Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372830 | XP_013464844.2 | 93.537 | 294 | 17 | 2 | 1 | 293 | 5 | 297 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372830 | sp|Q681X4|ZAT5_ARATH | 40.952 | 315 | 129 | 11 | 6 | 293 | 2 | 286 | 1.62e-50 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372830 | A0A396JB23 | 93.537 | 294 | 17 | 2 | 1 | 293 | 5 | 297 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1372830 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0297080 | Msa1372830 | 0.882058 | 1.432244e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372830 | MtrunA17_Chr2g0320311 | 93.537 | 294 | 17 | 2 | 1 | 293 | 5 | 297 | 0.0 | 541 |
| Msa1372830 | MtrunA17_Chr4g0027991 | 43.202 | 331 | 110 | 12 | 3 | 293 | 1 | 293 | 2.32e-57 | 186 |
| Msa1372830 | MtrunA17_Chr1g0197281 | 37.419 | 310 | 140 | 9 | 15 | 285 | 18 | 312 | 1.10e-46 | 160 |
| Msa1372830 | MtrunA17_Chr1g0180311 | 40.000 | 300 | 134 | 10 | 19 | 293 | 19 | 297 | 1.48e-46 | 158 |
| Msa1372830 | MtrunA17_Chr1g0182181 | 32.870 | 216 | 77 | 6 | 64 | 279 | 4 | 151 | 7.51e-26 | 100 |
| Msa1372830 | MtrunA17_Chr1g0182161 | 39.623 | 159 | 51 | 3 | 125 | 279 | 39 | 156 | 3.03e-24 | 96.3 |
| Msa1372830 | MtrunA17_Chr7g0263131 | 39.024 | 164 | 57 | 6 | 115 | 277 | 26 | 147 | 5.30e-23 | 92.8 |
| Msa1372830 | MtrunA17_Chr7g0222831 | 37.989 | 179 | 46 | 6 | 71 | 248 | 12 | 126 | 2.97e-22 | 91.7 |
| Msa1372830 | MtrunA17_Chr7g0263121 | 32.877 | 219 | 80 | 8 | 62 | 279 | 6 | 158 | 4.65e-22 | 90.5 |
| Msa1372830 | MtrunA17_Chr1g0212561 | 39.286 | 140 | 50 | 3 | 108 | 245 | 26 | 132 | 3.91e-20 | 86.3 |
| Msa1372830 | MtrunA17_Chr1g0188911 | 34.911 | 169 | 77 | 5 | 122 | 273 | 41 | 193 | 1.20e-17 | 79.3 |
| Msa1372830 | MtrunA17_Chr4g0012691 | 37.500 | 152 | 67 | 4 | 125 | 274 | 220 | 345 | 1.54e-17 | 82.0 |
| Msa1372830 | MtrunA17_Chr4g0012791 | 29.614 | 233 | 129 | 6 | 67 | 274 | 158 | 380 | 4.54e-15 | 75.1 |
| Msa1372830 | MtrunA17_Chr4g0061301 | 35.359 | 181 | 59 | 7 | 125 | 281 | 348 | 494 | 6.39e-15 | 74.7 |
| Msa1372830 | MtrunA17_Chr1g0188901 | 35.366 | 164 | 79 | 6 | 113 | 273 | 46 | 185 | 2.22e-14 | 70.1 |
| Msa1372830 | MtrunA17_Chr1g0152661 | 30.435 | 207 | 92 | 4 | 67 | 273 | 39 | 193 | 1.90e-13 | 68.6 |
| Msa1372830 | MtrunA17_Chr1g0207451 | 34.667 | 150 | 62 | 3 | 125 | 274 | 83 | 196 | 1.58e-12 | 66.2 |
| Msa1372830 | MtrunA17_Chr3g0134711 | 28.054 | 221 | 92 | 6 | 60 | 273 | 41 | 201 | 9.50e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372830 | AT2G28200.1 | 40.952 | 315 | 129 | 11 | 6 | 293 | 2 | 286 | 1.64e-51 | 171 |
| Msa1372830 | AT5G03510.1 | 35.762 | 302 | 141 | 9 | 19 | 293 | 17 | 292 | 1.45e-45 | 155 |
| Msa1372830 | AT5G04390.1 | 31.854 | 383 | 137 | 13 | 10 | 293 | 5 | 362 | 1.74e-34 | 128 |
| Msa1372830 | AT3G10470.1 | 34.559 | 272 | 126 | 6 | 59 | 285 | 96 | 360 | 2.00e-27 | 110 |
| Msa1372830 | AT2G37430.1 | 33.484 | 221 | 77 | 7 | 61 | 278 | 7 | 160 | 3.70e-22 | 91.3 |
| Msa1372830 | AT3G60580.1 | 31.179 | 263 | 124 | 11 | 23 | 284 | 82 | 288 | 1.08e-18 | 84.3 |
| Msa1372830 | AT3G53600.1 | 37.419 | 155 | 50 | 4 | 125 | 278 | 49 | 157 | 1.47e-18 | 81.6 |
| Msa1372830 | AT2G45120.1 | 31.280 | 211 | 90 | 7 | 68 | 277 | 148 | 304 | 3.12e-17 | 80.9 |
