0523850:CDS | 25.0% |
| !!! | TTTTTTTATAAAAACGGTCG+CGG | - | chr3_4:77305424-77305443 | Msa0523850:intron | 25.0% |
| !! | TTATATTTTGTAACAGAGGA+AGG | + | chr3_4:77306063-77306082 | None:intergenic | 25.0% |
| ! | TTTCCATAATACTATACTCT+TGG | + | chr3_4:77306183-77306202 | None:intergenic | 25.0% |
| !! | AAGAGTATAGTATTATGGAA+AGG | - | chr3_4:77306182-77306201 | Msa0523850:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr3_4:77306278-77306297 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr3_4:77306279-77306298 | None:intergenic | 25.0% |
| ! | TGAAAATGGGAAAATTTGAA+GGG | + | chr3_4:77306307-77306326 | None:intergenic | 25.0% |
| !! | AATTTTCCCATTTTCACTTT+TGG | - | chr3_4:77306311-77306330 | Msa0523850:intron | 25.0% |
| !! | GTGGTGATTGAAAATTTTAT+AGG | - | chr3_4:77306621-77306640 | Msa0523850:CDS | 25.0% |
| !! | TTCAGTACCAAGTTTTTATT+CGG | - | chr3_4:77306894-77306913 | Msa0523850:intron | 25.0% |
| ! | ACTTCAAAATGGAAAGATTA+TGG | - | chr3_4:77307012-77307031 | Msa0523850:CDS | 25.0% |
| ATTAAAGATCCAGATGCAAA+CGG | + | chr3_4:77305459-77305478 | None:intergenic | 30.0% | |
| AACATACACAGAAACATAAC+AGG | - | chr3_4:77305650-77305669 | Msa0523850:intron | 30.0% | |
| ! | TTTTCATTGGAAACTGATCT+TGG | + | chr3_4:77305787-77305806 | None:intergenic | 30.0% |
| ! | AGAAGAACTTGCATTTTCAT+TGG | + | chr3_4:77305800-77305819 | None:intergenic | 30.0% |
| TAAACCTTACAGAAACCATT+AGG | + | chr3_4:77305946-77305965 | None:intergenic | 30.0% | |
| GTGAAAATGGGAAAATTTGA+AGG | + | chr3_4:77306308-77306327 | None:intergenic | 30.0% | |
| TTAAAAATAGGGAGCAAAAG+TGG | - | chr3_4:77306602-77306621 | Msa0523850:CDS | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr3_4:77306637-77306656 | Msa0523850:CDS | 30.0% | |
| TATAGGGACTAAAAGTTGAA+GGG | - | chr3_4:77306638-77306657 | Msa0523850:CDS | 30.0% | |
| ! | AAGTTGAAGGGAAATTTTAG+AGG | - | chr3_4:77306650-77306669 | Msa0523850:CDS | 30.0% |
| ! | AGTTGAAGGGAAATTTTAGA+GGG | - | chr3_4:77306651-77306670 | Msa0523850:CDS | 30.0% |
| CAAAAGTGAACACTTCAAAA+TGG | - | chr3_4:77307001-77307020 | Msa0523850:CDS | 30.0% | |
| ATTAAAGATCCAGATGCAAA+CGG | + | chr3_4:77305459-77305478 | None:intergenic | 30.0% | |
| AACATACACAGAAACATAAC+AGG | - | chr3_4:77305650-77305669 | Msa0523850:intron | 30.0% | |
| ! | TTTTCATTGGAAACTGATCT+TGG | + | chr3_4:77305787-77305806 | None:intergenic | 30.0% |
| ! | AGAAGAACTTGCATTTTCAT+TGG | + | chr3_4:77305800-77305819 | None:intergenic | 30.0% |
| TAAACCTTACAGAAACCATT+AGG | + | chr3_4:77305946-77305965 | None:intergenic | 30.0% | |
