Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375880 | KEH18339.1 | 97.425 | 233 | 6 | 0 | 1 | 233 | 1 | 233 | 2.20e-165 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375880 | sp|Q94IA6|C90D1_ARATH | 65.152 | 198 | 69 | 0 | 36 | 233 | 50 | 247 | 4.11e-91 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375880 | A0A072TLG7 | 97.425 | 233 | 6 | 0 | 1 | 233 | 1 | 233 | 1.05e-165 | 473 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1275090 | Msa1375880 | 0.843955 | 1.019248e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375880 | MtrunA17_Chr8g0341951 | 97.425 | 233 | 6 | 0 | 1 | 233 | 1 | 233 | 6.79e-168 | 471 |
| Msa1375880 | MtrunA17_Chr8g0372411 | 53.571 | 196 | 90 | 1 | 38 | 233 | 40 | 234 | 1.38e-76 | 238 |
| Msa1375880 | MtrunA17_Chr5g0404881 | 47.748 | 222 | 109 | 3 | 12 | 231 | 13 | 229 | 5.83e-73 | 221 |
| Msa1375880 | MtrunA17_Chr8g0373441 | 40.000 | 225 | 128 | 3 | 8 | 231 | 10 | 228 | 3.78e-52 | 174 |
| Msa1375880 | MtrunA17_Chr5g0403931 | 35.776 | 232 | 142 | 3 | 2 | 231 | 5 | 231 | 4.42e-47 | 162 |
| Msa1375880 | MtrunA17_Chr3g0113321 | 37.374 | 198 | 122 | 1 | 34 | 231 | 26 | 221 | 2.35e-44 | 155 |
| Msa1375880 | MtrunA17_Chr6g0478161 | 29.130 | 230 | 162 | 1 | 4 | 233 | 18 | 246 | 3.77e-44 | 154 |
| Msa1375880 | MtrunA17_Chr7g0226771 | 31.602 | 231 | 149 | 3 | 3 | 231 | 6 | 229 | 3.00e-42 | 149 |
| Msa1375880 | MtrunA17_Chr7g0219961 | 34.328 | 201 | 126 | 2 | 33 | 233 | 29 | 223 | 2.02e-39 | 141 |
| Msa1375880 | MtrunA17_Chr5g0436981 | 36.774 | 155 | 96 | 1 | 32 | 186 | 23 | 175 | 6.87e-39 | 133 |
| Msa1375880 | MtrunA17_Chr3g0078411 | 33.168 | 202 | 128 | 3 | 33 | 233 | 29 | 224 | 3.42e-37 | 135 |
| Msa1375880 | MtrunA17_Chr6g0455461 | 32.673 | 202 | 129 | 3 | 33 | 233 | 29 | 224 | 1.99e-36 | 133 |
| Msa1375880 | MtrunA17_Chr5g0397971 | 29.185 | 233 | 153 | 3 | 5 | 233 | 2 | 226 | 5.98e-34 | 127 |
| Msa1375880 | MtrunA17_Chr5g0443401 | 31.553 | 206 | 131 | 5 | 32 | 233 | 33 | 232 | 4.83e-30 | 116 |
| Msa1375880 | MtrunA17_Chr4g0044851 | 31.156 | 199 | 131 | 3 | 36 | 233 | 36 | 229 | 3.87e-27 | 108 |
| Msa1375880 | MtrunA17_Chr5g0443731 | 27.885 | 208 | 142 | 3 | 28 | 232 | 22 | 224 | 2.38e-25 | 103 |
| Msa1375880 | MtrunA17_Chr3g0089361 | 30.097 | 206 | 137 | 4 | 32 | 233 | 35 | 237 | 2.86e-25 | 102 |
| Msa1375880 | MtrunA17_Chr1g0164371 | 30.808 | 198 | 131 | 3 | 36 | 233 | 43 | 234 | 3.00e-25 | 102 |
| Msa1375880 | MtrunA17_Chr2g0293421 | 27.885 | 208 | 146 | 3 | 28 | 233 | 37 | 242 | 1.92e-24 | 100 |
| Msa1375880 | MtrunA17_Chr2g0293411 | 26.250 | 240 | 168 | 5 | 1 | 233 | 1 | 238 | 2.47e-24 | 100 |
