Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388140 | RHN44987.1 | 94.862 | 253 | 13 | 0 | 1 | 253 | 1 | 253 | 5.52e-179 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388140 | sp|Q7ZZ00|ZN511_DANRE | 33.766 | 231 | 131 | 5 | 13 | 230 | 49 | 270 | 1.29e-34 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388140 | A0A396H268 | 94.862 | 253 | 13 | 0 | 1 | 253 | 1 | 253 | 2.64e-179 | 502 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1388140 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1366950 | Msa1388140 | 0.984108 | 1.306487e-159 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388140 | MtrunA17_Chr7g0225371 | 94.862 | 253 | 13 | 0 | 1 | 253 | 1 | 253 | 0.0 | 502 |
| Msa1388140 | MtrunA17_Chr7g0225251 | 95.213 | 188 | 9 | 0 | 66 | 253 | 5 | 192 | 7.40e-134 | 375 |
| Msa1388140 | MtrunA17_Chr7g0225341 | 76.577 | 111 | 24 | 2 | 136 | 245 | 8 | 117 | 2.99e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388140 | AT5G14140.1 | 61.943 | 247 | 85 | 4 | 11 | 249 | 14 | 259 | 4.81e-107 | 310 |
Find 76 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATGATTCTTTCTTTC+AGG | 0.183557 | tig0021036:-67450 | Msa1388140:CDS |
| GAAGTCTTCTGTCCCATTGC+TGG | 0.271752 | tig0021036:-67599 | Msa1388140:CDS |
| GTGTTGGAATTTACGAGAAA+TGG | 0.316280 | tig0021036:+68888 | Msa1388140:intergenic |
| TGCTGGGTGTGGAGCACGTT+TGG | 0.380745 | tig0021036:-67582 | Msa1388140:CDS |
| ATGGGCACAAAACCTATGTT+AGG | 0.380856 | tig0021036:+65986 | Msa1388140:intergenic |
| TTTATCCTGTGTTTCTTTGA+AGG | 0.386367 | tig0021036:+66413 | Msa1388140:intergenic |
| TTCTGTCCCATTGCTGGGTG+TGG | 0.397837 | tig0021036:-67593 | Msa1388140:CDS |
| CAAAACGGAAAATTTGAATC+CGG | 0.397939 | tig0021036:+68916 | Msa1388140:intergenic |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | tig0021036:+66249 | Msa1388140:intergenic |
| GTAAGCTTATTTCTTAGTAA+TGG | 0.406814 | tig0021036:+66178 | Msa1388140:intergenic |
| TCTCAAAAGGAGGATACTTC+AGG | 0.418130 | tig0021036:-66371 | Msa1388140:CDS |
| CGAGAAATGGGTTTCCAAAA+CGG | 0.423576 | tig0021036:+68901 | Msa1388140:intergenic |
| ATGCAGTATGTCTTGCATTA+TGG | 0.426087 | tig0021036:+67534 | Msa1388140:intergenic |
| ACGAGAACTTCTTGTCAAAC+AGG | 0.437900 | tig0021036:-68833 | Msa1388140:intron |
| TGTTGGAATTTACGAGAAAT+GGG | 0.440882 | tig0021036:+68889 | Msa1388140:intergenic |
| ACTCCTTCCTCTATCAGCTT+TGG | 0.443914 | tig0021036:-66275 | Msa1388140:CDS |
| ATTGCTTATTGATCGATCTT+CGG | 0.450297 | tig0021036:-66130 | Msa1388140:three_prime_UTR |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | tig0021036:+67511 | Msa1388140:intergenic |
| AAGTCTTCTGTCCCATTGCT+GGG | 0.459510 | tig0021036:-67598 | Msa1388140:CDS |
| TGTTTAGCTTATATTCACTT+TGG | 0.465598 | tig0021036:-65905 | Msa1388140:three_prime_UTR |
| AGCACGTTTGGCTTCAATTG+AGG | 0.468334 | tig0021036:-67570 | Msa1388140:CDS |
| TATGTAAGTGTCCCTAACAT+AGG | 0.476678 | tig0021036:-65998 | Msa1388140:three_prime_UTR |
| GGAGGATACTTCAGGAATGA+TGG | 0.477569 | tig0021036:-66363 | Msa1388140:CDS |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | tig0021036:+66241 | Msa1388140:intergenic |
| GGAAGTGGAAAATCAAAATC+CGG | 0.482912 | tig0021036:-68935 | Msa1388140:CDS |
| CTGGCACCATTTGCAAAGCT+TGG | 0.484495 | tig0021036:+65801 | Msa1388140:intergenic |
