AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1264560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264560 MtrunA17_Chr4g0073731 76.692 266 11 1 1 215 1 266 5.60e-133 374
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264560 AT2G24060.1 65.385 130 43 1 74 203 137 264 4.54e-53 173
Msa1264560 AT4G30690.1 70.690 116 32 1 84 199 143 256 1.46e-50 166
Msa1264560 AT4G30690.2 42.986 221 98 5 1 199 14 228 3.78e-45 150

Find 69 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTGCTTCAGCTTTCTT+TGG 0.232978 8_2:-68081263 None:intergenic
GGATTTGAAGGAGCTTAAAA+TGG 0.251941 8_2:+68079965 Msa1264560:CDS
GTGGTTAATGGGATTCCTTC+AGG 0.326287 8_2:-68081484 None:intergenic
TTAGAATACGTACCTAAGTT+TGG 0.359504 8_2:-68077873 None:intergenic
CACAAGGCTGATTGATCATC+TGG 0.369737 8_2:+68081541 Msa1264560:three_prime_UTR
TTGTCGAAGAGAGTGGTTAA+TGG 0.371981 8_2:-68081496 None:intergenic
TCATCGTCAGCATCTTTGTT+AGG 0.382465 8_2:-68077833 None:intergenic
TTCTAGAAGTTTAATTATAG+AGG 0.385592 8_2:+68081435 Msa1264560:three_prime_UTR
CCAATGAAAATTTGAGGATT+GGG 0.386900 8_2:-68077502 None:intergenic
TGTCGAAGAGAGTGGTTAAT+GGG 0.393354 8_2:-68081495 None:intergenic
ACCAATGAAAATTTGAGGAT+TGG 0.404550 8_2:-68077503 None:intergenic
TGCGAGGCTTTGAGTTTAAC+GGG 0.413405 8_2:-68077662 None:intergenic
GATTTGAAGGAGCTTAAAAT+GGG 0.419531 8_2:+68079966 Msa1264560:CDS
GAACAACCAATGAAAATTTG+AGG 0.421285 8_2:-68077508 None:intergenic
ATGCGAGGCTTTGAGTTTAA+CGG 0.431987 8_2:-68077663 None:intergenic
AAGGTCATAGTAAACCTTAA+AGG 0.442796 8_2:+68080794 Msa1264560:CDS
GCTTTCTTTGGTGTTTCTTG+AGG 0.453019 8_2:-68081251 None:intergenic
AACGGGAACGACGGTGGTGG+TGG 0.470380 8_2:-68077645 None:intergenic
TACGGGATTCTAGTTGTAGA+AGG 0.471523 8_2:+68081324 Msa1264560:three_prime_UTR
GTGTAAACCAACGCCATGGC+TGG 0.473725 8_2:+68077617 Msa1264560:exon
CGTCCTTCCGCCTACGGTGG+CGG 0.475627 8_2:+68077788 Msa1264560:CDS
AACCTCCGTCCTTCCGCCTA+CGG 0.484697 8_2:+68077782 Msa1264560:CDS
AGGGAGAAGATTGAAAATTG+AGG 0.492839 8_2:-68077718 None:intergenic
GTGGGAAGGAAGAGTGAATG+AGG 0.494919 8_2:-68077738 None:intergenic
AGCTAGTCGGATGGATTTGA+AGG 0.496946 8_2:+68079953 Msa1264560:intron
GGGAGAAGATTGAAAATTGA+GGG 0.497096 8_2:-68077717 None:intergenic
GCGTTGGTTTACACTTTCCA+CGG 0.503109 8_2:-68077608 None:intergenic
GATTGAAAATTGAGGGAATG+AGG 0.509324 8_2:-68077710 None:intergenic
CCTTCCGCCTACGGTGGCGG+TGG 0.531353 8_2:+68077791 Msa1264560:CDS
TGGGAAGGAAGAGTGAATGA+GGG 0.537972 8_2:-68077737 None:intergenic
GAAAATTTGAGGATTGGGCC+TGG 0.541739 8_2:-68077497 None:intergenic
GATCAGCAGAAGAAAAGTGC+TGG 0.542127 8_2:+68079828 Msa1264560:CDS
CGCCACCGTAGGCGGAAGGA+CGG 0.545325 8_2:-68077787 None:intergenic
TCGTCAGCATCTTTGTTAGG+AGG 0.545365 8_2:-68077830 None:intergenic
TAACTGATATTGCTCTGTTG+TGG 0.546293 8_2:+68081356 Msa1264560:three_prime_UTR
TCCCACGCAACCGTTCGTTA+CGG 0.549673 8_2:+68077755 Msa1264560:CDS
CATAGTTGAAAACTTCCATA+CGG 0.554407 8_2:+68081306 Msa1264560:exon
AGCTGAAGCAGATGAAGTCT+CGG 0.555824 8_2:+68081271 Msa1264560:CDS
TCAGCATCTTTGTTAGGAGG+AGG 0.559988 8_2:-68077827 None:intergenic
CTCTCGACCTCTCCAAACTT+AGG 0.560626 8_2:+68077861 Msa1264560:CDS
TAACGAACGGTTGCGTGGGA+AGG 0.567710 8_2:-68077752 None:intergenic
TTTGTGGGAATTTAATAACC+AGG 0.573535 8_2:+68077479 None:intergenic
GAAGTTGCCACCGCCACCGT+AGG 0.573642 8_2:-68077798 None:intergenic
ACCGTAACGAACGGTTGCGT+GGG 0.576730 8_2:-68077756 None:intergenic