| Msa1375880 | MtrunA17_Chr3g0107501 | 31.068 | 206 | 136 | 4 | 30 | 233 | 27 | 228 | 3.98e-24 | 99.8 |
| Msa1375880 | MtrunA17_Chr5g0408181 | 27.803 | 223 | 152 | 5 | 13 | 233 | 9 | 224 | 5.94e-24 | 99.4 |
| Msa1375880 | MtrunA17_Chr8g0369791 | 28.992 | 238 | 152 | 8 | 1 | 233 | 1 | 226 | 7.10e-24 | 99.0 |
| Msa1375880 | MtrunA17_Chr4g0044841 | 27.536 | 207 | 144 | 3 | 28 | 233 | 29 | 230 | 7.90e-24 | 99.0 |
| Msa1375880 | MtrunA17_Chr1g0153371 | 28.216 | 241 | 151 | 8 | 1 | 233 | 1 | 227 | 6.89e-23 | 96.3 |
| Msa1375880 | MtrunA17_Chr3g0141801 | 27.273 | 231 | 155 | 5 | 6 | 233 | 17 | 237 | 9.83e-23 | 95.9 |
| Msa1375880 | MtrunA17_Chr8g0388921 | 26.724 | 232 | 155 | 4 | 6 | 233 | 11 | 231 | 2.11e-22 | 94.7 |
| Msa1375880 | MtrunA17_Chr3g0107511 | 26.364 | 220 | 161 | 1 | 12 | 231 | 8 | 226 | 6.80e-22 | 93.6 |
| Msa1375880 | MtrunA17_Chr1g0161671 | 26.667 | 225 | 158 | 5 | 12 | 233 | 7 | 227 | 1.09e-21 | 91.3 |
| Msa1375880 | MtrunA17_Chr8g0381551 | 25.703 | 249 | 161 | 7 | 1 | 233 | 1 | 241 | 9.04e-21 | 89.0 |
| Msa1375880 | MtrunA17_Chr8g0381541 | 25.703 | 249 | 161 | 7 | 1 | 233 | 1 | 241 | 1.92e-20 | 89.4 |
| Msa1375880 | MtrunA17_Chr8g0381571 | 25.703 | 249 | 161 | 7 | 1 | 233 | 1 | 241 | 2.31e-20 | 89.0 |
| Msa1375880 | MtrunA17_Chr5g0400421 | 27.723 | 202 | 141 | 4 | 36 | 233 | 44 | 244 | 6.91e-19 | 84.7 |
| Msa1375880 | MtrunA17_Chr3g0089291 | 27.215 | 158 | 112 | 2 | 76 | 233 | 1 | 155 | 1.96e-18 | 80.9 |
| Msa1375880 | MtrunA17_Chr3g0089351 | 27.848 | 158 | 111 | 2 | 76 | 233 | 1 | 155 | 2.06e-18 | 83.2 |
| Msa1375880 | MtrunA17_Chr5g0400411 | 26.531 | 196 | 139 | 4 | 36 | 228 | 44 | 237 | 5.82e-18 | 82.0 |
| Msa1375880 | MtrunA17_Chr8g0380471 | 24.576 | 236 | 167 | 6 | 1 | 232 | 1 | 229 | 8.96e-18 | 81.6 |
| Msa1375880 | MtrunA17_Chr8g0372711 | 25.792 | 221 | 148 | 5 | 21 | 233 | 31 | 243 | 1.39e-13 | 69.3 |
| Msa1375880 | MtrunA17_Chr4g0013471 | 25.820 | 244 | 164 | 11 | 1 | 233 | 1 | 238 | 2.33e-13 | 68.6 |
| Msa1375880 | MtrunA17_Chr4g0000171 | 26.293 | 232 | 157 | 8 | 4 | 231 | 15 | 236 | 3.45e-13 | 67.8 |
| Msa1375880 | MtrunA17_Chr1g0161651 | 23.684 | 266 | 155 | 6 | 13 | 233 | 17 | 279 | 1.78e-12 | 65.9 |
| Msa1375880 | MtrunA17_Chr4g0000161 | 26.638 | 229 | 154 | 9 | 7 | 231 | 18 | 236 | 3.34e-12 | 65.1 |
| Msa1375880 | MtrunA17_Chr6g0463561 | 33.636 | 110 | 71 | 2 | 31 | 139 | 33 | 141 | 1.23e-11 | 61.6 |
| Msa1375880 | MtrunA17_Chr8g0339861 | 25.962 | 208 | 144 | 6 | 32 | 233 | 37 | 240 | 3.87e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375880 | AT3G13730.2 | 65.152 | 198 | 69 | 0 | 36 | 233 | 50 | 247 | 9.32e-93 | 280 |
