Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369750 | XP_013470305.1 | 91.092 | 348 | 10 | 7 | 1 | 341 | 1 | 334 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369750 | sp|Q700D9|MYBF_ARATH | 72.152 | 79 | 22 | 0 | 5 | 83 | 4 | 82 | 4.63e-33 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369750 | A0A072VSF0 | 91.092 | 348 | 10 | 7 | 1 | 341 | 1 | 334 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1369750 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044290 | Msa1369750 | 0.919208 | 5.998876e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369750 | MtrunA17_Chr1g0210911 | 91.092 | 348 | 10 | 7 | 1 | 341 | 1 | 334 | 0.0 | 608 |
| Msa1369750 | MtrunA17_Chr1g0162931 | 47.493 | 339 | 117 | 15 | 3 | 338 | 2 | 282 | 2.42e-77 | 238 |
| Msa1369750 | MtrunA17_Chr2g0320231 | 60.870 | 92 | 33 | 2 | 8 | 99 | 81 | 169 | 1.50e-31 | 122 |
| Msa1369750 | MtrunA17_Chr2g0288601 | 69.118 | 68 | 21 | 0 | 8 | 75 | 55 | 122 | 7.38e-29 | 108 |
| Msa1369750 | MtrunA17_Chr7g0243081 | 64.557 | 79 | 28 | 0 | 2 | 80 | 49 | 127 | 2.19e-28 | 112 |
| Msa1369750 | MtrunA17_Chr8g0379121 | 69.697 | 66 | 20 | 0 | 15 | 80 | 102 | 167 | 4.27e-28 | 113 |
| Msa1369750 | MtrunA17_Chr2g0283951 | 60.227 | 88 | 29 | 3 | 4 | 85 | 68 | 155 | 1.08e-25 | 105 |
| Msa1369750 | MtrunA17_Chr3g0095611 | 57.971 | 69 | 29 | 0 | 14 | 82 | 9 | 77 | 6.17e-24 | 97.8 |
| Msa1369750 | MtrunA17_Chr5g0410741 | 47.170 | 106 | 49 | 3 | 23 | 127 | 218 | 317 | 9.90e-22 | 95.1 |
| Msa1369750 | MtrunA17_Chr6g0479431 | 63.793 | 58 | 21 | 0 | 23 | 80 | 201 | 258 | 2.97e-21 | 93.2 |
| Msa1369750 | MtrunA17_Chr8g0366281 | 65.517 | 58 | 20 | 0 | 23 | 80 | 172 | 229 | 3.21e-21 | 93.2 |
| Msa1369750 | MtrunA17_Chr1g0154261 | 59.091 | 66 | 25 | 1 | 15 | 80 | 119 | 182 | 9.60e-21 | 90.9 |
| Msa1369750 | MtrunA17_Chr3g0109981 | 63.793 | 58 | 21 | 0 | 23 | 80 | 273 | 330 | 3.74e-20 | 90.9 |
| Msa1369750 | MtrunA17_Chr1g0190301 | 67.857 | 56 | 18 | 0 | 25 | 80 | 176 | 231 | 8.10e-20 | 89.4 |
| Msa1369750 | MtrunA17_Chr7g0261911 | 66.071 | 56 | 19 | 0 | 25 | 80 | 263 | 318 | 1.79e-19 | 89.4 |
| Msa1369750 | MtrunA17_Chr7g0274471 | 66.071 | 56 | 19 | 0 | 25 | 80 | 219 | 274 | 4.53e-19 | 87.8 |
| Msa1369750 | MtrunA17_Chr5g0409731 | 47.059 | 102 | 44 | 3 | 1 | 97 | 1 | 97 | 3.43e-18 | 83.6 |
| Msa1369750 | MtrunA17_Chr5g0417521 | 47.778 | 90 | 37 | 3 | 25 | 109 | 16 | 100 | 4.03e-17 | 81.3 |
| Msa1369750 | MtrunA17_Chr6g0461641 | 55.882 | 68 | 30 | 0 | 25 | 92 | 43 | 110 | 4.10e-17 | 81.6 |
| Msa1369750 | MtrunA17_Chr1g0197171 | 36.170 | 141 | 72 | 3 | 25 | 162 | 45 | 170 | 1.16e-16 | 79.3 |
| Msa1369750 | MtrunA17_Chr2g0321461 | 62.264 | 53 | 20 | 0 | 25 | 77 | 46 | 98 | 6.36e-16 | 78.2 |
| Msa1369750 | MtrunA17_Chr8g0356501 | 56.452 | 62 | 22 | 1 | 25 | 86 | 38 | 94 | 2.24e-15 | 76.3 |
| Msa1369750 | MtrunA17_Chr7g0258551 | 54.098 | 61 | 28 | 0 | 20 | 80 | 208 | 268 | 2.44e-15 | 76.3 |
| Msa1369750 | MtrunA17_Chr2g0290991 | 56.452 | 62 | 22 | 1 | 25 | 86 | 40 | 96 | 4.96e-15 | 74.7 |
| Msa1369750 | MtrunA17_Chr2g0310011 | 56.452 | 62 | 22 | 1 | 25 | 86 | 36 | 92 | 5.05e-15 | 75.1 |
| Msa1369750 | MtrunA17_Chr4g0042451 | 55.932 | 59 | 26 | 0 | 25 | 83 | 18 | 76 | 7.51e-15 | 74.7 |
| Msa1369750 | MtrunA17_Chr7g0254981 | 65.385 | 52 | 18 | 0 | 26 | 77 | 52 | 103 | 7.91e-15 | 73.9 |
| Msa1369750 | MtrunA17_Chr2g0291021 | 65.385 | 52 | 18 | 0 | 26 | 77 | 51 | 102 | 8.46e-15 | 74.3 |
| Msa1369750 | MtrunA17_Chr1g0175091 | 63.462 | 52 | 19 | 0 | 26 | 77 | 260 | 311 | 9.39e-15 | 74.7 |
| Msa1369750 | MtrunA17_Chr1g0175071 | 35.484 | 124 | 66 | 2 | 2 | 123 | 155 | 266 | 2.51e-14 | 72.8 |
| Msa1369750 | MtrunA17_Chr1g0175081 | 55.769 | 52 | 23 | 0 | 26 | 77 | 24 | 75 | 1.00e-12 | 63.9 |
| Msa1369750 | MtrunA17_Chr4g0045361 | 61.224 | 49 | 19 | 0 | 29 | 77 | 279 | 327 | 1.46e-12 | 68.2 |
| Msa1369750 | MtrunA17_Chr4g0009901 | 43.662 | 71 | 39 | 1 | 7 | 77 | 151 | 220 | 4.64e-12 | 65.5 |
| Msa1369750 | MtrunA17_Chr4g0062921 | 59.184 | 49 | 20 | 0 | 29 | 77 | 240 | 288 | 5.76e-12 | 66.2 |
| Msa1369750 | MtrunA17_Chr5g0402631 | 59.184 | 49 | 20 | 0 | 29 | 77 | 219 | 267 | 2.88e-11 | 63.9 |
| Msa1369750 | MtrunA17_Chr4g0031961 | 50.794 | 63 | 30 | 1 | 15 | 77 | 122 | 183 | 3.87e-11 | 63.2 |
| Msa1369750 | MtrunA17_Chr5g0422621 | 55.102 | 49 | 22 | 0 | 29 | 77 | 203 | 251 | 9.56e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369750 | AT1G14600.1 | 72.152 | 79 | 22 | 0 | 5 | 83 | 4 | 82 | 4.70e-34 | 126 |
| Msa1369750 | AT2G02060.2 | 69.512 | 82 | 20 | 1 | 1 | 77 | 1 | 82 | 1.94e-33 | 124 |
| Msa1369750 | AT2G02060.1 | 69.512 | 82 | 20 | 1 | 1 | 77 | 1 | 82 | 1.94e-33 | 124 |
| Msa1369750 | AT4G04605.1 | 70.149 | 67 | 20 | 0 | 16 | 82 | 6 | 72 | 9.16e-29 | 111 |
| Msa1369750 | AT2G40260.1 | 66.667 | 75 | 25 | 0 | 13 | 87 | 71 | 145 | 3.83e-28 | 113 |
| Msa1369750 | AT2G42660.1 | 55.319 | 94 | 39 | 1 | 16 | 106 | 42 | 135 | 3.63e-27 | 107 |