| GTGAAAATGGGAAAATTTGA+AGG | + | chr3_4:77306308-77306327 | None:intergenic | 30.0% | |
| TTAAAAATAGGGAGCAAAAG+TGG | - | chr3_4:77306602-77306621 | Msa0523850:CDS | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr3_4:77306637-77306656 | Msa0523850:CDS | 30.0% | |
| TATAGGGACTAAAAGTTGAA+GGG | - | chr3_4:77306638-77306657 | Msa0523850:CDS | 30.0% | |
| ! | AAGTTGAAGGGAAATTTTAG+AGG | - | chr3_4:77306650-77306669 | Msa0523850:CDS | 30.0% |
| ! | AGTTGAAGGGAAATTTTAGA+GGG | - | chr3_4:77306651-77306670 | Msa0523850:CDS | 30.0% |
| CAAAAGTGAACACTTCAAAA+TGG | - | chr3_4:77307001-77307020 | Msa0523850:CDS | 30.0% | |
| CTTGACAGATATCACAAAGA+GGG | + | chr3_4:77305386-77305405 | None:intergenic | 35.0% | |
| ACTTGACAGATATCACAAAG+AGG | + | chr3_4:77305387-77305406 | None:intergenic | 35.0% | |
| ATAGAATCGCTCTATCTTCT+TGG | + | chr3_4:77305594-77305613 | None:intergenic | 35.0% | |
| GAAGCTTTCAAGCAATTCTT+TGG | - | chr3_4:77305690-77305709 | Msa0523850:intron | 35.0% | |
| ! | TTTGATCTAGAGTGGTTTCT+TGG | + | chr3_4:77305751-77305770 | None:intergenic | 35.0% |
| !! | TGTTTGCTTTTGATCTAGAG+TGG | + | chr3_4:77305759-77305778 | None:intergenic | 35.0% |
| AAATGCAAGTTCTTCTTGCA+TGG | - | chr3_4:77305804-77305823 | Msa0523850:intron | 35.0% | |
| TACCTGATTGAAACAATACC+TGG | - | chr3_4:77305883-77305902 | Msa0523850:intron | 35.0% | |
| ! | AACCAGGTATTGTTTCAATC+AGG | + | chr3_4:77305888-77305907 | None:intergenic | 35.0% |
| AAGTCTTCAAAACAGTAACC+AGG | + | chr3_4:77305904-77305923 | None:intergenic | 35.0% | |
| ! | GGTCCAAGAGTATAGTATTA+TGG | - | chr3_4:77306177-77306196 | Msa0523850:intron | 35.0% |
| TTGAAGGGACTAAAAGTTGA+AGG | + | chr3_4:77306292-77306311 | None:intergenic | 35.0% | |
| TGAAATTGTGCAGAAATACG+TGG | + | chr3_4:77306561-77306580 | None:intergenic | 35.0% | |
| GCAGAAGCAGAATCATTATT+CGG | - | chr3_4:77306868-77306887 | Msa0523850:intron | 35.0% | |
| GAGCTAATATTAGAAGGAGT+AGG | + | chr3_4:77306958-77306977 | None:intergenic | 35.0% | |
| TCCTTCTAATATTAGCTCAG+TGG | - | chr3_4:77306960-77306979 | Msa0523850:CDS | 35.0% | |
| ACCACTGAGCTAATATTAGA+AGG | + | chr3_4:77306964-77306983 | None:intergenic | 35.0% | |
| TCTAATATTAGCTCAGTGGT+TGG | - | chr3_4:77306964-77306983 | Msa0523850:CDS | 35.0% | |
| GATTATGGATGTACAGTTTC+AGG | - | chr3_4:77307027-77307046 | Msa0523850:CDS | 35.0% | |
| CTTGACAGATATCACAAAGA+GGG | + | chr3_4:77305386-77305405 | None:intergenic | 35.0% | |
| ACTTGACAGATATCACAAAG+AGG | + | chr3_4:77305387-77305406 | None:intergenic | 35.0% | |
| ATAGAATCGCTCTATCTTCT+TGG | + | chr3_4:77305594-77305613 | None:intergenic | 35.0% | |
