Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370690 | AES61808.2 | 84.848 | 132 | 5 | 1 | 1 | 132 | 1 | 117 | 1.86e-60 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370690 | sp|Q8GW48|HSBP_ARATH | 52.586 | 116 | 12 | 1 | 1 | 116 | 1 | 73 | 3.20e-31 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370690 | G7IF89 | 84.848 | 132 | 5 | 1 | 1 | 132 | 1 | 117 | 8.88e-61 | 192 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1006010 | Msa1370690 | 0.818026 | 2.429440e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370690 | MtrunA17_Chr1g0195751 | 95.455 | 66 | 3 | 0 | 1 | 66 | 1 | 66 | 5.82e-40 | 128 |
| Msa1370690 | MtrunA17_Chr1g0195761 | 95.556 | 45 | 2 | 0 | 88 | 132 | 1 | 45 | 8.47e-14 | 61.2 |
| Msa1370690 | MtrunA17_Chr7g0269141 | 93.333 | 30 | 2 | 0 | 88 | 117 | 1 | 30 | 1.69e-13 | 60.5 |
| Msa1370690 | MtrunA17_Chr1g0155281 | 40.777 | 103 | 15 | 3 | 1 | 103 | 1 | 57 | 1.75e-13 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370690 | AT4G15802.1 | 52.586 | 116 | 12 | 1 | 1 | 116 | 1 | 73 | 3.26e-32 | 109 |
Find 30 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCCTTTGGCTTCTC+TGG | 0.128097 | tig0019143:+13150 | None:intergenic |
| CTCCAATGCACTTGATGATA+TGG | 0.252686 | tig0019143:-13256 | Msa1370690:CDS |
| CTTCTTCCTTTGGCTTCTCT+GGG | 0.294476 | tig0019143:+13151 | None:intergenic |
| TGTTACAAAGAATATCCTTT+TGG | 0.351873 | tig0019143:-14038 | Msa1370690:CDS |
| TTCTCTGGGGCCGCTGGTGA+TGG | 0.364563 | tig0019143:+13165 | None:intergenic |
| ATATCAGCAGGGCTTTGCTT+TGG | 0.365471 | tig0019143:+14851 | None:intergenic |
| TATAAAGTTTAAAATTTAAA+CGG | 0.390610 | tig0019143:-15150 | Msa1370690:five_prime_UTR |
| TTTGGCTTCTCTGGGGCCGC+TGG | 0.412136 | tig0019143:+13159 | None:intergenic |
| CCACTCCCATCTCAGCTCTC+AGG | 0.430009 | tig0019143:+13196 | None:intergenic |
| CAATGACCTGAGAGCTGAGA+TGG | 0.444608 | tig0019143:-13202 | Msa1370690:CDS |
| CAATGGAGTCAGACATGGTC+TGG | 0.456007 | tig0019143:+14059 | None:intergenic |
| ACAAATGCGGTCATATCAGC+AGG | 0.464881 | tig0019143:+14839 | None:intergenic |
| TCCCATATCATCAAGTGCAT+TGG | 0.508591 | tig0019143:+13254 | None:intergenic |
| AAGGATATTCTTTGTAACAA+TGG | 0.510692 | tig0019143:+14042 | None:intergenic |
| TACTTTCAAAGTTTGAGTGT+TGG | 0.512953 | tig0019143:+13292 | None:intergenic |
| TTAAATTAAAGAATGCCAAA+AGG | 0.515868 | tig0019143:+14023 | None:intergenic |
| TCCAATGCACTTGATGATAT+GGG | 0.531782 | tig0019143:-13255 | Msa1370690:CDS |
| GGGAAGTCGTATAAATGAGT+TGG | 0.533498 | tig0019143:-13235 | Msa1370690:CDS |
| GCTTTGGATCGTTTGAATCG+TGG | 0.545339 | tig0019143:+14867 | None:intergenic |
| AAAGAAATGAAATGAAAATG+AGG | 0.546488 | tig0019143:+15123 | None:intergenic |
| AACTCACCATCTGCTGAAGA+AGG | 0.550472 | tig0019143:+14186 | None:intergenic |
| AGCGGCCCCAGAGAAGCCAA+AGG | 0.565820 | tig0019143:-13157 | Msa1370690:CDS |
| AATGACCTGAGAGCTGAGAT+GGG | 0.575254 | tig0019143:-13201 | Msa1370690:CDS |
| GCAAAACCTTCTTCAGCAGA+TGG | 0.581242 | tig0019143:-14192 | Msa1370690:intron |
| TCATCATCATCAAAATCTCA+TGG | 0.588230 | tig0019143:-15059 | Msa1370690:intron |