| Msa1369750 | AT2G38300.1 | 54.737 | 95 | 41 | 1 | 1 | 95 | 31 | 123 | 3.20e-26 | 107 |
| Msa1369750 | AT4G04555.1 | 54.054 | 74 | 34 | 0 | 13 | 86 | 3 | 76 | 3.88e-22 | 90.1 |
| Msa1369750 | AT5G42630.2 | 43.363 | 113 | 58 | 3 | 6 | 113 | 86 | 197 | 2.42e-21 | 91.3 |
| Msa1369750 | AT5G42630.1 | 43.363 | 113 | 58 | 3 | 6 | 113 | 86 | 197 | 3.07e-21 | 92.0 |
| Msa1369750 | AT4G17695.1 | 62.712 | 59 | 22 | 0 | 23 | 81 | 163 | 221 | 4.38e-21 | 92.8 |
| Msa1369750 | AT1G32240.2 | 63.793 | 58 | 21 | 0 | 23 | 80 | 212 | 269 | 1.78e-20 | 91.7 |
| Msa1369750 | AT1G32240.1 | 63.793 | 58 | 21 | 0 | 23 | 80 | 212 | 269 | 2.02e-20 | 91.7 |
| Msa1369750 | AT5G16560.1 | 63.793 | 58 | 21 | 0 | 23 | 80 | 218 | 275 | 4.50e-20 | 90.9 |
| Msa1369750 | AT4G04580.1 | 56.716 | 67 | 29 | 0 | 16 | 82 | 6 | 72 | 3.14e-19 | 84.0 |
| Msa1369750 | AT4G28610.1 | 63.636 | 55 | 20 | 0 | 26 | 80 | 227 | 281 | 4.81e-18 | 85.1 |
| Msa1369750 | AT5G45580.1 | 53.333 | 75 | 35 | 0 | 21 | 95 | 4 | 78 | 1.26e-17 | 82.0 |
| Msa1369750 | AT5G45580.2 | 53.333 | 75 | 35 | 0 | 21 | 95 | 20 | 94 | 1.55e-17 | 82.0 |
| Msa1369750 | AT3G24120.2 | 42.017 | 119 | 56 | 4 | 25 | 141 | 42 | 149 | 1.79e-17 | 82.0 |
| Msa1369750 | AT3G24120.1 | 42.017 | 119 | 56 | 4 | 25 | 141 | 42 | 149 | 1.81e-17 | 82.0 |
| Msa1369750 | AT3G04450.3 | 63.636 | 55 | 20 | 0 | 26 | 80 | 240 | 294 | 2.47e-17 | 82.0 |
| Msa1369750 | AT3G04450.4 | 63.636 | 55 | 20 | 0 | 26 | 80 | 200 | 254 | 2.72e-17 | 82.8 |
| Msa1369750 | AT3G04450.2 | 63.636 | 55 | 20 | 0 | 26 | 80 | 200 | 254 | 2.72e-17 | 82.8 |
| Msa1369750 | AT3G04450.1 | 63.636 | 55 | 20 | 0 | 26 | 80 | 240 | 294 | 3.22e-17 | 82.8 |
| Msa1369750 | AT5G29000.1 | 63.636 | 55 | 20 | 0 | 26 | 80 | 190 | 244 | 3.72e-17 | 82.0 |
| Msa1369750 | AT5G29000.3 | 63.636 | 55 | 20 | 0 | 26 | 80 | 190 | 244 | 3.72e-17 | 82.0 |
| Msa1369750 | AT5G29000.2 | 63.636 | 55 | 20 | 0 | 26 | 80 | 233 | 287 | 5.56e-17 | 81.6 |
| Msa1369750 | AT5G29000.4 | 63.636 | 55 | 20 | 0 | 26 | 80 | 233 | 287 | 5.78e-17 | 80.9 |
| Msa1369750 | AT4G13640.1 | 48.276 | 87 | 35 | 2 | 25 | 111 | 38 | 114 | 3.32e-16 | 78.2 |
| Msa1369750 | AT4G13640.2 | 48.276 | 87 | 35 | 2 | 25 | 111 | 38 | 114 | 3.38e-16 | 78.2 |
| Msa1369750 | AT2G20400.2 | 61.818 | 55 | 21 | 0 | 26 | 80 | 233 | 287 | 3.45e-16 | 79.3 |
| Msa1369750 | AT2G20400.1 | 61.818 | 55 | 21 | 0 | 26 | 80 | 233 | 287 | 3.56e-16 | 79.3 |
| Msa1369750 | AT2G06020.1 | 38.182 | 110 | 59 | 3 | 7 | 107 | 66 | 175 | 3.69e-16 | 78.2 |
| Msa1369750 | AT3G12730.1 | 49.351 | 77 | 33 | 2 | 25 | 100 | 24 | 95 | 4.01e-16 | 77.0 |
| Msa1369750 | AT5G18240.2 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 6.09e-16 | 78.6 |
| Msa1369750 | AT5G18240.3 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 6.09e-16 | 78.6 |
| Msa1369750 | AT5G18240.5 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 6.76e-16 | 78.6 |
| Msa1369750 | AT5G18240.1 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 7.35e-16 | 78.6 |
| Msa1369750 | AT5G18240.4 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 7.35e-16 | 78.6 |
| Msa1369750 | AT3G13040.3 | 65.385 | 52 | 18 | 0 | 26 | 77 | 243 | 294 | 8.49e-16 | 78.6 |
| Msa1369750 | AT3G13040.1 | 65.385 | 52 | 18 | 0 | 26 | 77 | 243 | 294 | 8.49e-16 | 78.6 |
| Msa1369750 | AT3G13040.2 | 65.385 | 52 | 18 | 0 | 26 | 77 | 243 | 294 | 8.49e-16 | 78.6 |
| Msa1369750 | AT3G04030.1 | 58.491 | 53 | 22 | 0 | 25 | 77 | 46 | 98 | 1.31e-15 | 77.4 |
| Msa1369750 | AT3G04030.3 | 58.491 | 53 | 22 | 0 | 25 | 77 | 46 | 98 | 1.55e-15 | 77.4 |
| Msa1369750 | AT1G79430.2 | 56.452 | 62 | 22 | 1 | 25 | 86 | 35 | 91 | 3.56e-15 | 76.3 |
| Msa1369750 | AT2G01060.1 | 65.385 | 52 | 18 | 0 | 26 | 77 | 17 | 68 | 4.58e-15 | 75.1 |
| Msa1369750 | AT1G69580.1 | 46.341 | 82 | 40 | 2 | 25 | 103 | 35 | 115 | 2.41e-14 | 73.6 |
| Msa1369750 | AT1G69580.2 | 46.341 | 82 | 40 | 2 | 25 | 103 | 35 | 115 | 2.47e-14 | 73.6 |
| Msa1369750 | AT1G25550.1 | 63.265 | 49 | 18 | 0 | 29 | 77 | 214 | 262 | 1.06e-13 | 71.6 |
| Msa1369750 | AT5G06800.3 | 61.538 | 52 | 20 | 0 | 26 | 77 | 194 | 245 | 1.44e-13 | 70.5 |
| Msa1369750 | AT5G06800.1 | 61.538 | 52 | 20 | 0 | 26 | 77 | 194 | 245 | 3.46e-13 | 70.1 |
| Msa1369750 | AT5G06800.2 | 61.538 | 52 | 20 | 0 | 26 | 77 | 194 | 245 | 3.63e-13 | 70.1 |
| Msa1369750 | AT3G04030.2 | 54.717 | 53 | 23 | 1 | 25 | 77 | 46 | 97 | 6.76e-13 | 69.3 |
| Msa1369750 | AT1G25550.2 | 47.826 | 69 | 36 | 0 | 9 | 77 | 194 | 262 | 1.42e-12 | 67.4 |
| Msa1369750 | AT2G03500.1 | 59.184 | 49 | 20 | 0 | 29 | 77 | 238 | 286 | 5.71e-12 | 67.0 |
| Msa1369750 | AT5G44190.1 | 48.571 | 70 | 34 | 2 | 23 | 91 | 146 | 214 | 7.13e-12 | 66.2 |
| Msa1369750 | AT5G44190.2 | 48.571 | 70 | 34 | 2 | 23 | 91 | 146 | 214 | 8.70e-12 | 65.9 |
| Msa1369750 | AT4G37180.1 | 54.237 | 59 | 27 | 0 | 19 | 77 | 205 | 263 | 8.86e-12 | 65.9 |
| Msa1369750 | AT5G59570.2 | 53.571 | 56 | 25 | 1 | 22 | 77 | 139 | 193 | 1.09e-11 | 65.1 |