| GAAGCTTTCAAGCAATTCTT+TGG | - | chr3_4:77305690-77305709 | Msa0523850:intron | 35.0% | |
| ! | TTTGATCTAGAGTGGTTTCT+TGG | + | chr3_4:77305751-77305770 | None:intergenic | 35.0% |
| !! | TGTTTGCTTTTGATCTAGAG+TGG | + | chr3_4:77305759-77305778 | None:intergenic | 35.0% |
| AAATGCAAGTTCTTCTTGCA+TGG | - | chr3_4:77305804-77305823 | Msa0523850:intron | 35.0% | |
| TACCTGATTGAAACAATACC+TGG | - | chr3_4:77305883-77305902 | Msa0523850:intron | 35.0% | |
| ! | AACCAGGTATTGTTTCAATC+AGG | + | chr3_4:77305888-77305907 | None:intergenic | 35.0% |
| AAGTCTTCAAAACAGTAACC+AGG | + | chr3_4:77305904-77305923 | None:intergenic | 35.0% | |
| ! | GGTCCAAGAGTATAGTATTA+TGG | - | chr3_4:77306177-77306196 | Msa0523850:intron | 35.0% |
| TTGAAGGGACTAAAAGTTGA+AGG | + | chr3_4:77306292-77306311 | None:intergenic | 35.0% | |
| TGAAATTGTGCAGAAATACG+TGG | + | chr3_4:77306561-77306580 | None:intergenic | 35.0% | |
| GCAGAAGCAGAATCATTATT+CGG | - | chr3_4:77306868-77306887 | Msa0523850:intron | 35.0% | |
| GAGCTAATATTAGAAGGAGT+AGG | + | chr3_4:77306958-77306977 | None:intergenic | 35.0% | |
| TCCTTCTAATATTAGCTCAG+TGG | - | chr3_4:77306960-77306979 | Msa0523850:CDS | 35.0% | |
| ACCACTGAGCTAATATTAGA+AGG | + | chr3_4:77306964-77306983 | None:intergenic | 35.0% | |
| TCTAATATTAGCTCAGTGGT+TGG | - | chr3_4:77306964-77306983 | Msa0523850:CDS | 35.0% | |
| GATTATGGATGTACAGTTTC+AGG | - | chr3_4:77307027-77307046 | Msa0523850:CDS | 35.0% | |
| CTTTCTCACACACATCACAT+TGG | + | chr3_4:77305230-77305249 | None:intergenic | 40.0% | |
| TTCATCTGAAGGACAGAACA+TGG | + | chr3_4:77305262-77305281 | None:intergenic | 40.0% | |
| GGATTGTATGATCACATCCA+TGG | + | chr3_4:77305296-77305315 | None:intergenic | 40.0% | |
| GAGAGAAAAACGAGTGTGTT+TGG | + | chr3_4:77305340-77305359 | None:intergenic | 40.0% | |
| ATCACAAAGAGGGTAGTCTT+TGG | + | chr3_4:77305376-77305395 | None:intergenic | 40.0% | |
| TATAAAAACGGTCGCGGTAA+AGG | - | chr3_4:77305430-77305449 | Msa0523850:intron | 40.0% | |
| ! | AATATCGTGCGCTTTTGTAC+AGG | - | chr3_4:77305546-77305565 | Msa0523850:intron | 40.0% |
| TGTTCATTTGCTCCATGGAT+TGG | + | chr3_4:77305634-77305653 | None:intergenic | 40.0% | |
| GTGTATGTTCATTTGCTCCA+TGG | + | chr3_4:77305639-77305658 | None:intergenic | 40.0% | |
| CATAACAGGTTTCTTCTCTC+TGG | - | chr3_4:77305664-77305683 | Msa0523850:intron | 40.0% | |
| ! | TACTGGTGGATGATGAATCT+GGG | + | chr3_4:77305717-77305736 | None:intergenic | 40.0% |
| ! | ATACTGGTGGATGATGAATC+TGG | + | chr3_4:77305718-77305737 | None:intergenic | 40.0% |
