AlfalfaGEDB | Msa1368820

M. sativa cultivar zhongmu-4 / Msa1368820

KEGG: K04730|K10683
GO: GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010212 GO:0010332 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019827 GO:0022603 GO:0022607 GO:0022622 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032259 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034622 GO:0034641 GO:0034968 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045892 GO:0045893 GO:0045922 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065003 GO:0065004 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0080090 GO:0080182 GO:0090068 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0104004 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1905269 GO:1905392 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
PFAM: PF00097.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368820	XP_003625346.1	96.657	688	22	1	1	688	1	687	0.0	1368

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368820	sp\|F4I443\|BARD1_ARATH	40.393	713	378	9	15	687	8	713	4.08e-166	496

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368820	G7KXD0	96.657	688	22	1	1	688	1	687	0.0	1368

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0421750	Msa1368820	0.803885	2.814980e-49	-8.615850e-47
Msa1037220	Msa1368820	0.985856	6.958515e-165	-8.615850e-47
Msa1077490	Msa1368820	0.811415	7.080766e-51	-8.615850e-47
Msa1164140	Msa1368820	0.867092	1.765200e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368820	MtrunA17_Chr7g0261781	96.657	688	22	1	1	688	1	687	0.0	1368
Msa1368820	MtrunA17_Chr2g0285611	45.855	386	189	7	316	684	621	1003	1.19e-99	328
Msa1368820	MtrunA17_Chr2g0285611	41.667	84	49	0	20	103	1	84	1.03e-15	81.6
Msa1368820	MtrunA17_Chr2g0316851	42.697	89	49	2	351	438	425	512	1.54e-17	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368820	AT1G04020.1	41.036	714	371	13	15	687	8	712	1.47e-166	495
Msa1368820	AT1G04020.2	41.036	714	371	13	15	687	8	712	1.50e-166	495
Msa1368820	AT4G21070.1	43.377	385	190	7	316	683	564	937	1.38e-96	319
Msa1368820	AT4G21070.1	36.486	74	47	0	22	95	6	79	9.20e-14	75.5
Msa1368820	AT3G15120.2	46.914	81	41	2	353	432	560	639	2.38e-17	87.4