| AAAGAAAGAATCATGAGCTT+CGG | 0.485050 | tig0021036:+67454 | Msa1388140:intergenic |
| ATTAGCAGATATAATTTGCA+TGG | 0.496292 | tig0021036:+65967 | Msa1388140:intergenic |
| TGACAAGAAGTTCTCGTTCG+AGG | 0.497533 | tig0021036:+68839 | Msa1388140:intergenic |
| AATTCAAAAGCTACAAAAGT+AGG | 0.497972 | tig0021036:-66499 | Msa1388140:CDS |
| CGTGCTCCACACCCAGCAAT+GGG | 0.505775 | tig0021036:+67587 | Msa1388140:intergenic |
| ACAAGAGAAGGAACAGTTTG+AGG | 0.507962 | tig0021036:-68667 | Msa1388140:CDS |
| ATCAGAAAATAGAATCATGC+TGG | 0.508550 | tig0021036:-66047 | Msa1388140:three_prime_UTR |
| CGAGCTGTTCAGCGTGGGAA+GGG | 0.513540 | tig0021036:-66218 | Msa1388140:CDS |
| TTGCAAAATTGCTCTATACC+AGG | 0.513899 | tig0021036:-66096 | Msa1388140:three_prime_UTR |
| TCGAGCTGTTCAGCGTGGGA+AGG | 0.516848 | tig0021036:-66219 | Msa1388140:CDS |
| GATTCACCTTTCTTCGCTAT+CGG | 0.518189 | tig0021036:-68865 | Msa1388140:CDS |
| TTAATTTGAAAAGGTTGCGT+TGG | 0.527267 | tig0021036:-68703 | Msa1388140:intron |
| GAATGCTTAGTGGAAGGTTG+CGG | 0.528977 | tig0021036:-66527 | Msa1388140:CDS |
| ATATTAGTATGAATGCTTAG+TGG | 0.534106 | tig0021036:-66537 | Msa1388140:intron |
| CGAAGAAAGGTGAATCGTGT+TGG | 0.535030 | tig0021036:+68872 | Msa1388140:intergenic |
| TTCCCACGCTGAACAGCTCG+AGG | 0.542891 | tig0021036:+66221 | Msa1388140:intergenic |
| GCGTGGGAAGGGATCTAACT+CGG | 0.545220 | tig0021036:-66207 | Msa1388140:CDS |
| TGAATACCAAGCTTTGCAAA+TGG | 0.550337 | tig0021036:-65807 | Msa1388140:three_prime_UTR |
| TCCCTCGAGCTGTTCAGCGT+GGG | 0.551783 | tig0021036:-66223 | Msa1388140:CDS |
| ATTTGAATTAACACAAGAGA+AGG | 0.553168 | tig0021036:-68679 | Msa1388140:CDS |
| CTCTGCCTTCAAAGAAACAC+AGG | 0.556458 | tig0021036:-66418 | Msa1388140:CDS |
| GGTTGAACCAACGATGGAAG+TGG | 0.559043 | tig0021036:-68950 | None:intergenic |
| ACGTGCTCCACACCCAGCAA+TGG | 0.559174 | tig0021036:+67586 | Msa1388140:intergenic |
| ACGGCGACCAAAGCTGATAG+AGG | 0.559633 | tig0021036:+66268 | Msa1388140:intergenic |
| TACTTCAGGAATGATGGAAG+TGG | 0.560728 | tig0021036:-66357 | Msa1388140:CDS |
| GGAAGTGGAAAATGCAGCTA+TGG | 0.560741 | tig0021036:-66342 | Msa1388140:CDS |
| TGGGCACAAAACCTATGTTA+GGG | 0.565786 | tig0021036:+65987 | Msa1388140:intergenic |
| TAGTATGAATGCTTAGTGGA+AGG | 0.567041 | tig0021036:-66533 | Msa1388140:CDS |
| AATAAATGTCAACAAGAAGC+TGG | 0.567276 | tig0021036:+65782 | Msa1388140:intergenic |
| ACTTGATACAAGAGGATGAA+AGG | 0.567423 | tig0021036:-68644 | Msa1388140:intron |
| CGTGGGAAGGGATCTAACTC+GGG | 0.575940 | tig0021036:-66206 | Msa1388140:CDS |
| TTAGCAGATATAATTTGCAT+GGG | 0.576863 | tig0021036:+65968 | Msa1388140:intergenic |
| GTCCCTCGAGCTGTTCAGCG+TGG | 0.579249 | tig0021036:-66224 | Msa1388140:CDS |
| TGCAAAATTGCTCTATACCA+GGG | 0.579873 | tig0021036:-66095 | Msa1388140:three_prime_UTR |
| AGGTTACCGATAGCGAAGAA+AGG | 0.581308 | tig0021036:+68859 | Msa1388140:intergenic |
| ACTAAGAAATAAGCTTACAC+TGG | 0.594361 | tig0021036:-66173 | Msa1388140:exon |
| CGACCAAAGCTGATAGAGGA+AGG | 0.601809 | tig0021036:+66272 | Msa1388140:intergenic |
| AGTGTCTAGATTAAATACTT+CGG | 0.602650 | tig0021036:-66303 | Msa1388140:CDS |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | tig0021036:+67484 | Msa1388140:intergenic |
| ATCTAGACACTGCTGAAACA+AGG | 0.610308 | tig0021036:+66315 | Msa1388140:intergenic |