| Msa1369750 | AT5G59570.1 | 53.571 | 56 | 25 | 1 | 22 | 77 | 139 | 193 | 1.09e-11 | 65.1 |
| Msa1369750 | AT4G37180.2 | 54.237 | 59 | 27 | 0 | 19 | 77 | 212 | 270 | 1.20e-11 | 65.5 |
| Msa1369750 | AT1G68670.1 | 59.184 | 49 | 20 | 0 | 29 | 77 | 220 | 268 | 2.12e-11 | 64.7 |
| Msa1369750 | AT5G58080.1 | 50.000 | 72 | 30 | 2 | 6 | 77 | 181 | 246 | 4.67e-11 | 64.3 |
| Msa1369750 | AT1G13300.1 | 46.479 | 71 | 32 | 1 | 7 | 77 | 170 | 234 | 4.83e-11 | 63.5 |
| Msa1369750 | AT3G46640.2 | 52.727 | 55 | 25 | 1 | 23 | 77 | 143 | 196 | 6.61e-11 | 63.2 |
| Msa1369750 | AT3G46640.1 | 52.727 | 55 | 25 | 1 | 23 | 77 | 143 | 196 | 6.61e-11 | 63.2 |
| Msa1369750 | AT3G46640.3 | 45.333 | 75 | 40 | 1 | 3 | 77 | 123 | 196 | 8.07e-11 | 62.8 |
Find 91 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTTTGCTACCAGATTT+TGG | 0.184199 | tig0018895:+26149 | Msa1369750:CDS |
| CCTGAGAGAAATCAGATTCT+TGG | 0.196675 | tig0018895:-26202 | Msa1369750:intergenic |
| TAAACTTGTTCTTCAGTTGA+TGG | 0.274648 | tig0018895:+24981 | Msa1369750:CDS |
| AGAAGCATGAGAGGTGAATT+AGG | 0.294301 | tig0018895:+25138 | Msa1369750:CDS |
| ATCTGGTAGCAAAGTTGAAT+TGG | 0.294548 | tig0018895:-26144 | Msa1369750:intergenic |
| AGCCCTTCATGGTCAATTAA+TGG | 0.300532 | tig0018895:+27622 | Msa1369750:CDS |
| GAGAGAGGGGAATAAGTATA+AGG | 0.307194 | tig0018895:-24508 | Msa1369750:intergenic |
| GACAAGTAATGCTTCTTATT+CGG | 0.316581 | tig0018895:+27738 | Msa1369750:CDS |
| GGAAGAGAAGGAGGAGGATC+AGG | 0.336536 | tig0018895:+24750 | Msa1369750:CDS |
| TCCCCTCTCTCTCTCCCAGC+TGG | 0.351405 | tig0018895:+24520 | Msa1369750:five_prime_UTR |
| GAATCTGATTCTTCTTTCAT+TGG | 0.354755 | tig0018895:+25702 | Msa1369750:CDS |
| CAAGACATTGGTTTCTATGT+TGG | 0.368948 | tig0018895:-25611 | Msa1369750:intergenic |
| AGAGCTCTGAAAATTCCTTT+AGG | 0.369266 | tig0018895:-24453 | Msa1369750:intergenic |
| ACAGTAACAACTTCTCAAAA+AGG | 0.375282 | tig0018895:+25727 | Msa1369750:CDS |
| AACAAATATTCCAACCCTCT+TGG | 0.376468 | tig0018895:-24694 | Msa1369750:intergenic |
| AAGACATTGGTTTCTATGTT+GGG | 0.380947 | tig0018895:-25610 | Msa1369750:intergenic |
| GCAGAACAAGAAAGGAATAA+AGG | 0.382336 | tig0018895:+26079 | Msa1369750:CDS |
| ACCCATCAGGACCAGGGTTA+GGG | 0.390120 | tig0018895:-27817 | Msa1369750:intergenic |
| GACCTATCTTTAGCCATTTG+TGG | 0.393044 | tig0018895:+27880 | Msa1369750:CDS |
| AACCCATCAGGACCAGGGTT+AGG | 0.394026 | tig0018895:-27818 | Msa1369750:intergenic |
| ATCAACTGAAGAACAAGTTT+AGG | 0.398456 | tig0018895:-24979 | Msa1369750:intergenic |
| ATCAAATCAATTGCCACAAA+TGG | 0.410193 | tig0018895:-27912 | Msa1369750:intergenic |
| CTTTAGGACATTGGTGTCAC+TGG | 0.428624 | tig0018895:-24437 | Msa1369750:intergenic |
| ACAAAGCAACGATGAAGTTC+AGG | 0.428827 | tig0018895:-24825 | Msa1369750:intergenic |
| CTGCAGATCACCCATGGTAT+TGG | 0.429020 | tig0018895:-26051 | Msa1369750:intergenic |
| ACACGTCAAGAGCCATCTTC+AGG | 0.432180 | tig0018895:+25026 | Msa1369750:CDS |
| GTGAGGTTTATGCCAAAATC+TGG | 0.438737 | tig0018895:-26161 | Msa1369750:intergenic |
| ATGACAGAAAGAGCCCTTCA+TGG | 0.449662 | tig0018895:+27611 | Msa1369750:CDS |
| TGAAAATTCCTTTAGGACAT+TGG | 0.453439 | tig0018895:-24446 | Msa1369750:intergenic |
| CCCCTAACCCTGGTCCTGAT+GGG | 0.456881 | tig0018895:+27797 | Msa1369750:CDS |
| AGTAGTAGTTGTGGAAGAGA+AGG | 0.462888 | tig0018895:+24738 | Msa1369750:CDS |
| GTTCATGCTATTCAAACCCT+TGG | 0.466593 | tig0018895:+24846 | Msa1369750:CDS |
| TAGAAAATGAGTAGTAGTTG+TGG | 0.467194 | tig0018895:+24729 | Msa1369750:exon |
| CATGGTATTGGCATTGGCAT+TGG | 0.470956 | tig0018895:-26039 | Msa1369750:intergenic |
| TCTGGTAGCAAAGTTGAATT+GGG | 0.475643 | tig0018895:-26143 | Msa1369750:intergenic |
| CTGCTAAACCCATCAGGACC+AGG | 0.477057 | tig0018895:-27824 | Msa1369750:intergenic |
| CATCATGCTCTTCAAGACAT+TGG | 0.479410 | tig0018895:-25623 | Msa1369750:intergenic |
| TGCCACAAATGGCTAAAGAT+AGG | 0.479487 | tig0018895:-27901 | Msa1369750:intergenic |
| AGTTGTGGAAGAGAAGGAGG+AGG | 0.483366 | tig0018895:+24744 | Msa1369750:CDS |
| AAGAAAGAGAATAAAGAAAG+AGG | 0.485354 | tig0018895:-27983 | Msa1369750:intergenic |
| AGTAGTTGTGGAAGAGAAGG+AGG | 0.488905 | tig0018895:+24741 | Msa1369750:CDS |
| CCAAGAATCTGATTTCTCTC+AGG | 0.491648 | tig0018895:+26202 | Msa1369750:CDS |
| GCATTACTTGTCTGAGGTGA+AGG | 0.495350 | tig0018895:-27746 | Msa1369750:intergenic |
| TTCAGTTGATGGATATCAAA+GGG | 0.496688 | tig0018895:+24992 | Msa1369750:CDS |
| CATGCTATTCAAACCCTTGG+AGG | 0.504028 | tig0018895:+24849 | Msa1369750:CDS |
| TTGTAGCTGCTAAACCCATC+AGG | 0.505555 | tig0018895:-27830 | Msa1369750:intergenic |
| AGAGCACATGTAGAAGTTGA+AGG | 0.510912 | tig0018895:+27661 | Msa1369750:CDS |
| CAGCAGCTGCAGAACAAGAA+AGG | 0.510940 | tig0018895:+26071 | Msa1369750:CDS |
| CAGTGACACCAATGTCCTAA+AGG | 0.511162 | tig0018895:+24438 | Msa1369750:five_prime_UTR |
| AATTGCCTCACTGATTTCAC+TGG | 0.511384 | tig0018895:-27780 | Msa1369750:intergenic |