| Msa1375880 | AT3G13730.1 | 65.152 | 198 | 69 | 0 | 36 | 233 | 50 | 247 | 4.18e-92 | 279 |
| Msa1375880 | AT4G36380.2 | 52.792 | 197 | 93 | 0 | 37 | 233 | 69 | 265 | 9.41e-77 | 238 |
| Msa1375880 | AT4G36380.1 | 52.792 | 197 | 93 | 0 | 37 | 233 | 69 | 265 | 3.56e-75 | 236 |
| Msa1375880 | AT5G05690.2 | 39.594 | 197 | 117 | 1 | 37 | 233 | 31 | 225 | 2.41e-46 | 159 |
| Msa1375880 | AT3G50660.2 | 36.816 | 201 | 126 | 1 | 32 | 231 | 34 | 234 | 4.06e-46 | 159 |
| Msa1375880 | AT5G05690.1 | 39.594 | 197 | 117 | 1 | 37 | 233 | 31 | 225 | 8.27e-46 | 159 |
| Msa1375880 | AT3G50660.1 | 36.816 | 201 | 126 | 1 | 32 | 231 | 34 | 234 | 1.37e-45 | 159 |
| Msa1375880 | AT1G73340.1 | 30.317 | 221 | 153 | 1 | 13 | 233 | 20 | 239 | 9.90e-43 | 150 |
| Msa1375880 | AT5G38970.3 | 32.000 | 200 | 131 | 1 | 34 | 233 | 31 | 225 | 4.94e-35 | 129 |
| Msa1375880 | AT5G14400.4 | 33.679 | 193 | 127 | 1 | 42 | 233 | 1 | 193 | 5.87e-35 | 127 |
| Msa1375880 | AT5G38970.1 | 32.000 | 200 | 131 | 1 | 34 | 233 | 31 | 225 | 7.38e-35 | 129 |
| Msa1375880 | AT5G14400.3 | 33.679 | 193 | 127 | 1 | 42 | 233 | 1 | 193 | 1.27e-34 | 127 |
| Msa1375880 | AT5G14400.2 | 33.679 | 193 | 127 | 1 | 42 | 233 | 1 | 193 | 2.30e-34 | 127 |
| Msa1375880 | AT1G12740.3 | 28.972 | 214 | 144 | 2 | 18 | 231 | 19 | 224 | 1.71e-33 | 124 |
| Msa1375880 | AT3G30180.1 | 29.515 | 227 | 149 | 3 | 7 | 233 | 10 | 225 | 4.88e-33 | 124 |
| Msa1375880 | AT1G12740.1 | 28.636 | 220 | 149 | 2 | 12 | 231 | 13 | 224 | 5.72e-33 | 124 |
| Msa1375880 | AT1G12740.4 | 28.636 | 220 | 149 | 2 | 12 | 231 | 13 | 224 | 6.42e-33 | 124 |
| Msa1375880 | AT3G19270.1 | 28.755 | 233 | 158 | 3 | 1 | 233 | 1 | 225 | 1.28e-31 | 120 |
| Msa1375880 | AT3G19270.2 | 28.755 | 233 | 158 | 3 | 1 | 233 | 1 | 225 | 2.17e-31 | 120 |
| Msa1375880 | AT1G12740.2 | 27.876 | 226 | 149 | 3 | 12 | 231 | 13 | 230 | 1.08e-30 | 118 |
| Msa1375880 | AT2G29090.4 | 29.353 | 201 | 136 | 3 | 32 | 231 | 44 | 239 | 9.08e-28 | 108 |
| Msa1375880 | AT4G19230.1 | 29.536 | 237 | 152 | 8 | 1 | 233 | 1 | 226 | 1.85e-27 | 109 |
| Msa1375880 | AT4G19230.2 | 29.536 | 237 | 152 | 8 | 1 | 233 | 1 | 226 | 2.36e-27 | 109 |
| Msa1375880 | AT2G29090.2 | 29.353 | 201 | 136 | 3 | 32 | 231 | 44 | 239 | 7.76e-27 | 107 |
| Msa1375880 | AT2G29090.1 | 29.353 | 201 | 136 | 3 | 32 | 231 | 44 | 239 | 7.76e-27 | 107 |
| Msa1375880 | AT5G45340.2 | 30.043 | 233 | 143 | 7 | 6 | 233 | 9 | 226 | 1.34e-26 | 106 |
| Msa1375880 | AT5G45340.1 | 30.043 | 233 | 143 | 7 | 6 | 233 | 9 | 226 | 1.45e-26 | 107 |
| Msa1375880 | AT5G36110.2 | 31.707 | 205 | 129 | 6 | 36 | 233 | 33 | 233 | 1.56e-26 | 105 |