| GTTTGAGGACTTGATACAAG+AGG | 0.614127 | tig0021036:-68652 | Msa1388140:CDS |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | tig0021036:-66257 | Msa1388140:CDS |
| AATTATATCTGCTAATGATG+TGG | 0.622983 | tig0021036:-65960 | Msa1388140:three_prime_UTR |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | tig0021036:+67485 | Msa1388140:intergenic |
| TCCCACGCTGAACAGCTCGA+GGG | 0.633991 | tig0021036:+66222 | Msa1388140:intergenic |
| AGTTGCACGTGGCTATGACA+TGG | 0.642662 | tig0021036:-67423 | Msa1388140:intron |
| AGAAAATAGAATCATGCTGG+AGG | 0.643059 | tig0021036:-66044 | Msa1388140:three_prime_UTR |
| AAAGCTGATAGAGGAAGGAG+TGG | 0.665134 | tig0021036:+66277 | Msa1388140:intergenic |
| TTTCAGGCAAAAGTTGCACG+TGG | 0.671699 | tig0021036:-67434 | Msa1388140:CDS |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | tig0021036:+67486 | Msa1388130:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATTTATACTTATAAAA+TGG | - | tig0021036:67041-67060 | Msa1388140:intron | 10.0% |
| !! | TCATTAAATTAAATCATATT+TGG | + | tig0021036:67327-67346 | Msa1388140:intergenic | 10.0% |
| !! | AAATAAAATAGTAAACAAAA+AGG | + | tig0021036:67861-67880 | Msa1388140:intergenic | 10.0% |
| !!! | TATTCTAATACCTATTATTT+TGG | + | tig0021036:66450-66469 | Msa1388140:intergenic | 15.0% |
| !! | AAATAATAGGTATTAGAATA+AGG | - | tig0021036:66450-66469 | Msa1388140:CDS | 15.0% |
| !! | TATATCTATAATCATTTATG+TGG | - | tig0021036:66801-66820 | Msa1388140:intron | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | - | tig0021036:67329-67348 | Msa1388140:intron | 15.0% |
| !!! | GTAAGATTTTAAATTAAAGT+AGG | + | tig0021036:67426-67445 | Msa1388140:intergenic | 15.0% |
| !! | AAATTAAATAGAAGATAGAA+AGG | + | tig0021036:67528-67547 | Msa1388140:intergenic | 15.0% |
| !! | ATTTATATTCTCGATTAATG+TGG | - | tig0021036:66150-66169 | Msa1388140:three_prime_UTR | 20.0% |
| !!! | ATTCTAGTTCTCAAAATAAA+AGG | + | tig0021036:66413-66432 | Msa1388140:intergenic | 20.0% |
| !!! | ATTTTCAAGAACTATAAGAA+AGG | + | tig0021036:66773-66792 | Msa1388140:intergenic | 20.0% |
| !!! | TGTTGATAAAATATACACTT+TGG | + | tig0021036:66920-66939 | Msa1388140:intergenic | 20.0% |
| !! | AAACAACCAAATTGTAAAAA+TGG | + | tig0021036:67467-67486 | Msa1388140:intergenic | 20.0% |
| !!! | TGATTTTGAAATCAAAGATT+GGG | + | tig0021036:67708-67727 | Msa1388140:intergenic | 20.0% |
| !!! | ATGATTTTGAAATCAAAGAT+TGG | + | tig0021036:67709-67728 | Msa1388140:intergenic | 20.0% |
| !! | AGAAAGAAATTCATTAACAT+GGG | + | tig0021036:67833-67852 | Msa1388140:intergenic | 20.0% |
| !! | AAGAAAGAAATTCATTAACA+TGG | + | tig0021036:67834-67853 | Msa1388140:intergenic | 20.0% |
| !! | CATTATAGATAATTAACGAT+AGG | - | tig0021036:67983-68002 | Msa1388140:intron | 20.0% |
| !! | AAGCTAACATATTACTTATT+TGG | - | tig0021036:68075-68094 | Msa1388140:intron | 20.0% |
| !!! | ACATATGATTTTTCTCTATT+AGG | - | tig0021036:68102-68121 | Msa1388140:intron | 20.0% |
| !!! | ACTTGCGTTTTAATTTGAAA+AGG | - | tig0021036:65993-66012 | Msa1388140:three_prime_UTR | 25.0% |
| ! | ATTTGAATTAACACAAGAGA+AGG | - | tig0021036:66026-66045 | Msa1388140:three_prime_UTR | 25.0% |
| ! | TAAGAATATGAAGAAGAAGA+AGG | + | tig0021036:66113-66132 | Msa1388140:intergenic | 25.0% |
| ! | ATAAAAGGACTCTAGTAATA+TGG | + | tig0021036:66398-66417 | Msa1388140:intergenic | 25.0% |