GTTGCCACCGCCACCGTAGG+CGG 0.587312 8_2:-68077795 None:intergenic
ATTGAAACGCTGAAACCTGA+AGG 0.588692 8_2:+68081469 Msa1264560:three_prime_UTR
ATAGTTGAAAACTTCCATAC+GGG 0.590817 8_2:+68081307 Msa1264560:exon
ACAGAGCAATATCAGTTACA+AGG 0.592241 8_2:-68081351 None:intergenic
TCATGTGCAGCTTGCAACAG+AGG 0.599439 8_2:+68081160 Msa1264560:intron
GAATACATTGTCGAAGAGAG+TGG 0.599815 8_2:-68081503 None:intergenic
CATAGAAGAACAACAGCACA+AGG 0.600188 8_2:+68081525 Msa1264560:three_prime_UTR
TTTCAGCGTTTCAATAGACA+AGG 0.602016 8_2:-68081461 None:intergenic
GGTAATGCCAGCCATGGCGT+TGG 0.603488 8_2:-68077624 None:intergenic
GAGTTTAACGGGAACGACGG+TGG 0.603870 8_2:-68077651 None:intergenic
CCACCGCCACCGTAGGCGGA+AGG 0.608125 8_2:-68077791 None:intergenic
CACCGTAGGCGGAAGGACGG+AGG 0.610477 8_2:-68077784 None:intergenic
TTTAACGGGAACGACGGTGG+TGG 0.617395 8_2:-68077648 None:intergenic
GGTGGTGGTAATGCCAGCCA+TGG 0.622734 8_2:-68077630 None:intergenic
TCTACAACTAGAATCCCGTA+TGG 0.633129 8_2:-68081321 None:intergenic
TTTATTAGAGAATAGATGCG+AGG 0.635663 8_2:-68077678 None:intergenic
TGTGCAGCTTGCAACAGAGG+AGG 0.648795 8_2:+68081163 Msa1264560:intron
ATACTTACTAGAACATGCAT+CGG 0.651186 8_2:+68077578 Msa1264560:five_prime_UTR
GAAAGTGTAAACCAACGCCA+TGG 0.651302 8_2:+68077613 Msa1264560:exon
GAGGTTAACACCGTAACGAA+CGG 0.655700 8_2:-68077765 None:intergenic
TTTGAGTTTAACGGGAACGA+CGG 0.669820 8_2:-68077654 None:intergenic
CTGTACGTTTGAAAGCTGCA+CGG 0.670288 8_2:+68080651 Msa1264560:CDS
ATTTGAAGGAGCTTAAAATG+GGG 0.674873 8_2:+68079967 Msa1264560:CDS
ATACGTACCTAAGTTTGGAG+AGG 0.687696 8_2:-68077868 None:intergenic
CATGCATCGGAGTTGAACCG+TGG 0.702183 8_2:+68077591 Msa1264560:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTAAATGATATAA+AGG - chr8_2:68079884-68079903 None:intergenic 10.0%
!! AATGATTATATTATATGGTT+TGG + chr8_2:68078906-68078925 Msa1264560:intron 15.0%
!! TGTAAAAGAAGAAAAATATA+AGG - chr8_2:68079773-68079792 None:intergenic 15.0%
!!! AGAAATATTGATGATTAAAT+TGG - chr8_2:68080115-68080134 None:intergenic 15.0%
!!! TAATCATCAATATTTCTATA+AGG + chr8_2:68080118-68080137 Msa1264560:intron 15.0%
!!! AATCATCAATATTTCTATAA+GGG + chr8_2:68080119-68080138 Msa1264560:intron 15.0%
!! AAAAATTAACAAGTAAAGAT+AGG - chr8_2:68080227-68080246 None:intergenic 15.0%
!!! ATTTTGTTTATTGTTTTGTT+TGG + chr8_2:68080589-68080608 Msa1264560:intron 15.0%
!! GTAAATGATTTAAATAGAAA+AGG - chr8_2:68081034-68081053 None:intergenic 15.0%
!!! ATATCTTATTTTATTATCAC+TGG + chr8_2:68081087-68081106 Msa1264560:intron 15.0%
!! TTTAGATATAAAATACACTT+AGG - chr8_2:68081131-68081150 None:intergenic 15.0%
!! AATTCGAAATAGAAATGAAA+TGG - chr8_2:68077912-68077931 None:intergenic 20.0%
!!! TTACTTTCGATTTTTGAAAT+AGG + chr8_2:68077948-68077967 Msa1264560:intron 20.0%
!! TAATTCATTATTCTAACAAC+AGG - chr8_2:68078524-68078543 None:intergenic 20.0%
!! TTGTTAGAATAATGAATTAC+AGG + chr8_2:68078525-68078544 Msa1264560:intron 20.0%
!! TGTAAAGTTTAATATGTTTC+AGG - chr8_2:68078567-68078586 None:intergenic 20.0%
!! ATATAGTATAAAAAAACCAG+TGG + chr8_2:68078666-68078685 Msa1264560:intron 20.0%
!!! AAAGCAATGCTTTTAAAAAT+CGG + chr8_2:68078702-68078721 Msa1264560:intron 20.0%
!!! ATTATATTATATGGTTTGGA+TGG + chr8_2:68078910-68078929 Msa1264560:intron 20.0%
!! TATACCAATGTTATGAAAAT+TGG - chr8_2:68078994-68079013 None:intergenic 20.0%
!!! ATTTTCATAACATTGGTATA+AGG + chr8_2:68078994-68079013 Msa1264560:intron 20.0%
