Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366950 | RHN44987.1 | 94.862 | 253 | 13 | 0 | 1 | 253 | 1 | 253 | 5.52e-179 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366950 | sp|Q7ZZ00|ZN511_DANRE | 33.766 | 231 | 131 | 5 | 13 | 230 | 49 | 270 | 1.29e-34 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366950 | A0A396H268 | 94.862 | 253 | 13 | 0 | 1 | 253 | 1 | 253 | 2.64e-179 | 502 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1366950 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1366950 | Msa1388140 | 0.984108 | 1.306487e-159 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366950 | MtrunA17_Chr7g0225371 | 94.862 | 253 | 13 | 0 | 1 | 253 | 1 | 253 | 0.0 | 502 |
| Msa1366950 | MtrunA17_Chr7g0225251 | 95.213 | 188 | 9 | 0 | 66 | 253 | 5 | 192 | 7.40e-134 | 375 |
| Msa1366950 | MtrunA17_Chr7g0225341 | 76.577 | 111 | 24 | 2 | 136 | 245 | 8 | 117 | 2.99e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366950 | AT5G14140.1 | 61.943 | 247 | 85 | 4 | 11 | 249 | 14 | 259 | 4.81e-107 | 310 |
Find 76 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATGATTCTTTCTTTC+AGG | 0.183557 | tig0018509:-210030 | Msa1366950:CDS |
| GAAGTCTTCTGTCCCATTGC+TGG | 0.271752 | tig0018509:-210179 | Msa1366950:CDS |
| GTGTTGGAATTTACGAGAAA+TGG | 0.316280 | tig0018509:+211469 | None:intergenic |
| TGCTGGGTGTGGAGCACGTT+TGG | 0.380745 | tig0018509:-210162 | Msa1366950:CDS |
| ATGGGCACAAAACCTATGTT+AGG | 0.380856 | tig0018509:+208566 | None:intergenic |
| TTTATCCTGTGTTTCTTTGA+AGG | 0.386367 | tig0018509:+208993 | None:intergenic |
| TTCTGTCCCATTGCTGGGTG+TGG | 0.397837 | tig0018509:-210173 | Msa1366950:CDS |
| CAAAACGGAAAATTTGAATC+CGG | 0.397939 | tig0018509:+211497 | None:intergenic |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | tig0018509:+208829 | None:intergenic |
| GTAAGCTTATTTCTTAGTAA+TGG | 0.406814 | tig0018509:+208758 | None:intergenic |
| TCTCAAAAGGAGGATACTTC+AGG | 0.418130 | tig0018509:-208951 | Msa1366950:CDS |
| CGAGAAATGGGTTTCCAAAA+CGG | 0.423576 | tig0018509:+211482 | None:intergenic |
| ATGCAGTATGTCTTGCATTA+TGG | 0.426087 | tig0018509:+210114 | None:intergenic |
| ACGAGAACTTCTTGTCAAAC+AGG | 0.437900 | tig0018509:-211414 | Msa1366950:intron |
| TGTTGGAATTTACGAGAAAT+GGG | 0.440882 | tig0018509:+211470 | None:intergenic |
| ACTCCTTCCTCTATCAGCTT+TGG | 0.443914 | tig0018509:-208855 | Msa1366950:CDS |
| ATTGCTTATTGATCGATCTT+CGG | 0.450297 | tig0018509:-208710 | Msa1366950:three_prime_UTR |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | tig0018509:+210091 | None:intergenic |
| AAGTCTTCTGTCCCATTGCT+GGG | 0.459510 | tig0018509:-210178 | Msa1366950:CDS |
| TGTTTAGCTTATATTCACTT+TGG | 0.465598 | tig0018509:-208485 | Msa1366950:three_prime_UTR |
| AGCACGTTTGGCTTCAATTG+AGG | 0.468334 | tig0018509:-210150 | Msa1366950:CDS |
| TATGTAAGTGTCCCTAACAT+AGG | 0.476678 | tig0018509:-208578 | Msa1366950:three_prime_UTR |
| GGAGGATACTTCAGGAATGA+TGG | 0.477569 | tig0018509:-208943 | Msa1366950:CDS |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | tig0018509:+208821 | None:intergenic |
| GGAAGTGGAAAATCAAAATC+CGG | 0.482912 | tig0018509:-211516 | Msa1366950:CDS |
| CTGGCACCATTTGCAAAGCT+TGG | 0.484495 | tig0018509:+208381 | None:intergenic |