| ! | AGAGTTAAGACCAAAATAAT+AGG | - | tig0021036:66437-66456 | Msa1388140:CDS | 25.0% |
| ! | GTTTGAGTAAGAACTAATAA+TGG | + | tig0021036:66635-66654 | Msa1388140:intergenic | 25.0% |
| !! | TTTTCCTAGAAGTTAATCTT+TGG | - | tig0021036:67016-67035 | Msa1388140:intron | 25.0% |
| ! | AAGCAATATGTTACAAAATG+AGG | + | tig0021036:67078-67097 | Msa1388140:intergenic | 25.0% |
| !!! | GAAAGACCATTTTTACAATT+TGG | - | tig0021036:67458-67477 | Msa1388140:CDS | 25.0% |
| !! | TGGGTTGTTATTAGTTATTA+CGG | + | tig0021036:67814-67833 | Msa1388140:intergenic | 25.0% |
| !!! | TCATATTTGAGTTTGTTAGA+AGG | - | tig0021036:67893-67912 | Msa1388140:intron | 25.0% |
| ! | AAATGACAATCTCTATAACA+TGG | - | tig0021036:68129-68148 | Msa1388140:intron | 25.0% |
| ! | ATATTAGTATGAATGCTTAG+TGG | - | tig0021036:68168-68187 | Msa1388140:intron | 25.0% |
| ! | AATTCAAAAGCTACAAAAGT+AGG | - | tig0021036:68206-68225 | Msa1388140:intron | 25.0% |
| ! | AGTGTCTAGATTAAATACTT+CGG | - | tig0021036:68402-68421 | Msa1388140:intron | 25.0% |
| !! | GTAAGCTTATTTCTTAGTAA+TGG | + | tig0021036:68530-68549 | Msa1388140:intergenic | 25.0% |
| !! | TTAGCAGATATAATTTGCAT+GGG | + | tig0021036:68740-68759 | Msa1388140:intergenic | 25.0% |
| !! | ATTAGCAGATATAATTTGCA+TGG | + | tig0021036:68741-68760 | Msa1388140:intergenic | 25.0% |
| ! | AATTATATCTGCTAATGATG+TGG | - | tig0021036:68745-68764 | Msa1388140:intron | 25.0% |
| !! | TGTTTAGCTTATATTCACTT+TGG | - | tig0021036:68800-68819 | Msa1388140:intron | 25.0% |
| CAAAACGGAAAATTTGAATC+CGG | + | tig0021036:65792-65811 | Msa1388140:intergenic | 30.0% | |
| TGTTGGAATTTACGAGAAAT+GGG | + | tig0021036:65819-65838 | Msa1388140:intergenic | 30.0% | |
| ! | TTAATTTGAAAAGGTTGCGT+TGG | - | tig0021036:66002-66021 | Msa1388140:three_prime_UTR | 30.0% |
| TGGTTAATAGACTTCAGTTA+AGG | - | tig0021036:66291-66310 | Msa1388140:CDS | 30.0% | |
| ! | TCTTTGAGAACAGTTAATGA+TGG | - | tig0021036:66693-66712 | Msa1388140:intron | 30.0% |
| !! | GTGGAAAAACACATTTTGAT+TGG | - | tig0021036:66820-66839 | Msa1388140:intron | 30.0% |
| CACAATCTTCAATAAACATG+AGG | + | tig0021036:66994-67013 | Msa1388140:intergenic | 30.0% | |
| AAAGCCAAAGATTAACTTCT+AGG | + | tig0021036:67023-67042 | Msa1388140:intergenic | 30.0% | |
| AAAGAAAGAATCATGAGCTT+CGG | + | tig0021036:67254-67273 | Msa1388140:intergenic | 30.0% | |
| !! | TCATAGTTGAGTTTGTTAGA+AGG | - | tig0021036:67560-67579 | Msa1388140:CDS | 30.0% |
| AAAGATAGTCCATTAGTTAG+TGG | - | tig0021036:67594-67613 | Msa1388140:CDS | 30.0% | |
| !! | TTAGCTTTACCACTAACTAA+TGG | + | tig0021036:67606-67625 | Msa1388140:intergenic | 30.0% |
| TATAGGCCAAACAATTAAGA+AGG | - | tig0021036:67638-67657 | Msa1388140:intron | 30.0% | |
| CCAAATCCTTCTTAATTGTT+TGG | + | tig0021036:67647-67666 | Msa1388140:intergenic | 30.0% | |
| CCAAACAATTAAGAAGGATT+TGG | - | tig0021036:67644-67663 | Msa1388140:intron | 30.0% | |
| TATTACACAGAGATAACATG+AGG | + | tig0021036:67784-67803 | Msa1388140:intergenic | 30.0% | |
| TTGTTAGAAGGAAGATCAAA+TGG | - | tig0021036:67905-67924 | Msa1388140:intron | 30.0% | |
| ATTTGACCTATAACTTTCTC+TGG | + | tig0021036:67963-67982 | Msa1388140:intergenic | 30.0% | |
| TTTATCCTGTGTTTCTTTGA+AGG | + | tig0021036:68295-68314 | Msa1388140:intergenic | 30.0% | |
| GAACAAAAAACCTTCTCAAA+AGG | - | tig0021036:68321-68340 | Msa1388140:intron | 30.0% | |