| Msa1375880 | AT5G36110.1 | 31.707 | 205 | 129 | 6 | 36 | 233 | 33 | 233 | 2.65e-26 | 106 |
| Msa1375880 | AT3G44970.2 | 32.370 | 173 | 116 | 1 | 31 | 202 | 29 | 201 | 4.03e-25 | 101 |
| Msa1375880 | AT1G05160.2 | 26.147 | 218 | 153 | 3 | 18 | 233 | 31 | 242 | 7.22e-25 | 102 |
| Msa1375880 | AT1G05160.1 | 26.147 | 218 | 153 | 3 | 18 | 233 | 31 | 242 | 7.22e-25 | 102 |
| Msa1375880 | AT3G44970.1 | 32.370 | 173 | 116 | 1 | 31 | 202 | 29 | 201 | 8.46e-25 | 102 |
| Msa1375880 | AT4G15396.4 | 28.448 | 232 | 151 | 6 | 5 | 233 | 8 | 227 | 1.08e-23 | 98.2 |
| Msa1375880 | AT5G36140.1 | 31.188 | 202 | 131 | 6 | 36 | 233 | 32 | 229 | 1.17e-23 | 97.1 |
| Msa1375880 | AT4G15396.2 | 28.448 | 232 | 151 | 6 | 5 | 233 | 8 | 227 | 1.21e-23 | 98.6 |
| Msa1375880 | AT4G15396.1 | 28.448 | 232 | 151 | 6 | 5 | 233 | 8 | 227 | 1.41e-23 | 98.6 |
| Msa1375880 | AT4G15396.3 | 28.448 | 232 | 151 | 6 | 5 | 233 | 8 | 227 | 1.86e-23 | 98.2 |
| Msa1375880 | AT1G65670.1 | 28.293 | 205 | 142 | 3 | 30 | 233 | 28 | 228 | 4.40e-23 | 97.1 |
| Msa1375880 | AT4G15300.3 | 27.391 | 230 | 149 | 6 | 7 | 233 | 4 | 218 | 1.40e-22 | 95.9 |
| Msa1375880 | AT4G15300.2 | 27.391 | 230 | 149 | 6 | 7 | 233 | 14 | 228 | 1.58e-22 | 95.5 |
| Msa1375880 | AT2G32440.2 | 26.961 | 204 | 146 | 2 | 32 | 233 | 39 | 241 | 1.69e-22 | 95.5 |
| Msa1375880 | AT2G32440.1 | 26.961 | 204 | 146 | 2 | 32 | 233 | 39 | 241 | 1.69e-22 | 95.5 |
| Msa1375880 | AT4G15393.1 | 26.407 | 231 | 157 | 4 | 5 | 233 | 8 | 227 | 7.87e-22 | 93.2 |
| Msa1375880 | AT4G15393.2 | 26.407 | 231 | 157 | 4 | 5 | 233 | 8 | 227 | 1.05e-21 | 93.2 |
| Msa1375880 | AT4G15310.1 | 24.473 | 237 | 157 | 6 | 1 | 227 | 1 | 225 | 1.18e-19 | 87.4 |
| Msa1375880 | AT2G42850.2 | 27.897 | 233 | 158 | 6 | 4 | 231 | 10 | 237 | 1.93e-19 | 86.3 |
| Msa1375880 | AT4G15300.1 | 26.383 | 235 | 147 | 7 | 7 | 230 | 4 | 223 | 3.02e-19 | 86.3 |
| Msa1375880 | AT2G42850.1 | 27.897 | 233 | 158 | 6 | 4 | 231 | 10 | 237 | 5.72e-19 | 85.5 |
| Msa1375880 | AT1G19630.2 | 21.525 | 223 | 171 | 3 | 12 | 231 | 8 | 229 | 6.54e-18 | 82.4 |
| Msa1375880 | AT1G19630.3 | 22.660 | 203 | 155 | 2 | 30 | 231 | 28 | 229 | 6.96e-18 | 82.4 |
| Msa1375880 | AT1G19630.1 | 21.525 | 223 | 171 | 3 | 12 | 231 | 8 | 229 | 7.05e-18 | 82.4 |
| Msa1375880 | AT1G78490.2 | 27.746 | 173 | 124 | 1 | 31 | 202 | 29 | 201 | 8.18e-18 | 82.0 |
| Msa1375880 | AT1G78490.1 | 27.746 | 173 | 124 | 1 | 31 | 202 | 29 | 201 | 8.67e-18 | 82.0 |
| Msa1375880 | AT5G38970.2 | 27.972 | 143 | 103 | 0 | 91 | 233 | 2 | 144 | 2.36e-17 | 80.5 |
| Msa1375880 | AT5G38970.4 | 27.972 | 143 | 103 | 0 | 91 | 233 | 2 | 144 | 2.36e-17 | 80.5 |
