Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368090 | XP_003607281.2 | 99.174 | 847 | 7 | 0 | 1 | 847 | 547 | 1393 | 0.0 | 1714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368090 | sp|Q9LJD8|M3KE1_ARATH | 73.837 | 860 | 167 | 11 | 1 | 847 | 554 | 1368 | 0.0 | 1249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368090 | G7JPL1 | 99.174 | 847 | 7 | 0 | 1 | 847 | 547 | 1393 | 0.0 | 1714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1264560 | Msa1368090 | -0.807044 | 6.126878e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368090 | MtrunA17_Chr4g0038501 | 99.174 | 847 | 7 | 0 | 1 | 847 | 547 | 1393 | 0.0 | 1714 |
| Msa1368090 | MtrunA17_Chr4g0038091 | 96.340 | 847 | 22 | 3 | 1 | 847 | 543 | 1380 | 0.0 | 1658 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368090 | AT3G13530.1 | 73.837 | 860 | 167 | 11 | 1 | 847 | 554 | 1368 | 0.0 | 1249 |
| Msa1368090 | AT3G07980.1 | 69.849 | 859 | 197 | 12 | 1 | 847 | 559 | 1367 | 0.0 | 1159 |
| Msa1368090 | AT3G07980.3 | 69.849 | 859 | 197 | 12 | 1 | 847 | 374 | 1182 | 0.0 | 1158 |
| Msa1368090 | AT3G07980.2 | 67.520 | 859 | 193 | 12 | 1 | 847 | 559 | 1343 | 0.0 | 1109 |
Find 187 sgRNAs with CRISPR-Local
Find 533 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACCACTTTGGCTGTTAA+TGG | 0.183478 | tig0018619:-9865 | Msa1368090:CDS |
| CAAGAAAATGCTTGTCTTGT+TGG | 0.226084 | tig0018619:-14957 | Msa1368090:CDS |
| AGAGTCGCTCCCAAGAAATT+AGG | 0.241992 | tig0018619:-11882 | Msa1368090:CDS |
| CCCAAGAAATTAGGGACTTT+TGG | 0.269005 | tig0018619:-11873 | Msa1368090:CDS |
| ATAGAAGTTTCCCCTTTATT+TGG | 0.273452 | tig0018619:-9358 | Msa1368090:three_prime_UTR |
| ACCAAAAGTCCCTAATTTCT+TGG | 0.284046 | tig0018619:+11872 | Msa1368090:intergenic |
| GTTCTCCACAATCAGTTTCT+TGG | 0.291076 | tig0018619:+9563 | Msa1368090:intergenic |
| CAGGAACAGGCAGCCGAAAA+TGG | 0.295084 | tig0018619:-10650 | Msa1368090:CDS |
| AAAATAAGCAAACCAAATAA+AGG | 0.308359 | tig0018619:+9346 | Msa1368090:intergenic |
| GAAGGTGCTGCTTCCACATC+TGG | 0.313145 | tig0018619:-11843 | Msa1368090:CDS |
| ATAATATACATACAGGAAAA+TGG | 0.316538 | tig0018619:+9411 | Msa1368090:intergenic |
| ACCTTCTTGAGGATGAGTTT+TGG | 0.326087 | tig0018619:-10484 | Msa1368090:CDS |
| CTCTTTGGTGGTTATTTAAG+TGG | 0.335128 | tig0018619:-9268 | Msa1368090:three_prime_UTR |
| CTACTCAGCAAGAGCAAGTT+AGG | 0.344757 | tig0018619:-12479 | Msa1368090:CDS |
| TAATTTACTCAGGCTTATAA+AGG | 0.347156 | tig0018619:-9788 | Msa1368090:intron |
| CCCCGATCTGGACGTTTCTC+TGG | 0.350705 | tig0018619:-12429 | Msa1368090:CDS |
| GAGAAACTTCAAAACTTGAT+AGG | 0.360007 | tig0018619:-9531 | Msa1368090:CDS |
| TTCTCCACAATCAGTTTCTT+GGG | 0.364012 | tig0018619:+9564 | Msa1368090:intergenic |
| GTAACTCAAGGGAGCAGTTA+AGG | 0.371120 | tig0018619:-10535 | Msa1368090:CDS |
| TAGCCCATGACAATGATAAT+AGG | 0.372101 | tig0018619:-10427 | Msa1368090:CDS |
| TCAGGTGTATTGTCTGGTTC+AGG | 0.376175 | tig0018619:-11801 | Msa1368090:CDS |
| ATTAGTTGGTTCATTAAAAC+CGG | 0.381038 | tig0018619:-15283 | Msa1368090:CDS |
| TGTATGTATATTATTTCGTT+GGG | 0.381489 | tig0018619:-9402 | Msa1368090:three_prime_UTR |
| CCTTCTTTGAGTTCAAGATT+TGG | 0.385315 | tig0018619:+11385 | Msa1368090:intergenic |
| AAATAAGCAAACCAAATAAA+GGG | 0.385529 | tig0018619:+9347 | Msa1368090:intergenic |
| TTGCCGTGGAATACCTGTTT+TGG | 0.386273 | tig0018619:-13515 | Msa1368090:CDS |
| TCGACTCAACGGCCACGTTC+TGG | 0.389737 | tig0018619:-12930 | Msa1368090:CDS |
| GGCTGATTTCTTATGCTCAA+TGG | 0.391879 | tig0018619:-9243 | Msa1368090:three_prime_UTR |
| GTTCTACCCTATTAAACATC+TGG | 0.400175 | tig0018619:+11592 | Msa1368090:intergenic |
| GAGTCGCTCCCAAGAAATTA+GGG | 0.401743 | tig0018619:-11881 | Msa1368090:CDS |
| ATATTATTTCGTTGGGGAAA+AGG | 0.404241 | tig0018619:-9395 | Msa1368090:three_prime_UTR |
| TAGGCCTCTTCTTAGCTTGT+TGG | 0.405908 | tig0018619:-12460 | Msa1368090:CDS |
| TCCAGAGAAACGTCCAGATC+GGG | 0.408331 | tig0018619:+12428 | Msa1368090:intergenic |
| CAACTTCTGTCTCAGGGAAA+TGG | 0.408669 | tig0018619:-13138 | Msa1368090:intron |
| TGTAGTACCTTCAACAAAAT+AGG | 0.408921 | tig0018619:+11567 | Msa1368090:intergenic |
| ACAATCAGTTTCTTGGGCTG+AGG | 0.409891 | tig0018619:+9570 | Msa1368090:intergenic |
| TCAAGAAATCCCACCAAAAC+AGG | 0.410631 | tig0018619:+13502 | Msa1368090:intergenic |
| GATTAGCATCTATGTCTGTT+GGG | 0.416441 | tig0018619:-12974 | Msa1368090:CDS |
| TAACTCAAGGGAGCAGTTAA+GGG | 0.417877 | tig0018619:-10534 | Msa1368090:CDS |
| CCAGGTAGTGCTACTTCATC+TGG | 0.420683 | tig0018619:-11762 | Msa1368090:CDS |
| GAATAAAACAAATGGTGAAC+TGG | 0.422829 | tig0018619:-12331 | Msa1368090:CDS |
| CCAAAAGTCCCTAATTTCTT+GGG | 0.423004 | tig0018619:+11873 | Msa1368090:intergenic |
| GTCTTGGTATTTCCGCCAAC+AGG | 0.424110 | tig0018619:-12566 | Msa1368090:CDS |
| ACGGCCACGTTCTGGTATCT+TGG | 0.427195 | tig0018619:-12922 | Msa1368090:CDS |
| TTGCTGTACCCGATCGTCCC+CGG | 0.437546 | tig0018619:-13701 | Msa1368090:CDS |
| TTGGTACCTGCAGAGGAAAA+AGG | 0.439382 | tig0018619:+16502 | Msa1368090:intergenic |
| ACTTCTAGCAAGTCAGTTAG+AGG | 0.440818 | tig0018619:+15156 | Msa1368090:intergenic |
| TTGGAGAAAGAGCCCCGATC+TGG | 0.442817 | tig0018619:-12441 | Msa1368090:CDS |
| CTGTATGTATATTATTTCGT+TGG | 0.443218 | tig0018619:-9403 | Msa1368090:three_prime_UTR |
| GTTAAGGGCTCATGGTGGTT+TGG | 0.444354 | tig0018619:-10519 | Msa1368090:CDS |
| GAGGAATGGAGGACGAAGAA+TGG | 0.446923 | tig0018619:+12790 | Msa1368090:intergenic |
| CGATTAGCATCTATGTCTGT+TGG | 0.448128 | tig0018619:-12975 | Msa1368090:CDS |
| AAAGTCTACTGAGCAAGCTT+TGG | 0.451295 | tig0018619:+11616 | Msa1368090:intergenic |
| CGCTATTGATGGCATGTGGC+AGG | 0.451313 | tig0018619:-13108 | Msa1368090:CDS |
| CAGCCAAAGTGGTATTGATC+CGG | 0.451921 | tig0018619:+9872 | Msa1368090:intergenic |
| GAGGTCTATCAACATCCATT+TGG | 0.454895 | tig0018619:+12748 | Msa1368090:intergenic |
| ATGTGTACAAAATGCGGCTC+TGG | 0.459739 | tig0018619:+10338 | Msa1368090:intergenic |
| GCAAGATTCAAACTCTTCTC+TGG | 0.461832 | tig0018619:+12687 | Msa1368090:intergenic |
| GCCTCTGAGAATAAAACAAA+TGG | 0.465348 | tig0018619:-12339 | Msa1368090:CDS |
| ATGGTTCATCTCGCTATTGA+TGG | 0.466101 | tig0018619:-13119 | Msa1368090:CDS |
| AGAAACTTCAAAACTTGATA+GGG | 0.466854 | tig0018619:-9530 | Msa1368090:CDS |
| ATCGTATCTCAGACAGCATC+AGG | 0.466946 | tig0018619:-11819 | Msa1368090:CDS |
| TGACAGAAACTTCCTCGAAC+GGG | 0.470983 | tig0018619:-12518 | Msa1368090:CDS |
| ACGAATCTCCCGGGGACGAT+CGG | 0.471209 | tig0018619:+13692 | Msa1368090:intergenic |
| AAATAAGCGGAGACAGGAAC+AGG | 0.471794 | tig0018619:-10663 | Msa1368090:CDS |
| TTCTCAGAGGCATGCAGCAA+AGG | 0.475856 | tig0018619:+12351 | Msa1368090:intergenic |
| CCAAATCTTGAACTCAAAGA+AGG | 0.475872 | tig0018619:-11385 | Msa1368090:CDS |
| AATGCGGCTCTGGACAGCTC+TGG | 0.476621 | tig0018619:+10348 | Msa1368090:intergenic |
| ATCACGTCTTCTGATTCCTC+CGG | 0.477137 | tig0018619:+15264 | Msa1368090:intergenic |
| GTCAGATTCTAACTACCAAA+TGG | 0.480148 | tig0018619:-12763 | Msa1368090:CDS |
| TCTTTGGTGGTTATTTAAGT+GGG | 0.481912 | tig0018619:-9267 | Msa1368090:three_prime_UTR |
| CCTTCCTATTATCATTGTCA+TGG | 0.483317 | tig0018619:+10423 | Msa1368090:intergenic |
| AAATGCTTGTCTTGTTGGAT+TGG | 0.485876 | tig0018619:-14952 | Msa1368090:intron |
| AGCAATTTGGATCAGTTGAC+AGG | 0.486039 | tig0018619:+11449 | Msa1368090:intergenic |
| TCTCAACGTGGAAGGGAAAA+CGG | 0.488875 | tig0018619:-11936 | Msa1368090:CDS |
| TACAGCAGCTTTGTCAGTCA+AGG | 0.495702 | tig0018619:-13650 | Msa1368090:intron |
| TTACAAACTAATTTACAAAA+CGG | 0.495998 | tig0018619:+9437 | Msa1368090:intergenic |
| TGTTGCTGATAACCCGTTCG+AGG | 0.499009 | tig0018619:+12506 | Msa1368090:intergenic |
| GTTGAGTTCAGCAAATTAGT+TGG | 0.499715 | tig0018619:-15297 | Msa1368090:CDS |
| TGCTGTACCCGATCGTCCCC+GGG | 0.500851 | tig0018619:-13700 | Msa1368090:CDS |
| CAATCAGTTTCTTGGGCTGA+GGG | 0.501754 | tig0018619:+9571 | Msa1368090:intergenic |
| TCTGCTTGTCAGAAACTCAT+TGG | 0.505127 | tig0018619:-15237 | Msa1368090:CDS |
| AGGAATGGAGGACGAAGAAT+GGG | 0.506216 | tig0018619:+12791 | Msa1368090:intergenic |
| TCGAACGGGTTATCAGCAAC+AGG | 0.508510 | tig0018619:-12504 | Msa1368090:CDS |
| GAGTTTGAATCTTGCATCCA+GGG | 0.508606 | tig0018619:-12679 | Msa1368090:CDS |
| CTTCCTATTATCATTGTCAT+GGG | 0.508908 | tig0018619:+10424 | Msa1368090:intergenic |
| TGCTTCCATACGAATCTCCC+GGG | 0.509294 | tig0018619:+13683 | Msa1368090:intergenic |
| GCTGCCGCATTGCTTGATTG+AGG | 0.509597 | tig0018619:+12729 | Msa1368090:intergenic |
| CGAATCTCCCGGGGACGATC+GGG | 0.509985 | tig0018619:+13693 | Msa1368090:intergenic |