| ACTAAGAAATAAGCTTACAC+TGG | - | tig0021036:68532-68551 | Msa1388140:intron | 30.0% | |
| ATTGCTTATTGATCGATCTT+CGG | - | tig0021036:68575-68594 | Msa1388140:intron | 30.0% | |
| ! | GTATAGAGCAATTTTGCAAT+GGG | + | tig0021036:68608-68627 | Msa1388140:intergenic | 30.0% |
| ATCAGAAAATAGAATCATGC+TGG | - | tig0021036:68658-68677 | Msa1388140:CDS | 30.0% | |
| AATAAATGTCAACAAGAAGC+TGG | + | tig0021036:68926-68945 | Msa1388140:intergenic | 30.0% | |
| GGAAGTGGAAAATCAAAATC+CGG | - | tig0021036:65770-65789 | Msa1388140:three_prime_UTR | 35.0% | |
| ! | CGGATTCAAATTTTCCGTTT+TGG | - | tig0021036:65790-65809 | Msa1388140:three_prime_UTR | 35.0% |
| GTGTTGGAATTTACGAGAAA+TGG | + | tig0021036:65820-65839 | Msa1388140:intergenic | 35.0% | |
| ACTTGATACAAGAGGATGAA+AGG | - | tig0021036:66061-66080 | Msa1388140:three_prime_UTR | 35.0% | |
| CAATAAGGCTCGGAATATTA+AGG | + | tig0021036:66216-66235 | Msa1388140:intergenic | 35.0% | |
| CAAGTTAGACGAACACAATA+AGG | + | tig0021036:66231-66250 | Msa1388140:intergenic | 35.0% | |
| ACTATATGATTGTGCTCTAG+TGG | - | tig0021036:66271-66290 | Msa1388140:CDS | 35.0% | |
| AAACTTTATATACCTCCCAG+CGG | - | tig0021036:66368-66387 | Msa1388140:CDS | 35.0% | |
| TAGTAATATGGAATTCCGCT+GGG | + | tig0021036:66386-66405 | Msa1388140:intergenic | 35.0% | |
| TAGAATAAGGCGTGCTAATT+TGG | - | tig0021036:66463-66482 | Msa1388140:CDS | 35.0% | |
| AGAATAAGGCGTGCTAATTT+GGG | - | tig0021036:66464-66483 | Msa1388140:CDS | 35.0% | |
| GTTTGAATTTGCGGTAAGTA+TGG | + | tig0021036:66967-66986 | Msa1388140:intergenic | 35.0% | |
| ACTTACCGCAAATTCAAACA+TGG | - | tig0021036:66968-66987 | Msa1388140:intron | 35.0% | |
| TGTAACATATTGCTTTGTGC+AGG | - | tig0021036:67083-67102 | Msa1388140:intron | 35.0% | |
| GTAACATATTGCTTTGTGCA+GGG | - | tig0021036:67084-67103 | Msa1388140:intron | 35.0% | |
| ATGCAGTATGTCTTGCATTA+TGG | + | tig0021036:67174-67193 | Msa1388140:intergenic | 35.0% | |
| AGCTCATGATTCTTTCTTTC+AGG | - | tig0021036:67255-67274 | Msa1388140:intron | 35.0% | |
| GCTAAACCAGAGAAAACTAT+AGG | - | tig0021036:67621-67640 | Msa1388140:intron | 35.0% | |
| ! | TCGTTTTGTGGAAAGGTTAT+TGG | + | tig0021036:67733-67752 | Msa1388140:intergenic | 35.0% |
| GAAGATAGTCCAATAGTTAG+AGG | - | tig0021036:67927-67946 | Msa1388140:intron | 35.0% | |
| AGTCCAATAGTTAGAGGTAA+AGG | - | tig0021036:67933-67952 | Msa1388140:intron | 35.0% | |
| GTCCAATAGTTAGAGGTAAA+GGG | - | tig0021036:67934-67953 | Msa1388140:intron | 35.0% | |
| TTCCCTTTACCTCTAACTAT+TGG | + | tig0021036:67939-67958 | Msa1388140:intergenic | 35.0% | |
| ! | CAACAAAGTCTTTTCTCATC+AGG | + | tig0021036:68047-68066 | Msa1388140:intergenic | 35.0% |
| TAGTATGAATGCTTAGTGGA+AGG | - | tig0021036:68172-68191 | Msa1388140:intron | 35.0% | |
| TTGAAAAACTCGAATGACGT+CGG | + | tig0021036:68262-68281 | Msa1388140:intergenic | 35.0% | |
| !!! | GTCATTCGAGTTTTTCAAGA+AGG | - | tig0021036:68264-68283 | Msa1388140:intron | 35.0% |
| CAAAAAACCTTCTCAAAAGG+AGG | - | tig0021036:68324-68343 | Msa1388140:intron | 35.0% | |
| ! | GGTATAGAGCAATTTTGCAA+TGG | + | tig0021036:68609-68628 | Msa1388140:intergenic | 35.0% |
| TTGCAAAATTGCTCTATACC+AGG | - | tig0021036:68609-68628 | Msa1388140:intron | 35.0% | |
| TGCAAAATTGCTCTATACCA+GGG | - | tig0021036:68610-68629 | Msa1388140:intron | 35.0% | |