| Msa1375880 | AT5G48000.2 | 28.000 | 175 | 123 | 2 | 30 | 202 | 28 | 201 | 3.11e-17 | 80.5 |
| Msa1375880 | AT5G48000.4 | 28.000 | 175 | 123 | 2 | 30 | 202 | 28 | 201 | 3.11e-17 | 80.5 |
| Msa1375880 | AT5G48000.7 | 28.000 | 175 | 123 | 2 | 30 | 202 | 28 | 201 | 3.11e-17 | 80.5 |
| Msa1375880 | AT5G48000.6 | 28.000 | 175 | 123 | 2 | 30 | 202 | 28 | 201 | 3.11e-17 | 80.5 |
| Msa1375880 | AT5G48000.5 | 28.000 | 175 | 123 | 2 | 30 | 202 | 28 | 201 | 3.11e-17 | 80.5 |
| Msa1375880 | AT5G48000.3 | 28.000 | 175 | 123 | 2 | 30 | 202 | 28 | 201 | 3.11e-17 | 80.5 |
| Msa1375880 | AT5G48000.1 | 28.000 | 175 | 123 | 2 | 30 | 202 | 69 | 242 | 3.40e-17 | 80.5 |
| Msa1375880 | AT1G55940.2 | 26.214 | 206 | 147 | 4 | 30 | 231 | 38 | 242 | 7.18e-16 | 76.6 |
| Msa1375880 | AT1G55940.1 | 26.214 | 206 | 147 | 4 | 30 | 231 | 38 | 242 | 9.34e-16 | 76.3 |
| Msa1375880 | AT5G14400.1 | 28.261 | 138 | 98 | 1 | 97 | 233 | 2 | 139 | 1.28e-14 | 72.4 |
| Msa1375880 | AT5G05690.3 | 32.407 | 108 | 71 | 1 | 126 | 233 | 1 | 106 | 1.49e-12 | 66.2 |
| Msa1375880 | AT3G30290.1 | 25.625 | 160 | 115 | 2 | 75 | 233 | 3 | 159 | 4.37e-12 | 65.1 |
Find 47 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGTCTCAACAGTTAA+AGG | 0.116557 | tig0019770:+20895 | Msa1375880:CDS |
| GGAAGCTGATTTCTTTGTTT+TGG | 0.231103 | tig0019770:-20306 | Msa1375880:intergenic |
| GTGTTCAAGTCACACATATT+TGG | 0.262281 | tig0019770:+20698 | Msa1375880:CDS |
| TTGGTTCCTGGTAGGTTTAT+TGG | 0.281130 | tig0019770:-21855 | Msa1375880:intergenic |
| TACAAGAATCAATGGCAAAT+TGG | 0.299562 | tig0019770:+20948 | Msa1375880:CDS |
| TCTATGGTTTCGCCAATAAA+AGG | 0.301450 | tig0019770:-20348 | Msa1375880:intergenic |
| CAAGTCATTGATGCAGTTAA+TGG | 0.306667 | tig0019770:+20805 | Msa1375880:CDS |
| ATCAAAGTGCACAAGAAAAT+TGG | 0.311890 | tig0019770:-20246 | Msa1375880:intergenic |
| CAAACTCTATCAATCTTTAC+AGG | 0.316083 | tig0019770:+21875 | Msa1375880:CDS |
| GGTTAAGGCATTGATTAGTT+TGG | 0.319612 | tig0019770:+21764 | Msa1375880:CDS |
| AGAAGAATACATGGACTTAT+TGG | 0.330766 | tig0019770:+20866 | Msa1375880:CDS |
| GTTTCATCTTGTATGTATAT+AGG | 0.334907 | tig0019770:-20983 | Msa1375880:intergenic |
| CGCTTGGTCATGAAGCTCTC+AGG | 0.340723 | tig0019770:-20399 | Msa1375880:intergenic |
| CCAGATTGCCTTTCATGTAT+TGG | 0.344235 | tig0019770:+21743 | Msa1375880:intron |
| CTGTAAAGATTGATAGAGTT+TGG | 0.351134 | tig0019770:-21874 | Msa1375880:intergenic |
| ATCTGCATCTGTTGAAACTA+TGG | 0.355994 | tig0019770:-20729 | Msa1375880:intergenic |
| TGCCTTTCATGTATTGGTTA+AGG | 0.360416 | tig0019770:+21749 | Msa1375880:CDS |