| CAACGAAATAATATACATAC+AGG | 0.510038 | tig0018619:+9404 | Msa1368090:intergenic |
| TCTCAGAGGCATGCAGCAAA+GGG | 0.510090 | tig0018619:+12352 | Msa1368090:intergenic |
| CAAGATAAATAAGCGGAGAC+AGG | 0.510370 | tig0018619:-10669 | Msa1368090:CDS |
| AGAGAGAAAACGTGGATCGT+TGG | 0.511105 | tig0018619:-12632 | Msa1368090:CDS |
| CTGCTTCCATACGAATCTCC+CGG | 0.511233 | tig0018619:+13682 | Msa1368090:intergenic |
| ACAGCATCAGGTGTATTGTC+TGG | 0.514131 | tig0018619:-11807 | Msa1368090:CDS |
| TCAAGCCTTGCAACGAGTAA+TGG | 0.514720 | tig0018619:+9835 | Msa1368090:intergenic |
| AGAGTTTGAATCTTGCATCC+AGG | 0.516387 | tig0018619:-12680 | Msa1368090:CDS |
| GTCCAGAGAAACGTCCAGAT+CGG | 0.522434 | tig0018619:+12427 | Msa1368090:intergenic |
| CCAGATGAAGTAGCACTACC+TGG | 0.525805 | tig0018619:+11762 | Msa1368090:intergenic |
| TGCCCGGATCAATACCACTT+TGG | 0.530797 | tig0018619:-9875 | Msa1368090:CDS |
| CTCATGCATCTCGTAACTCA+AGG | 0.532861 | tig0018619:-10547 | Msa1368090:CDS |
| TTGATGTGATGAACTGCATC+AGG | 0.532918 | tig0018619:+10615 | Msa1368090:intergenic |
| ATAAGTTGAACAATGCGTTC+AGG | 0.535668 | tig0018619:+10693 | Msa1368090:intergenic |
| ATCTGTTGATGTCCTGTTGG+CGG | 0.536875 | tig0018619:+12554 | Msa1368090:intergenic |
| TGTACCCGCTGAAGATTCCC+TGG | 0.537021 | tig0018619:+12662 | Msa1368090:intergenic |
| TAGTTAGAATCTGACCTTCG+AGG | 0.540629 | tig0018619:+12771 | Msa1368090:intergenic |
| ACAGCAAAGCTCATGACTGC+AGG | 0.541495 | tig0018619:+13717 | Msa1368090:intergenic |
| ATTAGCATCTATGTCTGTTG+GGG | 0.541903 | tig0018619:-12973 | Msa1368090:CDS |
| CAGATGTTTCTCAACGTGGA+AGG | 0.543850 | tig0018619:-11944 | Msa1368090:CDS |
| AGAATCTGACCTTCGAGGAA+TGG | 0.545164 | tig0018619:+12776 | Msa1368090:intergenic |
| CATATTTCAGAAAATCTGCC+CGG | 0.547380 | tig0018619:-9891 | Msa1368090:intron |
| TAACTCCATTACTCGTTGCA+AGG | 0.549297 | tig0018619:-9840 | Msa1368090:CDS |
| TGTCTATTTGAACCTTCTTG+AGG | 0.550469 | tig0018619:-10495 | Msa1368090:CDS |
| AGCCAAAGTGGTATTGATCC+GGG | 0.550603 | tig0018619:+9873 | Msa1368090:intergenic |
| GAAGTGTATTTATAAGCCTA+AGG | 0.550921 | tig0018619:+13018 | Msa1368090:intergenic |
| CCAACAGGACATCAACAGAT+AGG | 0.552805 | tig0018619:-12551 | Msa1368090:CDS |
| AACTAATTTGCTGAACTCAA+CGG | 0.555149 | tig0018619:+15299 | Msa1368090:intergenic |
| ATTGCCTCTGTTGTGCGACA+TGG | 0.555660 | tig0018619:-10570 | Msa1368090:CDS |
| TAGCTCGGCTTAATTTACTC+AGG | 0.557677 | tig0018619:-9798 | Msa1368090:CDS |
| GGCAATGCATATTGCTTCAG+AGG | 0.559361 | tig0018619:+10587 | Msa1368090:intergenic |
| TAGAGGAAGTAAACCATGCT+GGG | 0.559499 | tig0018619:+15173 | Msa1368090:intergenic |
| TTGACAGAAACTTCCTCGAA+CGG | 0.561034 | tig0018619:-12519 | Msa1368090:CDS |
| AAACTGATTATGCCAAGTAC+AGG | 0.561338 | tig0018619:-13480 | Msa1368090:intron |
| TAGTTCATCAATAACTCAAG+TGG | 0.561751 | tig0018619:+9101 | Msa1368090:intergenic |
| TAGTTGATGGTTCGACTCAA+CGG | 0.562336 | tig0018619:-12941 | Msa1368090:CDS |
| AAGGTGCTGCTTCCACATCT+GGG | 0.566229 | tig0018619:-11842 | Msa1368090:CDS |
| AGGGAGCAGTTAAGGGCTCA+TGG | 0.566417 | tig0018619:-10527 | Msa1368090:CDS |
| TCCAATATGTGTACAAAATG+CGG | 0.567166 | tig0018619:+10332 | Msa1368090:intergenic |
| TTGGTGGTTATTTAAGTGGG+TGG | 0.568099 | tig0018619:-9264 | Msa1368090:three_prime_UTR |
| ATCTGGACTACTTTCCCACA+TGG | 0.573721 | tig0018619:-11745 | Msa1368090:CDS |
| TCGTCCCCGGGAGATTCGTA+TGG | 0.574541 | tig0018619:-13688 | Msa1368090:CDS |
| TTCTCCAACAAGCTAAGAAG+AGG | 0.576408 | tig0018619:+12456 | Msa1368090:intergenic |
| CAAATCTTGAACTCAAAGAA+GGG | 0.576709 | tig0018619:-11384 | Msa1368090:CDS |
| ATCATCAAGATGCTATAGCT+CGG | 0.577630 | tig0018619:-9813 | Msa1368090:CDS |
| TTAGAGGAAGTAAACCATGC+TGG | 0.581177 | tig0018619:+15172 | Msa1368090:intergenic |
| TCTTTGAGACACTCTAGCAC+TGG | 0.581560 | tig0018619:+11902 | Msa1368090:intergenic |
| TAATCCATTAACAGCCAAAG+TGG | 0.581848 | tig0018619:+9861 | Msa1368090:intergenic |
| CTTCGTCCTCCATTCCTCGA+AGG | 0.582239 | tig0018619:-12785 | Msa1368090:CDS |
| AAAGGCCTTGGTACCTGCAG+AGG | 0.584057 | tig0018619:+16495 | Msa1368090:intergenic |
| TCAAGTGTTGGTCAAACAGA+TGG | 0.590516 | tig0018619:-9493 | Msa1368090:CDS |
| CCTATCTGTTGATGTCCTGT+TGG | 0.590986 | tig0018619:+12551 | Msa1368090:intergenic |
| GAACTCAGACAACAACGTCT+TGG | 0.591585 | tig0018619:-12582 | Msa1368090:CDS |
| ACGCAGAGATGGTCAAGTGT+TGG | 0.591871 | tig0018619:-9505 | Msa1368090:CDS |
| CTGAGATACGATCCCAGATG+TGG | 0.592179 | tig0018619:+11830 | Msa1368090:intergenic |
| TTGATAGGGGAACGCAGAGA+TGG | 0.592517 | tig0018619:-9516 | Msa1368090:CDS |
| TGAACAAGCACTGCTGAGGA+AGG | 0.594945 | tig0018619:-10399 | Msa1368090:CDS |
| GCATCCAGGGAATCTTCAGC+GGG | 0.599089 | tig0018619:-12666 | Msa1368090:CDS |
| ACCAAAACTCATCCTCAAGA+AGG | 0.601761 | tig0018619:+10483 | Msa1368090:intergenic |
| ATCTGACCTTCGAGGAATGG+AGG | 0.601887 | tig0018619:+12779 | Msa1368090:intergenic |
| AGATGTTTCTCAACGTGGAA+GGG | 0.612032 | tig0018619:-11943 | Msa1368090:CDS |
| GAAACTTCAAAACTTGATAG+GGG | 0.613146 | tig0018619:-9529 | Msa1368090:CDS |
| AATAAGCAAACCAAATAAAG+GGG | 0.613371 | tig0018619:+9348 | Msa1368090:intergenic |
| CAAATGTTTATAGCTTGCCG+TGG | 0.616905 | tig0018619:-13529 | Msa1368090:CDS |
| ATCTCGCTATTGATGGCATG+TGG | 0.620373 | tig0018619:-13112 | Msa1368090:CDS |
| AGTTGGTTCATTAAAACCGG+AGG | 0.622554 | tig0018619:-15280 | Msa1368090:CDS |
| GTATGTATATTATTTCGTTG+GGG | 0.624190 | tig0018619:-9401 | Msa1368090:three_prime_UTR |
| GATCTCACTAAACTGAGGCA+TGG | 0.626150 | tig0018619:-12840 | Msa1368090:CDS |
| TCAGCCCAAGAAACTGATTG+TGG | 0.626676 | tig0018619:-9568 | Msa1368090:CDS |
| CCATGACAATGATAATAGGA+AGG | 0.627046 | tig0018619:-10423 | Msa1368090:CDS |
| TCATGCATCTCGTAACTCAA+GGG | 0.628312 | tig0018619:-10546 | Msa1368090:CDS |
| AGTTCAACATCAGCTCGAGA+AGG | 0.633718 | tig0018619:+12600 | Msa1368090:intergenic |
| AGGTTGAACAAGCACTGCTG+AGG | 0.636269 | tig0018619:-10403 | Msa1368090:CDS |
| CCACCAAAACAGGTATTCCA+CGG | 0.637705 | tig0018619:+13512 | Msa1368090:intergenic |
| AGATTCAAACTCTTCTCTGG+TGG | 0.639020 | tig0018619:+12690 | Msa1368090:intergenic |
| AGAAAATCTTCAGCGTGCTG+AGG | 0.642392 | tig0018619:-11425 | Msa1368090:CDS |
| TGCATCCAGGGAATCTTCAG+CGG | 0.645427 | tig0018619:-12667 | Msa1368090:CDS |
| ATACATTAAATATACATACC+TGG | 0.646606 | tig0018619:+9207 | Msa1368090:intergenic |
| TTAGCATCTATGTCTGTTGG+GGG | 0.647506 | tig0018619:-12972 | Msa1368090:CDS |
| ATGTGATGAACTGCATCAGG+TGG | 0.648812 | tig0018619:+10618 | Msa1368090:intergenic |
| ACTTATGCAAGATAAATAAG+CGG | 0.655926 | tig0018619:-10676 | Msa1368090:CDS |
| ATGGAGGACGAAGAATGGGA+AGG | 0.660735 | tig0018619:+12795 | Msa1368090:intergenic |
| CCAGAGAAACGTCCAGATCG+GGG | 0.666341 | tig0018619:+12429 | Msa1368090:intergenic |
| GGTGTTCTAAATGCTAGACC+AGG | 0.672502 | tig0018619:-11780 | Msa1368090:CDS |
| TGTGATGAACTGCATCAGGT+GGG | 0.676946 | tig0018619:+10619 | Msa1368090:intergenic |
| ATTGAAAGAGAGAGAAAACG+TGG | 0.677041 | tig0018619:-12640 | Msa1368090:CDS |
| AGTACCTTCAACAAAATAGG+TGG | 0.684443 | tig0018619:+11570 | Msa1368090:intergenic |
| AGCATGATCTCACTAAACTG+AGG | 0.695824 | tig0018619:-12845 | Msa1368090:CDS |
| TGAGCCATGTCGCACAACAG+AGG | 0.705775 | tig0018619:+10566 | Msa1368090:intergenic |
| CATTCAATGATGAAACCATG+TGG | 0.710502 | tig0018619:+11730 | Msa1368090:intergenic |
| GCTTCCATACGAATCTCCCG+GGG | 0.719618 | tig0018619:+13684 | Msa1368090:intergenic |
| ATTCAATGATGAAACCATGT+GGG | 0.724918 | tig0018619:+11731 | Msa1368090:intergenic |
| GTGATGAACTGCATCAGGTG+GGG | 0.726156 | tig0018619:+10620 | Msa1368090:intergenic |
| TGTGCAGATGTTTCTCAACG+TGG | 0.729524 | tig0018619:-11948 | Msa1368090:intron |
| TGTATCAGAGATACATCACG+AGG | 0.745464 | tig0018619:-11356 | Msa1368090:intron |
| GAGCAGTTAAGGGCTCATGG+TGG | 0.751798 | tig0018619:-10524 | Msa1368090:CDS |
| GGATCCAAGATACCAGAACG+TGG | 0.761044 | tig0018619:+12918 | Msa1368090:intergenic |
| TAGACCTCAATCAAGCAATG+CGG | 0.772466 | tig0018619:-12733 | Msa1368090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCTTCATTATTATTATT+TGG | - | tig0018619:10951-10970 | Msa1368090:intron | 10.0% |
| !! | TTAGTTATATAAAAATGAAA+TGG | + | tig0018619:11834-11853 | Msa1368090:intergenic | 10.0% |
| !! | ATATAGAAAATCTATAATTA+AGG | + | tig0018619:11939-11958 | Msa1368090:intergenic | 10.0% |
| !!! | TATTTTTATAAATTTTGCTT+AGG | - | tig0018619:12297-12316 | Msa1368090:intron | 10.0% |
| !! | ATAACATAGAAAATTATATT+TGG | + | tig0018619:15778-15797 | Msa1368090:intergenic | 10.0% |
| !!! | TTAGTTTGTATTTTTTGTTA+TGG | - | tig0018619:9357-9376 | Msa1368090:three_prime_UTR | 15.0% |