| AAAGAAAGAATCATGAGCTT+CGG | 0.485050 | tig0018509:+210034 | None:intergenic |
| ATTAGCAGATATAATTTGCA+TGG | 0.496292 | tig0018509:+208547 | None:intergenic |
| TGACAAGAAGTTCTCGTTCG+AGG | 0.497533 | tig0018509:+211420 | None:intergenic |
| AATTCAAAAGCTACAAAAGT+AGG | 0.497972 | tig0018509:-209079 | Msa1366950:CDS |
| CGTGCTCCACACCCAGCAAT+GGG | 0.505775 | tig0018509:+210167 | None:intergenic |
| ACAAGAGAAGGAACAGTTTG+AGG | 0.507962 | tig0018509:-211248 | Msa1366950:CDS |
| ATCAGAAAATAGAATCATGC+TGG | 0.508550 | tig0018509:-208627 | Msa1366950:three_prime_UTR |
| CGAGCTGTTCAGCGTGGGAA+GGG | 0.513540 | tig0018509:-208798 | Msa1366950:CDS |
| TTGCAAAATTGCTCTATACC+AGG | 0.513899 | tig0018509:-208676 | Msa1366950:three_prime_UTR |
| TCGAGCTGTTCAGCGTGGGA+AGG | 0.516848 | tig0018509:-208799 | Msa1366950:CDS |
| GATTCACCTTTCTTCGCTAT+CGG | 0.518189 | tig0018509:-211446 | Msa1366950:CDS |
| TTAATTTGAAAAGGTTGCGT+TGG | 0.527267 | tig0018509:-211284 | Msa1366950:intron |
| GAATGCTTAGTGGAAGGTTG+CGG | 0.528977 | tig0018509:-209107 | Msa1366950:CDS |
| ATATTAGTATGAATGCTTAG+TGG | 0.534106 | tig0018509:-209117 | Msa1366950:intron |
| CGAAGAAAGGTGAATCGTGT+TGG | 0.535030 | tig0018509:+211453 | None:intergenic |
| TTCCCACGCTGAACAGCTCG+AGG | 0.542891 | tig0018509:+208801 | None:intergenic |
| GCGTGGGAAGGGATCTAACT+CGG | 0.545220 | tig0018509:-208787 | Msa1366950:CDS |
| TGAATACCAAGCTTTGCAAA+TGG | 0.550337 | tig0018509:-208387 | Msa1366950:three_prime_UTR |
| TCCCTCGAGCTGTTCAGCGT+GGG | 0.551783 | tig0018509:-208803 | Msa1366950:CDS |
| ATTTGAATTAACACAAGAGA+AGG | 0.553168 | tig0018509:-211260 | Msa1366950:CDS |
| CTCTGCCTTCAAAGAAACAC+AGG | 0.556458 | tig0018509:-208998 | Msa1366950:CDS |
| GGTTGAACCAACGATGGAAG+TGG | 0.559043 | tig0018509:-211531 | None:intergenic |
| ACGTGCTCCACACCCAGCAA+TGG | 0.559174 | tig0018509:+210166 | None:intergenic |
| ACGGCGACCAAAGCTGATAG+AGG | 0.559633 | tig0018509:+208848 | None:intergenic |
| TACTTCAGGAATGATGGAAG+TGG | 0.560728 | tig0018509:-208937 | Msa1366950:CDS |
| GGAAGTGGAAAATGCAGCTA+TGG | 0.560741 | tig0018509:-208922 | Msa1366950:CDS |
| TGGGCACAAAACCTATGTTA+GGG | 0.565786 | tig0018509:+208567 | None:intergenic |
| TAGTATGAATGCTTAGTGGA+AGG | 0.567041 | tig0018509:-209113 | Msa1366950:CDS |
| AATAAATGTCAACAAGAAGC+TGG | 0.567276 | tig0018509:+208362 | None:intergenic |
| ACTTGATACAAGAGGATGAA+AGG | 0.567423 | tig0018509:-211225 | Msa1366950:intron |
| CGTGGGAAGGGATCTAACTC+GGG | 0.575940 | tig0018509:-208786 | Msa1366950:CDS |
| TTAGCAGATATAATTTGCAT+GGG | 0.576863 | tig0018509:+208548 | None:intergenic |
| GTCCCTCGAGCTGTTCAGCG+TGG | 0.579249 | tig0018509:-208804 | Msa1366950:CDS |
| TGCAAAATTGCTCTATACCA+GGG | 0.579873 | tig0018509:-208675 | Msa1366950:three_prime_UTR |
| AGGTTACCGATAGCGAAGAA+AGG | 0.581308 | tig0018509:+211440 | None:intergenic |
| ACTAAGAAATAAGCTTACAC+TGG | 0.594361 | tig0018509:-208753 | Msa1366950:exon |
| CGACCAAAGCTGATAGAGGA+AGG | 0.601809 | tig0018509:+208852 | None:intergenic |
| AGTGTCTAGATTAAATACTT+CGG | 0.602650 | tig0018509:-208883 | Msa1366950:CDS |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | tig0018509:+210064 | None:intergenic |
| ATCTAGACACTGCTGAAACA+AGG | 0.610308 | tig0018509:+208895 | None:intergenic |