| Msa1372830 | AT1G49900.1 | 35.780 | 109 | 34 | 3 | 123 | 231 | 748 | 820 | 2.23e-12 | 67.8 |
| Msa1372830 | AT3G19580.1 | 33.133 | 166 | 65 | 8 | 67 | 231 | 67 | 187 | 2.91e-12 | 65.9 |
| Msa1372830 | AT3G19580.2 | 33.133 | 166 | 65 | 8 | 67 | 231 | 67 | 187 | 2.91e-12 | 65.9 |
| Msa1372830 | AT5G67450.1 | 33.750 | 160 | 80 | 3 | 125 | 275 | 97 | 239 | 7.86e-12 | 64.3 |
Find 86 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACACCCATGAACCTTATT+AGG | 0.190387 | tig0019325:-58387 | None:intergenic |
| GGCTAATTGTTTGATTCTTC+TGG | 0.203387 | tig0019325:+57987 | Msa1372830:CDS |
| TATCAACTTCAAACCTAATA+AGG | 0.231751 | tig0019325:+58374 | Msa1372830:CDS |
| CGATTCGACGTTTCAGTTTC+CGG | 0.243464 | tig0019325:+58611 | Msa1372830:CDS |
| CTCGAGTTTCTCTTGAATTA+AGG | 0.276923 | tig0019325:+58340 | Msa1372830:CDS |
| GTGAATTTGAACATGAAAAT+AGG | 0.278615 | tig0019325:+58283 | Msa1372830:CDS |
| GTCTAGGAATGTTCTTGAAT+TGG | 0.330690 | tig0019325:+58554 | Msa1372830:CDS |
| GTTGGTGGGTTGCCATTATT+AGG | 0.332911 | tig0019325:+58635 | Msa1372830:CDS |
| ATGGACATGGAAGGAATTAT+AGG | 0.340892 | tig0019325:+57775 | Msa1372830:CDS |
| AACAACGTTGGTGTTGTTAC+AGG | 0.344318 | tig0019325:+58510 | Msa1372830:CDS |
| AGCAAGAGGACTAATATTCT+TGG | 0.352029 | tig0019325:-58316 | None:intergenic |
| TGCTCAAGTGCCACTGGAGG+TGG | 0.369286 | tig0019325:+57907 | Msa1372830:CDS |
| TTCCATTCATTTCAAGCGTT+GGG | 0.375944 | tig0019325:+58174 | Msa1372830:CDS |
| TTCAAACCTAATAAGGTTCA+TGG | 0.378517 | tig0019325:+58381 | Msa1372830:CDS |
| ATCCAACGTTGGCCTAATAA+TGG | 0.380442 | tig0019325:-58647 | None:intergenic |
| TGAATTGGACCTTAACCTTC+CGG | 0.389601 | tig0019325:+58569 | Msa1372830:CDS |
| CCTCCGGTGCCGGAAGGTTA+AGG | 0.413234 | tig0019325:-58578 | None:intergenic |
| TGTTGTAACCATCCACTTGT+TGG | 0.424922 | tig0019325:-58083 | None:intergenic |
| GAAAGCGAACGAAACGGTTA+AGG | 0.426921 | tig0019325:+57839 | Msa1372830:CDS |
| AAGATGTTCATGTTAGGTCT+AGG | 0.445757 | tig0019325:+58538 | Msa1372830:CDS |
| GACGTTTCAGTTTCCGGCGT+TGG | 0.448103 | tig0019325:+58617 | Msa1372830:CDS |
| TTTCCATTCATTTCAAGCGT+TGG | 0.453765 | tig0019325:+58173 | Msa1372830:CDS |
| CTTCTGGCTCAAGGAAGAAC+GGG | 0.457858 | tig0019325:+58003 | Msa1372830:CDS |
| ATGTTCAAATTCACCGGTGG+TGG | 0.457962 | tig0019325:-58274 | None:intergenic |
| GCAAGAGGACTAATATTCTT+GGG | 0.460139 | tig0019325:-58315 | None:intergenic |
| CACCCAACGCTTGAAATGAA+TGG | 0.472542 | tig0019325:-58176 | None:intergenic |
| GAGGAACATGTTAATGATGT+TGG | 0.472717 | tig0019325:+57802 | Msa1372830:CDS |
| CCACTTGTTGGCCGTTGTTG+TGG | 0.476786 | tig0019325:-58071 | None:intergenic |
| CAACAAAATAACAATTGAAA+AGG | 0.479506 | tig0019325:+58101 | Msa1372830:CDS |
| GTTTCAGTTTCCGGCGTTGG+TGG | 0.482549 | tig0019325:+58620 | Msa1372830:CDS |
| GTAGCAGTTGCCACGGTGAC+AGG | 0.485951 | tig0019325:-57871 | None:intergenic |
| CGGAGATCTTCCTCCGGTGC+CGG | 0.488269 | tig0019325:-58588 | None:intergenic |
| TTCACATCAGGTCAAGCATT+GGG | 0.490157 | tig0019325:+58426 | Msa1372830:CDS |
| AGGAACATGTTAATGATGTT+GGG | 0.501178 | tig0019325:+57803 | Msa1372830:CDS |
| TTTCAGTTTCCGGCGTTGGT+GGG | 0.503347 | tig0019325:+58621 | Msa1372830:CDS |
| GGACCTTAACCTTCCGGCAC+CGG | 0.507435 | tig0019325:+58575 | Msa1372830:CDS |
| TCGAGCTGCTCAAGTGCCAC+TGG | 0.507708 | tig0019325:+57901 | Msa1372830:CDS |