| GGTTTATTGGCAAAGACATT+AGG | 0.365137 | tig0019770:-21842 | Msa1375880:intergenic |
| CAGCTTCCACTAGGCACTCT+TGG | 0.371339 | tig0019770:+20321 | Msa1375880:CDS |
| AGCACAAGAAACAAAATCTA+TGG | 0.379663 | tig0019770:-20364 | Msa1375880:intergenic |
| TTTGGAACCAGGTGAAGAAA+TGG | 0.404338 | tig0019770:+21782 | Msa1375880:CDS |
| GATTGATAGAGTTTGGTTCC+TGG | 0.441738 | tig0019770:-21867 | Msa1375880:intergenic |
| AACTTACATGGCGCATCGCT+TGG | 0.445087 | tig0019770:-20415 | Msa1375880:intergenic |
| AAGTCATTGATGCAGTTAAT+GGG | 0.454826 | tig0019770:+20806 | Msa1375880:CDS |
| CATCTTGTATGTATATAGGT+TGG | 0.463350 | tig0019770:-20979 | Msa1375880:intergenic |
| CATTAACTGCATCAATGACT+TGG | 0.471779 | tig0019770:-20804 | Msa1375880:intergenic |
| GAAGTATGTACAAGAATCAA+TGG | 0.481343 | tig0019770:+20940 | Msa1375880:CDS |
| AGAAGTTCCATTTCTTCACC+TGG | 0.485238 | tig0019770:-21789 | Msa1375880:intergenic |
| ATCAATGACTTGGGATAAGA+AGG | 0.505590 | tig0019770:-20794 | Msa1375880:intergenic |
| TTCCACTAGGCACTCTTGGA+TGG | 0.509240 | tig0019770:+20325 | Msa1375880:CDS |
| TCCATGTATTCTTCTTTGCA+AGG | 0.516199 | tig0019770:-20858 | Msa1375880:intergenic |
| GCATCTGTTGAAACTATGGT+AGG | 0.528354 | tig0019770:-20725 | Msa1375880:intergenic |
| TATACTACAAAGTGATGCAA+AGG | 0.530469 | tig0019770:+20763 | Msa1375880:CDS |
| ATCAATGGCAAATTGGAAAG+AGG | 0.541562 | tig0019770:+20955 | Msa1375880:CDS |
| GATAGAGTTTGGTTCCTGGT+AGG | 0.545482 | tig0019770:-21863 | Msa1375880:intergenic |
| CATGAAGCTCTCAGGGCGGT+CGG | 0.547597 | tig0019770:-20391 | Msa1375880:intergenic |
| CAAAGAAATCAGCTTCCACT+AGG | 0.548481 | tig0019770:+20312 | Msa1375880:CDS |
| ACCTTGCAAAGAAGAATACA+TGG | 0.567029 | tig0019770:+20857 | Msa1375880:CDS |
| GCTTGGTCATGAAGCTCTCA+GGG | 0.568089 | tig0019770:-20398 | Msa1375880:intergenic |
| TGCCTTAACCAATACATGAA+AGG | 0.571314 | tig0019770:-21751 | Msa1375880:intergenic |
| ATTAACTGCATCAATGACTT+GGG | 0.584123 | tig0019770:-20803 | Msa1375880:intergenic |
| GCATTGATTAGTTTGGAACC+AGG | 0.594460 | tig0019770:+21771 | Msa1375880:CDS |
| CATCTGTTGAAACTATGGTA+GGG | 0.601336 | tig0019770:-20724 | Msa1375880:intergenic |
| TACATACTTCTGCATATCTG+AGG | 0.627594 | tig0019770:-20927 | Msa1375880:intergenic |
| GGCCATCCAAGAGTGCCTAG+TGG | 0.645890 | tig0019770:-20327 | Msa1375880:intergenic |
| TCTTTGCCAATAAACCTACC+AGG | 0.667808 | tig0019770:+21849 | Msa1375880:CDS |
| TGGTCATGAAGCTCTCAGGG+CGG | 0.723334 | tig0019770:-20395 | Msa1375870:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATATATTTGGCAAT+TGG | + | tig0019770:21221-21240 | Msa1375880:intron | 15.0% |
| !! | TATATCTTAGTTATCTTTAT+AGG | + | tig0019770:21583-21602 | Msa1375880:intron | 15.0% |