| GTTTGAGGACTTGATACAAG+AGG | 0.614127 | tig0018509:-211233 | Msa1366950:CDS |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | tig0018509:-208837 | Msa1366950:CDS |
| AATTATATCTGCTAATGATG+TGG | 0.622983 | tig0018509:-208540 | Msa1366950:three_prime_UTR |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | tig0018509:+210065 | None:intergenic |
| TCCCACGCTGAACAGCTCGA+GGG | 0.633991 | tig0018509:+208802 | None:intergenic |
| AGTTGCACGTGGCTATGACA+TGG | 0.642662 | tig0018509:-210003 | Msa1366950:intron |
| AGAAAATAGAATCATGCTGG+AGG | 0.643059 | tig0018509:-208624 | Msa1366950:three_prime_UTR |
| AAAGCTGATAGAGGAAGGAG+TGG | 0.665134 | tig0018509:+208857 | None:intergenic |
| TTTCAGGCAAAAGTTGCACG+TGG | 0.671699 | tig0018509:-210014 | Msa1366950:CDS |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | tig0018509:+210066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATTTATACTTATAAAA+TGG | - | tig0018509:209622-209641 | Msa1366950:intron | 10.0% |
| !! | TCATTAAATTAAATCATATT+TGG | + | tig0018509:209908-209927 | None:intergenic | 10.0% |
| !! | AAATAAAATAGTAAACAAAA+AGG | + | tig0018509:210442-210461 | None:intergenic | 10.0% |
| !!! | TATTCTAATACCTATTATTT+TGG | + | tig0018509:209031-209050 | None:intergenic | 15.0% |
| !! | AAATAATAGGTATTAGAATA+AGG | - | tig0018509:209031-209050 | Msa1366950:CDS | 15.0% |
| !! | TATATCTATAATCATTTATG+TGG | - | tig0018509:209382-209401 | Msa1366950:intron | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | - | tig0018509:209910-209929 | Msa1366950:intron | 15.0% |
| !!! | GTAAGATTTTAAATTAAAGT+AGG | + | tig0018509:210007-210026 | None:intergenic | 15.0% |
| !! | AAATTAAATAGAAGATAGAA+AGG | + | tig0018509:210109-210128 | None:intergenic | 15.0% |
| !! | ATTTATATTCTCGATTAATG+TGG | - | tig0018509:208730-208749 | Msa1366950:three_prime_UTR | 20.0% |
| !!! | ATTCTAGTTCTCAAAATAAA+AGG | + | tig0018509:208994-209013 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGAACTATAAGAA+AGG | + | tig0018509:209354-209373 | None:intergenic | 20.0% |
| !!! | TGTTGATAAAATATACACTT+TGG | + | tig0018509:209501-209520 | None:intergenic | 20.0% |
| !! | AAACAACCAAATTGTAAAAA+TGG | + | tig0018509:210048-210067 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAATCAAAGATT+GGG | + | tig0018509:210289-210308 | None:intergenic | 20.0% |
| !!! | ATGATTTTGAAATCAAAGAT+TGG | + | tig0018509:210290-210309 | None:intergenic | 20.0% |
| !! | AGAAAGAAATTCATTAACAT+GGG | + | tig0018509:210414-210433 | None:intergenic | 20.0% |
| !! | AAGAAAGAAATTCATTAACA+TGG | + | tig0018509:210415-210434 | None:intergenic | 20.0% |
| !! | CATTATAGATAATTAACGAT+AGG | - | tig0018509:210564-210583 | Msa1366950:intron | 20.0% |
| !! | AAGCTAACATATTACTTATT+TGG | - | tig0018509:210656-210675 | Msa1366950:intron | 20.0% |
| !!! | ACATATGATTTTTCTCTATT+AGG | - | tig0018509:210683-210702 | Msa1366950:intron | 20.0% |
| !!! | ACTTGCGTTTTAATTTGAAA+AGG | - | tig0018509:208573-208592 | Msa1366950:three_prime_UTR | 25.0% |
| ! | ATTTGAATTAACACAAGAGA+AGG | - | tig0018509:208606-208625 | Msa1366950:three_prime_UTR | 25.0% |
| ! | TAAGAATATGAAGAAGAAGA+AGG | + | tig0018509:208693-208712 | None:intergenic | 25.0% |
| ! | ATAAAAGGACTCTAGTAATA+TGG | + | tig0018509:208979-208998 | None:intergenic | 25.0% |
| ! | AGAGTTAAGACCAAAATAAT+AGG | - | tig0018509:209018-209037 | Msa1366950:CDS | 25.0% |