| !!! | AAAATGTATGAACTTTTTAT+GGG | - | tig0018619:9885-9904 | Msa1368090:intron | 15.0% |
| !! | TATAATCAAATAGAGATATA+GGG | + | tig0018619:10852-10871 | Msa1368090:intergenic | 15.0% |
| !! | ATATAATCAAATAGAGATAT+AGG | + | tig0018619:10853-10872 | Msa1368090:intergenic | 15.0% |
| !! | AAATTTGTCTAAATAATGTT+AGG | - | tig0018619:10894-10913 | Msa1368090:intron | 15.0% |
| !! | AATTTGTCTAAATAATGTTA+GGG | - | tig0018619:10895-10914 | Msa1368090:intron | 15.0% |
| !!! | TTATTGATTTATTTCATAGA+AGG | + | tig0018619:11016-11035 | Msa1368090:intergenic | 15.0% |
| !! | TTATCAAATTTGTATATCAT+TGG | - | tig0018619:11090-11109 | Msa1368090:intron | 15.0% |
| !! | ATATTTAATGCAAAATTTCT+TGG | - | tig0018619:12003-12022 | Msa1368090:intron | 15.0% |
| !!! | AATTTTATGCTTCAAAAATA+AGG | - | tig0018619:12154-12173 | Msa1368090:intron | 15.0% |
| !!! | AACTAAATTTTAACAATATC+AGG | + | tig0018619:14436-14455 | Msa1368090:intergenic | 15.0% |
| !! | ATATTGTTAAAATTTAGTTG+TGG | - | tig0018619:14437-14456 | Msa1368090:intron | 15.0% |
| !! | TGATATTAGTTAAATAGATA+GGG | + | tig0018619:14770-14789 | Msa1368090:intergenic | 15.0% |
| !! | ATGATATTAGTTAAATAGAT+AGG | + | tig0018619:14771-14790 | Msa1368090:intergenic | 15.0% |
| !!! | TATTTTTATTTTCATTCTAC+TGG | - | tig0018619:15812-15831 | Msa1368090:intron | 15.0% |
| !!! | ATTTTTATTTTCATTCTACT+GGG | - | tig0018619:15813-15832 | Msa1368090:intron | 15.0% |
| !!! | TATACTTGTTATAAAATATC+TGG | - | tig0018619:15995-16014 | Msa1368090:intron | 15.0% |
| !! | TTACAAACTAATTTACAAAA+CGG | + | tig0018619:16315-16334 | Msa1368090:intergenic | 15.0% |
| !!! | TTTTGTAAATTAGTTTGTAA+TGG | - | tig0018619:16315-16334 | Msa1368090:intron | 15.0% |
| !! | ATACACTTGTTCTTAAAAAA+TGG | - | tig0018619:9413-9432 | Msa1368090:three_prime_UTR | 20.0% |
| !! | AAAAAAAATCTTCCAAACAT+AGG | + | tig0018619:9467-9486 | Msa1368090:intergenic | 20.0% |
| !! | TCTGAAAACAATTGAAATAA+AGG | + | tig0018619:9715-9734 | Msa1368090:intergenic | 20.0% |
| !!! | TTTTCAGAGTTAAATGTTTT+TGG | - | tig0018619:9727-9746 | Msa1368090:intron | 20.0% |
| !!! | CAAAATGTATGAACTTTTTA+TGG | - | tig0018619:9884-9903 | Msa1368090:CDS | 20.0% |
| !!! | AAATGTATGAACTTTTTATG+GGG | - | tig0018619:9886-9905 | Msa1368090:intron | 20.0% |
| !!! | TTTTTTAGTCCAAATAGAAT+TGG | + | tig0018619:9930-9949 | Msa1368090:intergenic | 20.0% |
| !!! | TCACCTAAAAAATTGAATTT+TGG | - | tig0018619:10093-10112 | Msa1368090:intron | 20.0% |
| !!! | ATGCCAAAATTCAATTTTTT+AGG | + | tig0018619:10099-10118 | Msa1368090:intergenic | 20.0% |
| !!! | TTTTAAAAAAATTCTCTGCA+TGG | + | tig0018619:10365-10384 | Msa1368090:intergenic | 20.0% |
| !!! | GCAGAGAATTTTTTTAAAAT+TGG | - | tig0018619:10366-10385 | Msa1368090:CDS | 20.0% |
| !! | ATCTCTATTTGATTATATGT+TGG | - | tig0018619:10855-10874 | Msa1368090:intron | 20.0% |
| !!! | TATATAACTAAGTTTTGCAT+TGG | - | tig0018619:11843-11862 | Msa1368090:CDS | 20.0% |
| !!! | TTTATAAATTTTGCTTAGGT+AGG | - | tig0018619:12301-12320 | Msa1368090:intron | 20.0% |
| !!! | AGGATTACATTTTACAATTA+TGG | - | tig0018619:12321-12340 | Msa1368090:CDS | 20.0% |
| !! | AATATATGCTAAATTCCTAA+AGG | + | tig0018619:14216-14235 | Msa1368090:intergenic | 20.0% |
| !!! | AAATTTTAACAATATCAGGA+AGG | + | tig0018619:14432-14451 | Msa1368090:intergenic | 20.0% |
| !! | GATATTAGTTAAATAGATAG+GGG | + | tig0018619:14769-14788 | Msa1368090:intergenic | 20.0% |
| !!! | GCTTTTTTTTTTTTTTGACT+TGG | + | tig0018619:14897-14916 | Msa1368090:intergenic | 20.0% |
| !! | CAAACAACTAAATACTTAAT+TGG | + | tig0018619:15496-15515 | Msa1368090:intergenic | 20.0% |
| !! | TTAACCTCATAATAAGAAAA+GGG | + | tig0018619:15588-15607 | Msa1368090:intergenic | 20.0% |
| !! | ATTAACCTCATAATAAGAAA+AGG | + | tig0018619:15589-15608 | Msa1368090:intergenic | 20.0% |
| !! | ATTATGAGGTTAATGAATAT+AGG | - | tig0018619:15595-15614 | Msa1368090:intron | 20.0% |
| !!! | CAAGTATTTCACATTTTTTA+AGG | - | tig0018619:15623-15642 | Msa1368090:intron | 20.0% |
| !!! | ATTTCACATTTTTTAAGGAA+AGG | - | tig0018619:15628-15647 | Msa1368090:intron | 20.0% |
| !! | ATAATATACATACAGGAAAA+TGG | + | tig0018619:16341-16360 | Msa1368090:intergenic | 20.0% |
| !! | TGTATGTATATTATTTCGTT+GGG | - | tig0018619:16347-16366 | Msa1368090:intron | 20.0% |
| !! | AAATAAGCAAACCAAATAAA+GGG | + | tig0018619:16405-16424 | Msa1368090:intergenic | 20.0% |
| !! | AAAATAAGCAAACCAAATAA+AGG | + | tig0018619:16406-16425 | Msa1368090:intergenic | 20.0% |
| !!! | AAAAGTTTTTCTTTACTCTT+TGG | - | tig0018619:16466-16485 | Msa1368090:intron | 20.0% |
| !! | ATACATTAAATATACATACC+TGG | + | tig0018619:16545-16564 | Msa1368090:intergenic | 20.0% |
| !! | AGGTATGTATATTTAATGTA+TGG | - | tig0018619:16544-16563 | Msa1368090:intron | 20.0% |
| !! | TATATTTAATGTATGGATAC+AGG | - | tig0018619:16551-16570 | Msa1368090:intron | 20.0% |
| !! | ATATTTAATGTATGGATACA+GGG | - | tig0018619:16552-16571 | Msa1368090:intron | 20.0% |
| !!! | TGTATCCTTTTAACTTTTTG+TGG | - | tig0018619:9178-9197 | Msa1368090:intron | 25.0% |
| ! | AAATACCTGATAGAAAAATG+AGG | + | tig0018619:9204-9223 | Msa1368090:intergenic | 25.0% |
| !!! | TGTATTTTTTGTTATGGATG+TGG | - | tig0018619:9363-9382 | Msa1368090:three_prime_UTR | 25.0% |
| !!! | GTATTTTTTGTTATGGATGT+GGG | - | tig0018619:9364-9383 | Msa1368090:three_prime_UTR | 25.0% |
| !! | AACATAGGTTCTAATAAACA+GGG | + | tig0018619:9452-9471 | Msa1368090:intergenic | 25.0% |
| !! | AAACATAGGTTCTAATAAAC+AGG | + | tig0018619:9453-9472 | Msa1368090:intergenic | 25.0% |
| ! | TGTTTATTAGAACCTATGTT+TGG | - | tig0018619:9452-9471 | Msa1368090:CDS | 25.0% |
| !! | ATCTAATGTATTGATGTGTT+TGG | - | tig0018619:9686-9705 | Msa1368090:intron | 25.0% |
| !! | ACTAAAAGCACACAATATTT+GGG | + | tig0018619:9807-9826 | Msa1368090:intergenic | 25.0% |
| !! | AACTAAAAGCACACAATATT+TGG | + | tig0018619:9808-9827 | Msa1368090:intergenic | 25.0% |
| ! | AACGTATTTCCAATTCTATT+TGG | - | tig0018619:9918-9937 | Msa1368090:intron | 25.0% |
| !!! | CTAGCAGTCATTTTAATAAA+GGG | + | tig0018619:9962-9981 | Msa1368090:intergenic | 25.0% |
| !!! | ACTAGCAGTCATTTTAATAA+AGG | + | tig0018619:9963-9982 | Msa1368090:intergenic | 25.0% |
| !!! | TAGTTTTTTTTTTCCCTTGA+GGG | - | tig0018619:9979-9998 | Msa1368090:intron | 25.0% |
| !!! | AATTCAATTTTTTAGGTGAC+AGG | + | tig0018619:10092-10111 | Msa1368090:intergenic | 25.0% |
| !!! | AAAAAAATCTGAAAGCATCA+AGG | + | tig0018619:10164-10183 | Msa1368090:intergenic | 25.0% |
| !!! | ATTTCAAGTTCCAATTTTTC+AGG | - | tig0018619:10224-10243 | Msa1368090:intron | 25.0% |
| ! | AAAAGTTATGCCTGAAAAAT+TGG | + | tig0018619:10237-10256 | Msa1368090:intergenic | 25.0% |
| ! | TCACATACAATAACATTGAT+AGG | + | tig0018619:10392-10411 | Msa1368090:intergenic | 25.0% |
| ! | TATCAATGTTATTGTATGTG+AGG | - | tig0018619:10391-10410 | Msa1368090:CDS | 25.0% |
| ! | TGTATTTACCATTACATTGT+AGG | - | tig0018619:10427-10446 | Msa1368090:CDS | 25.0% |
| !! | ATTAGTTGGTTCATTAAAAC+CGG | - | tig0018619:10466-10485 | Msa1368090:CDS | 25.0% |
| !! | AGTCAAATAAAGTATCAAGA+TGG | + | tig0018619:10641-10660 | Msa1368090:intergenic | 25.0% |
| ! | TGGAAACATCTTAAATTCAA+TGG | - | tig0018619:10703-10722 | Msa1368090:intron | 25.0% |
| ! | TTAAATTCAATGGATGTTTC+AGG | - | tig0018619:10713-10732 | Msa1368090:intron | 25.0% |
| ! | GAAATGATCATTTCCTTTAA+AGG | - | tig0018619:11389-11408 | Msa1368090:CDS | 25.0% |
| !! | CTAAAGCAGGTAAATTTTAA+GGG | + | tig0018619:11624-11643 | Msa1368090:intergenic | 25.0% |
| !!! | TCGTTTCAATTTTTTATCCT+CGG | + | tig0018619:11911-11930 | Msa1368090:intergenic | 25.0% |
| ! | AAAATATTTGAGGACACTTT+AGG | + | tig0018619:11974-11993 | Msa1368090:intergenic | 25.0% |
| !!! | TAAAGTGTCCTCAAATATTT+TGG | - | tig0018619:11973-11992 | Msa1368090:intron | 25.0% |
| ! | GAAGCATAAAATTCACATAA+TGG | + | tig0018619:12147-12166 | Msa1368090:intergenic | 25.0% |
| !!! | ATTTATCTGAGGCTATTTTT+GGG | - | tig0018619:12397-12416 | Msa1368090:CDS | 25.0% |
| ! | GGAAACAAATTATCTGATTT+GGG | - | tig0018619:12418-12437 | Msa1368090:CDS | 25.0% |
| !! | GAAACAAATTATCTGATTTG+GGG | - | tig0018619:12419-12438 | Msa1368090:CDS | 25.0% |
| ! | AAGTAGCAAATAGAAAAAAC+AGG | + | tig0018619:12519-12538 | Msa1368090:intergenic | 25.0% |
| ! | ATTACAACAAAACACATACA+TGG | - | tig0018619:13659-13678 | Msa1368090:CDS | 25.0% |
| ! | ATAAAACAGTGTTTCTTTGT+TGG | + | tig0018619:13706-13725 | Msa1368090:intergenic | 25.0% |
| !! | ACTTTTCCAGATGTTTAATA+GGG | - | tig0018619:14151-14170 | Msa1368090:intron | 25.0% |
| !! | TGAAGATTTTCTAAGCAATT+TGG | + | tig0018619:14316-14335 | Msa1368090:intergenic | 25.0% |