| GATTCATCATCCACCAGTAT+TGG | - | chr3_4:77305718-77305737 | Msa0523850:intron | 40.0% | |
| CCTTACAGAAACCATTAGGT+GGG | + | chr3_4:77305942-77305961 | None:intergenic | 40.0% | |
| ACCTTACAGAAACCATTAGG+TGG | + | chr3_4:77305943-77305962 | None:intergenic | 40.0% | |
| GAGGGACCAAAAGTGAAAAT+GGG | + | chr3_4:77306320-77306339 | None:intergenic | 40.0% | |
| AGAGGGACCAAAAGTGAAAA+TGG | + | chr3_4:77306321-77306340 | None:intergenic | 40.0% | |
| !! | AGAGGTGCCGAATAAAAACT+TGG | + | chr3_4:77306904-77306923 | None:intergenic | 40.0% |
| CTTTCTCACACACATCACAT+TGG | + | chr3_4:77305230-77305249 | None:intergenic | 40.0% | |
| TTCATCTGAAGGACAGAACA+TGG | + | chr3_4:77305262-77305281 | None:intergenic | 40.0% | |
| GGATTGTATGATCACATCCA+TGG | + | chr3_4:77305296-77305315 | None:intergenic | 40.0% | |
| GAGAGAAAAACGAGTGTGTT+TGG | + | chr3_4:77305340-77305359 | None:intergenic | 40.0% | |
| ATCACAAAGAGGGTAGTCTT+TGG | + | chr3_4:77305376-77305395 | None:intergenic | 40.0% | |
| TATAAAAACGGTCGCGGTAA+AGG | - | chr3_4:77305430-77305449 | Msa0523850:intron | 40.0% | |
| ! | AATATCGTGCGCTTTTGTAC+AGG | - | chr3_4:77305546-77305565 | Msa0523850:intron | 40.0% |
| TGTTCATTTGCTCCATGGAT+TGG | + | chr3_4:77305634-77305653 | None:intergenic | 40.0% | |
| GTGTATGTTCATTTGCTCCA+TGG | + | chr3_4:77305639-77305658 | None:intergenic | 40.0% | |
| CATAACAGGTTTCTTCTCTC+TGG | - | chr3_4:77305664-77305683 | Msa0523850:intron | 40.0% | |
| ! | TACTGGTGGATGATGAATCT+GGG | + | chr3_4:77305717-77305736 | None:intergenic | 40.0% |
| ! | ATACTGGTGGATGATGAATC+TGG | + | chr3_4:77305718-77305737 | None:intergenic | 40.0% |
| GATTCATCATCCACCAGTAT+TGG | - | chr3_4:77305718-77305737 | Msa0523850:intron | 40.0% | |
| CCTTACAGAAACCATTAGGT+GGG | + | chr3_4:77305942-77305961 | None:intergenic | 40.0% | |
| ACCTTACAGAAACCATTAGG+TGG | + | chr3_4:77305943-77305962 | None:intergenic | 40.0% | |
| GAGGGACCAAAAGTGAAAAT+GGG | + | chr3_4:77306320-77306339 | None:intergenic | 40.0% | |
| AGAGGGACCAAAAGTGAAAA+TGG | + | chr3_4:77306321-77306340 | None:intergenic | 40.0% | |
| !! | AGAGGTGCCGAATAAAAACT+TGG | + | chr3_4:77306904-77306923 | None:intergenic | 40.0% |
| TGATGTGTGTGAGAAAGCTG+AGG | - | chr3_4:77305233-77305252 | Msa0523850:CDS | 45.0% | |
| CAAAGAGCAGCTTCATCTGA+AGG | + | chr3_4:77305273-77305292 | None:intergenic | 45.0% | |
| GTGTTTGGTTGCAAGCTTGT+TGG | + | chr3_4:77305325-77305344 | None:intergenic | 45.0% | |
| ! | TAAAGGTTGCCGTTTGCATC+TGG | - | chr3_4:77305447-77305466 | Msa0523850:intron | 45.0% |