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Find 148 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTACATGATCCCAG+CGG	0.774516	tig0018661:-33091	None:intergenic
AAATTGATCTTGACAACCAA+GGG	0.574072	tig0018661:+35475	Msa1368820:CDS
AACACCAAGTGCTCTCAAAA+AGG	0.361103	tig0018661:+30876	Msa1368820:CDS
AACGAACAAATGCTTGTACT+TGG	0.370350	tig0018661:-32419	None:intergenic
AAGAAAGAATGCCTCATTTC+TGG	0.160062	tig0018661:+32198	Msa1368820:CDS
AAGAATCTTACAAATGAAGA+TGG	0.536135	tig0018661:+32275	Msa1368820:CDS
AAGCTGAATTGTAAAGAGTT+TGG	0.335005	tig0018661:-31708	None:intergenic
AAGCTTAAATGCACCAAATG+CGG	0.643172	tig0018661:+32984	Msa1368820:CDS
AAGTCACTTGGTGCATTTGA+AGG	0.460513	tig0018661:-32392	None:intergenic
AAGTTCTGCCTCTGAAAACG+AGG	0.652089	tig0018661:+32226	Msa1368820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCACAAAAATGGAAAATTC+TGG	+	tig0018661:30430-30449	Msa1368820:exon	30.0%
TATAATTCACAGTTCCTGTT+TGG	+	tig0018661:30815-30834	Msa1368820:intron	30.0%
AAACTAACCATACAAAAGCA+GGG	-	tig0018661:31199-31218	None:intergenic	30.0%
AAAACTAACCATACAAAAGC+AGG	-	tig0018661:31200-31219	None:intergenic	30.0%
TACCCACAAATTAAACAAGT+AGG	-	tig0018661:31334-31353	None:intergenic	30.0%
GTTGATTAATATGCTTGGTT+TGG	+	tig0018661:31365-31384	Msa1368820:intron	30.0%
TATTCCTCAACAAATGCAAA+AGG	-	tig0018661:31598-31617	None:intergenic	30.0%
AAGCTGAATTGTAAAGAGTT+TGG	-	tig0018661:31711-31730	None:intergenic	30.0%
TTGTAATAAGAAGGTTGACA+AGG	+	tig0018661:31732-31751	Msa1368820:CDS	30.0%
TAAGATGAATGATAAAGCCA+AGG	+	tig0018661:31816-31835	Msa1368820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018661	gene	30389	36613	30389	ID=Msa1368820;Name=Msa1368820
tig0018661	mRNA	30389	36613	30389	ID=Msa1368820-mRNA-1;Parent=Msa1368820;Name=Msa1368820-mRNA-1;_AED=0.07;_eAED=0.07;_QI=50\|1\|1\|1\|0.92\|0.85\|14\|295\|688
tig0018661	exon	30389	30542	30389	ID=Msa1368820-mRNA-1:exon:670;Parent=Msa1368820-mRNA-1
tig0018661	exon	30634	30687	30634	ID=Msa1368820-mRNA-1:exon:671;Parent=Msa1368820-mRNA-1
tig0018661	exon	30827	30897	30827	ID=Msa1368820-mRNA-1:exon:672;Parent=Msa1368820-mRNA-1
tig0018661	exon	31487	31582	31487	ID=Msa1368820-mRNA-1:exon:673;Parent=Msa1368820-mRNA-1
tig0018661	exon	31683	31996	31683	ID=Msa1368820-mRNA-1:exon:674;Parent=Msa1368820-mRNA-1
tig0018661	exon	32128	32466	32128	ID=Msa1368820-mRNA-1:exon:675;Parent=Msa1368820-mRNA-1
tig0018661	exon	32603	32703	32603	ID=Msa1368820-mRNA-1:exon:676;Parent=Msa1368820-mRNA-1
tig0018661	exon	32917	33103	32917	ID=Msa1368820-mRNA-1:exon:677;Parent=Msa1368820-mRNA-1
tig0018661	exon	33207	33313	33207	ID=Msa1368820-mRNA-1:exon:678;Parent=Msa1368820-mRNA-1
tig0018661	exon	33581	33671	33581	ID=Msa1368820-mRNA-1:exon:679;Parent=Msa1368820-mRNA-1
tig0018661	exon	34704	34869	34704	ID=Msa1368820-mRNA-1:exon:680;Parent=Msa1368820-mRNA-1
tig0018661	exon	35424	35542	35424	ID=Msa1368820-mRNA-1:exon:681;Parent=Msa1368820-mRNA-1
tig0018661	exon	35970	36513	35970	ID=Msa1368820-mRNA-1:exon:682;Parent=Msa1368820-mRNA-1
tig0018661	exon	36545	36613	36545	ID=Msa1368820-mRNA-1:exon:683;Parent=Msa1368820-mRNA-1
tig0018661	five_prime_UTR	30389	30438	30389	ID=Msa1368820-mRNA-1:five_prime_utr;Parent=Msa1368820-mRNA-1
tig0018661	CDS	30439	30542	30439	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	30634	30687	30634	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	30827	30897	30827	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	31487	31582	31487	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	31683	31996	31683	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	32128	32466	32128	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	32603	32703	32603	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	32917	33103	32917	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	33207	33313	33207	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	33581	33671	33581	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	34704	34869	34704	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	35424	35542	35424	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	CDS	35970	36287	35970	ID=Msa1368820-mRNA-1:cds;Parent=Msa1368820-mRNA-1
tig0018661	three_prime_UTR	36288	36513	36288	ID=Msa1368820-mRNA-1:three_prime_utr;Parent=Msa1368820-mRNA-1
tig0018661	three_prime_UTR	36545	36613	36545	ID=Msa1368820-mRNA-1:three_prime_utr;Parent=Msa1368820-mRNA-1