| CCTGAGAGCTGAGATGGGAG+TGG | 0.609780 | tig0019143:-13196 | Msa1370690:CDS |
| TGTAACAATGGAGTCAGACA+TGG | 0.622893 | tig0019143:+14054 | None:intergenic |
| TTCTTCCTTTGGCTTCTCTG+GGG | 0.623390 | tig0019143:+13152 | None:intergenic |
| GGAGAGCTCTCCATCACCAG+CGG | 0.653611 | tig0019143:-13175 | Msa1370690:CDS |
| CAAATGCGGTCATATCAGCA+GGG | 0.693092 | tig0019143:+14840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTTTGTTT+TGG | - | tig0019143:14182-14201 | Msa1370690:intron | 10.0% |
| !!! | ATTTTAGTTAAGAATTTAAA+TGG | - | tig0019143:14486-14505 | Msa1370690:intron | 10.0% |
| !!! | TTTTTTTTTTTTGTTTGTTT+TGG | - | tig0019143:14182-14201 | Msa1370690:intron | 10.0% |
| !!! | ATTTTAGTTAAGAATTTAAA+TGG | - | tig0019143:14486-14505 | Msa1370690:intron | 10.0% |
| !!! | AAAATTGATTTTAACATGTT+TGG | + | tig0019143:13805-13824 | None:intergenic | 15.0% |
| !!! | ATTTATTTATTTCTCCATTT+AGG | - | tig0019143:14892-14911 | Msa1370690:intron | 15.0% |
| !!! | TTTATTTATTTCTCCATTTA+GGG | - | tig0019143:14893-14912 | Msa1370690:intron | 15.0% |
| !!! | TTACTGATTTTATTATAACA+TGG | - | tig0019143:14949-14968 | Msa1370690:intron | 15.0% |
| !!! | TACTGATTTTATTATAACAT+GGG | - | tig0019143:14950-14969 | Msa1370690:intron | 15.0% |
| !!! | AAAATTGATTTTAACATGTT+TGG | + | tig0019143:13805-13824 | None:intergenic | 15.0% |
| !!! | ATTTATTTATTTCTCCATTT+AGG | - | tig0019143:14892-14911 | Msa1370690:intron | 15.0% |
| !!! | TTTATTTATTTCTCCATTTA+GGG | - | tig0019143:14893-14912 | Msa1370690:intron | 15.0% |
| !!! | TTACTGATTTTATTATAACA+TGG | - | tig0019143:14949-14968 | Msa1370690:intron | 15.0% |
| !!! | TACTGATTTTATTATAACAT+GGG | - | tig0019143:14950-14969 | Msa1370690:intron | 15.0% |
| !! | AAAGAAATGAAATGAAAATG+AGG | + | tig0019143:13159-13178 | None:intergenic | 20.0% |
| !!! | AAATTAGGGTTTTCAAAATT+TGG | - | tig0019143:13329-13348 | Msa1370690:intron | 20.0% |
| !!! | AATTAGGGTTTTCAAAATTT+GGG | - | tig0019143:13330-13349 | Msa1370690:intron | 20.0% |
| !!! | TAAACTGATTTACTTATGTT+TGG | - | tig0019143:13669-13688 | Msa1370690:intron | 20.0% |
| !!! | TGAACACTTAAATTTTCTTA+GGG | + | tig0019143:13876-13895 | None:intergenic | 20.0% |
| !!! | TTGAACACTTAAATTTTCTT+AGG | + | tig0019143:13877-13896 | None:intergenic | 20.0% |
| !! | TTAAATTAAAGAATGCCAAA+AGG | + | tig0019143:14259-14278 | None:intergenic | 20.0% |
| !! | GTAAGAAAAAAAATGTTCAA+AGG | + | tig0019143:14341-14360 | None:intergenic | 20.0% |
| !! | AAAGAAATGAAATGAAAATG+AGG | + | tig0019143:13159-13178 | None:intergenic | 20.0% |
| !!! | AAATTAGGGTTTTCAAAATT+TGG | - | tig0019143:13329-13348 | Msa1370690:intron | 20.0% |
| !!! | AATTAGGGTTTTCAAAATTT+GGG | - | tig0019143:13330-13349 | Msa1370690:intron | 20.0% |
| !!! | TAAACTGATTTACTTATGTT+TGG | - | tig0019143:13669-13688 | Msa1370690:intron | 20.0% |
| !!! | TGAACACTTAAATTTTCTTA+GGG | + | tig0019143:13876-13895 | None:intergenic | 20.0% |
| !!! | TTGAACACTTAAATTTTCTT+AGG | + | tig0019143:13877-13896 | None:intergenic | 20.0% |
| !! | TTAAATTAAAGAATGCCAAA+AGG | + | tig0019143:14259-14278 | None:intergenic | 20.0% |