!!! TTATTTCGAATGTTCATTTT+TGG + chr8_2:68079042-68079061 Msa1264560:intron 20.0%
!!! AAATGGATAACTCAATTTTT+AGG + chr8_2:68079250-68079269 Msa1264560:intron 20.0%
!!! AATGGATAACTCAATTTTTA+GGG + chr8_2:68079251-68079270 Msa1264560:intron 20.0%
!!! TGTTATTTTTGTAAGTCTTT+AGG + chr8_2:68079277-68079296 Msa1264560:intron 20.0%
!! ACCATCTTAATCTTAAAAAA+CGG - chr8_2:68079313-68079332 None:intergenic 20.0%
!!! ATTTACAATTTTACAGAACT+CGG + chr8_2:68079891-68079910 Msa1264560:intron 20.0%
!!! TTTTCTATGAAACATAAGAA+AGG - chr8_2:68080019-68080038 None:intergenic 20.0%
!!! TATTTTATATCTAAACCACA+CGG + chr8_2:68081136-68081155 Msa1264560:intron 20.0%
!!! TTCTAGAAGTTTAATTATAG+AGG + chr8_2:68081435-68081454 Msa1264560:three_prime_UTR 20.0%
!! AAAAATGAAATGAAATTCGA+AGG - chr8_2:68081609-68081628 None:intergenic 20.0%
!!! GCTGTTTTAATAAGATATCT+TGG + chr8_2:68078249-68078268 Msa1264560:intron 25.0%
! AAGTTTAATATGTTTCAGGA+CGG - chr8_2:68078563-68078582 None:intergenic 25.0%
! GATAGACAATTATCCAAATT+TGG + chr8_2:68079103-68079122 Msa1264560:intron 25.0%
! TGTCTTGAATGTTGTTAATT+TGG + chr8_2:68079491-68079510 Msa1264560:intron 25.0%
!! TTGAATGTTGTTAATTTGGA+TGG + chr8_2:68079495-68079514 Msa1264560:intron 25.0%
!!! TCATTCCGATTTTGTTTTTT+CGG + chr8_2:68079540-68079559 Msa1264560:intron 25.0%
! AGCTACATTAAAAAGATCAT+TGG - chr8_2:68079937-68079956 None:intergenic 25.0%
!! ATCTTTTTAATGTAGCTAGT+CGG + chr8_2:68079940-68079959 Msa1264560:intron 25.0%
! ATATCTGAATTCTTGTTCTT+TGG + chr8_2:68080054-68080073 Msa1264560:intron 25.0%
! TTCTGTCAAGATATAAATGA+TGG - chr8_2:68080422-68080441 None:intergenic 25.0%
! AGATATAAAATACACTTAGG+CGG - chr8_2:68081128-68081147 None:intergenic 25.0%
!! ATTTTATATCTAAACCACAC+GGG + chr8_2:68081137-68081156 Msa1264560:intron 25.0%
CCAATGAAAATTTGAGGATT+GGG - chr8_2:68077505-68077524 None:intergenic 30.0%
ACCAATGAAAATTTGAGGAT+TGG - chr8_2:68077506-68077525 None:intergenic 30.0%
GAACAACCAATGAAAATTTG+AGG - chr8_2:68077511-68077530 None:intergenic 30.0%
ATACTTACTAGAACATGCAT+CGG + chr8_2:68077578-68077597 Msa1264560:five_prime_UTR 30.0%
TTTATTAGAGAATAGATGCG+AGG - chr8_2:68077681-68077700 None:intergenic 30.0%
TTAGAATACGTACCTAAGTT+TGG - chr8_2:68077876-68077895 None:intergenic 30.0%
TATTGATCAGAGTCAGAATA+TGG + chr8_2:68077988-68078007 Msa1264560:intron 30.0%
TCTATCATATAGGCATGATT+TGG + chr8_2:68078094-68078113 Msa1264560:intron 30.0%
!! TGAACTGATTTGAAACAGTT+GGG - chr8_2:68078367-68078386 None:intergenic 30.0%
CATAAGTAATATGTGCTCAA+AGG - chr8_2:68078423-68078442 None:intergenic 30.0%
TTCATTATTCTAACAACAGG+AGG - chr8_2:68078521-68078540 None:intergenic 30.0%
ATAAAAAAACCAGTGGTTGA+TGG + chr8_2:68078673-68078692 Msa1264560:intron 30.0%
CAATGTTATGAAAATTGGAC+CGG - chr8_2:68078989-68079008 None:intergenic 30.0%
TTCATAACATTGGTATAAGG+TGG + chr8_2:68078997-68079016 Msa1264560:intron 30.0%
!! GTTCCAATTTTAATGTGACA+GGG + chr8_2:68079168-68079187 Msa1264560:intron 30.0%
!! TTCCAATTTTAATGTGACAG+GGG + chr8_2:68079169-68079188 Msa1264560:intron 30.0%
TAAATATCTGCAGTGTGAAA+TGG + chr8_2:68079233-68079252 Msa1264560:intron 30.0%
!!! GCCGTTTTTTAAGATTAAGA+TGG + chr8_2:68079309-68079328 Msa1264560:intron 30.0%
TAAGAGCAAGAAAAAAAGAC+AGG - chr8_2:68079420-68079439 None:intergenic 30.0%
! ATGTTGTTAATTTGGATGGT+AGG + chr8_2:68079499-68079518 Msa1264560:intron 30.0%
!!! CATTCCGATTTTGTTTTTTC+GGG + chr8_2:68079541-68079560 Msa1264560:intron 30.0%