| TCAAGTGCCACTGGAGGTGG+TGG | 0.508718 | tig0019325:+57910 | Msa1372830:CDS |
| GGCCGTTGTTGTGGAGGTGG+TGG | 0.514785 | tig0019325:-58062 | None:intergenic |
| CATTCATTTCAAGCGTTGGG+TGG | 0.518965 | tig0019325:+58177 | Msa1372830:CDS |
| TGTGGAGCTGAATTCACATC+AGG | 0.521653 | tig0019325:+58414 | Msa1372830:CDS |
| GTTGGCCGTTGTTGTGGAGG+TGG | 0.522596 | tig0019325:-58065 | None:intergenic |
| TTCTTGCTCAGTGTCATCAA+AGG | 0.527374 | tig0019325:-57950 | None:intergenic |
| TGTTTGATTCTTCTGGCTCA+AGG | 0.533403 | tig0019325:+57994 | Msa1372830:CDS |
| TTGTCGCGGTCGCGGAGGTG+AGG | 0.537270 | tig0019325:-58247 | None:intergenic |
| ATTCACATCAGGTCAAGCAT+TGG | 0.538410 | tig0019325:+58425 | Msa1372830:CDS |
| CTTGTTGGCCGTTGTTGTGG+AGG | 0.539786 | tig0019325:-58068 | None:intergenic |
| TCAAAGGAAAGCGAACGAAA+CGG | 0.541935 | tig0019325:+57833 | Msa1372830:CDS |
| CTCAGTGTCATCAAAGGTGG+TGG | 0.547013 | tig0019325:-57944 | None:intergenic |
| TCTTCTGGCTCAAGGAAGAA+CGG | 0.548703 | tig0019325:+58002 | Msa1372830:CDS |
| GTGGTGATTTGTCGCGGTCG+CGG | 0.549407 | tig0019325:-58255 | None:intergenic |
| GCAAGAAGAGGAAGCAGACA+TGG | 0.561196 | tig0019325:+57966 | Msa1372830:CDS |
| AACATCATTAACATGTTCCT+CGG | 0.565470 | tig0019325:-57800 | None:intergenic |
| TCAAACCTAATAAGGTTCAT+GGG | 0.566961 | tig0019325:+58382 | Msa1372830:CDS |
| GTTCATGGGTGTTCAATATG+TGG | 0.567866 | tig0019325:+58396 | Msa1372830:CDS |
| TTGCTCAGTGTCATCAAAGG+TGG | 0.571081 | tig0019325:-57947 | None:intergenic |
| GATGTTGGGCACCTCATCAA+AGG | 0.576365 | tig0019325:+57817 | Msa1372830:CDS |
| CCACAACAACGGCCAACAAG+TGG | 0.585250 | tig0019325:+58071 | Msa1372830:CDS |
| AGAGAAACTCGAGGAGCAAG+AGG | 0.585638 | tig0019325:-58330 | None:intergenic |
| CCGCGACAAATCACCACCAC+CGG | 0.586036 | tig0019325:+58261 | Msa1372830:CDS |
| GTTTCTCTTGAATTAAGGTG+TGG | 0.591781 | tig0019325:+58345 | Msa1372830:CDS |
| TGATGACACTGAGCAAGAAG+AGG | 0.591813 | tig0019325:+57954 | Msa1372830:CDS |
| AGGAAGAACGGGAAGAGAAG+AGG | 0.593891 | tig0019325:+58014 | Msa1372830:CDS |
| CCTTAACCTTCCGGCACCGG+AGG | 0.594600 | tig0019325:+58578 | Msa1372830:CDS |
| GATCTTCCTCCGGTGCCGGA+AGG | 0.594929 | tig0019325:-58584 | None:intergenic |
| TTGTCTAAAATGGACATGGA+AGG | 0.601540 | tig0019325:+57766 | None:intergenic |
| TTGTGGAGGTGGTGGTTCTG+AGG | 0.603082 | tig0019325:-58054 | None:intergenic |
| AAGCATTGGGTGGTCACATG+AGG | 0.609394 | tig0019325:+58439 | Msa1372830:CDS |
| TCGTTCGCTTTCCTTTGATG+AGG | 0.611523 | tig0019325:-57828 | None:intergenic |
| TAATGGCAACCCACCAACGC+CGG | 0.618418 | tig0019325:-58630 | None:intergenic |
| GAATCGCGGAGATCTTCCTC+CGG | 0.624286 | tig0019325:-58594 | None:intergenic |
| GTGATTTGTCGCGGTCGCGG+AGG | 0.628904 | tig0019325:-58252 | None:intergenic |
| AACAACGGCCAACAAGTGGA+TGG | 0.629201 | tig0019325:+58075 | Msa1372830:CDS |
| AGCTGCTCAAGTGCCACTGG+AGG | 0.629481 | tig0019325:+57904 | Msa1372830:CDS |
| TTCATGTTCAAATTCACCGG+TGG | 0.633752 | tig0019325:-58277 | None:intergenic |
| GATGTTGTCTAAAATGGACA+TGG | 0.636077 | tig0019325:+57762 | None:intergenic |
| AAACGATCCACCACCTCCAG+TGG | 0.642817 | tig0019325:-57917 | None:intergenic |
| AACCACCACCTCCACAACAA+CGG | 0.646757 | tig0019325:+58060 | Msa1372830:CDS |
| GAAACTGAAACGTCGAATCG+CGG | 0.658540 | tig0019325:-58608 | None:intergenic |