| ! | GTTTGAGTAAGAACTAATAA+TGG | + | tig0018509:209216-209235 | None:intergenic | 25.0% |
| !! | TTTTCCTAGAAGTTAATCTT+TGG | - | tig0018509:209597-209616 | Msa1366950:intron | 25.0% |
| ! | AAGCAATATGTTACAAAATG+AGG | + | tig0018509:209659-209678 | None:intergenic | 25.0% |
| !!! | GAAAGACCATTTTTACAATT+TGG | - | tig0018509:210039-210058 | Msa1366950:CDS | 25.0% |
| !! | TGGGTTGTTATTAGTTATTA+CGG | + | tig0018509:210395-210414 | None:intergenic | 25.0% |
| !!! | TCATATTTGAGTTTGTTAGA+AGG | - | tig0018509:210474-210493 | Msa1366950:intron | 25.0% |
| ! | AAATGACAATCTCTATAACA+TGG | - | tig0018509:210710-210729 | Msa1366950:intron | 25.0% |
| ! | ATATTAGTATGAATGCTTAG+TGG | - | tig0018509:210749-210768 | Msa1366950:intron | 25.0% |
| ! | AATTCAAAAGCTACAAAAGT+AGG | - | tig0018509:210787-210806 | Msa1366950:intron | 25.0% |
| ! | AGTGTCTAGATTAAATACTT+CGG | - | tig0018509:210983-211002 | Msa1366950:intron | 25.0% |
| !! | GTAAGCTTATTTCTTAGTAA+TGG | + | tig0018509:211111-211130 | None:intergenic | 25.0% |
| !! | TTAGCAGATATAATTTGCAT+GGG | + | tig0018509:211321-211340 | None:intergenic | 25.0% |
| !! | ATTAGCAGATATAATTTGCA+TGG | + | tig0018509:211322-211341 | None:intergenic | 25.0% |
| ! | AATTATATCTGCTAATGATG+TGG | - | tig0018509:211326-211345 | Msa1366950:intron | 25.0% |
| !! | TGTTTAGCTTATATTCACTT+TGG | - | tig0018509:211381-211400 | Msa1366950:intron | 25.0% |
| CAAAACGGAAAATTTGAATC+CGG | + | tig0018509:208372-208391 | None:intergenic | 30.0% | |
| TGTTGGAATTTACGAGAAAT+GGG | + | tig0018509:208399-208418 | None:intergenic | 30.0% | |
| ! | TTAATTTGAAAAGGTTGCGT+TGG | - | tig0018509:208582-208601 | Msa1366950:three_prime_UTR | 30.0% |
| TGGTTAATAGACTTCAGTTA+AGG | - | tig0018509:208872-208891 | Msa1366950:CDS | 30.0% | |
| ! | TCTTTGAGAACAGTTAATGA+TGG | - | tig0018509:209274-209293 | Msa1366950:intron | 30.0% |
| !! | GTGGAAAAACACATTTTGAT+TGG | - | tig0018509:209401-209420 | Msa1366950:intron | 30.0% |
| CACAATCTTCAATAAACATG+AGG | + | tig0018509:209575-209594 | None:intergenic | 30.0% | |
| AAAGCCAAAGATTAACTTCT+AGG | + | tig0018509:209604-209623 | None:intergenic | 30.0% | |
| AAAGAAAGAATCATGAGCTT+CGG | + | tig0018509:209835-209854 | None:intergenic | 30.0% | |
| !! | TCATAGTTGAGTTTGTTAGA+AGG | - | tig0018509:210141-210160 | Msa1366950:CDS | 30.0% |
| AAAGATAGTCCATTAGTTAG+TGG | - | tig0018509:210175-210194 | Msa1366950:CDS | 30.0% | |
| !! | TTAGCTTTACCACTAACTAA+TGG | + | tig0018509:210187-210206 | None:intergenic | 30.0% |
| TATAGGCCAAACAATTAAGA+AGG | - | tig0018509:210219-210238 | Msa1366950:intron | 30.0% | |
| CCAAATCCTTCTTAATTGTT+TGG | + | tig0018509:210228-210247 | None:intergenic | 30.0% | |
| CCAAACAATTAAGAAGGATT+TGG | - | tig0018509:210225-210244 | Msa1366950:intron | 30.0% | |
| TATTACACAGAGATAACATG+AGG | + | tig0018509:210365-210384 | None:intergenic | 30.0% | |
| TTGTTAGAAGGAAGATCAAA+TGG | - | tig0018509:210486-210505 | Msa1366950:intron | 30.0% | |
| ATTTGACCTATAACTTTCTC+TGG | + | tig0018509:210544-210563 | None:intergenic | 30.0% | |
| TTTATCCTGTGTTTCTTTGA+AGG | + | tig0018509:210876-210895 | None:intergenic | 30.0% | |
| GAACAAAAAACCTTCTCAAA+AGG | - | tig0018509:210902-210921 | Msa1366950:intron | 30.0% | |
| ACTAAGAAATAAGCTTACAC+TGG | - | tig0018509:211113-211132 | Msa1366950:intron | 30.0% | |