| !! | GTAAGAAAAAAAATGTTCAA+AGG | + | tig0019143:14341-14360 | None:intergenic | 20.0% |
| ! | ATCTGCGTATTTATGAAATT+AGG | - | tig0019143:13314-13333 | Msa1370690:intron | 25.0% |
| ! | TCTGCGTATTTATGAAATTA+GGG | - | tig0019143:13315-13334 | Msa1370690:intron | 25.0% |
| !!! | GATTTTGAATGAATTGATTC+TGG | - | tig0019143:13628-13647 | Msa1370690:intron | 25.0% |
| !! | CTAGTTAGAATCAATTTTGA+AGG | - | tig0019143:13755-13774 | Msa1370690:intron | 25.0% |
| ! | AAGGATATTCTTTGTAACAA+TGG | + | tig0019143:14240-14259 | None:intergenic | 25.0% |
| !! | TGTTACAAAGAATATCCTTT+TGG | - | tig0019143:14241-14260 | Msa1370690:intron | 25.0% |
| !! | AATAAGATTTGGTTTCAAGA+GGG | - | tig0019143:14367-14386 | Msa1370690:intron | 25.0% |
| ! | GACATAATAGACTATGATTT+AGG | + | tig0019143:14538-14557 | None:intergenic | 25.0% |
| ! | AATCATAGTCTATTATGTCT+TGG | - | tig0019143:14539-14558 | Msa1370690:intron | 25.0% |
| !!! | ATGCATCATATTATTGGTTT+GGG | + | tig0019143:14681-14700 | None:intergenic | 25.0% |
| ! | ATATGCATGCATCATATTAT+TGG | + | tig0019143:14687-14706 | None:intergenic | 25.0% |
| !!! | GATAGTTATTGACTTAACAA+CGG | - | tig0019143:14773-14792 | Msa1370690:intron | 25.0% |
| !!! | ATAGTTATTGACTTAACAAC+GGG | - | tig0019143:14774-14793 | Msa1370690:intron | 25.0% |
| ! | TAAATCATGCATAACTTCAT+TGG | + | tig0019143:14873-14892 | None:intergenic | 25.0% |
| ! | CTAATACAAATTTCCCTAAA+TGG | + | tig0019143:14909-14928 | None:intergenic | 25.0% |
| ! | ATCTGCGTATTTATGAAATT+AGG | - | tig0019143:13314-13333 | Msa1370690:intron | 25.0% |
| ! | TCTGCGTATTTATGAAATTA+GGG | - | tig0019143:13315-13334 | Msa1370690:intron | 25.0% |
| !!! | GATTTTGAATGAATTGATTC+TGG | - | tig0019143:13628-13647 | Msa1370690:intron | 25.0% |
| !! | CTAGTTAGAATCAATTTTGA+AGG | - | tig0019143:13755-13774 | Msa1370690:intron | 25.0% |
| ! | AAGGATATTCTTTGTAACAA+TGG | + | tig0019143:14240-14259 | None:intergenic | 25.0% |
| !! | TGTTACAAAGAATATCCTTT+TGG | - | tig0019143:14241-14260 | Msa1370690:intron | 25.0% |
| !! | AATAAGATTTGGTTTCAAGA+GGG | - | tig0019143:14367-14386 | Msa1370690:intron | 25.0% |
| ! | GACATAATAGACTATGATTT+AGG | + | tig0019143:14538-14557 | None:intergenic | 25.0% |
| ! | AATCATAGTCTATTATGTCT+TGG | - | tig0019143:14539-14558 | Msa1370690:intron | 25.0% |
| !!! | ATGCATCATATTATTGGTTT+GGG | + | tig0019143:14681-14700 | None:intergenic | 25.0% |
| ! | ATATGCATGCATCATATTAT+TGG | + | tig0019143:14687-14706 | None:intergenic | 25.0% |
| !!! | GATAGTTATTGACTTAACAA+CGG | - | tig0019143:14773-14792 | Msa1370690:intron | 25.0% |
| !!! | ATAGTTATTGACTTAACAAC+GGG | - | tig0019143:14774-14793 | Msa1370690:intron | 25.0% |
| ! | TAAATCATGCATAACTTCAT+TGG | + | tig0019143:14873-14892 | None:intergenic | 25.0% |
| ! | CTAATACAAATTTCCCTAAA+TGG | + | tig0019143:14909-14928 | None:intergenic | 25.0% |
| ! | TTCATTTCTTTTCGAAACGT+TGG | - | tig0019143:13168-13187 | Msa1370690:CDS | 30.0% |
| TCATCATCATCAAAATCTCA+TGG | - | tig0019143:13220-13239 | Msa1370690:CDS | 30.0% | |