| CCGGTGGTGGTGATTTGTCG+CGG | 0.660219 | tig0019325:-58261 | None:intergenic |
| GCAGTTGTCTCCTGTCACCG+TGG | 0.669727 | tig0019325:+57861 | Msa1372830:CDS |
| TGTCATCGTAGCAGTTGCCA+CGG | 0.678106 | tig0019325:-57878 | None:intergenic |
| ACATCAGGTCAAGCATTGGG+TGG | 0.680038 | tig0019325:+58429 | Msa1372830:CDS |
| GGTGGTGGTTCTGAGGACGA+CGG | 0.683349 | tig0019325:-58047 | None:intergenic |
| CTTAATTCAAGAGAAACTCG+AGG | 0.731434 | tig0019325:-58339 | None:intergenic |
| GGAAGGAATTATAGGCACCG+AGG | 0.764139 | tig0019325:+57783 | Msa1372830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACAAAATAACAATTGAAA+AGG | + | tig0019325:58101-58120 | Msa1372830:CDS | 20.0% |
| !! | CAACAAAATAACAATTGAAA+AGG | + | tig0019325:58101-58120 | Msa1372830:CDS | 20.0% |
| ! | ATTGAAAAGGAGACAAAAAA+CGG | + | tig0019325:58114-58133 | Msa1372830:CDS | 25.0% |
| ! | CTTGAAATGAATGGAAAAAA+CGG | - | tig0019325:58170-58189 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTCTTTCATCTT+TGG | - | tig0019325:58225-58244 | None:intergenic | 25.0% |
| !! | ATTTTCATGTTCAAATTCAC+CGG | - | tig0019325:58283-58302 | None:intergenic | 25.0% |
| ! | GTGAATTTGAACATGAAAAT+AGG | + | tig0019325:58283-58302 | Msa1372830:CDS | 25.0% |
| ! | TATCAACTTCAAACCTAATA+AGG | + | tig0019325:58374-58393 | Msa1372830:CDS | 25.0% |
| ! | ATTGAAAAGGAGACAAAAAA+CGG | + | tig0019325:58114-58133 | Msa1372830:CDS | 25.0% |
| ! | CTTGAAATGAATGGAAAAAA+CGG | - | tig0019325:58170-58189 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTCTTTCATCTT+TGG | - | tig0019325:58225-58244 | None:intergenic | 25.0% |
| !! | ATTTTCATGTTCAAATTCAC+CGG | - | tig0019325:58283-58302 | None:intergenic | 25.0% |
| ! | GTGAATTTGAACATGAAAAT+AGG | + | tig0019325:58283-58302 | Msa1372830:CDS | 25.0% |
| ! | TATCAACTTCAAACCTAATA+AGG | + | tig0019325:58374-58393 | Msa1372830:CDS | 25.0% |
| AACATCATTAACATGTTCCT+CGG | - | tig0019325:57803-57822 | None:intergenic | 30.0% | |
| AGGAACATGTTAATGATGTT+GGG | + | tig0019325:57803-57822 | Msa1372830:CDS | 30.0% | |
| TTCAAACCTAATAAGGTTCA+TGG | + | tig0019325:58381-58400 | Msa1372830:CDS | 30.0% | |
| TCAAACCTAATAAGGTTCAT+GGG | + | tig0019325:58382-58401 | Msa1372830:CDS | 30.0% | |
| AACAACAAAAACAACAACGT+TGG | + | tig0019325:58498-58517 | Msa1372830:CDS | 30.0% | |
| !!! | GTTTTGAAGATGTTCATGTT+AGG | + | tig0019325:58532-58551 | Msa1372830:CDS | 30.0% |
| AACATCATTAACATGTTCCT+CGG | - | tig0019325:57803-57822 | None:intergenic | 30.0% | |
| AGGAACATGTTAATGATGTT+GGG | + | tig0019325:57803-57822 | Msa1372830:CDS | 30.0% | |
| TTCAAACCTAATAAGGTTCA+TGG | + | tig0019325:58381-58400 | Msa1372830:CDS | 30.0% | |
| TCAAACCTAATAAGGTTCAT+GGG | + | tig0019325:58382-58401 | Msa1372830:CDS | 30.0% | |
| AACAACAAAAACAACAACGT+TGG | + | tig0019325:58498-58517 | Msa1372830:CDS | 30.0% | |
| !!! | GTTTTGAAGATGTTCATGTT+AGG | + | tig0019325:58532-58551 | Msa1372830:CDS | 30.0% |
| ATGGACATGGAAGGAATTAT+AGG | + | tig0019325:57775-57794 | Msa1372830:CDS | 35.0% | |
| GAGGAACATGTTAATGATGT+TGG | + | tig0019325:57802-57821 | Msa1372830:CDS | 35.0% | |
| GGCTAATTGTTTGATTCTTC+TGG | + | tig0019325:57987-58006 | Msa1372830:CDS | 35.0% | |
| TTTCCATTCATTTCAAGCGT+TGG | + | tig0019325:58173-58192 | Msa1372830:CDS | 35.0% | |
| TTCCATTCATTTCAAGCGTT+GGG | + | tig0019325:58174-58193 | Msa1372830:CDS | 35.0% | |