| TATGGAAAACAGAATCCAGC+TGG | 0.521590 | tig0018895:-24535 | Msa1369750:intergenic |
| CATGTAGAAGTTGAAGGAGT+AGG | 0.522933 | tig0018895:+27667 | Msa1369750:CDS |
| AATGAAAATGAACCTGAAGA+TGG | 0.525028 | tig0018895:-25038 | Msa1369750:intergenic |
| AATCCAGCTGGGAGAGAGAG+AGG | 0.530513 | tig0018895:-24523 | Msa1369750:intergenic |
| CAAAAGTCCCTCGTTTGAGA+TGG | 0.534114 | tig0018895:+24799 | Msa1369750:CDS |
| ATCACCCATGGTATTGGCAT+TGG | 0.534408 | tig0018895:-26045 | Msa1369750:intergenic |
| TTAGAGATTTGAAAGAAGTG+AGG | 0.544979 | tig0018895:-26178 | Msa1369750:intergenic |
| TCCAGCTGGGAGAGAGAGAG+GGG | 0.545938 | tig0018895:-24521 | Msa1369750:intergenic |
| TTATATTTATACAAAGAAGA+GGG | 0.546172 | tig0018895:-24588 | Msa1369750:intergenic |
| TATCATCTACTGTGAATGAA+AGG | 0.549767 | tig0018895:+27848 | Msa1369750:CDS |
| CTTCAGTTGATGGATATCAA+AGG | 0.552892 | tig0018895:+24991 | Msa1369750:CDS |
| TGTCTTGAAGAGCATGATGA+TGG | 0.559094 | tig0018895:+25627 | Msa1369750:CDS |
| GTAATATCTGATCCTTCTGA+TGG | 0.563151 | tig0018895:-24415 | Msa1369750:intergenic |
| TTTATATTTATACAAAGAAG+AGG | 0.563610 | tig0018895:-24589 | Msa1369750:intergenic |
| ATCCAGCTGGGAGAGAGAGA+GGG | 0.567224 | tig0018895:-24522 | Msa1369750:intergenic |
| TGATGGGTTTAGCAGCTACA+AGG | 0.568771 | tig0018895:+27813 | Msa1369750:CDS |
| CCCATCAGGACCAGGGTTAG+GGG | 0.569771 | tig0018895:-27816 | Msa1369750:intergenic |
| GAGAGAAAATGAAAAGACGA+AGG | 0.571611 | tig0018895:-24486 | Msa1369750:intergenic |
| GTCCATTAATTGACCATGAA+GGG | 0.573791 | tig0018895:-27643 | Msa1369750:intergenic |
| AGTCCATTAATTGACCATGA+AGG | 0.574633 | tig0018895:-27644 | Msa1369750:intergenic |
| CAGCTGCTGCAGATCACCCA+TGG | 0.582133 | tig0018895:-26057 | Msa1369750:intergenic |
| GTAGAAGTTGAAGGAGTAGG+AGG | 0.587674 | tig0018895:+27670 | Msa1369750:CDS |
| ATGTTGAGCATTCTTTGATG+AGG | 0.590128 | tig0018895:+25676 | Msa1369750:CDS |
| CAGATGTATAGAAGCATGAG+AGG | 0.614112 | tig0018895:+25129 | Msa1369750:intron |
| CTTACTATGATGACCTCCAA+GGG | 0.614845 | tig0018895:-24862 | Msa1369750:intergenic |
| AGAGAAGGAGGAGGATCAGG+AGG | 0.615008 | tig0018895:+24753 | Msa1369750:CDS |
| CAGGAGTCCATCTCAAACGA+GGG | 0.615814 | tig0018895:-24806 | Msa1369750:intergenic |
| TGCTAAACCCATCAGGACCA+GGG | 0.616115 | tig0018895:-27823 | Msa1369750:intergenic |
| ACTTACTATGATGACCTCCA+AGG | 0.620124 | tig0018895:-24863 | Msa1369750:intergenic |
| TAAGAAGCATTACTTGTCTG+AGG | 0.629009 | tig0018895:-27752 | Msa1369750:intergenic |
| CCATCAGGACCAGGGTTAGG+GGG | 0.646226 | tig0018895:-27815 | Msa1369750:intergenic |
| CAATGCCAATGCCAATACCA+TGG | 0.649873 | tig0018895:+26040 | Msa1369750:CDS |
| ACATAGTCATAAAAGCAGTA+CGG | 0.651015 | tig0018895:-26005 | None:intergenic |
| GTACAGCAACTACCATCAGA+AGG | 0.658105 | tig0018895:+24403 | None:intergenic |
| AGAGGTGAATTAGGAAGACA+AGG | 0.660553 | tig0018895:+25147 | Msa1369750:CDS |
| ATGGAAAACAGAATCCAGCT+GGG | 0.660915 | tig0018895:-24534 | Msa1369750:intergenic |
| TCAGGAGTCCATCTCAAACG+AGG | 0.669853 | tig0018895:-24807 | Msa1369750:intergenic |
| AATGCCAATGCCAATACCAT+GGG | 0.680737 | tig0018895:+26041 | Msa1369750:CDS |
| GGTAGCAAAGTTGAATTGGG+TGG | 0.692739 | tig0018895:-26140 | Msa1369750:intergenic |
| GAGGATCAGGAGGAGCAGTG+AGG | 0.714959 | tig0018895:+24763 | Msa1369750:CDS |
| TTCGGCCAGTGAAATCAGTG+AGG | 0.751752 | tig0018895:+27756 | Msa1369750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGAAAATATTGTATAAA+AGG | - | tig0018895:25562-25581 | Msa1369750:intergenic | 10.0% |
| !! | AACATTAAAAAAAAAGTTAT+TGG | + | tig0018895:25803-25822 | Msa1369750:intron | 10.0% |
| !! | TTATATTTATACAAAGAAGA+GGG | - | tig0018895:24591-24610 | Msa1369750:intergenic | 15.0% |
| !! | TTTATATTTATACAAAGAAG+AGG | - | tig0018895:24592-24611 | Msa1369750:intergenic | 15.0% |
| !!! | ATATTGTATAAAAGGTATAA+TGG | - | tig0018895:25554-25573 | Msa1369750:intergenic | 15.0% |
| !! | AAAAAAAAGTTATTGGTATT+TGG | + | tig0018895:25810-25829 | Msa1369750:intron | 15.0% |
| !! | CAAAAAATAAGTTAAAGTAA+TGG | - | tig0018895:25860-25879 | Msa1369750:intergenic | 15.0% |
| !!! | AATATTTAAACCTTTCATTT+TGG | + | tig0018895:26608-26627 | Msa1369750:intron | 15.0% |
| !!! | ATATTTAAACCTTTCATTTT+GGG | + | tig0018895:26609-26628 | Msa1369750:intron | 15.0% |
| !!! | ATAATGGATAATATTTTTAC+TGG | + | tig0018895:27475-27494 | Msa1369750:intron | 15.0% |
| !!! | TCTATTATTTTTTCTTCTCT+TGG | + | tig0018895:25280-25299 | Msa1369750:intron | 20.0% |
| !!! | TTTTTTGAAATAAGTCCTTA+TGG | + | tig0018895:25873-25892 | Msa1369750:intron | 20.0% |
| !!! | TTATCTCTTACTACTTTTAT+TGG | + | tig0018895:26283-26302 | Msa1369750:intron | 20.0% |
| !!! | TTTTTTAGTTAACCATCTTT+TGG | + | tig0018895:26740-26759 | Msa1369750:intron | 20.0% |
| !! | TTCTAATGCAAACATTTAAT+CGG | + | tig0018895:26985-27004 | Msa1369750:intron | 20.0% |
| !!! | AAACAAACCATGATAAATTT+TGG | - | tig0018895:27110-27129 | Msa1369750:intergenic | 20.0% |
| !! | TGTTACTACTAAAAATTGAA+TGG | - | tig0018895:27374-27393 | Msa1369750:intergenic | 20.0% |
