AlfalfaGEDB | Msa1369750

M. sativa cultivar zhongmu-4 / Msa1369750

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369750	XP_013470305.1	91.092	348	10	7	1	341	1	334	0.0	608

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369750	sp\|Q700D9\|MYBF_ARATH	72.152	79	22	0	5	83	4	82	4.63e-33	126

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369750	A0A072VSF0	91.092	348	10	7	1	341	1	334	0.0	608

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TFs/TRs:

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Gene ID	Type	Classification
Msa1369750	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044290	Msa1369750	0.919208	5.998876e-87	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369750	MtrunA17_Chr1g0210911	91.092	348	10	7	1	341	1	334	0.0	608
Msa1369750	MtrunA17_Chr1g0162931	47.493	339	117	15	3	338	2	282	2.42e-77	238
Msa1369750	MtrunA17_Chr2g0320231	60.870	92	33	2	8	99	81	169	1.50e-31	122
Msa1369750	MtrunA17_Chr2g0288601	69.118	68	21	0	8	75	55	122	7.38e-29	108
Msa1369750	MtrunA17_Chr7g0243081	64.557	79	28	0	2	80	49	127	2.19e-28	112
Msa1369750	MtrunA17_Chr8g0379121	69.697	66	20	0	15	80	102	167	4.27e-28	113
Msa1369750	MtrunA17_Chr2g0283951	60.227	88	29	3	4	85	68	155	1.08e-25	105
Msa1369750	MtrunA17_Chr3g0095611	57.971	69	29	0	14	82	9	77	6.17e-24	97.8
Msa1369750	MtrunA17_Chr5g0410741	47.170	106	49	3	23	127	218	317	9.90e-22	95.1
Msa1369750	MtrunA17_Chr6g0479431	63.793	58	21	0	23	80	201	258	2.97e-21	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369750	AT1G14600.1	72.152	79	22	0	5	83	4	82	4.70e-34	126
Msa1369750	AT2G02060.2	69.512	82	20	1	1	77	1	82	1.94e-33	124
Msa1369750	AT2G02060.1	69.512	82	20	1	1	77	1	82	1.94e-33	124
Msa1369750	AT4G04605.1	70.149	67	20	0	16	82	6	72	9.16e-29	111
Msa1369750	AT2G40260.1	66.667	75	25	0	13	87	71	145	3.83e-28	113
Msa1369750	AT2G42660.1	55.319	94	39	1	16	106	42	135	3.63e-27	107
Msa1369750	AT2G38300.1	54.737	95	41	1	1	95	31	123	3.20e-26	107
Msa1369750	AT4G04555.1	54.054	74	34	0	13	86	3	76	3.88e-22	90.1
Msa1369750	AT5G42630.2	43.363	113	58	3	6	113	86	197	2.42e-21	91.3
Msa1369750	AT5G42630.1	43.363	113	58	3	6	113	86	197	3.07e-21	92.0

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Find 91 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATATTCCAACCCTCT+TGG	0.376468	tig0018895:-24694	Msa1369750:intergenic
AACCCATCAGGACCAGGGTT+AGG	0.394026	tig0018895:-27818	Msa1369750:intergenic
AAGAAAGAGAATAAAGAAAG+AGG	0.485354	tig0018895:-27983	Msa1369750:intergenic
AAGACATTGGTTTCTATGTT+GGG	0.380947	tig0018895:-25610	Msa1369750:intergenic
AATCCAGCTGGGAGAGAGAG+AGG	0.530513	tig0018895:-24523	Msa1369750:intergenic
AATGAAAATGAACCTGAAGA+TGG	0.525028	tig0018895:-25038	Msa1369750:intergenic
AATGCCAATGCCAATACCAT+GGG	0.680737	tig0018895:+26041	Msa1369750:CDS
AATTGCCTCACTGATTTCAC+TGG	0.511384	tig0018895:-27780	Msa1369750:intergenic
ACAAAGCAACGATGAAGTTC+AGG	0.428827	tig0018895:-24825	Msa1369750:intergenic
ACACGTCAAGAGCCATCTTC+AGG	0.432180	tig0018895:+25026	Msa1369750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAAAATGAGTAGTAGTTG+TGG	+	tig0018895:24729-24748	Msa1369750:exon	30.0%
ATCAACTGAAGAACAAGTTT+AGG	-	tig0018895:24982-25001	Msa1369750:intergenic	30.0%
AATGAAAATGAACCTGAAGA+TGG	-	tig0018895:25041-25060	Msa1369750:intergenic	30.0%
ACATCTGGTTATCATAAAGA+AGG	-	tig0018895:25116-25135	Msa1369750:intergenic	30.0%
TGCATAAAGAAAATCCACAA+GGG	-	tig0018895:25332-25351	Msa1369750:intergenic	30.0%
ATGCATAAAGAAAATCCACA+AGG	-	tig0018895:25333-25352	Msa1369750:intergenic	30.0%
AGACTACAATGCTCATTTAT+TGG	+	tig0018895:25367-25386	Msa1369750:intron	30.0%
TCCTTGTAGATTTCTTCTAA+TGG	+	tig0018895:25445-25464	Msa1369750:intron	30.0%
ACCATTAGAAGAAATCTACA+AGG	-	tig0018895:25449-25468	Msa1369750:intergenic	30.0%
TGTAGCAAACATAATAGTAG+TGG	-	tig0018895:25496-25515	Msa1369750:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018895	gene	24412	28013	24412	ID=Msa1369750;Name=Msa1369750
tig0018895	mRNA	24412	28013	24412	ID=Msa1369750-mRNA-1;Parent=Msa1369750;Name=Msa1369750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=323\|1\|1\|1\|1\|1\|6\|104\|341
tig0018895	exon	24412	24879	24412	ID=Msa1369750-mRNA-1:exon:1327;Parent=Msa1369750-mRNA-1
tig0018895	exon	24971	25047	24971	ID=Msa1369750-mRNA-1:exon:1328;Parent=Msa1369750-mRNA-1
tig0018895	exon	25132	25168	25132	ID=Msa1369750-mRNA-1:exon:1329;Parent=Msa1369750-mRNA-1
tig0018895	exon	25598	25748	25598	ID=Msa1369750-mRNA-1:exon:1330;Parent=Msa1369750-mRNA-1
tig0018895	exon	25920	26223	25920	ID=Msa1369750-mRNA-1:exon:1331;Parent=Msa1369750-mRNA-1
tig0018895	exon	27598	28013	27598	ID=Msa1369750-mRNA-1:exon:1332;Parent=Msa1369750-mRNA-1
tig0018895	five_prime_UTR	24412	24734	24412	ID=Msa1369750-mRNA-1:five_prime_utr;Parent=Msa1369750-mRNA-1
tig0018895	CDS	24735	24879	24735	ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1
tig0018895	CDS	24971	25047	24971	ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1
tig0018895	CDS	25132	25168	25132	ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1
tig0018895	CDS	25598	25748	25598	ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1
tig0018895	CDS	25920	26223	25920	ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1
tig0018895	CDS	27598	27909	27598	ID=Msa1369750-mRNA-1:cds;Parent=Msa1369750-mRNA-1
tig0018895	three_prime_UTR	27910	28013	27910	ID=Msa1369750-mRNA-1:three_prime_utr;Parent=Msa1369750-mRNA-1