| ATTGCTTATTGATCGATCTT+CGG | - | tig0018509:211156-211175 | Msa1366950:intron | 30.0% | |
| ! | GTATAGAGCAATTTTGCAAT+GGG | + | tig0018509:211189-211208 | None:intergenic | 30.0% |
| ATCAGAAAATAGAATCATGC+TGG | - | tig0018509:211239-211258 | Msa1366950:CDS | 30.0% | |
| AATAAATGTCAACAAGAAGC+TGG | + | tig0018509:211507-211526 | None:intergenic | 30.0% | |
| GGAAGTGGAAAATCAAAATC+CGG | - | tig0018509:208350-208369 | Msa1366950:three_prime_UTR | 35.0% | |
| ! | CGGATTCAAATTTTCCGTTT+TGG | - | tig0018509:208370-208389 | Msa1366950:three_prime_UTR | 35.0% |
| GTGTTGGAATTTACGAGAAA+TGG | + | tig0018509:208400-208419 | None:intergenic | 35.0% | |
| ACTTGATACAAGAGGATGAA+AGG | - | tig0018509:208641-208660 | Msa1366950:three_prime_UTR | 35.0% | |
| CAATAAGGCTCGGAATATTA+AGG | + | tig0018509:208796-208815 | None:intergenic | 35.0% | |
| CAAGTTAGACGAACACAATA+AGG | + | tig0018509:208811-208830 | None:intergenic | 35.0% | |
| ACTATATGATTGTGCTCTAG+TGG | - | tig0018509:208852-208871 | Msa1366950:CDS | 35.0% | |
| AAACTTTATATACCTCCCAG+CGG | - | tig0018509:208949-208968 | Msa1366950:CDS | 35.0% | |
| TAGTAATATGGAATTCCGCT+GGG | + | tig0018509:208967-208986 | None:intergenic | 35.0% | |
| TAGAATAAGGCGTGCTAATT+TGG | - | tig0018509:209044-209063 | Msa1366950:CDS | 35.0% | |
| AGAATAAGGCGTGCTAATTT+GGG | - | tig0018509:209045-209064 | Msa1366950:CDS | 35.0% | |
| GTTTGAATTTGCGGTAAGTA+TGG | + | tig0018509:209548-209567 | None:intergenic | 35.0% | |
| ACTTACCGCAAATTCAAACA+TGG | - | tig0018509:209549-209568 | Msa1366950:intron | 35.0% | |
| TGTAACATATTGCTTTGTGC+AGG | - | tig0018509:209664-209683 | Msa1366950:intron | 35.0% | |
| GTAACATATTGCTTTGTGCA+GGG | - | tig0018509:209665-209684 | Msa1366950:intron | 35.0% | |
| ATGCAGTATGTCTTGCATTA+TGG | + | tig0018509:209755-209774 | None:intergenic | 35.0% | |
| AGCTCATGATTCTTTCTTTC+AGG | - | tig0018509:209836-209855 | Msa1366950:intron | 35.0% | |
| GCTAAACCAGAGAAAACTAT+AGG | - | tig0018509:210202-210221 | Msa1366950:intron | 35.0% | |
| ! | TCGTTTTGTGGAAAGGTTAT+TGG | + | tig0018509:210314-210333 | None:intergenic | 35.0% |
| GAAGATAGTCCAATAGTTAG+AGG | - | tig0018509:210508-210527 | Msa1366950:intron | 35.0% | |
| AGTCCAATAGTTAGAGGTAA+AGG | - | tig0018509:210514-210533 | Msa1366950:intron | 35.0% | |
| GTCCAATAGTTAGAGGTAAA+GGG | - | tig0018509:210515-210534 | Msa1366950:intron | 35.0% | |
| TTCCCTTTACCTCTAACTAT+TGG | + | tig0018509:210520-210539 | None:intergenic | 35.0% | |
| ! | CAACAAAGTCTTTTCTCATC+AGG | + | tig0018509:210628-210647 | None:intergenic | 35.0% |
| TAGTATGAATGCTTAGTGGA+AGG | - | tig0018509:210753-210772 | Msa1366950:intron | 35.0% | |
| TTGAAAAACTCGAATGACGT+CGG | + | tig0018509:210843-210862 | None:intergenic | 35.0% | |
| !!! | GTCATTCGAGTTTTTCAAGA+AGG | - | tig0018509:210845-210864 | Msa1366950:intron | 35.0% |
| CAAAAAACCTTCTCAAAAGG+AGG | - | tig0018509:210905-210924 | Msa1366950:intron | 35.0% | |
| ! | GGTATAGAGCAATTTTGCAA+TGG | + | tig0018509:211190-211209 | None:intergenic | 35.0% |
| TTGCAAAATTGCTCTATACC+AGG | - | tig0018509:211190-211209 | Msa1366950:intron | 35.0% | |
| TGCAAAATTGCTCTATACCA+GGG | - | tig0018509:211191-211210 | Msa1366950:intron | 35.0% | |
| !!! | TGATCATCTTTTTTCAACCC+TGG | + | tig0018509:211211-211230 | None:intergenic | 35.0% |