| GCAAGAGGACTAATATTCTT+GGG | - | tig0019325:58318-58337 | None:intergenic | 35.0% | |
| AGCAAGAGGACTAATATTCT+TGG | - | tig0019325:58319-58338 | None:intergenic | 35.0% | |
| CTTAATTCAAGAGAAACTCG+AGG | - | tig0019325:58342-58361 | None:intergenic | 35.0% | |
| CTCGAGTTTCTCTTGAATTA+AGG | + | tig0019325:58340-58359 | Msa1372830:CDS | 35.0% | |
| GTTTCTCTTGAATTAAGGTG+TGG | + | tig0019325:58345-58364 | Msa1372830:CDS | 35.0% | |
| AAGATGTTCATGTTAGGTCT+AGG | + | tig0019325:58538-58557 | Msa1372830:CDS | 35.0% | |
| GTCTAGGAATGTTCTTGAAT+TGG | + | tig0019325:58554-58573 | Msa1372830:CDS | 35.0% | |
| ATGGACATGGAAGGAATTAT+AGG | + | tig0019325:57775-57794 | Msa1372830:CDS | 35.0% | |
| GAGGAACATGTTAATGATGT+TGG | + | tig0019325:57802-57821 | Msa1372830:CDS | 35.0% | |
| GGCTAATTGTTTGATTCTTC+TGG | + | tig0019325:57987-58006 | Msa1372830:CDS | 35.0% | |
| TTTCCATTCATTTCAAGCGT+TGG | + | tig0019325:58173-58192 | Msa1372830:CDS | 35.0% | |
| TTCCATTCATTTCAAGCGTT+GGG | + | tig0019325:58174-58193 | Msa1372830:CDS | 35.0% | |
| GCAAGAGGACTAATATTCTT+GGG | - | tig0019325:58318-58337 | None:intergenic | 35.0% | |
| AGCAAGAGGACTAATATTCT+TGG | - | tig0019325:58319-58338 | None:intergenic | 35.0% | |
| CTTAATTCAAGAGAAACTCG+AGG | - | tig0019325:58342-58361 | None:intergenic | 35.0% | |
| CTCGAGTTTCTCTTGAATTA+AGG | + | tig0019325:58340-58359 | Msa1372830:CDS | 35.0% | |
| GTTTCTCTTGAATTAAGGTG+TGG | + | tig0019325:58345-58364 | Msa1372830:CDS | 35.0% | |
| AAGATGTTCATGTTAGGTCT+AGG | + | tig0019325:58538-58557 | Msa1372830:CDS | 35.0% | |
| GTCTAGGAATGTTCTTGAAT+TGG | + | tig0019325:58554-58573 | Msa1372830:CDS | 35.0% | |
| TCAAAGGAAAGCGAACGAAA+CGG | + | tig0019325:57833-57852 | Msa1372830:CDS | 40.0% | |
| TTCTTGCTCAGTGTCATCAA+AGG | - | tig0019325:57953-57972 | None:intergenic | 40.0% | |
| !! | TGTTTGATTCTTCTGGCTCA+AGG | + | tig0019325:57994-58013 | Msa1372830:CDS | 40.0% |
| TGTTGTAACCATCCACTTGT+TGG | - | tig0019325:58086-58105 | None:intergenic | 40.0% | |
| TTCATGTTCAAATTCACCGG+TGG | - | tig0019325:58280-58299 | None:intergenic | 40.0% | |
| GAACACCCATGAACCTTATT+AGG | - | tig0019325:58390-58409 | None:intergenic | 40.0% | |
| GTTCATGGGTGTTCAATATG+TGG | + | tig0019325:58396-58415 | Msa1372830:CDS | 40.0% | |
| ATTCACATCAGGTCAAGCAT+TGG | + | tig0019325:58425-58444 | Msa1372830:CDS | 40.0% | |
| TTCACATCAGGTCAAGCATT+GGG | + | tig0019325:58426-58445 | Msa1372830:CDS | 40.0% | |
| !! | AACAACGTTGGTGTTGTTAC+AGG | + | tig0019325:58510-58529 | Msa1372830:CDS | 40.0% |
| TGAATTGGACCTTAACCTTC+CGG | + | tig0019325:58569-58588 | Msa1372830:CDS | 40.0% | |
| TCAAAGGAAAGCGAACGAAA+CGG | + | tig0019325:57833-57852 | Msa1372830:CDS | 40.0% | |
| TTCTTGCTCAGTGTCATCAA+AGG | - | tig0019325:57953-57972 | None:intergenic | 40.0% | |
| !! | TGTTTGATTCTTCTGGCTCA+AGG | + | tig0019325:57994-58013 | Msa1372830:CDS | 40.0% |
| TGTTGTAACCATCCACTTGT+TGG | - | tig0019325:58086-58105 | None:intergenic | 40.0% | |
| TTCATGTTCAAATTCACCGG+TGG | - | tig0019325:58280-58299 | None:intergenic | 40.0% | |
| GAACACCCATGAACCTTATT+AGG | - | tig0019325:58390-58409 | None:intergenic | 40.0% | |
| GTTCATGGGTGTTCAATATG+TGG | + | tig0019325:58396-58415 | Msa1372830:CDS | 40.0% | |
| ATTCACATCAGGTCAAGCAT+TGG | + | tig0019325:58425-58444 | Msa1372830:CDS | 40.0% | |