!!! ATTCCGATTTTGTTTTTTCG+GGG + chr8_2:68079542-68079561 Msa1264560:intron 30.0%
TTTCATGAAACAACGTGTTT+GGG - chr8_2:68079625-68079644 None:intergenic 30.0%
TTGTGTTAAGTGAAAGTCAA+AGG - chr8_2:68079657-68079676 None:intergenic 30.0%
! CTGGTAAGCATTGTATTTAT+TGG + chr8_2:68079847-68079866 Msa1264560:intron 30.0%
GATTTGAAGGAGCTTAAAAT+GGG + chr8_2:68079966-68079985 Msa1264560:CDS 30.0%
ATTTGAAGGAGCTTAAAATG+GGG + chr8_2:68079967-68079986 Msa1264560:CDS 30.0%
AAAATGGGGTAATATCCTAA+AGG + chr8_2:68079981-68080000 Msa1264560:intron 30.0%
AACATAAGAAAGGATGATCT+AGG - chr8_2:68080009-68080028 None:intergenic 30.0%
TTATTGCCGTACATTCTTAT+GGG + chr8_2:68080169-68080188 Msa1264560:intron 30.0%
TATGTTTATCTTTGAGCAGT+AGG - chr8_2:68080376-68080395 None:intergenic 30.0%
TACTGCTCAAAGATAAACAT+AGG + chr8_2:68080375-68080394 Msa1264560:intron 30.0%
TCAAAGATAAACATAGGAAG+TGG + chr8_2:68080381-68080400 Msa1264560:intron 30.0%
TTAAAGCATAAACCTTGTCT+TGG + chr8_2:68080452-68080471 Msa1264560:intron 30.0%
TAAAGCATAAACCTTGTCTT+GGG + chr8_2:68080453-68080472 Msa1264560:intron 30.0%
AAGAAAAATAACCCAAGACA+AGG - chr8_2:68080467-68080486 None:intergenic 30.0%
!! TAAAAAGTAAACTCTGGAAC+TGG - chr8_2:68080513-68080532 None:intergenic 30.0%
GGTTCATAAAAAGTAAACTC+TGG - chr8_2:68080519-68080538 None:intergenic 30.0%
!! ATTTTTGAATGATGGTGACA+AGG + chr8_2:68080676-68080695 Msa1264560:CDS 30.0%
! TCAAGTGTATTCAGATCTTT+TGG + chr8_2:68080754-68080773 Msa1264560:intron 30.0%
AAGGTCATAGTAAACCTTAA+AGG + chr8_2:68080794-68080813 Msa1264560:CDS 30.0%
!! ATTCTTTTTCACGACCTTTA+AGG - chr8_2:68080811-68080830 None:intergenic 30.0%
AGCATTTGTACCAAAAAAGA+AGG + chr8_2:68080935-68080954 Msa1264560:intron 30.0%
AAAATAAGATATCAGCAGAG+TGG - chr8_2:68081079-68081098 None:intergenic 30.0%
!! TTATGAAGATGTTTTTGTCG+CGG - chr8_2:68081199-68081218 None:intergenic 30.0%
!!! TTCTGCACTTCAGTTTTATT+TGG - chr8_2:68081230-68081249 None:intergenic 30.0%
CATAGTTGAAAACTTCCATA+CGG + chr8_2:68081306-68081325 Msa1264560:exon 30.0%
ATAGTTGAAAACTTCCATAC+GGG + chr8_2:68081307-68081326 Msa1264560:exon 30.0%
! CCCAATCCTCAAATTTTCAT+TGG + chr8_2:68077502-68077521 Msa1264560:five_prime_UTR 35.0%
GATTGAAAATTGAGGGAATG+AGG - chr8_2:68077713-68077732 None:intergenic 35.0%
GGGAGAAGATTGAAAATTGA+GGG - chr8_2:68077720-68077739 None:intergenic 35.0%
AGGGAGAAGATTGAAAATTG+AGG - chr8_2:68077721-68077740 None:intergenic 35.0%
ACTCTGATCAATAAGCCTAA+CGG - chr8_2:68077981-68078000 None:intergenic 35.0%
TGAAGATGCTGAACTTGATT+TGG + chr8_2:68078048-68078067 Msa1264560:intron 35.0%
TTGACCCAGTTCTATCATAT+AGG + chr8_2:68078084-68078103 Msa1264560:intron 35.0%
CATGCCTATATGATAGAACT+GGG - chr8_2:68078091-68078110 None:intergenic 35.0%
TCATGCCTATATGATAGAAC+TGG - chr8_2:68078092-68078111 None:intergenic 35.0%
! TAATGAGTATTGCGAATGCA+AGG + chr8_2:68078303-68078322 Msa1264560:intron 35.0%
! AATGAGTATTGCGAATGCAA+GGG + chr8_2:68078304-68078323 Msa1264560:intron 35.0%
!! GGATTGATTGAGCTATTTCT+AGG + chr8_2:68078325-68078344 Msa1264560:intron 35.0%
!! GTGAACTGATTTGAAACAGT+TGG - chr8_2:68078368-68078387 None:intergenic 35.0%
AATATGTGCTCAAAGGTCAA+TGG - chr8_2:68078416-68078435 None:intergenic 35.0%
ATGACATGACACAATTGCAT+AGG + chr8_2:68078440-68078459 Msa1264560:intron 35.0%
TGCAGATACTATTACCTACA+GGG - chr8_2:68078489-68078508 None:intergenic 35.0%
GCTAGACAATGATACAACTA+AGG - chr8_2:68078777-68078796 None:intergenic 35.0%