| AGAAAATAGAATCATGCTGG+AGG | - | tig0018509:211242-211261 | Msa1366950:CDS | 35.0% | |
| TATGTAAGTGTCCCTAACAT+AGG | - | tig0018509:211288-211307 | Msa1366950:intron | 35.0% | |
| TGAATACCAAGCTTTGCAAA+TGG | - | tig0018509:211479-211498 | Msa1366950:CDS | 35.0% | |
| ! | CGAGAAATGGGTTTCCAAAA+CGG | + | tig0018509:208387-208406 | None:intergenic | 40.0% |
| GATTCACCTTTCTTCGCTAT+CGG | - | tig0018509:208420-208439 | Msa1366950:three_prime_UTR | 40.0% | |
| ACGAGAACTTCTTGTCAAAC+AGG | - | tig0018509:208452-208471 | Msa1366950:three_prime_UTR | 40.0% | |
| ACAAGAGAAGGAACAGTTTG+AGG | - | tig0018509:208618-208637 | Msa1366950:three_prime_UTR | 40.0% | |
| GTTTGAGGACTTGATACAAG+AGG | - | tig0018509:208633-208652 | Msa1366950:three_prime_UTR | 40.0% | |
| TAGACGAACACAATAAGGCT+CGG | + | tig0018509:208806-208825 | None:intergenic | 40.0% | |
| ATCCTGGATGGAACAACTAT+TGG | - | tig0018509:208924-208943 | Msa1366950:CDS | 40.0% | |
| AACCAATAGTTGTTCCATCC+AGG | + | tig0018509:208929-208948 | None:intergenic | 40.0% | |
| CTAGTAATATGGAATTCCGC+TGG | + | tig0018509:208968-208987 | None:intergenic | 40.0% | |
| TGAGGCCATGTTTGAATTTG+CGG | + | tig0018509:209557-209576 | None:intergenic | 40.0% | |
| ! | GTTTGGCCTATAGTTTTCTC+TGG | + | tig0018509:210211-210230 | None:intergenic | 40.0% |
| TGTTGGAATGTCATGCGTTT+GGG | + | tig0018509:210341-210360 | None:intergenic | 40.0% | |
| TTGTTGGAATGTCATGCGTT+TGG | + | tig0018509:210342-210361 | None:intergenic | 40.0% | |
| CAGAGATAACATGAGGTTGT+TGG | + | tig0018509:210358-210377 | None:intergenic | 40.0% | |
| GGGAAACCAGAGAAAGTTAT+AGG | - | tig0018509:210535-210554 | Msa1366950:intron | 40.0% | |
| TGAAAAACTCGAATGACGTC+GGG | + | tig0018509:210842-210861 | None:intergenic | 40.0% | |
| !! | GAAGTATCCTCCTTTTGAGA+AGG | + | tig0018509:210915-210934 | None:intergenic | 40.0% |
| TCTCAAAAGGAGGATACTTC+AGG | - | tig0018509:210915-210934 | Msa1366950:intron | 40.0% | |
| ! | TACTTCAGGAATGATGGAAG+TGG | - | tig0018509:210929-210948 | Msa1366950:intron | 40.0% |
| ATCTAGACACTGCTGAAACA+AGG | + | tig0018509:210974-210993 | None:intergenic | 40.0% | |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | tig0018509:211040-211059 | None:intergenic | 40.0% |
| ! | AGAGCAATTTTGCAATGGGA+CGG | + | tig0018509:211185-211204 | None:intergenic | 40.0% |
| TGGGCACAAAACCTATGTTA+GGG | + | tig0018509:211302-211321 | None:intergenic | 40.0% | |
| ATGGGCACAAAACCTATGTT+AGG | + | tig0018509:211303-211322 | None:intergenic | 40.0% | |
| CGAAGAAAGGTGAATCGTGT+TGG | + | tig0018509:208416-208435 | None:intergenic | 45.0% | |
| AGGTTACCGATAGCGAAGAA+AGG | + | tig0018509:208429-208448 | None:intergenic | 45.0% | |
| TGACAAGAAGTTCTCGTTCG+AGG | + | tig0018509:208449-208468 | None:intergenic | 45.0% | |
| GGCTTATTCGACCTCAATCT+CGG | - | tig0018509:208751-208770 | Msa1366950:exon | 45.0% | |
| CAGTTAAGGACGAATCGATC+AGG | - | tig0018509:208886-208905 | Msa1366950:CDS | 45.0% | |
| GACGAATCGATCAGGAGAAT+CGG | - | tig0018509:208894-208913 | Msa1366950:CDS | 45.0% | |
| GAGAATCGGAATTCGAATCC+TGG | - | tig0018509:208908-208927 | Msa1366950:CDS | 45.0% | |
| ATCGGAATTCGAATCCTGGA+TGG | - | tig0018509:208912-208931 | Msa1366950:CDS | 45.0% | |