| !! | ATATCTTAGTTATCTTTATA+GGG | + | tig0019770:21584-21603 | Msa1375880:intron | 15.0% |
| !! | TAAAATATATATTTGGCAAT+TGG | + | tig0019770:21221-21240 | Msa1375880:intron | 15.0% |
| !! | TATATCTTAGTTATCTTTAT+AGG | + | tig0019770:21583-21602 | Msa1375880:intron | 15.0% |
| !! | ATATCTTAGTTATCTTTATA+GGG | + | tig0019770:21584-21603 | Msa1375880:intron | 15.0% |
| !! | AAATATTAGAGTTCAAACTT+TGG | - | tig0019770:21119-21138 | Msa1375880:intergenic | 20.0% |
| !!! | CCAAATATATATTTTAGAGA+AGG | - | tig0019770:21217-21236 | Msa1375880:intergenic | 20.0% |
| !!! | CCTTCTCTAAAATATATATT+TGG | + | tig0019770:21214-21233 | Msa1375880:intron | 20.0% |
| !! | TGAGTTGTAAAAGTAATAAT+TGG | + | tig0019770:21340-21359 | Msa1375880:intron | 20.0% |
| !! | TGTTTGTAGAAATTAATTGT+TGG | - | tig0019770:21689-21708 | Msa1375880:intergenic | 20.0% |
| !! | AAAAAGAAGTGATTAATTGT+TGG | - | tig0019770:21718-21737 | Msa1375880:intergenic | 20.0% |
| !!! | ACTTCTAAAAAAACATTTTC+AGG | + | tig0019770:21806-21825 | Msa1375880:CDS | 20.0% |
| !! | AAATATTAGAGTTCAAACTT+TGG | - | tig0019770:21119-21138 | Msa1375880:intergenic | 20.0% |
| !!! | CCAAATATATATTTTAGAGA+AGG | - | tig0019770:21217-21236 | Msa1375880:intergenic | 20.0% |
| !!! | CCTTCTCTAAAATATATATT+TGG | + | tig0019770:21214-21233 | Msa1375880:intron | 20.0% |
| !! | TGAGTTGTAAAAGTAATAAT+TGG | + | tig0019770:21340-21359 | Msa1375880:intron | 20.0% |
| !! | TGTTTGTAGAAATTAATTGT+TGG | - | tig0019770:21689-21708 | Msa1375880:intergenic | 20.0% |
| !! | AAAAAGAAGTGATTAATTGT+TGG | - | tig0019770:21718-21737 | Msa1375880:intergenic | 20.0% |
| !!! | ACTTCTAAAAAAACATTTTC+AGG | + | tig0019770:21806-21825 | Msa1375880:CDS | 20.0% |
| ! | TTTAACTCACTTTCATTCAT+AGG | + | tig0019770:20464-20483 | Msa1375880:intron | 25.0% |
| ! | GTTTCATCTTGTATGTATAT+AGG | - | tig0019770:20986-21005 | Msa1375880:intergenic | 25.0% |
| ! | CATACAAGATGAAACAAAAA+AGG | + | tig0019770:20991-21010 | Msa1375880:CDS | 25.0% |
| !! | ATATTTTACCTTCAATCTCA+TGG | + | tig0019770:21133-21152 | Msa1375880:intron | 25.0% |
| ! | AACAACTTGAACATAGAAAA+AGG | - | tig0019770:21252-21271 | Msa1375880:intergenic | 25.0% |
| !! | TTTGTCACATGATTTTTGAA+TGG | - | tig0019770:21288-21307 | Msa1375880:intergenic | 25.0% |
| ! | TGATCAAATTATCTATCTAG+CGG | + | tig0019770:21363-21382 | Msa1375880:intron | 25.0% |
| ! | GTTTAGATTAGGGATAAATT+TGG | + | tig0019770:21391-21410 | Msa1375880:intron | 25.0% |
| ! | ATATCATGTTGAAACAAAGT+TGG | - | tig0019770:21539-21558 | Msa1375880:intergenic | 25.0% |
| ! | TTTAACTCACTTTCATTCAT+AGG | + | tig0019770:20464-20483 | Msa1375880:intron | 25.0% |