!!! GGTTTGGATGGTTAGTTTTT+TGG + chr8_2:68078922-68078941 Msa1264560:intron 35.0%
! CGGTCCAATTTTCATAACAT+TGG + chr8_2:68078987-68079006 Msa1264560:intron 35.0%
ACTTGTGGCTACTTAATGAT+TGG - chr8_2:68079071-68079090 None:intergenic 35.0%
ATCATTAAGTAGCCACAAGT+AGG + chr8_2:68079071-68079090 Msa1264560:intron 35.0%
GAAACGCTATACACCAAATT+TGG - chr8_2:68079119-68079138 None:intergenic 35.0%
!! GGTTCCAATTTTAATGTGAC+AGG + chr8_2:68079167-68079186 Msa1264560:intron 35.0%
CTTTCATGAAACAACGTGTT+TGG - chr8_2:68079626-68079645 None:intergenic 35.0%
ACACAATCAGAAGAATCTCT+TGG + chr8_2:68079671-68079690 Msa1264560:intron 35.0%
AATCAGAAGAATCTCTTGGT+GGG + chr8_2:68079675-68079694 Msa1264560:intron 35.0%
! TTTTAATGTAGCTAGTCGGA+TGG + chr8_2:68079944-68079963 Msa1264560:intron 35.0%
GGATTTGAAGGAGCTTAAAA+TGG + chr8_2:68079965-68079984 Msa1264560:CDS 35.0%
AGAATGGGTCAAATCTGATT+AGG - chr8_2:68080082-68080101 None:intergenic 35.0%
AATCAGATTTGACCCATTCT+TGG + chr8_2:68080082-68080101 Msa1264560:intron 35.0%
ATTTGACCCATTCTTGGTTA+TGG + chr8_2:68080088-68080107 Msa1264560:intron 35.0%
ATTGGTCCATAACCAAGAAT+GGG - chr8_2:68080097-68080116 None:intergenic 35.0%
AATTGGTCCATAACCAAGAA+TGG - chr8_2:68080098-68080117 None:intergenic 35.0%
GTTATTGCCGTACATTCTTA+TGG + chr8_2:68080168-68080187 Msa1264560:intron 35.0%
TATTGCCGTACATTCTTATG+GGG + chr8_2:68080170-68080189 Msa1264560:intron 35.0%
GTAAACCCCATAAGAATGTA+CGG - chr8_2:68080178-68080197 None:intergenic 35.0%
TTACTCTATGTTCTCTTGGA+AGG + chr8_2:68080194-68080213 Msa1264560:intron 35.0%
! ATTGTTCACAACTTGCTTCT+TGG + chr8_2:68080297-68080316 Msa1264560:intron 35.0%
TTGCTTCTTGGTTATGAACT+TGG + chr8_2:68080309-68080328 Msa1264560:intron 35.0%
TGCTTCTTGGTTATGAACTT+GGG + chr8_2:68080310-68080329 Msa1264560:intron 35.0%
TTATGAACTTGGGTTCAGTT+AGG + chr8_2:68080320-68080339 Msa1264560:intron 35.0%
AGGATTAAACAAACTCCTCT+TGG - chr8_2:68080356-68080375 None:intergenic 35.0%
! GCACGGAAATTTTTGAATGA+TGG + chr8_2:68080668-68080687 Msa1264560:CDS 35.0%
AAGGTCGTGAAAAAGAATTC+AGG + chr8_2:68080813-68080832 Msa1264560:CDS 35.0%
ACAGAGCAATATCAGTTACA+AGG - chr8_2:68081354-68081373 None:intergenic 35.0%
TAACTGATATTGCTCTGTTG+TGG + chr8_2:68081356-68081375 Msa1264560:three_prime_UTR 35.0%
TTTCAGCGTTTCAATAGACA+AGG - chr8_2:68081464-68081483 None:intergenic 35.0%
! TTTGAGTTTAACGGGAACGA+CGG - chr8_2:68077657-68077676 None:intergenic 40.0%
!! ATGCGAGGCTTTGAGTTTAA+CGG - chr8_2:68077666-68077685 None:intergenic 40.0%
TCATCGTCAGCATCTTTGTT+AGG - chr8_2:68077836-68077855 None:intergenic 40.0%
ATACGTACCTAAGTTTGGAG+AGG - chr8_2:68077871-68077890 None:intergenic 40.0%
GAAATAGGTCGAATACCGTT+AGG + chr8_2:68077963-68077982 Msa1264560:intron 40.0%
GATCAGAGTCAGAATATGGT+TGG + chr8_2:68077992-68078011 Msa1264560:intron 40.0%
TGGAGTAGTATCTCTTGATC+AGG + chr8_2:68078012-68078031 Msa1264560:intron 40.0%
TCTTGATCAGGCAATTCGAA+TGG + chr8_2:68078024-68078043 Msa1264560:intron 40.0%
GCAGATACTATTACCTACAG+GGG - chr8_2:68078488-68078507 None:intergenic 40.0%
CTGCAGATACTATTACCTAC+AGG - chr8_2:68078490-68078509 None:intergenic 40.0%
GTAGGTAATAGTATCTGCAG+AGG + chr8_2:68078490-68078509 Msa1264560:intron 40.0%
TTTGTAATGCCATCAACCAC+TGG - chr8_2:68078685-68078704 None:intergenic 40.0%
! AATCGGTTCAGTCATTGAAC+TGG + chr8_2:68078719-68078738 Msa1264560:intron 40.0%
ACTAAGGTTGAACCACTGAA+CGG - chr8_2:68078761-68078780 None:intergenic 40.0%