| !! | TACAAAAAAGATTGTTTACT+TGG | - | tig0018895:27431-27450 | Msa1369750:intergenic | 20.0% |
| !!! | TCTTAATTTGTTTTTCCAAG+AGG | + | tig0018895:24679-24698 | Msa1369750:five_prime_UTR | 25.0% |
| !!! | CTTAATTTGTTTTTCCAAGA+GGG | + | tig0018895:24680-24699 | Msa1369750:five_prime_UTR | 25.0% |
| !!! | TTACTTTGTATTTTTGACAG+AGG | + | tig0018895:24951-24970 | Msa1369750:intron | 25.0% |
| !! | GATTTTCTTTATGCATAACA+AGG | + | tig0018895:25337-25356 | Msa1369750:intron | 25.0% |
| ! | ATAATCCAAATCAAACCATA+AGG | - | tig0018895:25891-25910 | Msa1369750:intergenic | 25.0% |
| ! | TAGTAAGAGATAAAGAAAGT+TGG | - | tig0018895:26276-26295 | Msa1369750:intergenic | 25.0% |
| !! | TTTTATTGGAGGAATCTATT+TGG | + | tig0018895:26297-26316 | Msa1369750:intron | 25.0% |
| ! | AAGTTAGCAGTATTAGTAAA+AGG | + | tig0018895:26359-26378 | Msa1369750:intron | 25.0% |
| ! | AATTTATCTGTCAATGCTAT+AGG | + | tig0018895:26471-26490 | Msa1369750:intron | 25.0% |
| ! | GAAAGGTTTAAATATTGAAC+AGG | - | tig0018895:26604-26623 | Msa1369750:intergenic | 25.0% |
| !! | AGTATAGTCTTGAAATGAAA+AGG | - | tig0018895:26693-26712 | Msa1369750:intergenic | 25.0% |
| ! | TCTAATGCAAACATTTAATC+GGG | + | tig0018895:26986-27005 | Msa1369750:intron | 25.0% |
| ! | AAAAAATCTAACCACTTCTT+AGG | - | tig0018895:27013-27032 | Msa1369750:intergenic | 25.0% |
| !!! | AAGAAGTGGTTAGATTTTTT+TGG | + | tig0018895:27013-27032 | Msa1369750:intron | 25.0% |
| ! | CTAACCATTATACTCTATAT+AGG | - | tig0018895:27051-27070 | Msa1369750:intergenic | 25.0% |
| ! | CTATATAGAGTATAATGGTT+AGG | + | tig0018895:27049-27068 | Msa1369750:intron | 25.0% |
| ! | TCATTGTCCAAAATTTATCA+TGG | + | tig0018895:27100-27119 | Msa1369750:intron | 25.0% |
| ! | AAAGTCGTATTCCAATAATT+AGG | - | tig0018895:27232-27251 | Msa1369750:intergenic | 25.0% |
| !! | TTTTAGTAGTAACATGTACA+TGG | + | tig0018895:27380-27399 | Msa1369750:intron | 25.0% |
| ! | AAAAAGATTGTTTACTTGGA+TGG | - | tig0018895:27427-27446 | Msa1369750:intergenic | 25.0% |
| ! | GACAAATTTATTTACATGTG+TGG | + | tig0018895:27543-27562 | Msa1369750:intron | 25.0% |
| !! | TGTGTAACATCTTTTACTTT+AGG | + | tig0018895:27926-27945 | Msa1369750:three_prime_UTR | 25.0% |
| ! | AAGAAAGAGAATAAAGAAAG+AGG | - | tig0018895:27967-27986 | Msa1369750:intergenic | 25.0% |
| !! | TGAAAATTCCTTTAGGACAT+TGG | - | tig0018895:24449-24468 | Msa1369750:intergenic | 30.0% |
| TAGAAAATGAGTAGTAGTTG+TGG | + | tig0018895:24729-24748 | Msa1369750:exon | 30.0% | |
| ATCAACTGAAGAACAAGTTT+AGG | - | tig0018895:24982-25001 | Msa1369750:intergenic | 30.0% | |
| ! | TAAACTTGTTCTTCAGTTGA+TGG | + | tig0018895:24981-25000 | Msa1369750:CDS | 30.0% |
| !! | TTCAGTTGATGGATATCAAA+GGG | + | tig0018895:24992-25011 | Msa1369750:CDS | 30.0% |
| AATGAAAATGAACCTGAAGA+TGG | - | tig0018895:25041-25060 | Msa1369750:intergenic | 30.0% | |
| ACATCTGGTTATCATAAAGA+AGG | - | tig0018895:25116-25135 | Msa1369750:intergenic | 30.0% | |
| ! | AATCCACAAGGGAATTATTT+TGG | - | tig0018895:25321-25340 | Msa1369750:intergenic | 30.0% |
| TGCATAAAGAAAATCCACAA+GGG | - | tig0018895:25332-25351 | Msa1369750:intergenic | 30.0% | |
| ATGCATAAAGAAAATCCACA+AGG | - | tig0018895:25333-25352 | Msa1369750:intergenic | 30.0% | |
| AGACTACAATGCTCATTTAT+TGG | + | tig0018895:25367-25386 | Msa1369750:intron | 30.0% | |
| TCCTTGTAGATTTCTTCTAA+TGG | + | tig0018895:25445-25464 | Msa1369750:intron | 30.0% | |
| ACCATTAGAAGAAATCTACA+AGG | - | tig0018895:25449-25468 | Msa1369750:intergenic | 30.0% | |
| TGTAGCAAACATAATAGTAG+TGG | - | tig0018895:25496-25515 | Msa1369750:intergenic | 30.0% | |
| ! | TCTAATGAATGTGTTTTCTC+AGG | + | tig0018895:25576-25595 | Msa1369750:intron | 30.0% |
| !! | AAGACATTGGTTTCTATGTT+GGG | - | tig0018895:25613-25632 | Msa1369750:intergenic | 30.0% |
| GAATCTGATTCTTCTTTCAT+TGG | + | tig0018895:25702-25721 | Msa1369750:CDS | 30.0% | |
| ACAGTAACAACTTCTCAAAA+AGG | + | tig0018895:25727-25746 | Msa1369750:CDS | 30.0% | |
| TAAGTCCTTATGGTTTGATT+TGG | + | tig0018895:25883-25902 | Msa1369750:intron | 30.0% | |
| ACATAGTCATAAAAGCAGTA+CGG | - | tig0018895:26008-26027 | Msa1369750:intergenic | 30.0% | |
| TTAGAGATTTGAAAGAAGTG+AGG | - | tig0018895:26181-26200 | Msa1369750:intergenic | 30.0% | |
| !! | TCTCTTACTACTTTTATTGG+AGG | + | tig0018895:26286-26305 | Msa1369750:intron | 30.0% |
| !!! | TGGTAGCTGTTTTAATTTCT+AGG | + | tig0018895:26419-26438 | Msa1369750:intron | 30.0% |
| !!! | TAGCTGTTTTAATTTCTAGG+TGG | + | tig0018895:26422-26441 | Msa1369750:intron | 30.0% |
| !! | TGAACAAAAGTGAAAGTGTT+AGG | - | tig0018895:26563-26582 | Msa1369750:intergenic | 30.0% |
| CTAATGCAAACATTTAATCG+GGG | + | tig0018895:26987-27006 | Msa1369750:intron | 30.0% | |
| ACGACCTATATAGAGTATAA+TGG | + | tig0018895:27044-27063 | Msa1369750:intron | 30.0% | |
| !!! | TGGAATACGACTTTTTCATT+TGG | + | tig0018895:27238-27257 | Msa1369750:intron | 30.0% |
| ! | GTCCTTTTGTGCAATTTATA+TGG | + | tig0018895:27273-27292 | Msa1369750:intron | 30.0% |