| ATCATCAAAATCTCATGGTT+AGG | - | tig0019143:13225-13244 | Msa1370690:CDS | 30.0% | |
| TCATCAAAATCTCATGGTTA+GGG | - | tig0019143:13226-13245 | Msa1370690:CDS | 30.0% | |
| AACAGAATGAGATAATGCAA+CGG | + | tig0019143:13370-13389 | None:intergenic | 30.0% | |
| CGAAGAAAAACTTACAAATG+CGG | + | tig0019143:13456-13475 | None:intergenic | 30.0% | |
| TGATGTAATTTAAGCGTGTT+TGG | - | tig0019143:13586-13605 | Msa1370690:intron | 30.0% | |
| TCTGGCTAGTAATGAATTAA+AGG | - | tig0019143:13646-13665 | Msa1370690:intron | 30.0% | |
| ! | TACACCTCCATAATCAATTT+TGG | - | tig0019143:13824-13843 | Msa1370690:intron | 30.0% |
| GTTCAAATCTAATTGTGTGT+CGG | - | tig0019143:13891-13910 | Msa1370690:intron | 30.0% | |
| TTCAATTAGTGTCTGGTAAT+TGG | + | tig0019143:13939-13958 | None:intergenic | 30.0% | |
| TCATCTTGAAACTAAGTACA+TGG | + | tig0019143:14002-14021 | None:intergenic | 30.0% | |
| AAAAAATCTAGTTAGCAGCA+GGG | + | tig0019143:14168-14187 | None:intergenic | 30.0% | |
| AAAAAAATCTAGTTAGCAGC+AGG | + | tig0019143:14169-14188 | None:intergenic | 30.0% | |
| CTTACTCATGCAATAAGATT+TGG | - | tig0019143:14356-14375 | Msa1370690:intron | 30.0% | |
| ! | CAATAAGATTTGGTTTCAAG+AGG | - | tig0019143:14366-14385 | Msa1370690:intron | 30.0% |
| TGCATTATGCTAACTTATTC+TGG | - | tig0019143:14425-14444 | Msa1370690:intron | 30.0% | |
| GCATTATGCTAACTTATTCT+GGG | - | tig0019143:14426-14445 | Msa1370690:intron | 30.0% | |
| !! | TTAAATGGAACCTTTGAAGT+TGG | - | tig0019143:14501-14520 | Msa1370690:intron | 30.0% |
| !! | TAAATGGAACCTTTGAAGTT+GGG | - | tig0019143:14502-14521 | Msa1370690:intron | 30.0% |
| ATCAAATAACCCAACTTCAA+AGG | + | tig0019143:14514-14533 | None:intergenic | 30.0% | |
| !! | GGTTCATACACAATTTTAGT+GGG | + | tig0019143:14660-14679 | None:intergenic | 30.0% |
| ! | CATGCATCATATTATTGGTT+TGG | + | tig0019143:14682-14701 | None:intergenic | 30.0% |
| TTGTATTAGCTAAGTCATGA+TGG | - | tig0019143:14920-14939 | Msa1370690:intron | 30.0% | |
| TACTTTCAAAGTTTGAGTGT+TGG | + | tig0019143:14990-15009 | None:intergenic | 30.0% | |
| !! | TTTTTCAACTCTTCTTCCTT+TGG | + | tig0019143:15141-15160 | None:intergenic | 30.0% |
| GAAGAGTTGAAAAAAGAAGA+TGG | - | tig0019143:15147-15166 | Msa1370690:five_prime_UTR | 30.0% | |
| ! | TTCATTTCTTTTCGAAACGT+TGG | - | tig0019143:13168-13187 | Msa1370690:CDS | 30.0% |
| TCATCATCATCAAAATCTCA+TGG | - | tig0019143:13220-13239 | Msa1370690:CDS | 30.0% | |
| ATCATCAAAATCTCATGGTT+AGG | - | tig0019143:13225-13244 | Msa1370690:CDS | 30.0% | |
| TCATCAAAATCTCATGGTTA+GGG | - | tig0019143:13226-13245 | Msa1370690:CDS | 30.0% | |
| AACAGAATGAGATAATGCAA+CGG | + | tig0019143:13370-13389 | None:intergenic | 30.0% | |
| CGAAGAAAAACTTACAAATG+CGG | + | tig0019143:13456-13475 | None:intergenic | 30.0% | |
| TGATGTAATTTAAGCGTGTT+TGG | - | tig0019143:13586-13605 | Msa1370690:intron | 30.0% | |
| TCTGGCTAGTAATGAATTAA+AGG | - | tig0019143:13646-13665 | Msa1370690:intron | 30.0% | |
| ! | TACACCTCCATAATCAATTT+TGG | - | tig0019143:13824-13843 | Msa1370690:intron | 30.0% |
| GTTCAAATCTAATTGTGTGT+CGG | - | tig0019143:13891-13910 | Msa1370690:intron | 30.0% | |