TGGTATAAGGTGGTCATGTA+AGG + chr8_2:68079007-68079026 Msa1264560:intron 40.0%
AGTAGCCACAAGTAGGTTAT+AGG + chr8_2:68079078-68079097 Msa1264560:intron 40.0%
ATCGTCCTATAACCTACTTG+TGG - chr8_2:68079086-68079105 None:intergenic 40.0%
!! TCTAGCCTTATGCAACTACT+TGG + chr8_2:68079144-68079163 Msa1264560:intron 40.0%
!! CTAGCCTTATGCAACTACTT+GGG + chr8_2:68079145-68079164 Msa1264560:intron 40.0%
!! TAGCCTTATGCAACTACTTG+GGG + chr8_2:68079146-68079165 Msa1264560:intron 40.0%
CTCCCCTGTCACATTAAAAT+TGG - chr8_2:68079174-68079193 None:intergenic 40.0%
CCACCCCGAAAAAACAAAAT+CGG - chr8_2:68079548-68079567 None:intergenic 40.0%
!!! CGATTTTGTTTTTTCGGGGT+GGG + chr8_2:68079546-68079565 Msa1264560:intron 40.0%
!!! GATTTTGTTTTTTCGGGGTG+GGG + chr8_2:68079547-68079566 Msa1264560:intron 40.0%
CAATCAGAAGAATCTCTTGG+TGG + chr8_2:68079674-68079693 Msa1264560:intron 40.0%
ATCAGAAGAATCTCTTGGTG+GGG + chr8_2:68079676-68079695 Msa1264560:intron 40.0%
!! ATAAGGAACGCTGACTTTCA+AGG - chr8_2:68079756-68079775 None:intergenic 40.0%
GGGTTTACTCTATGTTCTCT+TGG + chr8_2:68080190-68080209 Msa1264560:intron 40.0%
ACATAGGAAGTGGCAAATGT+CGG + chr8_2:68080391-68080410 Msa1264560:intron 40.0%
CTACAACTCAAAACTAACGC+TGG - chr8_2:68080540-68080559 None:intergenic 40.0%
! TCTTTTGGATCAATTGCTGC+AGG + chr8_2:68080769-68080788 Msa1264560:intron 40.0%
! AGACGTTTTCAGAACGATGT+TGG + chr8_2:68080857-68080876 Msa1264560:CDS 40.0%
! GACGTTTTCAGAACGATGTT+GGG + chr8_2:68080858-68080877 Msa1264560:CDS 40.0%
! TTTTCAGAACGATGTTGGGA+AGG + chr8_2:68080862-68080881 Msa1264560:CDS 40.0%
!!! CGTCATAGGACCTTCTTTTT+TGG - chr8_2:68080948-68080967 None:intergenic 40.0%
GTATCTGTAAAGCACGTCAT+AGG - chr8_2:68080962-68080981 None:intergenic 40.0%
GTGCTTTACAGATACTCTCT+TGG + chr8_2:68080967-68080986 Msa1264560:intron 40.0%
!! GCTTTCTTTGGTGTTTCTTG+AGG - chr8_2:68081254-68081273 None:intergenic 40.0%
TCATCTGCTTCAGCTTTCTT+TGG - chr8_2:68081266-68081285 None:intergenic 40.0%
TCTACAACTAGAATCCCGTA+TGG - chr8_2:68081324-68081343 None:intergenic 40.0%
! TACGGGATTCTAGTTGTAGA+AGG + chr8_2:68081324-68081343 Msa1264560:three_prime_UTR 40.0%
ATTGAAACGCTGAAACCTGA+AGG + chr8_2:68081469-68081488 Msa1264560:three_prime_UTR 40.0%
TGTCGAAGAGAGTGGTTAAT+GGG - chr8_2:68081498-68081517 None:intergenic 40.0%
TTGTCGAAGAGAGTGGTTAA+TGG - chr8_2:68081499-68081518 None:intergenic 40.0%
GAATACATTGTCGAAGAGAG+TGG - chr8_2:68081506-68081525 None:intergenic 40.0%
CATAGAAGAACAACAGCACA+AGG + chr8_2:68081525-68081544 Msa1264560:three_prime_UTR 40.0%
GAAAATTTGAGGATTGGGCC+TGG - chr8_2:68077500-68077519 None:intergenic 45.0%
!! GCGTTGGTTTACACTTTCCA+CGG - chr8_2:68077611-68077630 None:intergenic 45.0%
! GAAAGTGTAAACCAACGCCA+TGG + chr8_2:68077613-68077632 Msa1264560:exon 45.0%
!! TGCGAGGCTTTGAGTTTAAC+GGG - chr8_2:68077665-68077684 None:intergenic 45.0%
TGGGAAGGAAGAGTGAATGA+GGG - chr8_2:68077740-68077759 None:intergenic 45.0%
GAGGTTAACACCGTAACGAA+CGG - chr8_2:68077768-68077787 None:intergenic 45.0%
TCAGCATCTTTGTTAGGAGG+AGG - chr8_2:68077830-68077849 None:intergenic 45.0%
TCGTCAGCATCTTTGTTAGG+AGG - chr8_2:68077833-68077852 None:intergenic 45.0%
TTGATTAGACTCCTCCTGAC+TGG + chr8_2:68078951-68078970 Msa1264560:intron 45.0%
!! AAAATTGGACCGGCTGGTTT+GGG - chr8_2:68078979-68078998 None:intergenic 45.0%
GTTATGAAAATTGGACCGGC+TGG - chr8_2:68078985-68079004 None:intergenic 45.0%
GAACCCCAAGTAGTTGCATA+AGG - chr8_2:68079152-68079171 None:intergenic 45.0%