| GAATGTGACCTTCCAATCCA+TGG | - | chr3_4:77305619-77305638 | Msa0523850:intron | 45.0% | |
| !! | CATTTGCTCCATGGATTGGA+AGG | + | chr3_4:77305630-77305649 | None:intergenic | 45.0% |
| TCTTGGTTCAGAGCCAATAC+TGG | + | chr3_4:77305734-77305753 | None:intergenic | 45.0% | |
| TTGCATGGCTGAAGACAACA+TGG | - | chr3_4:77305819-77305838 | Msa0523850:intron | 45.0% | |
| GATGCTTCTTTCCCACCTAA+TGG | - | chr3_4:77305928-77305947 | Msa0523850:intron | 45.0% | |
| CCCACCTAATGGTTTCTGTA+AGG | - | chr3_4:77305939-77305958 | Msa0523850:intron | 45.0% | |
| TGATGTGTGTGAGAAAGCTG+AGG | - | chr3_4:77305233-77305252 | Msa0523850:CDS | 45.0% | |
| CAAAGAGCAGCTTCATCTGA+AGG | + | chr3_4:77305273-77305292 | None:intergenic | 45.0% | |
| GTGTTTGGTTGCAAGCTTGT+TGG | + | chr3_4:77305325-77305344 | None:intergenic | 45.0% | |
| ! | TAAAGGTTGCCGTTTGCATC+TGG | - | chr3_4:77305447-77305466 | Msa0523850:intron | 45.0% |
| GAATGTGACCTTCCAATCCA+TGG | - | chr3_4:77305619-77305638 | Msa0523850:intron | 45.0% | |
| !! | CATTTGCTCCATGGATTGGA+AGG | + | chr3_4:77305630-77305649 | None:intergenic | 45.0% |
| TCTTGGTTCAGAGCCAATAC+TGG | + | chr3_4:77305734-77305753 | None:intergenic | 45.0% | |
| TTGCATGGCTGAAGACAACA+TGG | - | chr3_4:77305819-77305838 | Msa0523850:intron | 45.0% | |
| GATGCTTCTTTCCCACCTAA+TGG | - | chr3_4:77305928-77305947 | Msa0523850:intron | 45.0% | |
| CCCACCTAATGGTTTCTGTA+AGG | - | chr3_4:77305939-77305958 | Msa0523850:intron | 45.0% | |
| !! | ATAAATTTAAGTATAATAAA+GGG | + | chr3_4:77305981-77306000 | None:intergenic | 5.0% |
| !! | TATAAATTTAAGTATAATAA+AGG | + | chr3_4:77305982-77306001 | None:intergenic | 5.0% |
| !!! | ATAATGTAATATTTTAATAA+GGG | + | chr3_4:77306725-77306744 | None:intergenic | 5.0% |
| !!! | AATAATGTAATATTTTAATA+AGG | + | chr3_4:77306726-77306745 | None:intergenic | 5.0% |
| !! | ATAAATTTAAGTATAATAAA+GGG | + | chr3_4:77305981-77306000 | None:intergenic | 5.0% |
| !! | TATAAATTTAAGTATAATAA+AGG | + | chr3_4:77305982-77306001 | None:intergenic | 5.0% |
| !!! | ATAATGTAATATTTTAATAA+GGG | + | chr3_4:77306725-77306744 | None:intergenic | 5.0% |
| !!! | AATAATGTAATATTTTAATA+AGG | + | chr3_4:77306726-77306745 | None:intergenic | 5.0% |
| GATGAAGCTGCTCTTTGCCA+TGG | - | chr3_4:77305276-77305295 | Msa0523850:CDS | 50.0% | |
| !! | TGGTTGCAAGCTTGTTGGCA+CGG | + | chr3_4:77305320-77305339 | None:intergenic | 50.0% |
| !! | GGTAGTCTTTGGAGTTGAGG+TGG | + | chr3_4:77305365-77305384 | None:intergenic | 50.0% |
| !! | GAGGGTAGTCTTTGGAGTTG+AGG | + | chr3_4:77305368-77305387 | None:intergenic | 50.0% |