| TTCAATTAGTGTCTGGTAAT+TGG | + | tig0019143:13939-13958 | None:intergenic | 30.0% | |
| TCATCTTGAAACTAAGTACA+TGG | + | tig0019143:14002-14021 | None:intergenic | 30.0% | |
| AAAAAATCTAGTTAGCAGCA+GGG | + | tig0019143:14168-14187 | None:intergenic | 30.0% | |
| AAAAAAATCTAGTTAGCAGC+AGG | + | tig0019143:14169-14188 | None:intergenic | 30.0% | |
| CTTACTCATGCAATAAGATT+TGG | - | tig0019143:14356-14375 | Msa1370690:intron | 30.0% | |
| ! | CAATAAGATTTGGTTTCAAG+AGG | - | tig0019143:14366-14385 | Msa1370690:intron | 30.0% |
| TGCATTATGCTAACTTATTC+TGG | - | tig0019143:14425-14444 | Msa1370690:intron | 30.0% | |
| GCATTATGCTAACTTATTCT+GGG | - | tig0019143:14426-14445 | Msa1370690:intron | 30.0% | |
| !! | TTAAATGGAACCTTTGAAGT+TGG | - | tig0019143:14501-14520 | Msa1370690:intron | 30.0% |
| !! | TAAATGGAACCTTTGAAGTT+GGG | - | tig0019143:14502-14521 | Msa1370690:intron | 30.0% |
| ATCAAATAACCCAACTTCAA+AGG | + | tig0019143:14514-14533 | None:intergenic | 30.0% | |
| !! | GGTTCATACACAATTTTAGT+GGG | + | tig0019143:14660-14679 | None:intergenic | 30.0% |
| ! | CATGCATCATATTATTGGTT+TGG | + | tig0019143:14682-14701 | None:intergenic | 30.0% |
| TTGTATTAGCTAAGTCATGA+TGG | - | tig0019143:14920-14939 | Msa1370690:intron | 30.0% | |
| TACTTTCAAAGTTTGAGTGT+TGG | + | tig0019143:14990-15009 | None:intergenic | 30.0% | |
| !! | TTTTTCAACTCTTCTTCCTT+TGG | + | tig0019143:15141-15160 | None:intergenic | 30.0% |
| GAAGAGTTGAAAAAAGAAGA+TGG | - | tig0019143:15147-15166 | Msa1370690:five_prime_UTR | 30.0% | |
| TTTCAGATCTTCGATGTCTA+TGG | - | tig0019143:13492-13511 | Msa1370690:intron | 35.0% | |
| ACTTATGTTTGGCACAATAG+TGG | - | tig0019143:13680-13699 | Msa1370690:intron | 35.0% | |
| TAGACACTTCAATTAGTGTC+TGG | + | tig0019143:13946-13965 | None:intergenic | 35.0% | |
| GAAATTTGCATATTGCACTC+AGG | + | tig0019143:13980-13999 | None:intergenic | 35.0% | |
| !! | AGCTATTTTGCTTAGCAAAC+TGG | + | tig0019143:14300-14319 | None:intergenic | 35.0% |
| TTGTTTGGTCAGATGATAGT+AGG | - | tig0019143:14390-14409 | Msa1370690:intron | 35.0% | |
| AGATGATAGTAGGTCTTAAC+TGG | - | tig0019143:14400-14419 | Msa1370690:intron | 35.0% | |
| ! | TTAGTGGGTAATGTAGACTT+TGG | + | tig0019143:14645-14664 | None:intergenic | 35.0% |
| ! | GGGTTCATACACAATTTTAG+TGG | + | tig0019143:14661-14680 | None:intergenic | 35.0% |
| ACCTGATAGACTATGTTGTT+GGG | - | tig0019143:14751-14770 | Msa1370690:intron | 35.0% | |
| ! | ACTTCATTGGTGATTGCATT+GGG | + | tig0019143:14860-14879 | None:intergenic | 35.0% |
| ! | AACTTCATTGGTGATTGCAT+TGG | + | tig0019143:14861-14880 | None:intergenic | 35.0% |
| ! | TCCAATGCACTTGATGATAT+GGG | - | tig0019143:15024-15043 | Msa1370690:intron | 35.0% |
| TTTCAGATCTTCGATGTCTA+TGG | - | tig0019143:13492-13511 | Msa1370690:intron | 35.0% | |
| ACTTATGTTTGGCACAATAG+TGG | - | tig0019143:13680-13699 | Msa1370690:intron | 35.0% | |
| TAGACACTTCAATTAGTGTC+TGG | + | tig0019143:13946-13965 | None:intergenic | 35.0% | |
| GAAATTTGCATATTGCACTC+AGG | + | tig0019143:13980-13999 | None:intergenic | 35.0% | |
| !! | AGCTATTTTGCTTAGCAAAC+TGG | + | tig0019143:14300-14319 | None:intergenic | 35.0% |