| ! | ATTCAAAACTGAACAGAAAA+TGG | - | tig0018619:14645-14664 | Msa1368090:intron | 25.0% |
| ! | ACTTATGCAAGATAAATAAG+CGG | - | tig0018619:15073-15092 | Msa1368090:intron | 25.0% |
| !! | AAATCCCTTTTCTTATTATG+AGG | - | tig0018619:15581-15600 | Msa1368090:intron | 25.0% |
| !!! | CATTTTTTAAGGAAAGGAAA+TGG | - | tig0018619:15634-15653 | Msa1368090:intron | 25.0% |
| ! | TAATTTACTCAGGCTTATAA+AGG | - | tig0018619:15961-15980 | Msa1368090:intron | 25.0% |
| !! | CTTGTTATAAAATATCTGGT+TGG | - | tig0018619:15999-16018 | Msa1368090:intron | 25.0% |
| !!! | AATGTAAGTATAGTTGCTTT+TGG | + | tig0018619:16121-16140 | Msa1368090:intergenic | 25.0% |
| ! | TACATTATCTCAAAATGTTC+TGG | - | tig0018619:16135-16154 | Msa1368090:intron | 25.0% |
| !!! | TATCAAGTTTTGAAGTTTCT+CGG | + | tig0018619:16219-16238 | Msa1368090:intergenic | 25.0% |
| ! | AGAAACTTCAAAACTTGATA+GGG | - | tig0018619:16219-16238 | Msa1368090:intron | 25.0% |
| ! | CAACGAAATAATATACATAC+AGG | + | tig0018619:16348-16367 | Msa1368090:intergenic | 25.0% |
| ! | CTGTATGTATATTATTTCGT+TGG | - | tig0018619:16346-16365 | Msa1368090:intron | 25.0% |
| ! | GTATGTATATTATTTCGTTG+GGG | - | tig0018619:16348-16367 | Msa1368090:intron | 25.0% |
| ! | AATAAGCAAACCAAATAAAG+GGG | + | tig0018619:16404-16423 | Msa1368090:intergenic | 25.0% |
| ! | AGTGAAAAAAAATGTAGCAT+AGG | - | tig0018619:16440-16459 | Msa1368090:intron | 25.0% |
| ! | GTGAAAAAAAATGTAGCATA+GGG | - | tig0018619:16441-16460 | Msa1368090:intron | 25.0% |
| ! | TACAGGGTTGAAAAATATAA+AGG | - | tig0018619:16568-16587 | Msa1368090:intron | 25.0% |
| !!! | AGAGAACTGTTTATTTTACT+CGG | - | tig0018619:16600-16619 | Msa1368090:intron | 25.0% |
| GTATTTGATGAAAAACTTCC+TGG | - | tig0018619:9218-9237 | Msa1368090:three_prime_UTR | 30.0% | |
| ! | AGTCTGCTCTAATAATTTGT+TGG | - | tig0018619:9314-9333 | Msa1368090:three_prime_UTR | 30.0% |
| GTGTATCTTCATTGAATGTA+AGG | - | tig0018619:9386-9405 | Msa1368090:three_prime_UTR | 30.0% | |
| GTGTACAATAATCTGACAAA+TGG | - | tig0018619:9582-9601 | Msa1368090:CDS | 30.0% | |
| !!! | AACATGTTGCTGGTTTTATA+GGG | + | tig0018619:9754-9773 | Msa1368090:intergenic | 30.0% |
| AACTAAAATCAACATGTTGC+TGG | + | tig0018619:9764-9783 | Msa1368090:intergenic | 30.0% | |
| GGGACTAAAAAATACTTTAG+AGG | + | tig0018619:9787-9806 | Msa1368090:intergenic | 30.0% | |
| !!! | CTAGTTTTTTTTTTCCCTTG+AGG | - | tig0018619:9978-9997 | Msa1368090:intron | 30.0% |
| !!! | AGTTTTTTTTTTCCCTTGAG+GGG | - | tig0018619:9980-9999 | Msa1368090:intron | 30.0% |
| !! | AACTAATTTGCTGAACTCAA+CGG | + | tig0018619:10453-10472 | Msa1368090:intergenic | 30.0% |
| ACAGCTGACAAATAAGTAAT+TGG | - | tig0018619:10678-10697 | Msa1368090:CDS | 30.0% | |
| CAGCTGACAAATAAGTAATT+GGG | - | tig0018619:10679-10698 | Msa1368090:CDS | 30.0% | |
| TGACAAATAAGTAATTGGGA+TGG | - | tig0018619:10683-10702 | Msa1368090:CDS | 30.0% | |
| ! | AAGGAGCATAAAACATACAT+AGG | + | tig0018619:10828-10847 | Msa1368090:intergenic | 30.0% |
| TCAAATAGAGATATAGGGAA+AGG | + | tig0018619:10847-10866 | Msa1368090:intergenic | 30.0% | |
| TTGTCTAAATAATGTTAGGG+AGG | - | tig0018619:10898-10917 | Msa1368090:intron | 30.0% | |
| ATTGTCACACTGTTGAATTA+AGG | - | tig0018619:11050-11069 | Msa1368090:intron | 30.0% | |
| !! | TTATTGTTTTATGTGTGTGC+TGG | - | tig0018619:11123-11142 | Msa1368090:intron | 30.0% |
| AGATTCTATGCTTCCTTTAA+AGG | + | tig0018619:11405-11424 | Msa1368090:intergenic | 30.0% | |
| ACAAAAGATTGTCGCAAAAA+TGG | + | tig0018619:11452-11471 | Msa1368090:intergenic | 30.0% | |
| ACTGTAAACCTAAAAGAAGA+GGG | + | tig0018619:11476-11495 | Msa1368090:intergenic | 30.0% | |
| TCCTTTCCTAAAACATGTAT+TGG | - | tig0018619:11555-11574 | Msa1368090:intron | 30.0% | |
| ! | CTATAGCCAATACATGTTTT+AGG | + | tig0018619:11564-11583 | Msa1368090:intergenic | 30.0% |
| TCAAAGCAGATGAAAAATCT+TGG | - | tig0018619:11589-11608 | Msa1368090:CDS | 30.0% | |
| ! | CCTAAAGCAGGTAAATTTTA+AGG | + | tig0018619:11625-11644 | Msa1368090:intergenic | 30.0% |
| CCTTAAAATTTACCTGCTTT+AGG | - | tig0018619:11622-11641 | Msa1368090:CDS | 30.0% | |
| TCAATTTAGGAAATACCACT+AGG | + | tig0018619:11718-11737 | Msa1368090:intergenic | 30.0% | |
| TAATGTTAATGCTAGGATTG+TGG | + | tig0018619:11799-11818 | Msa1368090:intergenic | 30.0% | |
| TAGCTGAACCAAAATATTTG+AGG | + | tig0018619:11984-12003 | Msa1368090:intergenic | 30.0% | |
| AAAAATAACTGACCTGTACT+TGG | + | tig0018619:12284-12303 | Msa1368090:intergenic | 30.0% | |
| !! | GATTTATCTGAGGCTATTTT+TGG | - | tig0018619:12396-12415 | Msa1368090:CDS | 30.0% |
| GGGAAACAAATTATCTGATT+TGG | - | tig0018619:12417-12436 | Msa1368090:CDS | 30.0% | |
| ATGCGACAAAAATCATTTCT+AGG | + | tig0018619:12690-12709 | Msa1368090:intergenic | 30.0% | |
| !!! | AAGGAGTATTCCATTTTTTG+CGG | + | tig0018619:12715-12734 | Msa1368090:intergenic | 30.0% |
| CAAAAAATGGAATACTCCTT+AGG | - | tig0018619:12715-12734 | Msa1368090:CDS | 30.0% | |
| GAAGTGTATTTATAAGCCTA+AGG | + | tig0018619:12734-12753 | Msa1368090:intergenic | 30.0% | |
| !!! | ACCATTTGTTTTATTCTCAG+AGG | + | tig0018619:13414-13433 | Msa1368090:intergenic | 30.0% |
| GAATAAAACAAATGGTGAAC+TGG | - | tig0018619:13418-13437 | Msa1368090:intron | 30.0% | |
| TACAATAGTAAATACCTGAC+TGG | - | tig0018619:13599-13618 | Msa1368090:intron | 30.0% | |
| GTAGTTTAGTTAGTTACTGA+GGG | - | tig0018619:13624-13643 | Msa1368090:intron | 30.0% | |
| TCATTTCTATGCTTTCTTTG+TGG | - | tig0018619:13736-13755 | Msa1368090:intron | 30.0% | |
| CATTTCTATGCTTTCTTTGT+GGG | - | tig0018619:13737-13756 | Msa1368090:intron | 30.0% | |
| !!! | TGTCTTTATTTGTTTTGCTG+TGG | - | tig0018619:13765-13784 | Msa1368090:intron | 30.0% |
| ATTCAATGATGAAACCATGT+GGG | + | tig0018619:14021-14040 | Msa1368090:intergenic | 30.0% | |
| !! | AAAAGAGTACCTTGAAAAAG+TGG | - | tig0018619:14052-14071 | Msa1368090:intron | 30.0% |
| ! | GACTTTTCCAGATGTTTAAT+AGG | - | tig0018619:14150-14169 | Msa1368090:intron | 30.0% |
| TGTAGTACCTTCAACAAAAT+AGG | + | tig0018619:14185-14204 | Msa1368090:intergenic | 30.0% | |
| TACTACACAACATATCCTTT+AGG | - | tig0018619:14198-14217 | Msa1368090:intron | 30.0% | |
| ! | TGCATAGTTTCTAACCATTT+TGG | - | tig0018619:14240-14259 | Msa1368090:intron | 30.0% |
| AAAATATGCCAATGCCAAAA+TGG | + | tig0018619:14257-14276 | Msa1368090:intergenic | 30.0% | |
| !!! | TGGCATATTTTTAGATACTG+AGG | - | tig0018619:14266-14285 | Msa1368090:intron | 30.0% |
| CAAATCTTGAACTCAAAGAA+GGG | - | tig0018619:14365-14384 | Msa1368090:intron | 30.0% | |
| ! | TATTTCTACACGTGATTGAT+TGG | - | tig0018619:14502-14521 | Msa1368090:intron | 30.0% |
| GAGCATAATATTCTTCCTTA+GGG | - | tig0018619:14667-14686 | Msa1368090:intron | 30.0% | |
| ACATCGTTCTGTATATTTGA+TGG | + | tig0018619:14731-14750 | Msa1368090:intergenic | 30.0% | |
| TTAGTTAAATAGATAGGGGA+TGG | + | tig0018619:14765-14784 | Msa1368090:intergenic | 30.0% | |
| AAAATTAGCTGGCAACAATT+AGG | + | tig0018619:14810-14829 | Msa1368090:intergenic | 30.0% | |
| ! | TACATAAAGTGTCAAGATAG+GGG | + | tig0018619:14840-14859 | Msa1368090:intergenic | 30.0% |
| ! | GTACATAAAGTGTCAAGATA+GGG | + | tig0018619:14841-14860 | Msa1368090:intergenic | 30.0% |
| GCTAGACTTATAATACTGTT+GGG | + | tig0018619:14985-15004 | Msa1368090:intergenic | 30.0% | |
| TGCTAGACTTATAATACTGT+TGG | + | tig0018619:14986-15005 | Msa1368090:intergenic | 30.0% | |
| ATCTTTCATTTCTCTTTCGT+AGG | - | tig0018619:15032-15051 | Msa1368090:intron | 30.0% | |
| CTTCCTATTATCATTGTCAT+GGG | + | tig0018619:15328-15347 | Msa1368090:intergenic | 30.0% | |
| TCCAATATGTGTACAAAATG+CGG | + | tig0018619:15420-15439 | Msa1368090:intergenic | 30.0% | |
| !! | TACGTGATGATTTTCAAGAA+TGG | + | tig0018619:15444-15463 | Msa1368090:intergenic | 30.0% |
| AATTGGACAAATGAAGAGAA+AGG | + | tig0018619:15479-15498 | Msa1368090:intergenic | 30.0% | |
| !! | TAAAGGACTAAAAGCACTAT+AGG | + | tig0018619:15520-15539 | Msa1368090:intergenic | 30.0% |
| !! | TTTAGTTGTTTTGCACTGAT+GGG | - | tig0018619:15536-15555 | Msa1368090:intron | 30.0% |
| ! | AGGATAGATAGATATTTTCC+TGG | - | tig0018619:15670-15689 | Msa1368090:intron | 30.0% |
| ! | GGATAGATAGATATTTTCCT+GGG | - | tig0018619:15671-15690 | Msa1368090:intron | 30.0% |
| ! | GATAGATAGATATTTTCCTG+GGG | - | tig0018619:15672-15691 | Msa1368090:intron | 30.0% |
| ! | ATAGATAGATATTTTCCTGG+GGG | - | tig0018619:15673-15692 | Msa1368090:intron | 30.0% |
| ATCACATAACAAAGATCTCT+AGG | + | tig0018619:15744-15763 | Msa1368090:intergenic | 30.0% | |
| !!! | ATCAAGTTTTGAAGTTTCTC+GGG | + | tig0018619:16218-16237 | Msa1368090:intergenic | 30.0% |