| TAATATGGAATTCCGCTGGG+AGG | + | tig0018509:208964-208983 | None:intergenic | 45.0% | |
| ATAAGGCGTGCTAATTTGGG+TGG | - | tig0018509:209048-209067 | Msa1366950:CDS | 45.0% | |
| TAAGGCGTGCTAATTTGGGT+GGG | - | tig0018509:209049-209068 | Msa1366950:CDS | 45.0% | |
| ! | GAAACGAATCTGAGACCTTG+AGG | + | tig0018509:209116-209135 | None:intergenic | 45.0% |
| AAGTCTTCTGTCCCATTGCT+GGG | - | tig0018509:209688-209707 | Msa1366950:intron | 45.0% | |
| ! | AGCACGTTTGGCTTCAATTG+AGG | - | tig0018509:209716-209735 | Msa1366950:intron | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | tig0018509:209778-209797 | None:intergenic | 45.0% |
| ATGCTGAGCAAACGTGATGT+GGG | + | tig0018509:209804-209823 | None:intergenic | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | tig0018509:209805-209824 | None:intergenic | 45.0% | |
| TTTCAGGCAAAAGTTGCACG+TGG | - | tig0018509:209852-209871 | Msa1366950:intron | 45.0% | |
| ! | AAGTCTTTTCTCATCAGGCG+AGG | + | tig0018509:210623-210642 | None:intergenic | 45.0% |
| GAATGCTTAGTGGAAGGTTG+CGG | - | tig0018509:210759-210778 | Msa1366950:intron | 45.0% | |
| CTCTGCCTTCAAAGAAACAC+AGG | - | tig0018509:210868-210887 | Msa1366950:intron | 45.0% | |
| GGAGGATACTTCAGGAATGA+TGG | - | tig0018509:210923-210942 | Msa1366950:intron | 45.0% | |
| GGAAGTGGAAAATGCAGCTA+TGG | - | tig0018509:210944-210963 | Msa1366950:intron | 45.0% | |
| AAAGCTGATAGAGGAAGGAG+TGG | + | tig0018509:211012-211031 | None:intergenic | 45.0% | |
| ACTCCTTCCTCTATCAGCTT+TGG | - | tig0018509:211011-211030 | Msa1366950:intron | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | tig0018509:211048-211067 | None:intergenic | 45.0% | |
| !! | TCAAAATAATTATAATAATA+AGG | - | tig0018509:209173-209192 | Msa1366950:intron | 5.0% |
| TGTCTCTGCAACCGAGATTG+AGG | + | tig0018509:208765-208784 | None:intergenic | 50.0% | |
| CGTGCTAATTTGGGTGGGTA+TGG | - | tig0018509:209054-209073 | Msa1366950:CDS | 50.0% | |
| GCTAATTTGGGTGGGTATGG+TGG | - | tig0018509:209057-209076 | Msa1366950:CDS | 50.0% | |
| ! | ATCTGAGACCTTGAGGAGGA+GGG | + | tig0018509:209109-209128 | None:intergenic | 50.0% |
| ! | AATCTGAGACCTTGAGGAGG+AGG | + | tig0018509:209110-209129 | None:intergenic | 50.0% |
| ! | ACGAATCTGAGACCTTGAGG+AGG | + | tig0018509:209113-209132 | None:intergenic | 50.0% |
| TTTCGCCCTTGTGCCAGTTT+GGG | - | tig0018509:209132-209151 | Msa1366950:intron | 50.0% | |
| GAAGTCTTCTGTCCCATTGC+TGG | - | tig0018509:209687-209706 | Msa1366950:intron | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | tig0018509:209803-209822 | None:intergenic | 50.0% | |
| AGTTGCACGTGGCTATGACA+TGG | - | tig0018509:209863-209882 | Msa1366950:intron | 50.0% | |
| ! | GGGCGTTTCGTTTTGTGGAA+AGG | + | tig0018509:210321-210340 | None:intergenic | 50.0% |
| ! | CGTTTGGGCGTTTCGTTTTG+TGG | + | tig0018509:210326-210345 | None:intergenic | 50.0% |
| CGACCAAAGCTGATAGAGGA+AGG | + | tig0018509:211017-211036 | None:intergenic | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | tig0018509:211029-211048 | Msa1366950:intron | 50.0% | |
| CTGGCACCATTTGCAAAGCT+TGG | + | tig0018509:211488-211507 | None:intergenic | 50.0% | |
| ! | TTGGGTGGGTATGGTGGTGT+TGG | - | tig0018509:209063-209082 | Msa1366950:CDS | 55.0% |
| ! | AGGAGGAGGGGCATATTCCA+AGG | + | tig0018509:209096-209115 | None:intergenic | 55.0% |