| TTCACATCAGGTCAAGCATT+GGG | + | tig0019325:58426-58445 | Msa1372830:CDS | 40.0% | |
| !! | AACAACGTTGGTGTTGTTAC+AGG | + | tig0019325:58510-58529 | Msa1372830:CDS | 40.0% |
| TGAATTGGACCTTAACCTTC+CGG | + | tig0019325:58569-58588 | Msa1372830:CDS | 40.0% | |
| TCGTTCGCTTTCCTTTGATG+AGG | - | tig0019325:57831-57850 | None:intergenic | 45.0% | |
| GAAAGCGAACGAAACGGTTA+AGG | + | tig0019325:57839-57858 | Msa1372830:CDS | 45.0% | |
| TTGCTCAGTGTCATCAAAGG+TGG | - | tig0019325:57950-57969 | None:intergenic | 45.0% | |
| TGATGACACTGAGCAAGAAG+AGG | + | tig0019325:57954-57973 | Msa1372830:CDS | 45.0% | |
| !! | TCTTCTGGCTCAAGGAAGAA+CGG | + | tig0019325:58002-58021 | Msa1372830:CDS | 45.0% |
| CACCCAACGCTTGAAATGAA+TGG | - | tig0019325:58179-58198 | None:intergenic | 45.0% | |
| !! | CATTCATTTCAAGCGTTGGG+TGG | + | tig0019325:58177-58196 | Msa1372830:CDS | 45.0% |
| ATGTTCAAATTCACCGGTGG+TGG | - | tig0019325:58277-58296 | None:intergenic | 45.0% | |
| TGTGGAGCTGAATTCACATC+AGG | + | tig0019325:58414-58433 | Msa1372830:CDS | 45.0% | |
| GAAACTGAAACGTCGAATCG+CGG | - | tig0019325:58611-58630 | None:intergenic | 45.0% | |
| CGATTCGACGTTTCAGTTTC+CGG | + | tig0019325:58611-58630 | Msa1372830:CDS | 45.0% | |
| TCGTTCGCTTTCCTTTGATG+AGG | - | tig0019325:57831-57850 | None:intergenic | 45.0% | |
| GAAAGCGAACGAAACGGTTA+AGG | + | tig0019325:57839-57858 | Msa1372830:CDS | 45.0% | |
| TTGCTCAGTGTCATCAAAGG+TGG | - | tig0019325:57950-57969 | None:intergenic | 45.0% | |
| TGATGACACTGAGCAAGAAG+AGG | + | tig0019325:57954-57973 | Msa1372830:CDS | 45.0% | |
| !! | TCTTCTGGCTCAAGGAAGAA+CGG | + | tig0019325:58002-58021 | Msa1372830:CDS | 45.0% |
| CACCCAACGCTTGAAATGAA+TGG | - | tig0019325:58179-58198 | None:intergenic | 45.0% | |
| !! | CATTCATTTCAAGCGTTGGG+TGG | + | tig0019325:58177-58196 | Msa1372830:CDS | 45.0% |
| ATGTTCAAATTCACCGGTGG+TGG | - | tig0019325:58277-58296 | None:intergenic | 45.0% | |
| TGTGGAGCTGAATTCACATC+AGG | + | tig0019325:58414-58433 | Msa1372830:CDS | 45.0% | |
| GAAACTGAAACGTCGAATCG+CGG | - | tig0019325:58611-58630 | None:intergenic | 45.0% | |
| CGATTCGACGTTTCAGTTTC+CGG | + | tig0019325:58611-58630 | Msa1372830:CDS | 45.0% | |
| ! | GGAAGGAATTATAGGCACCG+AGG | + | tig0019325:57783-57802 | Msa1372830:CDS | 50.0% |
| GATGTTGGGCACCTCATCAA+AGG | + | tig0019325:57817-57836 | Msa1372830:CDS | 50.0% | |
| TGTCATCGTAGCAGTTGCCA+CGG | - | tig0019325:57881-57900 | None:intergenic | 50.0% | |
| CTCAGTGTCATCAAAGGTGG+TGG | - | tig0019325:57947-57966 | None:intergenic | 50.0% | |
| GCAAGAAGAGGAAGCAGACA+TGG | + | tig0019325:57966-57985 | Msa1372830:CDS | 50.0% | |
| !! | CTTCTGGCTCAAGGAAGAAC+GGG | + | tig0019325:58003-58022 | Msa1372830:CDS | 50.0% |
| AGGAAGAACGGGAAGAGAAG+AGG | + | tig0019325:58014-58033 | Msa1372830:CDS | 50.0% | |
| AACCACCACCTCCACAACAA+CGG | + | tig0019325:58060-58079 | Msa1372830:CDS | 50.0% | |
| AACAACGGCCAACAAGTGGA+TGG | + | tig0019325:58075-58094 | Msa1372830:CDS | 50.0% | |
| AGAGAAACTCGAGGAGCAAG+AGG | - | tig0019325:58333-58352 | None:intergenic | 50.0% | |
| !! | ACATCAGGTCAAGCATTGGG+TGG | + | tig0019325:58429-58448 | Msa1372830:CDS | 50.0% |
| !! | AAGCATTGGGTGGTCACATG+AGG | + | tig0019325:58439-58458 | Msa1372830:CDS | 50.0% |
| !! | TTTCAGTTTCCGGCGTTGGT+GGG | + | tig0019325:58621-58640 | Msa1372830:CDS | 50.0% |