TTTAATGTGACAGGGGAGAG+TGG + chr8_2:68079176-68079195 Msa1264560:intron 45.0%
!!! CCGATTTTGTTTTTTCGGGG+TGG + chr8_2:68079545-68079564 Msa1264560:intron 45.0%
GAGTAAGTATGCAAGTGAGC+AGG - chr8_2:68079728-68079747 None:intergenic 45.0%
CTCACTTGCATACTTACTCG+CGG + chr8_2:68079729-68079748 Msa1264560:intron 45.0%
! GATCAGCAGAAGAAAAGTGC+TGG + chr8_2:68079828-68079847 Msa1264560:CDS 45.0%
! AGCTAGTCGGATGGATTTGA+AGG + chr8_2:68079953-68079972 Msa1264560:intron 45.0%
AGGATGATCTAGGCTCCTTT+AGG - chr8_2:68079999-68080018 None:intergenic 45.0%
TTAGGAAACGACACACCAAG+AGG + chr8_2:68080338-68080357 Msa1264560:intron 45.0%
CATAGGAAGTGGCAAATGTC+GGG + chr8_2:68080392-68080411 Msa1264560:intron 45.0%
CTGTACGTTTGAAAGCTGCA+CGG + chr8_2:68080651-68080670 Msa1264560:CDS 45.0%
GGATCAATTGCTGCAGGTTA+AGG + chr8_2:68080775-68080794 Msa1264560:intron 45.0%
TCGACCAGAACATAGCAAAG+CGG - chr8_2:68080897-68080916 None:intergenic 45.0%
AGCTGAAGCAGATGAAGTCT+CGG + chr8_2:68081271-68081290 Msa1264560:CDS 45.0%
GTGGTTAATGGGATTCCTTC+AGG - chr8_2:68081487-68081506 None:intergenic 45.0%
CACAAGGCTGATTGATCATC+TGG + chr8_2:68081541-68081560 Msa1264560:three_prime_UTR 45.0%
!! TATAAAATGATTATATTATA+TGG + chr8_2:68078901-68078920 Msa1264560:intron 5.0%
GTGGGAAGGAAGAGTGAATG+AGG - chr8_2:68077741-68077760 None:intergenic 50.0%
CTCTCGACCTCTCCAAACTT+AGG + chr8_2:68077861-68077880 Msa1264560:CDS 50.0%
GCGTGTGTGTGTGCTATAAG+CGG - chr8_2:68078138-68078157 None:intergenic 50.0%
TTCCACTCTCTTTCCCCTGT+AGG + chr8_2:68078472-68078491 Msa1264560:intron 50.0%
TACCTACAGGGGAAAGAGAG+TGG - chr8_2:68078477-68078496 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr8_2:68078157-68078176 None:intergenic 50.0%
GACACTCATTCACCGTTCAG+TGG + chr8_2:68078746-68078765 Msa1264560:intron 50.0%
! GAAAATTGGACCGGCTGGTT+TGG - chr8_2:68078980-68078999 None:intergenic 50.0%
ACAGGGGAGAGTGGTAGTAA+AGG + chr8_2:68079185-68079204 Msa1264560:intron 50.0%
GGGAGAGTGGTAGTAAAGGT+GGG + chr8_2:68079189-68079208 Msa1264560:intron 50.0%
! GGTAGTAAAGGTGGGAGCAT+TGG + chr8_2:68079197-68079216 Msa1264560:intron 50.0%
!! GATGCCGCTTTGCTATGTTC+TGG + chr8_2:68080890-68080909 Msa1264560:intron 50.0%
TCATGTGCAGCTTGCAACAG+AGG + chr8_2:68081160-68081179 Msa1264560:intron 50.0%
CATGCATCGGAGTTGAACCG+TGG + chr8_2:68077591-68077610 Msa1264560:five_prime_UTR 55.0%
GTGTAAACCAACGCCATGGC+TGG + chr8_2:68077617-68077636 Msa1264560:exon 55.0%
TTTAACGGGAACGACGGTGG+TGG - chr8_2:68077651-68077670 None:intergenic 55.0%
GAGTTTAACGGGAACGACGG+TGG - chr8_2:68077654-68077673 None:intergenic 55.0%
TAACGAACGGTTGCGTGGGA+AGG - chr8_2:68077755-68077774 None:intergenic 55.0%
TCCCACGCAACCGTTCGTTA+CGG + chr8_2:68077755-68077774 Msa1264560:CDS 55.0%
ACCGTAACGAACGGTTGCGT+GGG - chr8_2:68077759-68077778 None:intergenic 55.0%
GGGGAGAGTGGTAGTAAAGG+TGG + chr8_2:68079188-68079207 Msa1264560:intron 55.0%
TGTGCAGCTTGCAACAGAGG+AGG + chr8_2:68081163-68081182 Msa1264560:intron 55.0%
GGTAATGCCAGCCATGGCGT+TGG - chr8_2:68077627-68077646 None:intergenic 60.0%
! GGTGGTGGTAATGCCAGCCA+TGG - chr8_2:68077633-68077652 None:intergenic 60.0%
CACCGTAACGAACGGTTGCG+TGG - chr8_2:68077760-68077779 None:intergenic 60.0%
AACCTCCGTCCTTCCGCCTA+CGG + chr8_2:68077782-68077801 Msa1264560:CDS 60.0%
! TGGTTTGGGAGCCAGTCAGG+AGG - chr8_2:68078965-68078984 None:intergenic 60.0%
! TGACTGGCTCCCAAACCAGC+CGG + chr8_2:68078967-68078986 Msa1264560:intron 60.0%