| GAATATGCCCCTCCTCCTCA+AGG | - | tig0018509:209098-209117 | Msa1366950:CDS | 55.0% | |
| ! | TCTGAGACCTTGAGGAGGAG+GGG | + | tig0018509:209108-209127 | None:intergenic | 55.0% |
| GTTTCGCCCTTGTGCCAGTT+TGG | - | tig0018509:209131-209150 | Msa1366950:intron | 55.0% | |
| CTAAGCTAGCCCTCCCAAAC+TGG | + | tig0018509:209148-209167 | None:intergenic | 55.0% | |
| TTCTGTCCCATTGCTGGGTG+TGG | - | tig0018509:209693-209712 | Msa1366950:intron | 55.0% | |
| ACGGCGACCAAAGCTGATAG+AGG | + | tig0018509:211021-211040 | None:intergenic | 55.0% | |
| GCGTGGGAAGGGATCTAACT+CGG | - | tig0018509:211079-211098 | Msa1366950:intron | 55.0% | |
| CGTGGGAAGGGATCTAACTC+GGG | - | tig0018509:211080-211099 | Msa1366950:intron | 55.0% | |
| !! | GTGGTGTTGGCTCGAGACCT+TGG | - | tig0018509:209076-209095 | Msa1366950:CDS | 60.0% |
| GCCCTTGTGCCAGTTTGGGA+GGG | - | tig0018509:209136-209155 | Msa1366950:intron | 60.0% | |
| GCCCTCCCAAACTGGCACAA+GGG | + | tig0018509:209140-209159 | None:intergenic | 60.0% | |
| AGCCCTCCCAAACTGGCACA+AGG | + | tig0018509:209141-209160 | None:intergenic | 60.0% | |
| CGTGCTCCACACCCAGCAAT+GGG | + | tig0018509:209702-209721 | None:intergenic | 60.0% | |
| ACGTGCTCCACACCCAGCAA+TGG | + | tig0018509:209703-209722 | None:intergenic | 60.0% | |
| TGCTGGGTGTGGAGCACGTT+TGG | - | tig0018509:209704-209723 | Msa1366950:intron | 60.0% | |
| TCCCTCGAGCTGTTCAGCGT+GGG | - | tig0018509:211063-211082 | Msa1366950:intron | 60.0% | |
| TCCCACGCTGAACAGCTCGA+GGG | + | tig0018509:211067-211086 | None:intergenic | 60.0% | |
| TTCCCACGCTGAACAGCTCG+AGG | + | tig0018509:211068-211087 | None:intergenic | 60.0% | |
| TCGAGCTGTTCAGCGTGGGA+AGG | - | tig0018509:211067-211086 | Msa1366950:intron | 60.0% | |
| CGAGCTGTTCAGCGTGGGAA+GGG | - | tig0018509:211068-211087 | Msa1366950:intron | 60.0% | |
| CGCCCTTGTGCCAGTTTGGG+AGG | - | tig0018509:209135-209154 | Msa1366950:intron | 65.0% | |
| GTCCCTCGAGCTGTTCAGCG+TGG | - | tig0018509:211062-211081 | Msa1366950:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018509 | gene | 208348 | 211540 | 208348 | ID=Msa1366950;Name=Msa1366950 |
| tig0018509 | mRNA | 208348 | 211540 | 208348 | ID=Msa1366950-mRNA-1;Parent=Msa1366950;Name=Msa1366950-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0.25|0.25|1|1|4|416|253 |
| tig0018509 | exon | 208348 | 209132 | 208348 | ID=Msa1366950-mRNA-1:exon:15283;Parent=Msa1366950-mRNA-1 |
| tig0018509 | exon | 210004 | 210202 | 210004 | ID=Msa1366950-mRNA-1:exon:15282;Parent=Msa1366950-mRNA-1 |
| tig0018509 | exon | 211226 | 211293 | 211226 | ID=Msa1366950-mRNA-1:exon:15281;Parent=Msa1366950-mRNA-1 |
| tig0018509 | exon | 211415 | 211540 | 211415 | ID=Msa1366950-mRNA-1:exon:15280;Parent=Msa1366950-mRNA-1 |
| tig0018509 | CDS | 211415 | 211540 | 211415 | ID=Msa1366950-mRNA-1:cds;Parent=Msa1366950-mRNA-1 |
| tig0018509 | CDS | 211226 | 211293 | 211226 | ID=Msa1366950-mRNA-1:cds;Parent=Msa1366950-mRNA-1 |
| tig0018509 | CDS | 210004 | 210202 | 210004 | ID=Msa1366950-mRNA-1:cds;Parent=Msa1366950-mRNA-1 |
| tig0018509 | CDS | 208764 | 209132 | 208764 | ID=Msa1366950-mRNA-1:cds;Parent=Msa1366950-mRNA-1 |
| tig0018509 | three_prime_UTR | 208348 | 208763 | 208348 | ID=Msa1366950-mRNA-1:three_prime_utr;Parent=Msa1366950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