Gene Sequence

>Msa1368820

ATGGAAAATTCTGGAAAATCAATAATCAACAACAACACTAAATTATTGAATCCATGGATGCTTCATTTTCAAAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCTTGAACTTGTTCAAGAAACCGGTTTTGTTGCCATGCAATCATTTGTTCTGCAGTTCCTGTTTGGCGGATAGTACTTCGATTCGTTCTGAATGTGCTCTCTGTAACACCAAGTGCTCTCAAAAAGATATTAGGCATTTGCCTTTTGTGGAAAATATAGTAACAATTTATAAAAGCTTGGATGCGACATTTTGTGCGAACGCTTTTCAGCAACGTTCTTCTGATAATACGAGGGTTTTGGAGCAGTGCCAAACTCTTTACAATTCAGCTTGTTGTAATAAGAAGGTTGACAAGGTTCTGCAGAATTCATGTATGTCGAATGAAGTTGGGGTTGGTAAGAATCTCCAATCTGGGATTAAGATGAATGATAAAGCCAAGGAGGTTGAAATGTCTTGCAAGAGAGGGGGTGACAACCACATTGCAGAGAAGCCCGATTCAATGAATTTGAATCAAGCGACACAATCAGAACCAGACAGCCCTCCATTTTGTGATACCAAAGGTTCTGATAATGGTTGCAGTGATCAAAACAGCGAGAAGCCACTCAGTCTTGGGAGGTCTGAAAGTTCGTCATTGAAAAGATCAAGCACAACAGGAAAAGGTAATTTGAAAGAAAGAATGCCTCATTTCTGGTCTGAAAGTTCTGCCTCTGAAAACGAGGATCTTACGAGAGATCTCAAGAGACAAAAGAATCTTACAAATGAAGATGGTATTGTTCAACAAAACACCTCATATCATAACAAGCTTGTGGATTCCTGCTGTGACTTGGAAATTAAATCTGACAAGGACACTGGTGCACTTGTACCTTCAAATGCACCAAGTGACTTGTACCCAAGTACAAGCATTTGTTCGTTTTGTCAGTCCTCTAAAATTTCCGAGGCTACTGGGTCAATGCTGCATTATGCAAGTGGGATTTCAGTTACGGGAGAGGCTGCAATGGAACCAAATGTTGTGCATGTGCATAAAGTTTGTATTGACTGGGCACCACAAGTGTATTTTGTTGGTGAAACTGTTAAGAATTTGAAAGCAGAAGTGGCCCGGGGAGCAAAGCTTAAATGCACCAAATGCGGTAAAAAGGGAGCTGCTCTTGGTTGCTATGTCAAGTCATGCAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCTGCTTGCCGCTGGGATCATGTGGATTATCTCTTGTTGTGTCCTAGTCATTCAAATGTCAAATTTCCAAACGAGAAATCTAATCTTAATAAACAGGCAACTCAGAAGCATCCCGTTTCATCTCATCTGCTATCTCAACAGTCAAACCAACTGGGAGCTTTTCAGGATGATGGTAAAAAAATGGTTTTCTGTGGATCTGCTCTATCAAATGAAGAAAAGGTGCTATTGATTAATTTTGCAAGCAAGGTTGGTGCTTCAGTGTCCAAGTGTTGGACCTCAGATGTCACACATGTGATCGCAGCAACTGATGCAAATGGAGCATGCTCCAGGACATTGAAAGTTTTGAGGGCGATTCTAAATGGACAATGGATCCTAAAAGTGGACTGGATAAGAGCATGCATGAAAGCGATGAATCTTGTAGAAGAAGAACTGTATGAAATTGATCTTGACAACCAAGGGTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAACGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGTGAATATGATTTGAGTTATAAGAAATATCTTGAAGATTTAGTTGAAGGGGGAGGAGGTGTTGTTTTGAAAAGCAAGGATGACTTGGAAGTTGGAAGAGGTGCAAATTTGTTGGCAGTTTACAATCTTGATCCCCCAGAAGGATGTGAGCTGGAGGACGAAGTTTCAATTCTTTGGCAGAGATTAACTGAAGCAGAGAATTTAACTGCCAATACTGCTGGTCACACGTGGATTCTTGAGTCAATTGCTGCATGCAAATTGCAGCCTTTTGTTAGCTAA

Protein sequence

>Msa1368820

MENSGKSIINNNTKLLNPWMLHFQKLALELKCPLCLNLFKKPVLLPCNHLFCSSCLADSTSIRSECALCNTKCSQKDIRHLPFVENIVTIYKSLDATFCANAFQQRSSDNTRVLEQCQTLYNSACCNKKVDKVLQNSCMSNEVGVGKNLQSGIKMNDKAKEVEMSCKRGGDNHIAEKPDSMNLNQATQSEPDSPPFCDTKGSDNGCSDQNSEKPLSLGRSESSSLKRSSTTGKGNLKERMPHFWSESSASENEDLTRDLKRQKNLTNEDGIVQQNTSYHNKLVDSCCDLEIKSDKDTGALVPSNAPSDLYPSTSICSFCQSSKISEATGSMLHYASGISVTGEAAMEPNVVHVHKVCIDWAPQVYFVGETVKNLKAEVARGAKLKCTKCGKKGAALGCYVKSCRRTYHVPCAMDISACRWDHVDYLLLCPSHSNVKFPNEKSNLNKQATQKHPVSSHLLSQQSNQLGAFQDDGKKMVFCGSALSNEEKVLLINFASKVGASVSKCWTSDVTHVIAATDANGACSRTLKVLRAILNGQWILKVDWIRACMKAMNLVEEELYEIDLDNQGCQGGPKAGRLRALANEPKLFSGLKFYFSGEYDLSYKKYLEDLVEGGGGVVLKSKDDLEVGRGANLLAVYNLDPPEGCELEDEVSILWQRLTEAENLTANTAGHTWILESIAACKLQPFVS*