CAAGCTGCACATGACCCGTG+TGG - chr8_2:68081154-68081173 None:intergenic 60.0%
! AACGGGAACGACGGTGGTGG+TGG - chr8_2:68077648-68077667 None:intergenic 65.0%
GAAGTTGCCACCGCCACCGT+AGG - chr8_2:68077801-68077820 None:intergenic 65.0%
!! GGCTGGTTTGGGAGCCAGTC+AGG - chr8_2:68078968-68078987 None:intergenic 65.0%
CACCGTAGGCGGAAGGACGG+AGG - chr8_2:68077787-68077806 None:intergenic 70.0%
CTCCGTCCTTCCGCCTACGG+TGG + chr8_2:68077785-68077804 Msa1264560:CDS 70.0%
CGCCACCGTAGGCGGAAGGA+CGG - chr8_2:68077790-68077809 None:intergenic 70.0%
CGTCCTTCCGCCTACGGTGG+CGG + chr8_2:68077788-68077807 Msa1264560:CDS 70.0%
GTTGCCACCGCCACCGTAGG+CGG - chr8_2:68077798-68077817 None:intergenic 70.0%
CCACCGCCACCGTAGGCGGA+AGG - chr8_2:68077794-68077813 None:intergenic 75.0%
! CCTTCCGCCTACGGTGGCGG+TGG + chr8_2:68077791-68077810 Msa1264560:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 68077483 68081704 68077483 ID=Msa1264560;Name=Msa1264560
chr8_2 mRNA 68077483 68081704 68077483 ID=Msa1264560-mRNA-1;Parent=Msa1264560;Name=Msa1264560-mRNA-1;_AED=0.23;_eAED=0.23;_QI=149|0.8|1|1|1|1|6|394|215
chr8_2 exon 68077483 68077882 68077483 ID=Msa1264560-mRNA-1:exon:22466;Parent=Msa1264560-mRNA-1
chr8_2 exon 68079794 68079849 68079794 ID=Msa1264560-mRNA-1:exon:22467;Parent=Msa1264560-mRNA-1
chr8_2 exon 68079955 68079988 68079955 ID=Msa1264560-mRNA-1:exon:22468;Parent=Msa1264560-mRNA-1
chr8_2 exon 68080625 68080697 68080625 ID=Msa1264560-mRNA-1:exon:22469;Parent=Msa1264560-mRNA-1
chr8_2 exon 68080791 68080883 68080791 ID=Msa1264560-mRNA-1:exon:22470;Parent=Msa1264560-mRNA-1
chr8_2 exon 68081170 68081704 68081170 ID=Msa1264560-mRNA-1:exon:22471;Parent=Msa1264560-mRNA-1
chr8_2 five_prime_UTR 68077483 68077631 68077483 ID=Msa1264560-mRNA-1:five_prime_utr;Parent=Msa1264560-mRNA-1
chr8_2 CDS 68077632 68077882 68077632 ID=Msa1264560-mRNA-1:cds;Parent=Msa1264560-mRNA-1
chr8_2 CDS 68079794 68079849 68079794 ID=Msa1264560-mRNA-1:cds;Parent=Msa1264560-mRNA-1
chr8_2 CDS 68079955 68079988 68079955 ID=Msa1264560-mRNA-1:cds;Parent=Msa1264560-mRNA-1
chr8_2 CDS 68080625 68080697 68080625 ID=Msa1264560-mRNA-1:cds;Parent=Msa1264560-mRNA-1
chr8_2 CDS 68080791 68080883 68080791 ID=Msa1264560-mRNA-1:cds;Parent=Msa1264560-mRNA-1
chr8_2 CDS 68081170 68081310 68081170 ID=Msa1264560-mRNA-1:cds;Parent=Msa1264560-mRNA-1
chr8_2 three_prime_UTR 68081311 68081704 68081311 ID=Msa1264560-mRNA-1:three_prime_utr;Parent=Msa1264560-mRNA-1
Gene Sequence

>Msa1264560

ATGGCTGGCATTACCACCACCACCGTCGTTCCCGTTAAACTCAAAGCCTCGCATCTATTCTCTAATAAACTCTCTATTCCTCATTCCCTCAATTTTCAATCTTCTCCCTCATTCACTCTTCCTTCCCACGCAACCGTTCGTTACGGTGTTAACCTCCGTCCTTCCGCCTACGGTGGCGGTGGCAACTTCAGAAGACCTCCTCCTAACAAAGATGCTGACGATGAACAAGCTCTCGACCTCTCCAAACTTAGTAAATATAGATATGAACTGCAGAAGAAGAAAAGAGATCAGCAGAAGAAAAGTGCTGCTAGTCGGATGGATTTGAAGGAGCTTAAAATGGGATACAATATAGATCAACATGATTATTCTGTACGTTTGAAAGCTGCACGGAAATTTTTGAATGATGGTGACAAGGTTAAGGTCATAGTAAACCTTAAAGGTCGTGAAAAAGAATTCAGGAATAATGCTATTGAGCTTATTAGACGTTTTCAGAACGATGTTGGGAAGCTTGCAACAGAGGAGGCTAAAAACTTCCGCGACAAAAACATCTTCATAACTTTGATTCCAAATAAAACTGAAGTGCAGAAACCTCAAGAAACACCAAAGAAAGCTGAAGCAGATGAAGTCTCGGTCAGTGTCGAAGCATAG

Protein sequence

>Msa1264560

MAGITTTTVVPVKLKASHLFSNKLSIPHSLNFQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRPPPNKDADDEQALDLSKLSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLNDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFRDKNIFITLIPNKTEVQKPQETPKKAEADEVSVSVEA*