| GAGAAACTTCAAAACTTGAT+AGG | - | tig0018619:16218-16237 | Msa1368090:intron | 30.0% | |
| GAAACTTCAAAACTTGATAG+GGG | - | tig0018619:16220-16239 | Msa1368090:intron | 30.0% | |
| ATATTATTTCGTTGGGGAAA+AGG | - | tig0018619:16354-16373 | Msa1368090:intron | 30.0% | |
| ATAGAAGTTTCCCCTTTATT+TGG | - | tig0018619:16391-16410 | Msa1368090:intron | 30.0% | |
| !!! | TTTGCTTATTTTACTGCGTT+TGG | - | tig0018619:16414-16433 | Msa1368090:intron | 30.0% |
| ! | AGTTTTTCTTTACTCTTTGG+TGG | - | tig0018619:16469-16488 | Msa1368090:intron | 30.0% |
| ! | TCTTTGGTGGTTATTTAAGT+GGG | - | tig0018619:16482-16501 | Msa1368090:intron | 30.0% |
| TGAGGCCACAAAAAGTTAAA+AGG | + | tig0018619:9186-9205 | Msa1368090:intergenic | 35.0% | |
| ATTAGATCTCACACGAATTG+GGG | + | tig0018619:9673-9692 | Msa1368090:intergenic | 35.0% | |
| CATTAGATCTCACACGAATT+GGG | + | tig0018619:9674-9693 | Msa1368090:intergenic | 35.0% | |
| ACATTAGATCTCACACGAAT+TGG | + | tig0018619:9675-9694 | Msa1368090:intergenic | 35.0% | |
| !!! | ACATGTTGCTGGTTTTATAG+GGG | + | tig0018619:9753-9772 | Msa1368090:intergenic | 35.0% |
| !!! | CAACATGTTGCTGGTTTTAT+AGG | + | tig0018619:9755-9774 | Msa1368090:intergenic | 35.0% |
| !!! | GAGTTGTGTGTTTTTTGTCT+AGG | - | tig0018619:10019-10038 | Msa1368090:intron | 35.0% |
| ACACTATTGAGTTCAAGTGT+TGG | + | tig0018619:10135-10154 | Msa1368090:intergenic | 35.0% | |
| AGATGGTTGTTAAACATCTG+AGG | + | tig0018619:10322-10341 | Msa1368090:intergenic | 35.0% | |
| CATGTTTCACATACAGAAGA+TGG | + | tig0018619:10339-10358 | Msa1368090:intergenic | 35.0% | |
| GTTGAGTTCAGCAAATTAGT+TGG | - | tig0018619:10452-10471 | Msa1368090:CDS | 35.0% | |
| !!! | ATTGTTTTTGTTACCCAGCA+TGG | - | tig0018619:10563-10582 | Msa1368090:CDS | 35.0% |
| CAAGAAAATGCTTGTCTTGT+TGG | - | tig0018619:10792-10811 | Msa1368090:intron | 35.0% | |
| ! | AAATGCTTGTCTTGTTGGAT+TGG | - | tig0018619:10797-10816 | Msa1368090:intron | 35.0% |
| AAAATAGCGTTCTACTTGGT+CGG | + | tig0018619:11356-11375 | Msa1368090:intergenic | 35.0% | |
| TTCCAAAATAGCGTTCTACT+TGG | + | tig0018619:11360-11379 | Msa1368090:intergenic | 35.0% | |
| ! | CTTTTGTTCCCTCTTCTTTT+AGG | - | tig0018619:11465-11484 | Msa1368090:CDS | 35.0% |
| GACTGTAAACCTAAAAGAAG+AGG | + | tig0018619:11477-11496 | Msa1368090:intergenic | 35.0% | |
| !!! | GCCAATACATGTTTTAGGAA+AGG | + | tig0018619:11559-11578 | Msa1368090:intergenic | 35.0% |
| !! | TTTTTCAATGAGGCCTCTAA+AGG | + | tig0018619:11687-11706 | Msa1368090:intergenic | 35.0% |
| GGATTAAGAAGGCTCAATTT+AGG | + | tig0018619:11731-11750 | Msa1368090:intergenic | 35.0% | |
| CAAGACACCTTTAATGTGAT+CGG | + | tig0018619:11774-11793 | Msa1368090:intergenic | 35.0% | |
| AGACGCATAATGTTAATGCT+AGG | + | tig0018619:11806-11825 | Msa1368090:intergenic | 35.0% | |
| AAACTGATTATGCCAAGTAC+AGG | - | tig0018619:12269-12288 | Msa1368090:intron | 35.0% | |
| ! | AATTATGGTTTGCAGTGCTA+TGG | - | tig0018619:12336-12355 | Msa1368090:CDS | 35.0% |
| AAATGGCATGGATTTATCTG+AGG | - | tig0018619:12386-12405 | Msa1368090:CDS | 35.0% | |
| GGTCATCTTAAAACCACATA+AGG | - | tig0018619:12440-12459 | Msa1368090:CDS | 35.0% | |
| ! | GATGAAAAAAGAGCCTTATG+TGG | + | tig0018619:12456-12475 | Msa1368090:intergenic | 35.0% |
| GATTAGCATCTATGTCTGTT+GGG | - | tig0018619:12775-12794 | Msa1368090:CDS | 35.0% | |
| ATTAGCATCTATGTCTGTTG+GGG | - | tig0018619:12776-12795 | Msa1368090:CDS | 35.0% | |
| !!! | GATCCTACACATCCTTTTTT+CGG | - | tig0018619:12849-12868 | Msa1368090:CDS | 35.0% |
| GTCAGATTCTAACTACCAAA+TGG | - | tig0018619:12986-13005 | Msa1368090:CDS | 35.0% | |
| ATTGAAAGAGAGAGAAAACG+TGG | - | tig0018619:13109-13128 | Msa1368090:CDS | 35.0% | |
| ! | GCCTCTGAGAATAAAACAAA+TGG | - | tig0018619:13410-13429 | Msa1368090:intron | 35.0% |
| ACTGTCATCAGAATTGTAAC+AGG | + | tig0018619:13531-13550 | Msa1368090:intergenic | 35.0% | |
| AATAGTAAATACCTGACTGG+AGG | - | tig0018619:13602-13621 | Msa1368090:intron | 35.0% | |
| GGTAGTTTAGTTAGTTACTG+AGG | - | tig0018619:13623-13642 | Msa1368090:intron | 35.0% | |
| !! | TTTTGCTGTGGACGTTTTTA+TGG | - | tig0018619:13777-13796 | Msa1368090:intron | 35.0% |
| CCAAAAGTCCCTAATTTCTT+GGG | + | tig0018619:13879-13898 | Msa1368090:intergenic | 35.0% | |
| ACCAAAAGTCCCTAATTTCT+TGG | + | tig0018619:13880-13899 | Msa1368090:intergenic | 35.0% | |
| CATTCAATGATGAAACCATG+TGG | + | tig0018619:14022-14041 | Msa1368090:intergenic | 35.0% | |
| GTTCTACCCTATTAAACATC+TGG | + | tig0018619:14160-14179 | Msa1368090:intergenic | 35.0% | |
| ! | AGAACCACCTATTTTGTTGA+AGG | - | tig0018619:14175-14194 | Msa1368090:intron | 35.0% |
| AGTACCTTCAACAAAATAGG+TGG | + | tig0018619:14182-14201 | Msa1368090:intergenic | 35.0% | |
| AATGGTTAGAAACTATGCAG+TGG | + | tig0018619:14239-14258 | Msa1368090:intergenic | 35.0% | |
| !! | GTTTCTAACCATTTTGGCAT+TGG | - | tig0018619:14246-14265 | Msa1368090:intron | 35.0% |
| ! | CCTTCTTTGAGTTCAAGATT+TGG | + | tig0018619:14367-14386 | Msa1368090:intergenic | 35.0% |
| CCAAATCTTGAACTCAAAGA+AGG | - | tig0018619:14364-14383 | Msa1368090:intron | 35.0% | |
| GGAGCATAATATTCTTCCTT+AGG | - | tig0018619:14666-14685 | Msa1368090:intron | 35.0% | |
| ! | GGTACATAAAGTGTCAAGAT+AGG | + | tig0018619:14842-14861 | Msa1368090:intergenic | 35.0% |
| GTAGTACTAGTGAGTAAACA+TGG | + | tig0018619:14863-14882 | Msa1368090:intergenic | 35.0% | |
| AGTTGTCATGTAGTAACTAC+AGG | - | tig0018619:14917-14936 | Msa1368090:intron | 35.0% | |
| GTTGTCATGTAGTAACTACA+GGG | - | tig0018619:14918-14937 | Msa1368090:intron | 35.0% | |
| ! | ATAAGTTGAACAATGCGTTC+AGG | + | tig0018619:15059-15078 | Msa1368090:intergenic | 35.0% |
| TGTCTATTTGAACCTTCTTG+AGG | - | tig0018619:15254-15273 | Msa1368090:CDS | 35.0% | |
| TAGCCCATGACAATGATAAT+AGG | - | tig0018619:15322-15341 | Msa1368090:intron | 35.0% | |
| CCTTCCTATTATCATTGTCA+TGG | + | tig0018619:15329-15348 | Msa1368090:intergenic | 35.0% | |
| CCATGACAATGATAATAGGA+AGG | - | tig0018619:15326-15345 | Msa1368090:intron | 35.0% | |
| CATCAGTGCAAAACAACTAA+AGG | + | tig0018619:15537-15556 | Msa1368090:intergenic | 35.0% | |
| !! | CTTTAGTTGTTTTGCACTGA+TGG | - | tig0018619:15535-15554 | Msa1368090:intron | 35.0% |
| !! | GAAATGGATTACAAGTGAGA+AGG | - | tig0018619:15650-15669 | Msa1368090:intron | 35.0% |
| ! | TAGATAGATATTTTCCTGGG+GGG | - | tig0018619:15674-15693 | Msa1368090:intron | 35.0% |
| CATATTTCAGAAAATCTGCC+CGG | - | tig0018619:15858-15877 | Msa1368090:intron | 35.0% | |
| AATACCACTTTGGCTGTTAA+TGG | - | tig0018619:15884-15903 | Msa1368090:intron | 35.0% | |
| TAATCCATTAACAGCCAAAG+TGG | + | tig0018619:15891-15910 | Msa1368090:intergenic | 35.0% | |
| ATCATCAAGATGCTATAGCT+CGG | - | tig0018619:15936-15955 | Msa1368090:intron | 35.0% | |
| ! | GGTTGGTACTAAAGTTTATC+AGG | - | tig0018619:16016-16035 | Msa1368090:intron | 35.0% |
| TATCCCAAATCCTGTATGAA+TGG | - | tig0018619:16060-16079 | Msa1368090:intron | 35.0% | |
| GTTCCATTCATACAGGATTT+GGG | + | tig0018619:16066-16085 | Msa1368090:intergenic | 35.0% | |
| TGTTCCATTCATACAGGATT+TGG | + | tig0018619:16067-16086 | Msa1368090:intergenic | 35.0% | |
| CATGCAAGTTTGTGTTTGAA+CGG | - | tig0018619:16085-16104 | Msa1368090:intron | 35.0% | |
| TTATCTCAAAATGTTCTGGC+AGG | - | tig0018619:16139-16158 | Msa1368090:intron | 35.0% | |
| TTCTCCACAATCAGTTTCTT+GGG | + | tig0018619:16188-16207 | Msa1368090:intergenic | 35.0% | |
| ! | CTCTTTGGTGGTTATTTAAG+TGG | - | tig0018619:16481-16500 | Msa1368090:intron | 35.0% |
| !!! | TGCTCAATGGCCTTTATTTT+TGG | - | tig0018619:16519-16538 | Msa1368090:CDS | 35.0% |
| ACATACCTGGCCAAAAATAA+AGG | + | tig0018619:16532-16551 | Msa1368090:intergenic | 35.0% | |
| !! | TGTGGCCTCATTTTTCTATC+AGG | - | tig0018619:9196-9215 | Msa1368090:intron | 40.0% |
| GATAGGTGTATGTTATGCTG+AGG | + | tig0018619:9288-9307 | Msa1368090:intergenic | 40.0% | |
| TAGAGCAGACTACATGAGAT+AGG | + | tig0018619:9305-9324 | Msa1368090:intergenic | 40.0% | |
| CATGTACTAAACCATACCCA+TGG | + | tig0018619:9531-9550 | Msa1368090:intergenic | 40.0% | |
| CATGGGTATGGTTTAGTACA+TGG | - | tig0018619:9529-9548 | Msa1368090:CDS | 40.0% | |
| TGAGGCATACATCACATCTT+TGG | - | tig0018619:9560-9579 | Msa1368090:CDS | 40.0% | |
| ATCTGACAAATGGAAGAGAG+TGG | - | tig0018619:9592-9611 | Msa1368090:intron | 40.0% | |
| AAATGGAAGAGAGTGGTAGA+GGG | - | tig0018619:9599-9618 | Msa1368090:intron | 40.0% | |
| CACGAATTGGGGACAATATA+TGG | + | tig0018619:9662-9681 | Msa1368090:intergenic | 40.0% | |
| ! | AGTTCCTGACAAGAGAGTAT+TGG | - | tig0018619:9824-9843 | Msa1368090:CDS | 40.0% |
| !! | GTTCCTGACAAGAGAGTATT+GGG | - | tig0018619:9825-9844 | Msa1368090:CDS | 40.0% |