| TGGTTCAGAGCCAATACTGG+TGG | + | chr3_4:77305731-77305750 | None:intergenic | 50.0% | |
| GACAACATGGCTAGTGACAC+TGG | - | chr3_4:77305832-77305851 | Msa0523850:intron | 50.0% | |
| ! | TTATTCGGCACCTCTAGCTC+AGG | - | chr3_4:77306909-77306928 | Msa0523850:CDS | 50.0% |
| GATGAAGCTGCTCTTTGCCA+TGG | - | chr3_4:77305276-77305295 | Msa0523850:CDS | 50.0% | |
| !! | TGGTTGCAAGCTTGTTGGCA+CGG | + | chr3_4:77305320-77305339 | None:intergenic | 50.0% |
| !! | GGTAGTCTTTGGAGTTGAGG+TGG | + | chr3_4:77305365-77305384 | None:intergenic | 50.0% |
| !! | GAGGGTAGTCTTTGGAGTTG+AGG | + | chr3_4:77305368-77305387 | None:intergenic | 50.0% |
| TGGTTCAGAGCCAATACTGG+TGG | + | chr3_4:77305731-77305750 | None:intergenic | 50.0% | |
| GACAACATGGCTAGTGACAC+TGG | - | chr3_4:77305832-77305851 | Msa0523850:intron | 50.0% | |
| ! | TTATTCGGCACCTCTAGCTC+AGG | - | chr3_4:77306909-77306928 | Msa0523850:CDS | 50.0% |
| !! | TTGCAAGCTTGTTGGCACGG+TGG | + | chr3_4:77305317-77305336 | None:intergenic | 55.0% |
| ! | CGTGCGCTTTTGTACAGGAG+AGG | - | chr3_4:77305551-77305570 | Msa0523850:intron | 55.0% |
| ! | GCTTTTGTACAGGAGAGGCG+TGG | - | chr3_4:77305556-77305575 | Msa0523850:intron | 55.0% |
| ! | GCTGATTCAGCCTGAGCTAG+AGG | + | chr3_4:77306922-77306941 | None:intergenic | 55.0% |
| !! | TTGCAAGCTTGTTGGCACGG+TGG | + | chr3_4:77305317-77305336 | None:intergenic | 55.0% |
| ! | CGTGCGCTTTTGTACAGGAG+AGG | - | chr3_4:77305551-77305570 | Msa0523850:intron | 55.0% |
| ! | GCTTTTGTACAGGAGAGGCG+TGG | - | chr3_4:77305556-77305575 | Msa0523850:intron | 55.0% |
| ! | GCTGATTCAGCCTGAGCTAG+AGG | + | chr3_4:77306922-77306941 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77305219 | 77307092 | 77305219 | ID=Msa0523850;Name=Msa0523850 |
| chr3_4 | mRNA | 77305219 | 77307092 | 77305219 | ID=Msa0523850-mRNA-1;Parent=Msa0523850;Name=Msa0523850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|262 |
| chr3_4 | exon | 77306907 | 77307092 | 77306907 | ID=Msa0523850-mRNA-1:exon:22626;Parent=Msa0523850-mRNA-1 |
| chr3_4 | exon | 77306362 | 77306743 | 77306362 | ID=Msa0523850-mRNA-1:exon:22625;Parent=Msa0523850-mRNA-1 |
| chr3_4 | exon | 77305219 | 77305439 | 77305219 | ID=Msa0523850-mRNA-1:exon:22624;Parent=Msa0523850-mRNA-1 |
| chr3_4 | CDS | 77306907 | 77307092 | 77306907 | ID=Msa0523850-mRNA-1:cds;Parent=Msa0523850-mRNA-1 |
| chr3_4 | CDS | 77306362 | 77306743 | 77306362 | ID=Msa0523850-mRNA-1:cds;Parent=Msa0523850-mRNA-1 |
| chr3_4 | CDS | 77305219 | 77305439 | 77305219 | ID=Msa0523850-mRNA-1:cds;Parent=Msa0523850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