| GACCATATAAATTGCACAAA+AGG | - | tig0018895:27278-27297 | Msa1369750:intergenic | 30.0% | |
| ACCACTATAGGAACTTATAA+TGG | + | tig0018895:27459-27478 | Msa1369750:intron | 30.0% | |
| TCCATTATAAGTTCCTATAG+TGG | - | tig0018895:27463-27482 | Msa1369750:intergenic | 30.0% | |
| ACTGGCAACAACAATTATTA+TGG | + | tig0018895:27493-27512 | Msa1369750:intron | 30.0% | |
| GACAAGTAATGCTTCTTATT+CGG | + | tig0018895:27738-27757 | Msa1369750:CDS | 30.0% | |
| TATCATCTACTGTGAATGAA+AGG | + | tig0018895:27848-27867 | Msa1369750:CDS | 30.0% | |
| ATCAAATCAATTGCCACAAA+TGG | - | tig0018895:27896-27915 | Msa1369750:intergenic | 30.0% | |
| GTAATATCTGATCCTTCTGA+TGG | - | tig0018895:24418-24437 | Msa1357540:intergenic | 35.0% | |
| !! | AGAGCTCTGAAAATTCCTTT+AGG | - | tig0018895:24456-24475 | Msa1369750:intergenic | 35.0% |
| GAGAGAAAATGAAAAGACGA+AGG | - | tig0018895:24489-24508 | Msa1369750:intergenic | 35.0% | |
| !! | ATTTGTTTTTCCAAGAGGGT+TGG | + | tig0018895:24684-24703 | Msa1369750:five_prime_UTR | 35.0% |
| AACAAATATTCCAACCCTCT+TGG | - | tig0018895:24697-24716 | Msa1369750:intergenic | 35.0% | |
| !! | CTTCAGTTGATGGATATCAA+AGG | + | tig0018895:24991-25010 | Msa1369750:CDS | 35.0% |
| GTTCCAAAATAATTCCCTTG+TGG | + | tig0018895:25315-25334 | Msa1369750:intron | 35.0% | |
| GGCATCAACTAAATGCAAAA+GGG | - | tig0018895:25393-25412 | Msa1369750:intergenic | 35.0% | |
| TGGCATCAACTAAATGCAAA+AGG | - | tig0018895:25394-25413 | Msa1369750:intergenic | 35.0% | |
| !! | TTAGTCTTCCTACACTGTTT+TGG | - | tig0018895:25414-25433 | Msa1369750:intergenic | 35.0% |
| ! | ATGAATGTGTTTTCTCAGGT+AGG | + | tig0018895:25580-25599 | Msa1369750:intron | 35.0% |
| !! | CAAGACATTGGTTTCTATGT+TGG | - | tig0018895:25614-25633 | Msa1369750:intergenic | 35.0% |
| ATGTTGAGCATTCTTTGATG+AGG | + | tig0018895:25676-25695 | Msa1369750:CDS | 35.0% | |
| GCAGAACAAGAAAGGAATAA+AGG | + | tig0018895:26079-26098 | Msa1369750:CDS | 35.0% | |
| !! | ATGAACAACAGTTTTGTGCA+TGG | + | tig0018895:26102-26121 | Msa1369750:CDS | 35.0% |
| TCTGGTAGCAAAGTTGAATT+GGG | - | tig0018895:26146-26165 | Msa1369750:intergenic | 35.0% | |
| ATCTGGTAGCAAAGTTGAAT+TGG | - | tig0018895:26147-26166 | Msa1369750:intergenic | 35.0% | |
| ! | TCAACTTTGCTACCAGATTT+TGG | + | tig0018895:26149-26168 | Msa1369750:CDS | 35.0% |
| GCATTTCAACTTCTACACTA+TGG | + | tig0018895:26399-26418 | Msa1369750:intron | 35.0% | |
| !!! | CTGTTTTAATTTCTAGGTGG+TGG | + | tig0018895:26425-26444 | Msa1369750:intron | 35.0% |
| ATATAGCTGCTTAAGAACCT+AGG | + | tig0018895:26494-26513 | Msa1369750:intron | 35.0% | |
| ATGGCTATAGGTATAGTAGT+AGG | + | tig0018895:26525-26544 | Msa1369750:intron | 35.0% | |
| AGTCTTGACTTACCAAAAGA+TGG | - | tig0018895:26755-26774 | Msa1369750:intergenic | 35.0% | |
| ! | TTTTGGTAAGTCAAGACTGT+GGG | + | tig0018895:26757-26776 | Msa1369750:intron | 35.0% |
| ! | TTTTCACAACAGTAGAAGCA+AGG | - | tig0018895:26786-26805 | Msa1369750:intergenic | 35.0% |
| GTTTGTTCCATTATTCTCCA+CGG | + | tig0018895:26874-26893 | Msa1369750:intron | 35.0% | |
| ! | TTTTCAAAAAACCAACTCCG+TGG | - | tig0018895:26894-26913 | Msa1369750:intergenic | 35.0% |
| ACTCTATATAGGTCGTACAA+GGG | - | tig0018895:27040-27059 | Msa1369750:intergenic | 35.0% | |
| TACTCTATATAGGTCGTACA+AGG | - | tig0018895:27041-27060 | Msa1369750:intergenic | 35.0% | |
| AAGTCACAATATGAGCCTTT+CGG | - | tig0018895:27142-27161 | Msa1369750:intergenic | 35.0% | |
| CAGTGAATGTCAAATAAAGG+AGG | - | tig0018895:27190-27209 | Msa1369750:intergenic | 35.0% | |
| GAGCAGTGAATGTCAAATAA+AGG | - | tig0018895:27193-27212 | Msa1369750:intergenic | 35.0% | |
| CGTATTCCAATAATTAGGCA+AGG | - | tig0018895:27227-27246 | Msa1369750:intergenic | 35.0% | |
| ! | ACTTCTTTTGAATGTGCATG+TGG | + | tig0018895:27301-27320 | Msa1369750:intron | 35.0% |
| TGTATTTGACTCACCACTAT+AGG | + | tig0018895:27447-27466 | Msa1369750:intron | 35.0% | |
| GGACAAACACACTTAACAAA+TGG | - | tig0018895:27569-27588 | Msa1369750:intergenic | 35.0% | |
| ! | TACATTACTAGCCTGTACAA+GGG | - | tig0018895:27590-27609 | Msa1369750:intergenic | 35.0% |
| ! | TTACATTACTAGCCTGTACA+AGG | - | tig0018895:27591-27610 | Msa1369750:intergenic | 35.0% |
| GTCCATTAATTGACCATGAA+GGG | - | tig0018895:27627-27646 | Msa1369750:intergenic | 35.0% | |
| AGTCCATTAATTGACCATGA+AGG | - | tig0018895:27628-27647 | Msa1369750:intergenic | 35.0% | |
| !! | TAAGAAGCATTACTTGTCTG+AGG | - | tig0018895:27736-27755 | Msa1369750:intergenic | 35.0% |
| GAGAGAGGGGAATAAGTATA+AGG | - | tig0018895:24511-24530 | Msa1369750:intergenic | 40.0% | |
| ATGGAAAACAGAATCCAGCT+GGG | - | tig0018895:24537-24556 | Msa1369750:intergenic | 40.0% | |
| TATGGAAAACAGAATCCAGC+TGG | - | tig0018895:24538-24557 | Msa1369750:intergenic | 40.0% | |
| ! | AGCTGGATTCTGTTTTCCAT+AGG | + | tig0018895:24537-24556 | Msa1369750:five_prime_UTR | 40.0% |
| ! | GCTGGATTCTGTTTTCCATA+GGG | + | tig0018895:24538-24557 | Msa1369750:five_prime_UTR | 40.0% |