| !!! | TGATCATCTTTTTTCAACCC+TGG | + | tig0021036:68630-68649 | Msa1388140:intergenic | 35.0% |
| AGAAAATAGAATCATGCTGG+AGG | - | tig0021036:68661-68680 | Msa1388140:CDS | 35.0% | |
| TATGTAAGTGTCCCTAACAT+AGG | - | tig0021036:68707-68726 | Msa1388140:intron | 35.0% | |
| TGAATACCAAGCTTTGCAAA+TGG | - | tig0021036:68898-68917 | Msa1388140:CDS | 35.0% | |
| ! | CGAGAAATGGGTTTCCAAAA+CGG | + | tig0021036:65807-65826 | Msa1388140:intergenic | 40.0% |
| GATTCACCTTTCTTCGCTAT+CGG | - | tig0021036:65840-65859 | Msa1388140:three_prime_UTR | 40.0% | |
| ACGAGAACTTCTTGTCAAAC+AGG | - | tig0021036:65872-65891 | Msa1388140:three_prime_UTR | 40.0% | |
| ACAAGAGAAGGAACAGTTTG+AGG | - | tig0021036:66038-66057 | Msa1388140:three_prime_UTR | 40.0% | |
| GTTTGAGGACTTGATACAAG+AGG | - | tig0021036:66053-66072 | Msa1388140:three_prime_UTR | 40.0% | |
| TAGACGAACACAATAAGGCT+CGG | + | tig0021036:66226-66245 | Msa1388140:intergenic | 40.0% | |
| ATCCTGGATGGAACAACTAT+TGG | - | tig0021036:66343-66362 | Msa1388140:CDS | 40.0% | |
| AACCAATAGTTGTTCCATCC+AGG | + | tig0021036:66348-66367 | Msa1388140:intergenic | 40.0% | |
| CTAGTAATATGGAATTCCGC+TGG | + | tig0021036:66387-66406 | Msa1388140:intergenic | 40.0% | |
| TGAGGCCATGTTTGAATTTG+CGG | + | tig0021036:66976-66995 | Msa1388140:intergenic | 40.0% | |
| ! | GTTTGGCCTATAGTTTTCTC+TGG | + | tig0021036:67630-67649 | Msa1388140:intergenic | 40.0% |
| TGTTGGAATGTCATGCGTTT+GGG | + | tig0021036:67760-67779 | Msa1388140:intergenic | 40.0% | |
| TTGTTGGAATGTCATGCGTT+TGG | + | tig0021036:67761-67780 | Msa1388140:intergenic | 40.0% | |
| CAGAGATAACATGAGGTTGT+TGG | + | tig0021036:67777-67796 | Msa1388140:intergenic | 40.0% | |
| GGGAAACCAGAGAAAGTTAT+AGG | - | tig0021036:67954-67973 | Msa1388140:intron | 40.0% | |
| TGAAAAACTCGAATGACGTC+GGG | + | tig0021036:68261-68280 | Msa1388140:intergenic | 40.0% | |
| !! | GAAGTATCCTCCTTTTGAGA+AGG | + | tig0021036:68334-68353 | Msa1388140:intergenic | 40.0% |
| TCTCAAAAGGAGGATACTTC+AGG | - | tig0021036:68334-68353 | Msa1388140:intron | 40.0% | |
| ! | TACTTCAGGAATGATGGAAG+TGG | - | tig0021036:68348-68367 | Msa1388140:intron | 40.0% |
| ATCTAGACACTGCTGAAACA+AGG | + | tig0021036:68393-68412 | Msa1388140:intergenic | 40.0% | |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | tig0021036:68459-68478 | Msa1388140:intergenic | 40.0% |
| ! | AGAGCAATTTTGCAATGGGA+CGG | + | tig0021036:68604-68623 | Msa1388140:intergenic | 40.0% |
| TGGGCACAAAACCTATGTTA+GGG | + | tig0021036:68721-68740 | Msa1388140:intergenic | 40.0% | |
| ATGGGCACAAAACCTATGTT+AGG | + | tig0021036:68722-68741 | Msa1388140:intergenic | 40.0% | |
| CGAAGAAAGGTGAATCGTGT+TGG | + | tig0021036:65836-65855 | Msa1388140:intergenic | 45.0% | |
| AGGTTACCGATAGCGAAGAA+AGG | + | tig0021036:65849-65868 | Msa1388140:intergenic | 45.0% | |
| TGACAAGAAGTTCTCGTTCG+AGG | + | tig0021036:65869-65888 | Msa1388140:intergenic | 45.0% | |
| GGCTTATTCGACCTCAATCT+CGG | - | tig0021036:66171-66190 | Msa1388140:exon | 45.0% | |
| CAGTTAAGGACGAATCGATC+AGG | - | tig0021036:66305-66324 | Msa1388140:CDS | 45.0% | |
| GACGAATCGATCAGGAGAAT+CGG | - | tig0021036:66313-66332 | Msa1388140:CDS | 45.0% | |
| GAGAATCGGAATTCGAATCC+TGG | - | tig0021036:66327-66346 | Msa1388140:CDS | 45.0% | |
| ATCGGAATTCGAATCCTGGA+TGG | - | tig0021036:66331-66350 | Msa1388140:CDS | 45.0% | |