| !! | TTCCTGACAAGAGAGTATTG+GGG | - | tig0018619:9826-9845 | Msa1368090:CDS | 40.0% |
| AGAATTGTTAGACCCCTCAA+GGG | + | tig0018619:9995-10014 | Msa1368090:intergenic | 40.0% | |
| ! | AACATCTGAGGCTAAAGTGA+GGG | + | tig0018619:10310-10329 | Msa1368090:intergenic | 40.0% |
| ! | AAACATCTGAGGCTAAAGTG+AGG | + | tig0018619:10311-10330 | Msa1368090:intergenic | 40.0% |
| ! | AGTTGGTTCATTAAAACCGG+AGG | - | tig0018619:10469-10488 | Msa1368090:CDS | 40.0% |
| TCTGCTTGTCAGAAACTCAT+TGG | - | tig0018619:10512-10531 | Msa1368090:CDS | 40.0% | |
| TAGAGGAAGTAAACCATGCT+GGG | + | tig0018619:10579-10598 | Msa1368090:intergenic | 40.0% | |
| TTAGAGGAAGTAAACCATGC+TGG | + | tig0018619:10580-10599 | Msa1368090:intergenic | 40.0% | |
| ACTTCTAGCAAGTCAGTTAG+AGG | + | tig0018619:10596-10615 | Msa1368090:intergenic | 40.0% | |
| ATAATGTTAGGGAGGCTCAT+TGG | - | tig0018619:10906-10925 | Msa1368090:intron | 40.0% | |
| ! | AGGCTCATTGGTCTAATTGT+TGG | - | tig0018619:10918-10937 | Msa1368090:intron | 40.0% |
| ATGACAGTGCTGTAATCTTG+AGG | - | tig0018619:10976-10995 | Msa1368090:intron | 40.0% | |
| AGCAATCTTCTGCATGATCA+AGG | - | tig0018619:11154-11173 | Msa1368090:intron | 40.0% | |
| TTCTGCATGATCAAGGTTCT+GGG | - | tig0018619:11161-11180 | Msa1368090:intron | 40.0% | |
| !! | ATGATCAAGGTTCTGGGTTT+GGG | - | tig0018619:11167-11186 | Msa1368090:intron | 40.0% |
| GCAATCTTCTTGCATGATCA+AGG | - | tig0018619:11279-11298 | Msa1368090:intron | 40.0% | |
| TTCTTGCATGATCAAGGTTC+TGG | - | tig0018619:11285-11304 | Msa1368090:intron | 40.0% | |
| TCTTGCATGATCAAGGTTCT+GGG | - | tig0018619:11286-11305 | Msa1368090:intron | 40.0% | |
| !! | TCAAGGTTCTGGGTTTGATT+TGG | - | tig0018619:11296-11315 | Msa1368090:intron | 40.0% |
| CGGTTATGCAATCAAACCAA+AGG | + | tig0018619:11336-11355 | Msa1368090:intergenic | 40.0% | |
| ! | GACCAAGTAGAACGCTATTT+TGG | - | tig0018619:11355-11374 | Msa1368090:intron | 40.0% |
| !! | GAGACAACATGCTCTAAAGT+AGG | + | tig0018619:11508-11527 | Msa1368090:intergenic | 40.0% |
| GAGGCTTTACATCAGGTATA+TGG | + | tig0018619:11648-11667 | Msa1368090:intergenic | 40.0% | |
| GACTTATGAGGCTTTACATC+AGG | + | tig0018619:11655-11674 | Msa1368090:intergenic | 40.0% | |
| !! | GGAGCAAGGATTTTTCAATG+AGG | + | tig0018619:11697-11716 | Msa1368090:intergenic | 40.0% |
| TGAAAAATCCTTGCTCCTAG+TGG | - | tig0018619:11700-11719 | Msa1368090:CDS | 40.0% | |
| !! | ACCTTTTGGGAGGATTAAGA+AGG | + | tig0018619:11742-11761 | Msa1368090:intergenic | 40.0% |
| !! | GTAAGCACCGATCACATTAA+AGG | - | tig0018619:11764-11783 | Msa1368090:CDS | 40.0% |
| CAATCCTGGATAAAAGGAGA+GGG | + | tig0018619:11885-11904 | Msa1368090:intergenic | 40.0% | |
| TCAATCCTGGATAAAAGGAG+AGG | + | tig0018619:11886-11905 | Msa1368090:intergenic | 40.0% | |
| ! | CAAATGTTTATAGCTTGCCG+TGG | - | tig0018619:12220-12239 | Msa1368090:intron | 40.0% |
| TCAAGAAATCCCACCAAAAC+AGG | + | tig0018619:12250-12269 | Msa1368090:intergenic | 40.0% | |
| ATGGTTCATCTCGCTATTGA+TGG | - | tig0018619:12630-12649 | Msa1368090:CDS | 40.0% | |
| CGATTAGCATCTATGTCTGT+TGG | - | tig0018619:12774-12793 | Msa1368090:CDS | 40.0% | |
| TTAGCATCTATGTCTGTTGG+GGG | - | tig0018619:12777-12796 | Msa1368090:CDS | 40.0% | |
| !! | TAGTTGATGGTTCGACTCAA+CGG | - | tig0018619:12808-12827 | Msa1368090:CDS | 40.0% |
| TGACCGAAAAAAGGATGTGT+AGG | + | tig0018619:12855-12874 | Msa1368090:intergenic | 40.0% | |
| !!! | TCCTTTTTTCGGTCAGAATG+AGG | - | tig0018619:12860-12879 | Msa1368090:CDS | 40.0% |
| AGCATGATCTCACTAAACTG+AGG | - | tig0018619:12904-12923 | Msa1368090:CDS | 40.0% | |
| TAGTTAGAATCTGACCTTCG+AGG | + | tig0018619:12981-13000 | Msa1368090:intergenic | 40.0% | |
| GAGGTCTATCAACATCCATT+TGG | + | tig0018619:13004-13023 | Msa1368090:intergenic | 40.0% | |
| TAGACCTCAATCAAGCAATG+CGG | - | tig0018619:13016-13035 | Msa1368090:CDS | 40.0% | |
| AGATTCAAACTCTTCTCTGG+TGG | + | tig0018619:13062-13081 | Msa1368090:intergenic | 40.0% | |
| GCAAGATTCAAACTCTTCTC+TGG | + | tig0018619:13065-13084 | Msa1368090:intergenic | 40.0% | |
| AGAGTTTGAATCTTGCATCC+AGG | - | tig0018619:13069-13088 | Msa1368090:CDS | 40.0% | |
| GAGTTTGAATCTTGCATCCA+GGG | - | tig0018619:13070-13089 | Msa1368090:CDS | 40.0% | |
| TTGACAGAAACTTCCTCGAA+CGG | - | tig0018619:13230-13249 | Msa1368090:intron | 40.0% | |
| TTCTCCAACAAGCTAAGAAG+AGG | + | tig0018619:13296-13315 | Msa1368090:intergenic | 40.0% | |
| ! | TGGTGAACTGGACTTTTTGA+TGG | - | tig0018619:13430-13449 | Msa1368090:intron | 40.0% |
| !! | TTTTTGATGGCAGAATTCGC+AGG | - | tig0018619:13443-13462 | Msa1368090:intron | 40.0% |
| TAACTAAACTACCTCCAGTC+AGG | + | tig0018619:13616-13635 | Msa1368090:intergenic | 40.0% | |
| AGATGTTTCTCAACGTGGAA+GGG | - | tig0018619:13806-13825 | Msa1368090:intron | 40.0% | |
| ! | CCCAAGAAATTAGGGACTTT+TGG | - | tig0018619:13876-13895 | Msa1368090:intron | 40.0% |
| !!! | GAAGATCTGCCACTTTTTCA+AGG | + | tig0018619:14064-14083 | Msa1368090:intergenic | 40.0% |
| AAAGTCTACTGAGCAAGCTT+TGG | + | tig0018619:14136-14155 | Msa1368090:intergenic | 40.0% | |
| AGCAATTTGGATCAGTTGAC+AGG | + | tig0018619:14303-14322 | Msa1368090:intergenic | 40.0% | |
| TGTATCAGAGATACATCACG+AGG | - | tig0018619:14393-14412 | Msa1368090:intron | 40.0% | |
| TACACGTGATTGATTGGTAG+TGG | - | tig0018619:14508-14527 | Msa1368090:intron | 40.0% | |
| !! | ATTGATTGGTAGTGGACTAG+TGG | - | tig0018619:14516-14535 | Msa1368090:intron | 40.0% |
| ! | TTTGATGGCATGTGTGTGAA+AGG | + | tig0018619:14716-14735 | Msa1368090:intergenic | 40.0% |
| ATAGATAGGGGATGGAAAGA+TGG | + | tig0018619:14757-14776 | Msa1368090:intergenic | 40.0% | |
| TCTAGCATGTTCTAGCATTG+CGG | - | tig0018619:14999-15018 | Msa1368090:CDS | 40.0% | |
| CAAGATAAATAAGCGGAGAC+AGG | - | tig0018619:15080-15099 | Msa1368090:intron | 40.0% | |
| ! | GTGGGGAATGATTCCATTTT+CGG | + | tig0018619:15115-15134 | Msa1368090:intergenic | 40.0% |
| TTGATGTGATGAACTGCATC+AGG | + | tig0018619:15137-15156 | Msa1368090:intergenic | 40.0% | |
| TCATGCATCTCGTAACTCAA+GGG | - | tig0018619:15203-15222 | Msa1368090:CDS | 40.0% | |
| TAACTCAAGGGAGCAGTTAA+GGG | - | tig0018619:15215-15234 | Msa1368090:CDS | 40.0% | |
| ! | ACCTTCTTGAGGATGAGTTT+TGG | - | tig0018619:15265-15284 | Msa1368090:CDS | 40.0% |
| ACCAAAACTCATCCTCAAGA+AGG | + | tig0018619:15269-15288 | Msa1368090:intergenic | 40.0% | |
| ! | GCCGCATTTTGTACACATAT+TGG | - | tig0018619:15416-15435 | Msa1368090:intron | 40.0% |
| ! | AGATAGATATTTTCCTGGGG+GGG | - | tig0018619:15675-15694 | Msa1368090:intron | 40.0% |
| !!! | CGGGCAGATTTTCTGAAATA+TGG | + | tig0018619:15860-15879 | Msa1368090:intergenic | 40.0% |
| TAACTCCATTACTCGTTGCA+AGG | - | tig0018619:15909-15928 | Msa1368090:intron | 40.0% | |
| TAGCTCGGCTTAATTTACTC+AGG | - | tig0018619:15951-15970 | Msa1368090:intron | 40.0% | |
| CTTGCATGTTCCATTCATAC+AGG | + | tig0018619:16073-16092 | Msa1368090:intergenic | 40.0% | |
| GTTCTCCACAATCAGTTTCT+TGG | + | tig0018619:16189-16208 | Msa1368090:intergenic | 40.0% | |
| !! | TCAAGTGTTGGTCAAACAGA+TGG | - | tig0018619:16256-16275 | Msa1368090:intron | 40.0% |
| ! | TTGGTGGTTATTTAAGTGGG+TGG | - | tig0018619:16485-16504 | Msa1368090:intron | 40.0% |
| ! | GGCTGATTTCTTATGCTCAA+TGG | - | tig0018619:16506-16525 | Msa1368090:intron | 40.0% |
| !!! | AATGGCCTTTATTTTTGGCC+AGG | - | tig0018619:16524-16543 | Msa1368090:CDS | 40.0% |
| AGAGGAAAAAGGTTCTCTCC+AGG | + | tig0018619:9239-9258 | Msa1368090:intergenic | 45.0% | |
| ! | AGAGAACCTTTTTCCTCTGC+AGG | - | tig0018619:9241-9260 | Msa1368090:three_prime_UTR | 45.0% |
| TTGGTACCTGCAGAGGAAAA+AGG | + | tig0018619:9250-9269 | Msa1368090:intergenic | 45.0% | |
| ! | TTTTTCCTCTGCAGGTACCA+AGG | - | tig0018619:9249-9268 | Msa1368090:three_prime_UTR | 45.0% |
| TATGCTGAGGACAGAGGAAA+AGG | + | tig0018619:9275-9294 | Msa1368090:intergenic | 45.0% | |
| GTATGTTATGCTGAGGACAG+AGG | + | tig0018619:9281-9300 | Msa1368090:intergenic | 45.0% | |
| TAGTACATGGTCGTCTTGTG+AGG | - | tig0018619:9542-9561 | Msa1368090:CDS | 45.0% | |
| CAAATGGAAGAGAGTGGTAG+AGG | - | tig0018619:9598-9617 | Msa1368090:intron | 45.0% | |
| !! | TCCTGACAAGAGAGTATTGG+GGG | - | tig0018619:9827-9846 | Msa1368090:CDS | 45.0% |
| CAGAATTGTTAGACCCCTCA+AGG | + | tig0018619:9996-10015 | Msa1368090:intergenic | 45.0% | |
| ! | ACATCTGAGGCTAAAGTGAG+GGG | + | tig0018619:10309-10328 | Msa1368090:intergenic | 45.0% |
| CTCAACGGCCTACAATGTAA+TGG | + | tig0018619:10438-10457 | Msa1368090:intergenic | 45.0% | |
| ATCACGTCTTCTGATTCCTC+CGG | + | tig0018619:10488-10507 | Msa1368090:intergenic | 45.0% | |
| ! | GGACAGCATACACGTGTTTT+AGG | + | tig0018619:10620-10639 | Msa1368090:intergenic | 45.0% |