| ! | GGAAGGAATTATAGGCACCG+AGG | + | tig0019325:57783-57802 | Msa1372830:CDS | 50.0% |
| GATGTTGGGCACCTCATCAA+AGG | + | tig0019325:57817-57836 | Msa1372830:CDS | 50.0% | |
| TGTCATCGTAGCAGTTGCCA+CGG | - | tig0019325:57881-57900 | None:intergenic | 50.0% | |
| CTCAGTGTCATCAAAGGTGG+TGG | - | tig0019325:57947-57966 | None:intergenic | 50.0% | |
| GCAAGAAGAGGAAGCAGACA+TGG | + | tig0019325:57966-57985 | Msa1372830:CDS | 50.0% | |
| !! | CTTCTGGCTCAAGGAAGAAC+GGG | + | tig0019325:58003-58022 | Msa1372830:CDS | 50.0% |
| AGGAAGAACGGGAAGAGAAG+AGG | + | tig0019325:58014-58033 | Msa1372830:CDS | 50.0% | |
| AACCACCACCTCCACAACAA+CGG | + | tig0019325:58060-58079 | Msa1372830:CDS | 50.0% | |
| AACAACGGCCAACAAGTGGA+TGG | + | tig0019325:58075-58094 | Msa1372830:CDS | 50.0% | |
| AGAGAAACTCGAGGAGCAAG+AGG | - | tig0019325:58333-58352 | None:intergenic | 50.0% | |
| !! | ACATCAGGTCAAGCATTGGG+TGG | + | tig0019325:58429-58448 | Msa1372830:CDS | 50.0% |
| !! | AAGCATTGGGTGGTCACATG+AGG | + | tig0019325:58439-58458 | Msa1372830:CDS | 50.0% |
| !! | TTTCAGTTTCCGGCGTTGGT+GGG | + | tig0019325:58621-58640 | Msa1372830:CDS | 50.0% |
| AAACGATCCACCACCTCCAG+TGG | - | tig0019325:57920-57939 | None:intergenic | 55.0% | |
| ! | TTGTGGAGGTGGTGGTTCTG+AGG | - | tig0019325:58057-58076 | None:intergenic | 55.0% |
| CTTGTTGGCCGTTGTTGTGG+AGG | - | tig0019325:58071-58090 | None:intergenic | 55.0% | |
| ! | CCACTTGTTGGCCGTTGTTG+TGG | - | tig0019325:58074-58093 | None:intergenic | 55.0% |
| CCACAACAACGGCCAACAAG+TGG | + | tig0019325:58071-58090 | Msa1372830:CDS | 55.0% | |
| GAATCGCGGAGATCTTCCTC+CGG | - | tig0019325:58597-58616 | None:intergenic | 55.0% | |
| GACGTTTCAGTTTCCGGCGT+TGG | + | tig0019325:58617-58636 | Msa1372830:CDS | 55.0% | |
| ! | GTTTCAGTTTCCGGCGTTGG+TGG | + | tig0019325:58620-58639 | Msa1372830:CDS | 55.0% |
| TAATGGCAACCCACCAACGC+CGG | - | tig0019325:58633-58652 | None:intergenic | 55.0% | |
| AAACGATCCACCACCTCCAG+TGG | - | tig0019325:57920-57939 | None:intergenic | 55.0% | |
| ! | TTGTGGAGGTGGTGGTTCTG+AGG | - | tig0019325:58057-58076 | None:intergenic | 55.0% |
| CTTGTTGGCCGTTGTTGTGG+AGG | - | tig0019325:58071-58090 | None:intergenic | 55.0% | |
| ! | CCACTTGTTGGCCGTTGTTG+TGG | - | tig0019325:58074-58093 | None:intergenic | 55.0% |
| CCACAACAACGGCCAACAAG+TGG | + | tig0019325:58071-58090 | Msa1372830:CDS | 55.0% | |
| GAATCGCGGAGATCTTCCTC+CGG | - | tig0019325:58597-58616 | None:intergenic | 55.0% | |
| GACGTTTCAGTTTCCGGCGT+TGG | + | tig0019325:58617-58636 | Msa1372830:CDS | 55.0% | |
| ! | GTTTCAGTTTCCGGCGTTGG+TGG | + | tig0019325:58620-58639 | Msa1372830:CDS | 55.0% |
| TAATGGCAACCCACCAACGC+CGG | - | tig0019325:58633-58652 | None:intergenic | 55.0% | |
| GCAGTTGTCTCCTGTCACCG+TGG | + | tig0019325:57861-57880 | Msa1372830:CDS | 60.0% | |
| GTAGCAGTTGCCACGGTGAC+AGG | - | tig0019325:57874-57893 | None:intergenic | 60.0% | |
| TCGAGCTGCTCAAGTGCCAC+TGG | + | tig0019325:57901-57920 | Msa1372830:CDS | 60.0% | |
| ! | AGCTGCTCAAGTGCCACTGG+AGG | + | tig0019325:57904-57923 | Msa1372830:CDS | 60.0% |
| ! | TGCTCAAGTGCCACTGGAGG+TGG | + | tig0019325:57907-57926 | Msa1372830:CDS | 60.0% |
| ! | TCAAGTGCCACTGGAGGTGG+TGG | + | tig0019325:57910-57929 | Msa1372830:CDS | 60.0% |