| TAATATGGAATTCCGCTGGG+AGG | + | tig0021036:66383-66402 | Msa1388140:intergenic | 45.0% | |
| ATAAGGCGTGCTAATTTGGG+TGG | - | tig0021036:66467-66486 | Msa1388140:CDS | 45.0% | |
| TAAGGCGTGCTAATTTGGGT+GGG | - | tig0021036:66468-66487 | Msa1388140:CDS | 45.0% | |
| ! | GAAACGAATCTGAGACCTTG+AGG | + | tig0021036:66535-66554 | Msa1388140:intergenic | 45.0% |
| AAGTCTTCTGTCCCATTGCT+GGG | - | tig0021036:67107-67126 | Msa1388140:intron | 45.0% | |
| ! | AGCACGTTTGGCTTCAATTG+AGG | - | tig0021036:67135-67154 | Msa1388140:intron | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | tig0021036:67197-67216 | Msa1388140:intergenic | 45.0% |
| ATGCTGAGCAAACGTGATGT+GGG | + | tig0021036:67223-67242 | Msa1388140:intergenic | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | tig0021036:67224-67243 | Msa1388140:intergenic | 45.0% | |
| TTTCAGGCAAAAGTTGCACG+TGG | - | tig0021036:67271-67290 | Msa1388140:intron | 45.0% | |
| ! | AAGTCTTTTCTCATCAGGCG+AGG | + | tig0021036:68042-68061 | Msa1388140:intergenic | 45.0% |
| GAATGCTTAGTGGAAGGTTG+CGG | - | tig0021036:68178-68197 | Msa1388140:intron | 45.0% | |
| CTCTGCCTTCAAAGAAACAC+AGG | - | tig0021036:68287-68306 | Msa1388140:intron | 45.0% | |
| GGAGGATACTTCAGGAATGA+TGG | - | tig0021036:68342-68361 | Msa1388140:intron | 45.0% | |
| GGAAGTGGAAAATGCAGCTA+TGG | - | tig0021036:68363-68382 | Msa1388140:intron | 45.0% | |
| AAAGCTGATAGAGGAAGGAG+TGG | + | tig0021036:68431-68450 | Msa1388140:intergenic | 45.0% | |
| ACTCCTTCCTCTATCAGCTT+TGG | - | tig0021036:68430-68449 | Msa1388140:intron | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | tig0021036:68467-68486 | Msa1388140:intergenic | 45.0% | |
| !! | TCAAAATAATTATAATAATA+AGG | - | tig0021036:66592-66611 | Msa1388140:intron | 5.0% |
| TGTCTCTGCAACCGAGATTG+AGG | + | tig0021036:66185-66204 | Msa1388140:intergenic | 50.0% | |
| CGTGCTAATTTGGGTGGGTA+TGG | - | tig0021036:66473-66492 | Msa1388140:CDS | 50.0% | |
| GCTAATTTGGGTGGGTATGG+TGG | - | tig0021036:66476-66495 | Msa1388140:CDS | 50.0% | |
| ! | ATCTGAGACCTTGAGGAGGA+GGG | + | tig0021036:66528-66547 | Msa1388140:intergenic | 50.0% |
| ! | AATCTGAGACCTTGAGGAGG+AGG | + | tig0021036:66529-66548 | Msa1388140:intergenic | 50.0% |
| ! | ACGAATCTGAGACCTTGAGG+AGG | + | tig0021036:66532-66551 | Msa1388140:intergenic | 50.0% |
| TTTCGCCCTTGTGCCAGTTT+GGG | - | tig0021036:66551-66570 | Msa1388140:intron | 50.0% | |
| GAAGTCTTCTGTCCCATTGC+TGG | - | tig0021036:67106-67125 | Msa1388140:intron | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | tig0021036:67222-67241 | Msa1388140:intergenic | 50.0% | |
| AGTTGCACGTGGCTATGACA+TGG | - | tig0021036:67282-67301 | Msa1388140:intron | 50.0% | |
| ! | GGGCGTTTCGTTTTGTGGAA+AGG | + | tig0021036:67740-67759 | Msa1388140:intergenic | 50.0% |
| ! | CGTTTGGGCGTTTCGTTTTG+TGG | + | tig0021036:67745-67764 | Msa1388140:intergenic | 50.0% |
| CGACCAAAGCTGATAGAGGA+AGG | + | tig0021036:68436-68455 | Msa1388140:intergenic | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | tig0021036:68448-68467 | Msa1388140:intron | 50.0% | |
| CTGGCACCATTTGCAAAGCT+TGG | + | tig0021036:68907-68926 | Msa1388140:intergenic | 50.0% | |
| ! | TTGGGTGGGTATGGTGGTGT+TGG | - | tig0021036:66482-66501 | Msa1388140:CDS | 55.0% |
| ! | AGGAGGAGGGGCATATTCCA+AGG | + | tig0021036:66515-66534 | Msa1388140:intergenic | 55.0% |