| !! | ATAGTGCTTTTTGCACCCTA+TGG | - | tig0018895:24556-24575 | Msa1369750:intergenic | 40.0% |
| AGTAGTAGTTGTGGAAGAGA+AGG | + | tig0018895:24738-24757 | Msa1369750:CDS | 40.0% | |
| ACAAAGCAACGATGAAGTTC+AGG | - | tig0018895:24828-24847 | Msa1369750:intergenic | 40.0% | |
| GTTCATGCTATTCAAACCCT+TGG | + | tig0018895:24846-24865 | Msa1369750:CDS | 40.0% | |
| CTTACTATGATGACCTCCAA+GGG | - | tig0018895:24865-24884 | Msa1369750:intergenic | 40.0% | |
| ACTTACTATGATGACCTCCA+AGG | - | tig0018895:24866-24885 | Msa1369750:intergenic | 40.0% | |
| CTCTCATGCTTCTATACATC+TGG | - | tig0018895:25131-25150 | Msa1369750:intergenic | 40.0% | |
| ! | CAGATGTATAGAAGCATGAG+AGG | + | tig0018895:25129-25148 | Msa1369750:intron | 40.0% |
| ! | AGAAGCATGAGAGGTGAATT+AGG | + | tig0018895:25138-25157 | Msa1369750:CDS | 40.0% |
| AGAGGTGAATTAGGAAGACA+AGG | + | tig0018895:25147-25166 | Msa1369750:CDS | 40.0% | |
| ! | AGTTGATGCCAAAACAGTGT+AGG | + | tig0018895:25403-25422 | Msa1369750:intron | 40.0% |
| CATCATGCTCTTCAAGACAT+TGG | - | tig0018895:25626-25645 | Msa1369750:intergenic | 40.0% | |
| ! | TGTCTTGAAGAGCATGATGA+TGG | + | tig0018895:25627-25646 | Msa1369750:CDS | 40.0% |
| AATGCCAATGCCAATACCAT+GGG | + | tig0018895:26041-26060 | Msa1369750:CDS | 40.0% | |
| GTGAGGTTTATGCCAAAATC+TGG | - | tig0018895:26164-26183 | Msa1369750:intergenic | 40.0% | |
| CCTGAGAGAAATCAGATTCT+TGG | - | tig0018895:26205-26224 | Msa1369750:intergenic | 40.0% | |
| CCAAGAATCTGATTTCTCTC+AGG | + | tig0018895:26202-26221 | Msa1369750:CDS | 40.0% | |
| !!! | TGGAGTGTGGTATTGGTTTT+GGG | + | tig0018895:26445-26464 | Msa1369750:intron | 40.0% |
| AACGTGGATCCCAAAATGAA+AGG | - | tig0018895:26621-26640 | Msa1369750:intergenic | 40.0% | |
| GAAAAGAGAATGCATTGCAC+GGG | - | tig0018895:26671-26690 | Msa1369750:intergenic | 40.0% | |
| GGAAAAGAGAATGCATTGCA+CGG | - | tig0018895:26672-26691 | Msa1369750:intergenic | 40.0% | |
| ! | CTTTTGGTAAGTCAAGACTG+TGG | + | tig0018895:26756-26775 | Msa1369750:intron | 40.0% |
| TTTGGTAAGTCAAGACTGTG+GGG | + | tig0018895:26758-26777 | Msa1369750:intron | 40.0% | |
| TTCATTCTGCGTTTCAAACG+TGG | - | tig0018895:26917-26936 | Msa1369750:intergenic | 40.0% | |
| TTGTTTGCATTGTGACCGAA+AGG | + | tig0018895:27124-27143 | Msa1369750:intron | 40.0% | |
| AGCCCTTCATGGTCAATTAA+TGG | + | tig0018895:27622-27641 | Msa1369750:CDS | 40.0% | |
| AGAGCACATGTAGAAGTTGA+AGG | + | tig0018895:27661-27680 | Msa1369750:CDS | 40.0% | |
| CATGTAGAAGTTGAAGGAGT+AGG | + | tig0018895:27667-27686 | Msa1369750:CDS | 40.0% | |
| !! | AATTGCCTCACTGATTTCAC+TGG | - | tig0018895:27764-27783 | Msa1369750:intergenic | 40.0% |
| GACCTATCTTTAGCCATTTG+TGG | + | tig0018895:27880-27899 | Msa1369750:CDS | 40.0% | |
| TGCCACAAATGGCTAAAGAT+AGG | - | tig0018895:27885-27904 | Msa1369750:intergenic | 40.0% | |
| !! | CTTTAGGACATTGGTGTCAC+TGG | - | tig0018895:24440-24459 | Msa1357540:intergenic | 45.0% |
| CAGTGACACCAATGTCCTAA+AGG | + | tig0018895:24438-24457 | Msa1369750:five_prime_UTR | 45.0% | |
| AGTAGTTGTGGAAGAGAAGG+AGG | + | tig0018895:24741-24760 | Msa1369750:CDS | 45.0% | |
| CAAAAGTCCCTCGTTTGAGA+TGG | + | tig0018895:24799-24818 | Msa1369750:CDS | 45.0% | |
| CATGCTATTCAAACCCTTGG+AGG | + | tig0018895:24849-24868 | Msa1369750:CDS | 45.0% | |
| !! | CATGGTATTGGCATTGGCAT+TGG | - | tig0018895:26042-26061 | Msa1369750:intergenic | 45.0% |
| CAATGCCAATGCCAATACCA+TGG | + | tig0018895:26040-26059 | Msa1369750:CDS | 45.0% | |
| !! | ATCACCCATGGTATTGGCAT+TGG | - | tig0018895:26048-26067 | Msa1369750:intergenic | 45.0% |
| !! | AACAGTTTTGTGCATGGCAG+AGG | + | tig0018895:26108-26127 | Msa1369750:CDS | 45.0% |
| GGTAGCAAAGTTGAATTGGG+TGG | - | tig0018895:26143-26162 | Msa1369750:intergenic | 45.0% | |
| !! | AATTTCTAGGTGGTGGAGTG+TGG | + | tig0018895:26432-26451 | Msa1369750:intron | 45.0% |
| !!! | GTGGAGTGTGGTATTGGTTT+TGG | + | tig0018895:26444-26463 | Msa1369750:intron | 45.0% |
| CTGCTTAAGAACCTAGGCTA+TGG | + | tig0018895:26500-26519 | Msa1369750:intron | 45.0% | |
| AAGAACCTAGGCTATGGCTA+TGG | + | tig0018895:26506-26525 | Msa1369750:intron | 45.0% | |
| TATAGCCATAGCCATAGCCT+AGG | - | tig0018895:26514-26533 | Msa1369750:intergenic | 45.0% | |
| TAGGCTATGGCTATGGCTAT+AGG | + | tig0018895:26513-26532 | Msa1369750:intron | 45.0% | |
| !! | CCAACGGTTTGGTATTAACG+TGG | - | tig0018895:26637-26656 | Msa1369750:intergenic | 45.0% |
| CCACGTTAATACCAAACCGT+TGG | + | tig0018895:26634-26653 | Msa1369750:intron | 45.0% | |
| CATCTGAGAAACCAACGGTT+TGG | - | tig0018895:26648-26667 | Msa1369750:intergenic | 45.0% | |
| TCCATTATTCTCCACGGAGT+TGG | + | tig0018895:26880-26899 | Msa1369750:intron | 45.0% | |
| ACCAACTCCGTGGAGAATAA+TGG | - | tig0018895:26884-26903 | Msa1369750:intergenic | 45.0% | |
| TTTAATCGGGGCCTAAGAAG+TGG | + | tig0018895:26999-27018 | Msa1369750:intron | 45.0% | |
| CCAATAATTAGGCAAGGAGC+AGG | - | tig0018895:27221-27240 | Msa1369750:intergenic | 45.0% | |
| CCTGCTCCTTGCCTAATTAT+TGG | + | tig0018895:27218-27237 | Msa1369750:intron | 45.0% | |