| !! | GGTGGTGGTTCTGAGGACGA+CGG | - | tig0019325:58050-58069 | None:intergenic | 60.0% |
| GTTGGCCGTTGTTGTGGAGG+TGG | - | tig0019325:58068-58087 | None:intergenic | 60.0% | |
| ! | GTGGTGATTTGTCGCGGTCG+CGG | - | tig0019325:58258-58277 | None:intergenic | 60.0% |
| ! | CCGGTGGTGGTGATTTGTCG+CGG | - | tig0019325:58264-58283 | None:intergenic | 60.0% |
| CCGCGACAAATCACCACCAC+CGG | + | tig0019325:58261-58280 | Msa1372830:CDS | 60.0% | |
| GGACCTTAACCTTCCGGCAC+CGG | + | tig0019325:58575-58594 | Msa1372830:CDS | 60.0% | |
| GCAGTTGTCTCCTGTCACCG+TGG | + | tig0019325:57861-57880 | Msa1372830:CDS | 60.0% | |
| GTAGCAGTTGCCACGGTGAC+AGG | - | tig0019325:57874-57893 | None:intergenic | 60.0% | |
| TCGAGCTGCTCAAGTGCCAC+TGG | + | tig0019325:57901-57920 | Msa1372830:CDS | 60.0% | |
| ! | AGCTGCTCAAGTGCCACTGG+AGG | + | tig0019325:57904-57923 | Msa1372830:CDS | 60.0% |
| ! | TGCTCAAGTGCCACTGGAGG+TGG | + | tig0019325:57907-57926 | Msa1372830:CDS | 60.0% |
| ! | TCAAGTGCCACTGGAGGTGG+TGG | + | tig0019325:57910-57929 | Msa1372830:CDS | 60.0% |
| !! | GGTGGTGGTTCTGAGGACGA+CGG | - | tig0019325:58050-58069 | None:intergenic | 60.0% |
| GTTGGCCGTTGTTGTGGAGG+TGG | - | tig0019325:58068-58087 | None:intergenic | 60.0% | |
| ! | GTGGTGATTTGTCGCGGTCG+CGG | - | tig0019325:58258-58277 | None:intergenic | 60.0% |
| ! | CCGGTGGTGGTGATTTGTCG+CGG | - | tig0019325:58264-58283 | None:intergenic | 60.0% |
| CCGCGACAAATCACCACCAC+CGG | + | tig0019325:58261-58280 | Msa1372830:CDS | 60.0% | |
| GGACCTTAACCTTCCGGCAC+CGG | + | tig0019325:58575-58594 | Msa1372830:CDS | 60.0% | |
| GGCCGTTGTTGTGGAGGTGG+TGG | - | tig0019325:58065-58084 | None:intergenic | 65.0% | |
| ! | GTGATTTGTCGCGGTCGCGG+AGG | - | tig0019325:58255-58274 | None:intergenic | 65.0% |
| ! | CCTCCGGTGCCGGAAGGTTA+AGG | - | tig0019325:58581-58600 | None:intergenic | 65.0% |
| ! | CCTTAACCTTCCGGCACCGG+AGG | + | tig0019325:58578-58597 | Msa1372830:CDS | 65.0% |
| ! | GATCTTCCTCCGGTGCCGGA+AGG | - | tig0019325:58587-58606 | None:intergenic | 65.0% |
| CGGAGATCTTCCTCCGGTGC+CGG | - | tig0019325:58591-58610 | None:intergenic | 65.0% | |
| GGCCGTTGTTGTGGAGGTGG+TGG | - | tig0019325:58065-58084 | None:intergenic | 65.0% | |
| ! | GTGATTTGTCGCGGTCGCGG+AGG | - | tig0019325:58255-58274 | None:intergenic | 65.0% |
| ! | CCTCCGGTGCCGGAAGGTTA+AGG | - | tig0019325:58581-58600 | None:intergenic | 65.0% |
| ! | CCTTAACCTTCCGGCACCGG+AGG | + | tig0019325:58578-58597 | Msa1372830:CDS | 65.0% |
| ! | GATCTTCCTCCGGTGCCGGA+AGG | - | tig0019325:58587-58606 | None:intergenic | 65.0% |
| CGGAGATCTTCCTCCGGTGC+CGG | - | tig0019325:58591-58610 | None:intergenic | 65.0% | |
| TTGTCGCGGTCGCGGAGGTG+AGG | - | tig0019325:58250-58269 | None:intergenic | 70.0% | |
| TTGTCGCGGTCGCGGAGGTG+AGG | - | tig0019325:58250-58269 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019325 | gene | 57775 | 58656 | 57775 | ID=Msa1372830;Name=Msa1372830 |
| tig0019325 | mRNA | 57775 | 58656 | 57775 | ID=Msa1372830-mRNA-1;Parent=Msa1372830;Name=Msa1372830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|293 |
| tig0019325 | exon | 57775 | 58656 | 57775 | ID=Msa1372830-mRNA-1:exon:2949;Parent=Msa1372830-mRNA-1 |
| tig0019325 | CDS | 57775 | 58656 | 57775 | ID=Msa1372830-mRNA-1:cds;Parent=Msa1372830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