Gene Sequence

>Msa1369750

ATGAGTAGTAGTTGTGGAAGAGAAGGAGGAGGATCAGGAGGAGCAGTGAGGCAGTATATAAGATCAAAAGTCCCTCGTTTGAGATGGACTCCTGAACTTCATCGTTGCTTTGTTCATGCTATTCAAACCCTTGGAGGTCATCATAAGGCTACTCCTAAACTTGTTCTTCAGTTGATGGATATCAAAGGGCTCACTATTTCACACGTCAAGAGCCATCTTCAGATGTATAGAAGCATGAGAGGTGAATTAGGAAGACAAGGTAGGACAAGCTCCCAACATAGAAACCAATGTCTTGAAGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTAATGTTGAGCATTCTTTGATGAGGAGAGAATCTGATTCTTCTTTCATTGGTCACAGTAACAACTTCTCAAAAAGAGCTAGAATCGAGAGAAGAAGTTCTACAACTAGTCTGCAATGCAGCAGTGAAAGAAGAAGAATATGTGATGATGCAGTAACAAAACCGTACTGCTTTTATGACTATGTACAGCTCAATGCCAATGCCAATGCCAATACCATGGGTGATCTGCAGCAGCTGCAGAACAAGAAAGGAATAAAGGATGAACAACAGTTTTGTGCATGGCAGAGGCAAATTCAACCACCCAATTCAACTTTGCTACCAGATTTTGGCATAAACCTCACTTCTTTCAAATCTCTAAACCAAGAATCTGATTTCTCTCAGGCTAGTAATGTAAATGACAGAAAGAGCCCTTCATGGTCAATTAATGGACTTGTGAAAACTGACAGAGCACATGTAGAAGTTGAAGGAGTAGGAGGACATGAGTTGTCATTGTCGTTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGCTTCTTATTCGGCCAGTGAAATCAGTGAGGCAATTTCATGCTGTCCTCCCCCTAACCCTGGTCCTGATGGGTTTAGCAGCTACAAGGACTGCTCTAGAATATCATCTACTGTGAATGAAAGGATTAATTTAGACCTATCTTTAGCCATTTGTGGCAATTGA

Protein sequence

>Msa1369750

MSSSCGREGGGSGGAVRQYIRSKVPRLRWTPELHRCFVHAIQTLGGHHKATPKLVLQLMDIKGLTISHVKSHLQMYRSMRGELGRQGRTSSQHRNQCLEEHDDGCVDEVNDVNVEHSLMRRESDSSFIGHSNNFSKRARIERRSSTTSLQCSSERRRICDDAVTKPYCFYDYVQLNANANANTMGDLQQLQNKKGIKDEQQFCAWQRQIQPPNSTLLPDFGINLTSFKSLNQESDFSQASNVNDRKSPSWSINGLVKTDRAHVEVEGVGGHELSLSLTLQNPSPQTSNASYSASEISEAISCCPPPNPGPDGFSSYKDCSRISSTVNERINLDLSLAICGN*