| TTGTTTGGTCAGATGATAGT+AGG | - | tig0019143:14390-14409 | Msa1370690:intron | 35.0% | |
| AGATGATAGTAGGTCTTAAC+TGG | - | tig0019143:14400-14419 | Msa1370690:intron | 35.0% | |
| ! | TTAGTGGGTAATGTAGACTT+TGG | + | tig0019143:14645-14664 | None:intergenic | 35.0% |
| ! | GGGTTCATACACAATTTTAG+TGG | + | tig0019143:14661-14680 | None:intergenic | 35.0% |
| ACCTGATAGACTATGTTGTT+GGG | - | tig0019143:14751-14770 | Msa1370690:intron | 35.0% | |
| ! | ACTTCATTGGTGATTGCATT+GGG | + | tig0019143:14860-14879 | None:intergenic | 35.0% |
| ! | AACTTCATTGGTGATTGCAT+TGG | + | tig0019143:14861-14880 | None:intergenic | 35.0% |
| ! | TCCAATGCACTTGATGATAT+GGG | - | tig0019143:15024-15043 | Msa1370690:intron | 35.0% |
| ! | CTGTTTTCGTTTGTGATTGC+AGG | - | tig0019143:13385-13404 | Msa1370690:intron | 40.0% |
| GGAGCCAAAATTGATTATGG+AGG | + | tig0019143:13831-13850 | None:intergenic | 40.0% | |
| GGAGGAGCCAAAATTGATTA+TGG | + | tig0019143:13834-13853 | None:intergenic | 40.0% | |
| ! | ACGTAAAGTTGCACTTTTGG+AGG | + | tig0019143:13852-13871 | None:intergenic | 40.0% |
| ! | GGTACGTAAAGTTGCACTTT+TGG | + | tig0019143:13855-13874 | None:intergenic | 40.0% |
| ! | TGAAAAGCGTAACAGAGTCA+TGG | + | tig0019143:14064-14083 | None:intergenic | 40.0% |
| ! | ATGACTCTGTTACGCTTTTC+AGG | - | tig0019143:14063-14082 | Msa1370690:CDS | 40.0% |
| !!! | TTTGTTTTGGCCAGCAAAGT+AGG | - | tig0019143:14195-14214 | Msa1370690:CDS | 40.0% |
| TGTAACAATGGAGTCAGACA+TGG | + | tig0019143:14228-14247 | None:intergenic | 40.0% | |
| TTGGTTTCAAGAGGGTTGTT+TGG | - | tig0019143:14375-14394 | Msa1370690:intron | 40.0% | |
| !! | TGTCTGTGCTGTTAACTTGT+TGG | - | tig0019143:14586-14605 | Msa1370690:intron | 40.0% |
| CACCTGATAGACTATGTTGT+TGG | - | tig0019143:14750-14769 | Msa1370690:intron | 40.0% | |
| TCCCAACAACATAGTCTATC+AGG | + | tig0019143:14755-14774 | None:intergenic | 40.0% | |
| TGACTTAACAACGGGTCAAA+CGG | - | tig0019143:14782-14801 | Msa1370690:intron | 40.0% | |
| ! | CTCCAATGCACTTGATGATA+TGG | - | tig0019143:15023-15042 | Msa1370690:intron | 40.0% |
| TCCCATATCATCAAGTGCAT+TGG | + | tig0019143:15028-15047 | None:intergenic | 40.0% | |
| GGGAAGTCGTATAAATGAGT+TGG | - | tig0019143:15044-15063 | Msa1370690:intron | 40.0% | |
| ! | CTGTTTTCGTTTGTGATTGC+AGG | - | tig0019143:13385-13404 | Msa1370690:intron | 40.0% |
| GGAGCCAAAATTGATTATGG+AGG | + | tig0019143:13831-13850 | None:intergenic | 40.0% | |
| GGAGGAGCCAAAATTGATTA+TGG | + | tig0019143:13834-13853 | None:intergenic | 40.0% | |
| ! | ACGTAAAGTTGCACTTTTGG+AGG | + | tig0019143:13852-13871 | None:intergenic | 40.0% |
| ! | GGTACGTAAAGTTGCACTTT+TGG | + | tig0019143:13855-13874 | None:intergenic | 40.0% |
| ! | TGAAAAGCGTAACAGAGTCA+TGG | + | tig0019143:14064-14083 | None:intergenic | 40.0% |
| ! | ATGACTCTGTTACGCTTTTC+AGG | - | tig0019143:14063-14082 | Msa1370690:CDS | 40.0% |
| !!! | TTTGTTTTGGCCAGCAAAGT+AGG | - | tig0019143:14195-14214 | Msa1370690:CDS | 40.0% |
| TGTAACAATGGAGTCAGACA+TGG | + | tig0019143:14228-14247 | None:intergenic | 40.0% | |