| CTTCTGCATGATCAAGGTTC+TGG | - | tig0018619:11160-11179 | Msa1368090:intron | 45.0% | |
| !! | CATGATCAAGGTTCTGGGTT+TGG | - | tig0018619:11166-11185 | Msa1368090:intron | 45.0% |
| !! | GGTTCTGGGTTTGGGAATTA+AGG | - | tig0018619:11175-11194 | Msa1368090:intron | 45.0% |
| !! | AGGTTCTGGGTTTGATTTGG+TGG | - | tig0018619:11299-11318 | Msa1368090:intron | 45.0% |
| !! | GGTTCTGGGTTTGATTTGGT+GGG | - | tig0018619:11300-11319 | Msa1368090:intron | 45.0% |
| GGTGGGTCAAATTGTACCTT+TGG | - | tig0018619:11317-11336 | Msa1368090:intron | 45.0% | |
| TCAGGTATATGGCCTAAAGC+AGG | + | tig0018619:11637-11656 | Msa1368090:intergenic | 45.0% | |
| AGGTTACGTCACGACTTATG+AGG | + | tig0018619:11667-11686 | Msa1368090:intergenic | 45.0% | |
| AGTCGTGACGTAACCTTTAG+AGG | - | tig0018619:11671-11690 | Msa1368090:CDS | 45.0% | |
| AGGAAATACCACTAGGAGCA+AGG | + | tig0018619:11711-11730 | Msa1368090:intergenic | 45.0% | |
| GCCTTCTTAATCCTCCCAAA+AGG | - | tig0018619:11738-11757 | Msa1368090:CDS | 45.0% | |
| !! | TCGGTGCTTACACACCTTTT+GGG | + | tig0018619:11755-11774 | Msa1368090:intergenic | 45.0% |
| !! | ATCGGTGCTTACACACCTTT+TGG | + | tig0018619:11756-11775 | Msa1368090:intergenic | 45.0% |
| ! | ACAACCCTCTCCTTTTATCC+AGG | - | tig0018619:11878-11897 | Msa1368090:CDS | 45.0% |
| CGGTCTCAATCCTGGATAAA+AGG | + | tig0018619:11891-11910 | Msa1368090:intergenic | 45.0% | |
| TTTATCCAGGATTGAGACCG+AGG | - | tig0018619:11891-11910 | Msa1368090:CDS | 45.0% | |
| TTTATCCTCGGTCTCAATCC+TGG | + | tig0018619:11899-11918 | Msa1368090:intergenic | 45.0% | |
| ! | TACAGCAGCTTTGTCAGTCA+AGG | - | tig0018619:12099-12118 | Msa1368090:intron | 45.0% |
| ! | TTGCCGTGGAATACCTGTTT+TGG | - | tig0018619:12234-12253 | Msa1368090:intron | 45.0% |
| CCACCAAAACAGGTATTCCA+CGG | + | tig0018619:12240-12259 | Msa1368090:intergenic | 45.0% | |
| !!! | CGTGGAATACCTGTTTTGGT+GGG | - | tig0018619:12238-12257 | Msa1368090:intron | 45.0% |
| GCTATGGTTATGCCTAGATG+TGG | - | tig0018619:12352-12371 | Msa1368090:CDS | 45.0% | |
| ATGTGGCGTTGCAACAGAAA+TGG | - | tig0018619:12369-12388 | Msa1368090:CDS | 45.0% | |
| TCTGACTCAACTTCTGTCTC+AGG | - | tig0018619:12604-12623 | Msa1368090:CDS | 45.0% | |
| CTGACTCAACTTCTGTCTCA+GGG | - | tig0018619:12605-12624 | Msa1368090:CDS | 45.0% | |
| CAACTTCTGTCTCAGGGAAA+TGG | - | tig0018619:12611-12630 | Msa1368090:CDS | 45.0% | |
| ! | ATCTCGCTATTGATGGCATG+TGG | - | tig0018619:12637-12656 | Msa1368090:CDS | 45.0% |
| TGTCGCATAGCCGCAAAAAA+TGG | - | tig0018619:12702-12721 | Msa1368090:CDS | 45.0% | |
| !!! | GGGGGTGGATTTTTAGTTGA+TGG | - | tig0018619:12795-12814 | Msa1368090:CDS | 45.0% |
| GCCTCATTCTGACCGAAAAA+AGG | + | tig0018619:12864-12883 | Msa1368090:intergenic | 45.0% | |
| GATCTCACTAAACTGAGGCA+TGG | - | tig0018619:12909-12928 | Msa1368090:CDS | 45.0% | |
| AGGAATGGAGGACGAAGAAT+GGG | + | tig0018619:12961-12980 | Msa1368090:intergenic | 45.0% | |
| AGAATCTGACCTTCGAGGAA+TGG | + | tig0018619:12976-12995 | Msa1368090:intergenic | 45.0% | |
| AGAGAGAAAACGTGGATCGT+TGG | - | tig0018619:13117-13136 | Msa1368090:CDS | 45.0% | |
| AGTTCAACATCAGCTCGAGA+AGG | + | tig0018619:13152-13171 | Msa1368090:intergenic | 45.0% | |
| GAACTCAGACAACAACGTCT+TGG | - | tig0018619:13167-13186 | Msa1368090:intron | 45.0% | |
| ATCTGTTGATGTCCTGTTGG+CGG | + | tig0018619:13198-13217 | Msa1368090:intergenic | 45.0% | |
| CCTATCTGTTGATGTCCTGT+TGG | + | tig0018619:13201-13220 | Msa1368090:intergenic | 45.0% | |
| CCAACAGGACATCAACAGAT+AGG | - | tig0018619:13198-13217 | Msa1368090:intron | 45.0% | |
| TGACAGAAACTTCCTCGAAC+GGG | - | tig0018619:13231-13250 | Msa1368090:intron | 45.0% | |
| CTACTCAGCAAGAGCAAGTT+AGG | - | tig0018619:13270-13289 | Msa1368090:intron | 45.0% | |
| !! | TAGGCCTCTTCTTAGCTTGT+TGG | - | tig0018619:13289-13308 | Msa1368090:intron | 45.0% |
| TGTGCAGATGTTTCTCAACG+TGG | - | tig0018619:13801-13820 | Msa1368090:intron | 45.0% | |
| CAGATGTTTCTCAACGTGGA+AGG | - | tig0018619:13805-13824 | Msa1368090:intron | 45.0% | |
| TCTCAACGTGGAAGGGAAAA+CGG | - | tig0018619:13813-13832 | Msa1368090:intron | 45.0% | |
| !! | TCTTTGAGACACTCTAGCAC+TGG | + | tig0018619:13850-13869 | Msa1368090:intergenic | 45.0% |
| AGAGTCGCTCCCAAGAAATT+AGG | - | tig0018619:13867-13886 | Msa1368090:intron | 45.0% | |
| GAGTCGCTCCCAAGAAATTA+GGG | - | tig0018619:13868-13887 | Msa1368090:intron | 45.0% | |
| !!! | GGGACTTTTGGTTCTAGTGA+AGG | - | tig0018619:13888-13907 | Msa1368090:intron | 45.0% |
| ATCGTATCTCAGACAGCATC+AGG | - | tig0018619:13930-13949 | Msa1368090:intron | 45.0% | |
| ACAGCATCAGGTGTATTGTC+TGG | - | tig0018619:13942-13961 | Msa1368090:intron | 45.0% | |
| ! | TCAGGTGTATTGTCTGGTTC+AGG | - | tig0018619:13948-13967 | Msa1368090:intron | 45.0% |
| ! | GGTGTTCTAAATGCTAGACC+AGG | - | tig0018619:13969-13988 | Msa1368090:intron | 45.0% |
| ATCTGGACTACTTTCCCACA+TGG | - | tig0018619:14004-14023 | Msa1368090:intron | 45.0% | |
| AGAAAATCTTCAGCGTGCTG+AGG | - | tig0018619:14324-14343 | Msa1368090:intron | 45.0% | |
| AGTGTCAAGATAGGGGAGAA+GGG | + | tig0018619:14833-14852 | Msa1368090:intergenic | 45.0% | |
| AAGTGTCAAGATAGGGGAGA+AGG | + | tig0018619:14834-14853 | Msa1368090:intergenic | 45.0% | |
| CTAGCATGTTCTAGCATTGC+GGG | - | tig0018619:15000-15019 | Msa1368090:CDS | 45.0% | |
| AAATAAGCGGAGACAGGAAC+AGG | - | tig0018619:15086-15105 | Msa1368090:intron | 45.0% | |
| TGTGATGAACTGCATCAGGT+GGG | + | tig0018619:15133-15152 | Msa1368090:intergenic | 45.0% | |
| ATGTGATGAACTGCATCAGG+TGG | + | tig0018619:15134-15153 | Msa1368090:intergenic | 45.0% | |
| GGCAATGCATATTGCTTCAG+AGG | + | tig0018619:15165-15184 | Msa1368090:intergenic | 45.0% | |
| CTCATGCATCTCGTAACTCA+AGG | - | tig0018619:15202-15221 | Msa1368090:CDS | 45.0% | |
| GTAACTCAAGGGAGCAGTTA+AGG | - | tig0018619:15214-15233 | Msa1368090:CDS | 45.0% | |
| ATGTGTACAAAATGCGGCTC+TGG | + | tig0018619:15414-15433 | Msa1368090:intergenic | 45.0% | |
| !! | CACTGATGGGTTACAGACAA+AGG | - | tig0018619:15549-15568 | Msa1368090:intron | 45.0% |
| ! | GATAGATATTTTCCTGGGGG+GGG | - | tig0018619:15676-15695 | Msa1368090:intron | 45.0% |
| ! | ATAGATATTTTCCTGGGGGG+GGG | - | tig0018619:15677-15696 | Msa1368090:intron | 45.0% |
| !! | AGCCAAAGTGGTATTGATCC+GGG | + | tig0018619:15879-15898 | Msa1368090:intergenic | 45.0% |
| !! | CAGCCAAAGTGGTATTGATC+CGG | + | tig0018619:15880-15899 | Msa1368090:intergenic | 45.0% |
| TCAAGCCTTGCAACGAGTAA+TGG | + | tig0018619:15917-15936 | Msa1368090:intergenic | 45.0% | |
| CAATCAGTTTCTTGGGCTGA+GGG | + | tig0018619:16181-16200 | Msa1368090:intergenic | 45.0% | |
| ACAATCAGTTTCTTGGGCTG+AGG | + | tig0018619:16182-16201 | Msa1368090:intergenic | 45.0% | |
| TCAGCCCAAGAAACTGATTG+TGG | - | tig0018619:16181-16200 | Msa1368090:intron | 45.0% | |
| !! | AAAATAAAAATAAAAACATT+AGG | + | tig0018619:15804-15823 | Msa1368090:intergenic | 5.0% |
| GTGTGTAGCACGGAAACAGA+GGG | + | tig0018619:9509-9528 | Msa1368090:intergenic | 50.0% | |
| TGTTTCCGTGCTACACACCA+TGG | - | tig0018619:9511-9530 | Msa1368090:CDS | 50.0% | |
| GTTTCCGTGCTACACACCAT+GGG | - | tig0018619:9512-9531 | Msa1368090:CDS | 50.0% | |
| CATACCCATGGTGTGTAGCA+CGG | + | tig0018619:9519-9538 | Msa1368090:intergenic | 50.0% | |
| TCCCCCAATACTCTCTTGTC+AGG | + | tig0018619:9831-9850 | Msa1368090:intergenic | 50.0% | |
| ! | GTGCTTACACACCTTTTGGG+AGG | + | tig0018619:11752-11771 | Msa1368090:intergenic | 50.0% |
| ACAGCAAAGCTCATGACTGC+AGG | + | tig0018619:12035-12054 | Msa1368090:intergenic | 50.0% | |
| TGCTTCCATACGAATCTCCC+GGG | + | tig0018619:12069-12088 | Msa1368090:intergenic | 50.0% | |
| CTGCTTCCATACGAATCTCC+CGG | + | tig0018619:12070-12089 | Msa1368090:intergenic | 50.0% | |
| !! | CCGTGGAATACCTGTTTTGG+TGG | - | tig0018619:12237-12256 | Msa1368090:intron | 50.0% |
| TCTGTTGCAACGCCACATCT+AGG | + | tig0018619:12367-12386 | Msa1368090:intergenic | 50.0% | |
| GCGTTGCAACAGAAATGGCA+TGG | - | tig0018619:12374-12393 | Msa1368090:CDS | 50.0% | |
| GGATCCAAGATACCAGAACG+TGG | + | tig0018619:12834-12853 | Msa1368090:intergenic | 50.0% | |
| ATGGAGGACGAAGAATGGGA+AGG | + | tig0018619:12957-12976 | Msa1368090:intergenic | 50.0% | |
| GAGGAATGGAGGACGAAGAA+TGG | + | tig0018619:12962-12981 | Msa1368090:intergenic | 50.0% | |
| ATCTGACCTTCGAGGAATGG+AGG | + | tig0018619:12973-12992 | Msa1368090:intergenic | 50.0% | |
| TGCATCCAGGGAATCTTCAG+CGG | - | tig0018619:13082-13101 | Msa1368090:CDS | 50.0% | |
| GTCTTGGTATTTCCGCCAAC+AGG | - | tig0018619:13183-13202 | Msa1368090:intron | 50.0% | |
| TGTTGCTGATAACCCGTTCG+AGG | + | tig0018619:13246-13265 | Msa1368090:intergenic | 50.0% | |