| AGTGTGTTTGTCCCTTGTAC+AGG | + | tig0018895:27576-27595 | Msa1369750:intron | 45.0% | |
| ATGACAGAAAGAGCCCTTCA+TGG | + | tig0018895:27611-27630 | Msa1369750:CDS | 45.0% | |
| GTAGAAGTTGAAGGAGTAGG+AGG | + | tig0018895:27670-27689 | Msa1369750:CDS | 45.0% | |
| ! | GCATTACTTGTCTGAGGTGA+AGG | - | tig0018895:27730-27749 | Msa1369750:intergenic | 45.0% |
| TTGTAGCTGCTAAACCCATC+AGG | - | tig0018895:27814-27833 | Msa1369750:intergenic | 45.0% | |
| !! | TGATGGGTTTAGCAGCTACA+AGG | + | tig0018895:27813-27832 | Msa1369750:CDS | 45.0% |
| AGTTGTGGAAGAGAAGGAGG+AGG | + | tig0018895:24744-24763 | Msa1369750:CDS | 50.0% | |
| CAGGAGTCCATCTCAAACGA+GGG | - | tig0018895:24809-24828 | Msa1369750:intergenic | 50.0% | |
| TCAGGAGTCCATCTCAAACG+AGG | - | tig0018895:24810-24829 | Msa1369750:intergenic | 50.0% | |
| ACACGTCAAGAGCCATCTTC+AGG | + | tig0018895:25026-25045 | Msa1369750:CDS | 50.0% | |
| CTGCAGATCACCCATGGTAT+TGG | - | tig0018895:26054-26073 | Msa1369750:intergenic | 50.0% | |
| CAGCAGCTGCAGAACAAGAA+AGG | + | tig0018895:26071-26090 | Msa1369750:CDS | 50.0% | |
| !! | TAGGTGGTGGAGTGTGGTAT+TGG | + | tig0018895:26438-26457 | Msa1369750:intron | 50.0% |
| ACGGGCATCTGAGAAACCAA+CGG | - | tig0018895:26653-26672 | Msa1369750:intergenic | 50.0% | |
| TTCGGCCAGTGAAATCAGTG+AGG | + | tig0018895:27756-27775 | Msa1369750:CDS | 50.0% | |
| TGCTAAACCCATCAGGACCA+GGG | - | tig0018895:27807-27826 | Msa1369750:intergenic | 50.0% | |
| ATCCAGCTGGGAGAGAGAGA+GGG | - | tig0018895:24525-24544 | Msa1369750:intergenic | 55.0% | |
| AATCCAGCTGGGAGAGAGAG+AGG | - | tig0018895:24526-24545 | Msa1369750:intergenic | 55.0% | |
| GGAAGAGAAGGAGGAGGATC+AGG | + | tig0018895:24750-24769 | Msa1369750:CDS | 55.0% | |
| AGAGAAGGAGGAGGATCAGG+AGG | + | tig0018895:24753-24772 | Msa1369750:CDS | 55.0% | |
| ATTAGGCAAGGAGCAGGAGC+AGG | - | tig0018895:27215-27234 | Msa1369750:intergenic | 55.0% | |
| ACCCATCAGGACCAGGGTTA+GGG | - | tig0018895:27801-27820 | Msa1369750:intergenic | 55.0% | |
| AACCCATCAGGACCAGGGTT+AGG | - | tig0018895:27802-27821 | Msa1369750:intergenic | 55.0% | |
| CTGCTAAACCCATCAGGACC+AGG | - | tig0018895:27808-27827 | Msa1369750:intergenic | 55.0% | |
| TCCAGCTGGGAGAGAGAGAG+GGG | - | tig0018895:24524-24543 | Msa1369750:intergenic | 60.0% | |
| GAGGATCAGGAGGAGCAGTG+AGG | + | tig0018895:24763-24782 | Msa1369750:CDS | 60.0% | |
| CAGCTGCTGCAGATCACCCA+TGG | - | tig0018895:26060-26079 | Msa1369750:intergenic | 60.0% | |
| CCATCAGGACCAGGGTTAGG+GGG | - | tig0018895:27799-27818 | Msa1369750:intergenic | 60.0% | |
| CCCATCAGGACCAGGGTTAG+GGG | - | tig0018895:27800-27819 | Msa1369750:intergenic | 60.0% | |
| CCCCTAACCCTGGTCCTGAT+GGG | + | tig0018895:27797-27816 | Msa1369750:CDS | 60.0% | |
| TCCCCTCTCTCTCTCCCAGC+TGG | + | tig0018895:24520-24539 | Msa1369750:five_prime_UTR | 65.0% | |
| TGCTGTCCTCCCCCTAACCC+TGG | + | tig0018895:27787-27806 | Msa1369750:CDS | 65.0% | |
| TCAGGACCAGGGTTAGGGGG+AGG | - | tig0018895:27796-27815 | Msa1369750:intergenic | 65.0% | |
| CCCCCTAACCCTGGTCCTGA+TGG | + | tig0018895:27796-27815 | Msa1369750:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018895 | gene | 24412 | 28013 | 24412 | ID=Msa1369750;Name=Msa1369750 |
| tig0018895 | mRNA | 24412 | 28013 | 24412 | ID=Msa1369750-mRNA-1;Parent=Msa1369750;Name=Msa1369750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=323|1|1|1|1|1|6|104|341 |
| tig0018895 | exon | 24412 | 24879 | 24412 | ID=Msa1369750-mRNA-1:exon:1327;Parent=Msa1369750-mRNA-1 |
| tig0018895 | exon | 24971 | 25047 | 24971 | ID=Msa1369750-mRNA-1:exon:1328;Parent=Msa1369750-mRNA-1 |
| tig0018895 | exon | 25132 | 25168 | 25132 | ID=Msa1369750-mRNA-1:exon:1329;Parent=Msa1369750-mRNA-1 |
| tig0018895 | exon | 25598 | 25748 | 25598 | ID=Msa1369750-mRNA-1:exon:1330;Parent=Msa1369750-mRNA-1 |
| tig0018895 | exon | 25920 | 26223 | 25920 | ID=Msa1369750-mRNA-1:exon:1331;Parent=Msa1369750-mRNA-1 |
| tig0018895 | exon | 27598 | 28013 | 27598 | ID=Msa1369750-mRNA-1:exon:1332;Parent=Msa1369750-mRNA-1 |
| tig0018895 | five_prime_UTR | 24412 | 24734 | 24412 | ID=Msa1369750-mRNA-1:five_prime_utr;Parent=Msa1369750-mRNA-1 |
| tig0018895 | CDS | 24735 | 24879 | 24735 | ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1 |
| tig0018895 | CDS | 24971 | 25047 | 24971 | ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1 |
| tig0018895 | CDS | 25132 | 25168 | 25132 | ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1 |
| tig0018895 | CDS | 25598 | 25748 | 25598 | ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1 |
| tig0018895 | CDS | 25920 | 26223 | 25920 | ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1 |
| tig0018895 | CDS | 27598 | 27909 | 27598 | ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1 |
| tig0018895 | three_prime_UTR | 27910 | 28013 | 27910 | ID=Msa1369750-mRNA-1:three_prime_utr;Parent=Msa1369750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