| TTGGTTTCAAGAGGGTTGTT+TGG | - | tig0019143:14375-14394 | Msa1370690:intron | 40.0% | |
| !! | TGTCTGTGCTGTTAACTTGT+TGG | - | tig0019143:14586-14605 | Msa1370690:intron | 40.0% |
| CACCTGATAGACTATGTTGT+TGG | - | tig0019143:14750-14769 | Msa1370690:intron | 40.0% | |
| TCCCAACAACATAGTCTATC+AGG | + | tig0019143:14755-14774 | None:intergenic | 40.0% | |
| TGACTTAACAACGGGTCAAA+CGG | - | tig0019143:14782-14801 | Msa1370690:intron | 40.0% | |
| ! | CTCCAATGCACTTGATGATA+TGG | - | tig0019143:15023-15042 | Msa1370690:intron | 40.0% |
| TCCCATATCATCAAGTGCAT+TGG | + | tig0019143:15028-15047 | None:intergenic | 40.0% | |
| GGGAAGTCGTATAAATGAGT+TGG | - | tig0019143:15044-15063 | Msa1370690:intron | 40.0% | |
| ! | GCTTTGGATCGTTTGAATCG+TGG | + | tig0019143:13415-13434 | None:intergenic | 45.0% |
| ATATCAGCAGGGCTTTGCTT+TGG | + | tig0019143:13431-13450 | None:intergenic | 45.0% | |
| CAAATGCGGTCATATCAGCA+GGG | + | tig0019143:13442-13461 | None:intergenic | 45.0% | |
| ACAAATGCGGTCATATCAGC+AGG | + | tig0019143:13443-13462 | None:intergenic | 45.0% | |
| ! | GGCACAATAGTGGAAAAGTG+AGG | - | tig0019143:13690-13709 | Msa1370690:intron | 45.0% |
| ! | TGTGTGTCGGTATGTCTTGT+CGG | - | tig0019143:13904-13923 | Msa1370690:intron | 45.0% |
| GCAAAACCTTCTTCAGCAGA+TGG | - | tig0019143:14087-14106 | Msa1370690:intron | 45.0% | |
| AACTCACCATCTGCTGAAGA+AGG | + | tig0019143:14096-14115 | None:intergenic | 45.0% | |
| AATGACCTGAGAGCTGAGAT+GGG | - | tig0019143:15078-15097 | Msa1370690:five_prime_UTR | 45.0% | |
| ! | TTCTTCCTTTGGCTTCTCTG+GGG | + | tig0019143:15130-15149 | None:intergenic | 45.0% |
| ! | CTTCTTCCTTTGGCTTCTCT+GGG | + | tig0019143:15131-15150 | None:intergenic | 45.0% |
| ! | TCTTCTTCCTTTGGCTTCTC+TGG | + | tig0019143:15132-15151 | None:intergenic | 45.0% |
| ! | GCTTTGGATCGTTTGAATCG+TGG | + | tig0019143:13415-13434 | None:intergenic | 45.0% |
| ATATCAGCAGGGCTTTGCTT+TGG | + | tig0019143:13431-13450 | None:intergenic | 45.0% | |
| CAAATGCGGTCATATCAGCA+GGG | + | tig0019143:13442-13461 | None:intergenic | 45.0% | |
| ACAAATGCGGTCATATCAGC+AGG | + | tig0019143:13443-13462 | None:intergenic | 45.0% | |
| ! | GGCACAATAGTGGAAAAGTG+AGG | - | tig0019143:13690-13709 | Msa1370690:intron | 45.0% |
| ! | TGTGTGTCGGTATGTCTTGT+CGG | - | tig0019143:13904-13923 | Msa1370690:intron | 45.0% |
| GCAAAACCTTCTTCAGCAGA+TGG | - | tig0019143:14087-14106 | Msa1370690:intron | 45.0% | |
| AACTCACCATCTGCTGAAGA+AGG | + | tig0019143:14096-14115 | None:intergenic | 45.0% | |
| AATGACCTGAGAGCTGAGAT+GGG | - | tig0019143:15078-15097 | Msa1370690:five_prime_UTR | 45.0% | |
| ! | TTCTTCCTTTGGCTTCTCTG+GGG | + | tig0019143:15130-15149 | None:intergenic | 45.0% |
| ! | CTTCTTCCTTTGGCTTCTCT+GGG | + | tig0019143:15131-15150 | None:intergenic | 45.0% |
| ! | TCTTCTTCCTTTGGCTTCTC+TGG | + | tig0019143:15132-15151 | None:intergenic | 45.0% |
| !!! | TATAAAGTTTAAAATTTAAA+CGG | - | tig0019143:13129-13148 | Msa1370690:CDS | 5.0% |
| !!! | TATAAAGTTTAAAATTTAAA+CGG | - | tig0019143:13129-13148 | Msa1370690:CDS | 5.0% |