| !! | TCGAACGGGTTATCAGCAAC+AGG | - | tig0018619:13245-13264 | Msa1368090:intron | 50.0% |
| TCCAGAGAAACGTCCAGATC+GGG | + | tig0018619:13324-13343 | Msa1368090:intergenic | 50.0% | |
| GTCCAGAGAAACGTCCAGAT+CGG | + | tig0018619:13325-13344 | Msa1368090:intergenic | 50.0% | |
| ! | TCTCAGAGGCATGCAGCAAA+GGG | + | tig0018619:13400-13419 | Msa1368090:intergenic | 50.0% |
| ! | TTCTCAGAGGCATGCAGCAA+AGG | + | tig0018619:13401-13420 | Msa1368090:intergenic | 50.0% |
| !! | AAGGTGCTGCTTCCACATCT+GGG | - | tig0018619:13907-13926 | Msa1368090:intron | 50.0% |
| CTGAGATACGATCCCAGATG+TGG | + | tig0018619:13922-13941 | Msa1368090:intergenic | 50.0% | |
| CCAGATGAAGTAGCACTACC+TGG | + | tig0018619:13990-14009 | Msa1368090:intergenic | 50.0% | |
| !! | CCAGGTAGTGCTACTTCATC+TGG | - | tig0018619:13987-14006 | Msa1368090:intron | 50.0% |
| !! | TGGTAGTGGACTAGTGGTAC+TGG | - | tig0018619:14522-14541 | Msa1368090:intron | 50.0% |
| !! | AGTGGACTAGTGGTACTGGT+AGG | - | tig0018619:14526-14545 | Msa1368090:intron | 50.0% |
| TCCTTAGGGTCTCCTCTTCA+CGG | - | tig0018619:14681-14700 | Msa1368090:intron | 50.0% | |
| AGGAGATATCCTCCGTGAAG+AGG | + | tig0018619:14696-14715 | Msa1368090:intergenic | 50.0% | |
| GGGGAGAAGGGAAAATTAGC+TGG | + | tig0018619:14821-14840 | Msa1368090:intergenic | 50.0% | |
| GTGATGAACTGCATCAGGTG+GGG | + | tig0018619:15132-15151 | Msa1368090:intergenic | 50.0% | |
| ATTGCCTCTGTTGTGCGACA+TGG | - | tig0018619:15179-15198 | Msa1368090:CDS | 50.0% | |
| GTTAAGGGCTCATGGTGGTT+TGG | - | tig0018619:15230-15249 | Msa1368090:CDS | 50.0% | |
| ! | AGGTTGAACAAGCACTGCTG+AGG | - | tig0018619:15346-15365 | Msa1368090:intron | 50.0% |
| ! | TGAACAAGCACTGCTGAGGA+AGG | - | tig0018619:15350-15369 | Msa1368090:intron | 50.0% |
| ! | TAGATATTTTCCTGGGGGGG+GGG | - | tig0018619:15678-15697 | Msa1368090:intron | 50.0% |
| TGCCCGGATCAATACCACTT+TGG | - | tig0018619:15874-15893 | Msa1368090:intron | 50.0% | |
| TTGATAGGGGAACGCAGAGA+TGG | - | tig0018619:16233-16252 | Msa1368090:intron | 50.0% | |
| ACGCAGAGATGGTCAAGTGT+TGG | - | tig0018619:16244-16263 | Msa1368090:intron | 50.0% | |
| AAAGGCCTTGGTACCTGCAG+AGG | + | tig0018619:9257-9276 | Msa1368090:intergenic | 55.0% | |
| GAGGACAGAGGAAAAGGCCT+TGG | + | tig0018619:9269-9288 | Msa1368090:intergenic | 55.0% | |
| GGTGTGTAGCACGGAAACAG+AGG | + | tig0018619:9510-9529 | Msa1368090:intergenic | 55.0% | |
| CGTGCTACACACCATGGGTA+TGG | - | tig0018619:9517-9536 | Msa1368090:CDS | 55.0% | |
| AGAGAGTGGTAGAGGGCAAG+AGG | - | tig0018619:9606-9625 | Msa1368090:intron | 55.0% | |
| GCTTCCATACGAATCTCCCG+GGG | + | tig0018619:12068-12087 | Msa1368090:intergenic | 55.0% | |
| ! | CGCTATTGATGGCATGTGGC+AGG | - | tig0018619:12641-12660 | Msa1368090:CDS | 55.0% |
| GCATCTATGTCTGTTGGGGG+TGG | - | tig0018619:12780-12799 | Msa1368090:CDS | 55.0% | |
| ACGGCCACGTTCTGGTATCT+TGG | - | tig0018619:12827-12846 | Msa1368090:CDS | 55.0% | |
| CTTCGTCCTCCATTCCTCGA+AGG | - | tig0018619:12964-12983 | Msa1368090:CDS | 55.0% | |
| GCTGCCGCATTGCTTGATTG+AGG | + | tig0018619:13023-13042 | Msa1368090:intergenic | 55.0% | |
| GCATCCAGGGAATCTTCAGC+GGG | - | tig0018619:13083-13102 | Msa1368090:CDS | 55.0% | |
| TGTACCCGCTGAAGATTCCC+TGG | + | tig0018619:13090-13109 | Msa1368090:intergenic | 55.0% | |
| TTGGAGAAAGAGCCCCGATC+TGG | - | tig0018619:13308-13327 | Msa1368090:intron | 55.0% | |
| CCAGAGAAACGTCCAGATCG+GGG | + | tig0018619:13323-13342 | Msa1368090:intergenic | 55.0% | |
| !! | GAAGGTGCTGCTTCCACATC+TGG | - | tig0018619:13906-13925 | Msa1368090:intron | 55.0% |
| TCCGTGAAGAGGAGACCCTA+AGG | + | tig0018619:14685-14704 | Msa1368090:intergenic | 55.0% | |
| TTAGGGTCTCCTCTTCACGG+AGG | - | tig0018619:14684-14703 | Msa1368090:intron | 55.0% | |
| CAGGAACAGGCAGCCGAAAA+TGG | - | tig0018619:15099-15118 | Msa1368090:intron | 55.0% | |
| TGAGCCATGTCGCACAACAG+AGG | + | tig0018619:15186-15205 | Msa1368090:intergenic | 55.0% | |
| AGGGAGCAGTTAAGGGCTCA+TGG | - | tig0018619:15222-15241 | Msa1368090:CDS | 55.0% | |
| GAGCAGTTAAGGGCTCATGG+TGG | - | tig0018619:15225-15244 | Msa1368090:CDS | 55.0% | |
| ! | AGATATTTTCCTGGGGGGGG+GGG | - | tig0018619:15679-15698 | Msa1368090:intron | 55.0% |
| AGTGGTAGAGGGCAAGAGGC+AGG | - | tig0018619:9610-9629 | Msa1368090:intron | 60.0% | |
| GTGGTAGAGGGCAAGAGGCA+GGG | - | tig0018619:9611-9630 | Msa1368090:intron | 60.0% | |
| TAGAGGGCAAGAGGCAGGGA+GGG | - | tig0018619:9615-9634 | Msa1368090:intron | 60.0% | |
| TTGCTGTACCCGATCGTCCC+CGG | - | tig0018619:12048-12067 | Msa1368090:intron | 60.0% | |
| ACGAATCTCCCGGGGACGAT+CGG | + | tig0018619:12060-12079 | Msa1368090:intergenic | 60.0% | |
| TCGTCCCCGGGAGATTCGTA+TGG | - | tig0018619:12061-12080 | Msa1368090:intron | 60.0% | |
| TCGACTCAACGGCCACGTTC+TGG | - | tig0018619:12819-12838 | Msa1368090:CDS | 60.0% | |
| CCCCGATCTGGACGTTTCTC+TGG | - | tig0018619:13320-13339 | Msa1368090:intron | 60.0% | |
| !! | AATGCGGCTCTGGACAGCTC+TGG | + | tig0018619:15404-15423 | Msa1368090:intergenic | 60.0% |
| ! | GATATTTTCCTGGGGGGGGG+GGG | - | tig0018619:15680-15699 | Msa1368090:intron | 60.0% |
| ! | ATATTTTCCTGGGGGGGGGG+GGG | - | tig0018619:15681-15700 | Msa1368090:intron | 60.0% |
| GTAGAGGGCAAGAGGCAGGG+AGG | - | tig0018619:9614-9633 | Msa1368090:intron | 65.0% | |
| TGCTGTACCCGATCGTCCCC+GGG | - | tig0018619:12049-12068 | Msa1368090:intron | 65.0% | |
| CGAATCTCCCGGGGACGATC+GGG | + | tig0018619:12059-12078 | Msa1368090:intergenic | 65.0% | |
| ! | TATTTTCCTGGGGGGGGGGG+GGG | - | tig0018619:15682-15701 | Msa1368090:intron | 65.0% |
| ! | TGACTTCCCCCCCCCCCCCC+AGG | + | tig0018619:15691-15710 | Msa1368090:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018619 | gene | 9109 | 16662 | 9109 | ID=Msa1368090;Name=Msa1368090 |
| tig0018619 | mRNA | 9109 | 16662 | 9109 | ID=Msa1368090-mRNA-1;Parent=Msa1368090;Name=Msa1368090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.92|1|0.83|0.76|13|299|847 |
| tig0018619 | exon | 9109 | 9169 | 9109 | ID=Msa1368090-mRNA-1:exon:308;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 9211 | 9610 | 9211 | ID=Msa1368090-mRNA-1:exon:307;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 9789 | 9903 | 9789 | ID=Msa1368090-mRNA-1:exon:306;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 10311 | 10717 | 10311 | ID=Msa1368090-mRNA-1:exon:305;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 11357 | 11491 | 11357 | ID=Msa1368090-mRNA-1:exon:304;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 11575 | 11963 | 11575 | ID=Msa1368090-mRNA-1:exon:303;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 12307 | 13145 | 12307 | ID=Msa1368090-mRNA-1:exon:302;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 13481 | 13564 | 13481 | ID=Msa1368090-mRNA-1:exon:301;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 13651 | 13742 | 13651 | ID=Msa1368090-mRNA-1:exon:300;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 14953 | 15036 | 14953 | ID=Msa1368090-mRNA-1:exon:299;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 15143 | 15322 | 15143 | ID=Msa1368090-mRNA-1:exon:298;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 16509 | 16553 | 16509 | ID=Msa1368090-mRNA-1:exon:297;Parent=Msa1368090-mRNA-1 |
| tig0018619 | exon | 16651 | 16662 | 16651 | ID=Msa1368090-mRNA-1:exon:296;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 16651 | 16662 | 16651 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 16509 | 16553 | 16509 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 15143 | 15322 | 15143 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 14953 | 15036 | 14953 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 13651 | 13742 | 13651 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 13481 | 13564 | 13481 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 12307 | 13145 | 12307 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 11575 | 11963 | 11575 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 11357 | 11491 | 11357 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 10311 | 10717 | 10311 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 9789 | 9903 | 9789 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | CDS | 9449 | 9610 | 9449 | ID=Msa1368090-mRNA-1:cds;Parent=Msa1368090-mRNA-1 |
| tig0018619 | three_prime_UTR | 9211 | 9448 | 9211 | ID=Msa1368090-mRNA-1:three_prime_utr;Parent=Msa1368090-mRNA-1 |
| tig0018619 | three_prime_UTR | 9109 | 9169 | 9109 | ID=Msa1368090-mRNA-1:three_prime_utr;Parent=Msa1368090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
