AlfalfaGEDB | Msa1388140

M. sativa cultivar zhongmu-4 / Msa1388140

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388140	RHN44987.1	94.862	253	13	0	1	253	1	253	5.52e-179	502

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388140	sp\|Q7ZZ00\|ZN511_DANRE	33.766	231	131	5	13	230	49	270	1.29e-34	128

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388140	A0A396H268	94.862	253	13	0	1	253	1	253	2.64e-179	502

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1388140	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1366950	Msa1388140	0.984108	1.306487e-159	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388140	MtrunA17_Chr7g0225371	94.862	253	13	0	1	253	1	253	0.0	502
Msa1388140	MtrunA17_Chr7g0225251	95.213	188	9	0	66	253	5	192	7.40e-134	375
Msa1388140	MtrunA17_Chr7g0225341	76.577	111	24	2	136	245	8	117	2.99e-51	163

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388140	AT5G14140.1	61.943	247	85	4	11	249	14	259	4.81e-107	310

Showing 1 to 1 of 1 entries

Previous1Next

Find 76 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGAATCATGAGCTT+CGG	0.485050	tig0021036:+67454	Msa1388140:intergenic
AAAGCTGATAGAGGAAGGAG+TGG	0.665134	tig0021036:+66277	Msa1388140:intergenic
AAGTCTTCTGTCCCATTGCT+GGG	0.459510	tig0021036:-67598	Msa1388140:CDS
AATAAATGTCAACAAGAAGC+TGG	0.567276	tig0021036:+65782	Msa1388140:intergenic
AATTATATCTGCTAATGATG+TGG	0.622983	tig0021036:-65960	Msa1388140:three_prime_UTR
AATTCAAAAGCTACAAAAGT+AGG	0.497972	tig0021036:-66499	Msa1388140:CDS
ACAAGAGAAGGAACAGTTTG+AGG	0.507962	tig0021036:-68667	Msa1388140:CDS
ACGAGAACTTCTTGTCAAAC+AGG	0.437900	tig0021036:-68833	Msa1388140:intron
ACGGCGACCAAAGCTGATAG+AGG	0.559633	tig0021036:+66268	Msa1388140:intergenic
ACGTGCTCCACACCCAGCAA+TGG	0.559174	tig0021036:+67586	Msa1388140:intergenic

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAAACGGAAAATTTGAATC+CGG	+	tig0021036:65792-65811	Msa1388140:intergenic	30.0%
TGTTGGAATTTACGAGAAAT+GGG	+	tig0021036:65819-65838	Msa1388140:intergenic	30.0%
TGGTTAATAGACTTCAGTTA+AGG	-	tig0021036:66291-66310	Msa1388140:CDS	30.0%
CACAATCTTCAATAAACATG+AGG	+	tig0021036:66994-67013	Msa1388140:intergenic	30.0%
AAAGCCAAAGATTAACTTCT+AGG	+	tig0021036:67023-67042	Msa1388140:intergenic	30.0%
AAAGAAAGAATCATGAGCTT+CGG	+	tig0021036:67254-67273	Msa1388140:intergenic	30.0%
AAAGATAGTCCATTAGTTAG+TGG	-	tig0021036:67594-67613	Msa1388140:CDS	30.0%
TATAGGCCAAACAATTAAGA+AGG	-	tig0021036:67638-67657	Msa1388140:intron	30.0%
CCAAATCCTTCTTAATTGTT+TGG	+	tig0021036:67647-67666	Msa1388140:intergenic	30.0%
CCAAACAATTAAGAAGGATT+TGG	-	tig0021036:67644-67663	Msa1388140:intron	30.0%

Showing 1 to 10 of 191 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
tig0021036	gene	65768	68959	65768	ID=Msa1388140;Name=Msa1388140
tig0021036	mRNA	65768	68959	65768	ID=Msa1388140-mRNA-1;Parent=Msa1388140;Name=Msa1388140-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0\|0.25\|0.25\|1\|1\|4\|416\|253
tig0021036	exon	65768	66552	65768	ID=Msa1388140-mRNA-1:exon:10995;Parent=Msa1388140-mRNA-1
tig0021036	exon	67424	67622	67424	ID=Msa1388140-mRNA-1:exon:10994;Parent=Msa1388140-mRNA-1
tig0021036	exon	68645	68712	68645	ID=Msa1388140-mRNA-1:exon:10993;Parent=Msa1388140-mRNA-1
tig0021036	exon	68834	68959	68834	ID=Msa1388140-mRNA-1:exon:10992;Parent=Msa1388140-mRNA-1
tig0021036	CDS	68834	68959	68834	ID=Msa1388140-mRNA-1:cds;Parent=Msa1388140-mRNA-1
tig0021036	CDS	68645	68712	68645	ID=Msa1388140-mRNA-1:cds;Parent=Msa1388140-mRNA-1
tig0021036	CDS	67424	67622	67424	ID=Msa1388140-mRNA-1:cds;Parent=Msa1388140-mRNA-1
tig0021036	CDS	66184	66552	66184	ID=Msa1388140-mRNA-1:cds;Parent=Msa1388140-mRNA-1
tig0021036	three_prime_UTR	65768	66183	65768	ID=Msa1388140-mRNA-1:three_prime_utr;Parent=Msa1388140-mRNA-1

Gene Sequence

>Msa1388140

ATGGAAGTGGAAAATCAAAATCCGGATTCAAATTTTCCGTTTTGGAAACCCATTTCTCGTAAATTCCAACACGATTCACCTTTCTTCGCTATCGGTAACCTCGAACGAGAACTTCTTGTCAAACAGGTTGCGTTGGAATTTGAATTAACACAAGAGAAGGAACAGTTTGAGGACTTGATACAAGAGGATGAAAGGGAAGTCTTCTGTCCCATTGCTGGGTGTGGAGCACGTTTGGCTTCAATTGAGGATTTTGAAAATCACCATAATGCAAGACATACTGCATCCTGTTCTGTGTGTTCTAGAGTCTACCCCACATCACGTTTGCTCAGCATACATGTATCCGAAGCTCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGACATGTATGAATGCTTAGTGGAAGGTTGCGGTTTGAAATTCAAAAGCTACAAAAGTAGGCAGCAGCATCTACTCGACAAGCATAAATTCCCGACGTCATTCGAGTTTTTCAAGAAGGCTCTGCCTTCAAAGAAACACAGGATAAAGTCTCAGAACAAAAAACCTTCTCAAAAGGAGGATACTTCAGGAATGATGGAAGTGGAAAATGCAGCTATGGATGACCTTGTTTCAGCAGTGTCTAGATTAAATACTTCGGACACCACTCCTTCCTCTATCAGCTTTGGTCGCCGTAACACCAAAGGCATGTCATTTGTCCCTCGAGCTGTTCAGCGTGGGAAGGGATCTAACTCGGGCTCATCCATTACTAAGAAATAA

Protein sequence

>Msa1388140

MEVENQNPDSNFPFWKPISRKFQHDSPFFAIGNLERELLVKQVALEFELTQEKEQFEDLIQEDEREVFCPIAGCGARLASIEDFENHHNARHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRQQHLLDKHKFPTSFEFFKKALPSKKHRIKSQNKKPSQKEDTSGMMEVENAAMDDLVSAVSRLNTSDTTPSSISFGRRNTKGMSFVPRAVQRGKGSNSGSSITKK*