| GAATATGCCCCTCCTCCTCA+AGG | - | tig0021036:66517-66536 | Msa1388140:CDS | 55.0% | |
| ! | TCTGAGACCTTGAGGAGGAG+GGG | + | tig0021036:66527-66546 | Msa1388140:intergenic | 55.0% |
| GTTTCGCCCTTGTGCCAGTT+TGG | - | tig0021036:66550-66569 | Msa1388140:intron | 55.0% | |
| CTAAGCTAGCCCTCCCAAAC+TGG | + | tig0021036:66567-66586 | Msa1388140:intergenic | 55.0% | |
| TTCTGTCCCATTGCTGGGTG+TGG | - | tig0021036:67112-67131 | Msa1388140:intron | 55.0% | |
| ACGGCGACCAAAGCTGATAG+AGG | + | tig0021036:68440-68459 | Msa1388140:intergenic | 55.0% | |
| GCGTGGGAAGGGATCTAACT+CGG | - | tig0021036:68498-68517 | Msa1388140:intron | 55.0% | |
| CGTGGGAAGGGATCTAACTC+GGG | - | tig0021036:68499-68518 | Msa1388140:intron | 55.0% | |
| !! | GTGGTGTTGGCTCGAGACCT+TGG | - | tig0021036:66495-66514 | Msa1388140:CDS | 60.0% |
| GCCCTTGTGCCAGTTTGGGA+GGG | - | tig0021036:66555-66574 | Msa1388140:intron | 60.0% | |
| GCCCTCCCAAACTGGCACAA+GGG | + | tig0021036:66559-66578 | Msa1388140:intergenic | 60.0% | |
| AGCCCTCCCAAACTGGCACA+AGG | + | tig0021036:66560-66579 | Msa1388140:intergenic | 60.0% | |
| CGTGCTCCACACCCAGCAAT+GGG | + | tig0021036:67121-67140 | Msa1388140:intergenic | 60.0% | |
| ACGTGCTCCACACCCAGCAA+TGG | + | tig0021036:67122-67141 | Msa1388140:intergenic | 60.0% | |
| TGCTGGGTGTGGAGCACGTT+TGG | - | tig0021036:67123-67142 | Msa1388140:intron | 60.0% | |
| TCCCTCGAGCTGTTCAGCGT+GGG | - | tig0021036:68482-68501 | Msa1388140:intron | 60.0% | |
| TCCCACGCTGAACAGCTCGA+GGG | + | tig0021036:68486-68505 | Msa1388140:intergenic | 60.0% | |
| TTCCCACGCTGAACAGCTCG+AGG | + | tig0021036:68487-68506 | Msa1388140:intergenic | 60.0% | |
| TCGAGCTGTTCAGCGTGGGA+AGG | - | tig0021036:68486-68505 | Msa1388140:intron | 60.0% | |
| CGAGCTGTTCAGCGTGGGAA+GGG | - | tig0021036:68487-68506 | Msa1388140:intron | 60.0% | |
| CGCCCTTGTGCCAGTTTGGG+AGG | - | tig0021036:66554-66573 | Msa1388140:intron | 65.0% | |
| GTCCCTCGAGCTGTTCAGCG+TGG | - | tig0021036:68481-68500 | Msa1388140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021036 | gene | 65768 | 68959 | 65768 | ID=Msa1388140;Name=Msa1388140 |
| tig0021036 | mRNA | 65768 | 68959 | 65768 | ID=Msa1388140-mRNA-1;Parent=Msa1388140;Name=Msa1388140-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0.25|0.25|1|1|4|416|253 |
| tig0021036 | exon | 65768 | 66552 | 65768 | ID=Msa1388140-mRNA-1:exon:10995;Parent=Msa1388140-mRNA-1 |
| tig0021036 | exon | 67424 | 67622 | 67424 | ID=Msa1388140-mRNA-1:exon:10994;Parent=Msa1388140-mRNA-1 |
| tig0021036 | exon | 68645 | 68712 | 68645 | ID=Msa1388140-mRNA-1:exon:10993;Parent=Msa1388140-mRNA-1 |
| tig0021036 | exon | 68834 | 68959 | 68834 | ID=Msa1388140-mRNA-1:exon:10992;Parent=Msa1388140-mRNA-1 |
| tig0021036 | CDS | 68834 | 68959 | 68834 | ID=Msa1388140-mRNA-1:cds;Parent=Msa1388140-mRNA-1 |
| tig0021036 | CDS | 68645 | 68712 | 68645 | ID=Msa1388140-mRNA-1:cds;Parent=Msa1388140-mRNA-1 |
| tig0021036 | CDS | 67424 | 67622 | 67424 | ID=Msa1388140-mRNA-1:cds;Parent=Msa1388140-mRNA-1 |
| tig0021036 | CDS | 66184 | 66552 | 66184 | ID=Msa1388140-mRNA-1:cds;Parent=Msa1388140-mRNA-1 |
| tig0021036 | three_prime_UTR | 65768 | 66183 | 65768 | ID=Msa1388140-mRNA-1:three_prime_utr;Parent=Msa1388140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