| ! | TGGTCTGGAACCTACTTTGC+TGG | + | tig0019143:14208-14227 | None:intergenic | 50.0% |
| CAATGGAGTCAGACATGGTC+TGG | + | tig0019143:14223-14242 | None:intergenic | 50.0% | |
| CAATGACCTGAGAGCTGAGA+TGG | - | tig0019143:15077-15096 | Msa1370690:five_prime_UTR | 50.0% | |
| ! | TGGTCTGGAACCTACTTTGC+TGG | + | tig0019143:14208-14227 | None:intergenic | 50.0% |
| CAATGGAGTCAGACATGGTC+TGG | + | tig0019143:14223-14242 | None:intergenic | 50.0% | |
| CAATGACCTGAGAGCTGAGA+TGG | - | tig0019143:15077-15096 | Msa1370690:five_prime_UTR | 50.0% | |
| CCACTCCCATCTCAGCTCTC+AGG | + | tig0019143:15086-15105 | None:intergenic | 60.0% | |
| CCTGAGAGCTGAGATGGGAG+TGG | - | tig0019143:15083-15102 | Msa1370690:five_prime_UTR | 60.0% | |
| GGAGAGCTCTCCATCACCAG+CGG | - | tig0019143:15104-15123 | Msa1370690:five_prime_UTR | 60.0% | |
| CCACTCCCATCTCAGCTCTC+AGG | + | tig0019143:15086-15105 | None:intergenic | 60.0% | |
| CCTGAGAGCTGAGATGGGAG+TGG | - | tig0019143:15083-15102 | Msa1370690:five_prime_UTR | 60.0% | |
| GGAGAGCTCTCCATCACCAG+CGG | - | tig0019143:15104-15123 | Msa1370690:five_prime_UTR | 60.0% | |
| !! | TTCTCTGGGGCCGCTGGTGA+TGG | + | tig0019143:15117-15136 | None:intergenic | 65.0% |
| !! | TTTGGCTTCTCTGGGGCCGC+TGG | + | tig0019143:15123-15142 | None:intergenic | 65.0% |
| AGCGGCCCCAGAGAAGCCAA+AGG | - | tig0019143:15122-15141 | Msa1370690:five_prime_UTR | 65.0% | |
| !! | TTCTCTGGGGCCGCTGGTGA+TGG | + | tig0019143:15117-15136 | None:intergenic | 65.0% |
| !! | TTTGGCTTCTCTGGGGCCGC+TGG | + | tig0019143:15123-15142 | None:intergenic | 65.0% |
| AGCGGCCCCAGAGAAGCCAA+AGG | - | tig0019143:15122-15141 | Msa1370690:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019143 | gene | 13122 | 15179 | 13122 | ID=Msa1370690;Name=Msa1370690 |
| tig0019143 | mRNA | 13122 | 15179 | 13122 | ID=Msa1370690-mRNA-1;Parent=Msa1370690;Name=Msa1370690-mRNA-1;_AED=0.26;_eAED=0.27;_QI=117|0.75|0.6|1|1|1|5|0|132 |
| tig0019143 | exon | 13122 | 13320 | 13122 | ID=Msa1370690-mRNA-1:exon:1930;Parent=Msa1370690-mRNA-1 |
| tig0019143 | exon | 13974 | 14092 | 13974 | ID=Msa1370690-mRNA-1:exon:1929;Parent=Msa1370690-mRNA-1 |
| tig0019143 | exon | 14193 | 14216 | 14193 | ID=Msa1370690-mRNA-1:exon:1928;Parent=Msa1370690-mRNA-1 |
| tig0019143 | exon | 14841 | 14894 | 14841 | ID=Msa1370690-mRNA-1:exon:1927;Parent=Msa1370690-mRNA-1 |
| tig0019143 | exon | 15060 | 15179 | 15060 | ID=Msa1370690-mRNA-1:exon:1926;Parent=Msa1370690-mRNA-1 |
| tig0019143 | five_prime_UTR | 15063 | 15179 | 15063 | ID=Msa1370690-mRNA-1:five_prime_utr;Parent=Msa1370690-mRNA-1 |
| tig0019143 | CDS | 15060 | 15062 | 15060 | ID=Msa1370690-mRNA-1:cds;Parent=Msa1370690-mRNA-1 |
| tig0019143 | CDS | 14841 | 14894 | 14841 | ID=Msa1370690-mRNA-1:cds;Parent=Msa1370690-mRNA-1 |
| tig0019143 | CDS | 14193 | 14216 | 14193 | ID=Msa1370690-mRNA-1:cds;Parent=Msa1370690-mRNA-1 |
| tig0019143 | CDS | 13974 | 14092 | 13974 | ID=Msa1370690-mRNA-1:cds;Parent=Msa1370690-mRNA-1 |
| tig0019143 | CDS | 13122 | 13320 | 13122 | ID=Msa1370690-mRNA-1:cds;Parent=Msa1370690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