| ! | GTTTCATCTTGTATGTATAT+AGG | - | tig0019770:20986-21005 | Msa1375880:intergenic | 25.0% |
| ! | CATACAAGATGAAACAAAAA+AGG | + | tig0019770:20991-21010 | Msa1375880:CDS | 25.0% |
| !! | ATATTTTACCTTCAATCTCA+TGG | + | tig0019770:21133-21152 | Msa1375880:intron | 25.0% |
| ! | AACAACTTGAACATAGAAAA+AGG | - | tig0019770:21252-21271 | Msa1375880:intergenic | 25.0% |
| !! | TTTGTCACATGATTTTTGAA+TGG | - | tig0019770:21288-21307 | Msa1375880:intergenic | 25.0% |
| ! | TGATCAAATTATCTATCTAG+CGG | + | tig0019770:21363-21382 | Msa1375880:intron | 25.0% |
| ! | GTTTAGATTAGGGATAAATT+TGG | + | tig0019770:21391-21410 | Msa1375880:intron | 25.0% |
| ! | ATATCATGTTGAAACAAAGT+TGG | - | tig0019770:21539-21558 | Msa1375880:intergenic | 25.0% |
| ATCAAAGTGCACAAGAAAAT+TGG | - | tig0019770:20249-20268 | Msa0002860:intergenic | 30.0% | |
| AGCACAAGAAACAAAATCTA+TGG | - | tig0019770:20367-20386 | Msa1375880:intergenic | 30.0% | |
| ! | TGTATGATGATGAACTTACA+TGG | - | tig0019770:20430-20449 | Msa1375880:intergenic | 30.0% |
| !!! | GAGATTGTTTGTTTTTGACA+AGG | + | tig0019770:20634-20653 | Msa1375880:intron | 30.0% |
| !!! | TTGTTTTTGACAAGGATTTG+TGG | + | tig0019770:20642-20661 | Msa1375880:intron | 30.0% |
| TATACTACAAAGTGATGCAA+AGG | + | tig0019770:20763-20782 | Msa1375880:CDS | 30.0% | |
| ATTAACTGCATCAATGACTT+GGG | - | tig0019770:20806-20825 | Msa1375880:intergenic | 30.0% | |
| AAGTCATTGATGCAGTTAAT+GGG | + | tig0019770:20806-20825 | Msa1375880:CDS | 30.0% | |
| ! | TCTTCTATTTTGCTCATCAA+TGG | + | tig0019770:20833-20852 | Msa1375880:CDS | 30.0% |
| AGAAGAATACATGGACTTAT+TGG | + | tig0019770:20866-20885 | Msa1375880:CDS | 30.0% | |
| GAAGTATGTACAAGAATCAA+TGG | + | tig0019770:20940-20959 | Msa1375880:CDS | 30.0% | |
| TACAAGAATCAATGGCAAAT+TGG | + | tig0019770:20948-20967 | Msa1375880:CDS | 30.0% | |
| CATCTTGTATGTATATAGGT+TGG | - | tig0019770:20982-21001 | Msa1375880:intergenic | 30.0% | |
| TTTATCTTGTGTCAGTTGAA+TGG | - | tig0019770:21178-21197 | Msa1375880:intergenic | 30.0% | |
| CTCATGCAAAAACTTAAGTA+GGG | - | tig0019770:21324-21343 | Msa1375880:intergenic | 30.0% | |
| ACTCATGCAAAAACTTAAGT+AGG | - | tig0019770:21325-21344 | Msa1375880:intergenic | 30.0% | |
| ! | AGTTTTTGTCAAAATCACAG+CGG | - | tig0019770:21432-21451 | Msa1375880:intergenic | 30.0% |
| TAGGGTTCATAATCATTTAC+AGG | + | tig0019770:21602-21621 | Msa1375880:intron | 30.0% | |
| AACCATGCTGCATTAAAAAA+AGG | + | tig0019770:21625-21644 | Msa1375880:intron | 30.0% | |
| AATTGTTGGAGTTAGTATCT+TGG | - | tig0019770:21675-21694 | Msa1375880:intergenic | 30.0% | |
| !! | CATTTTCAGGAATTTATCTC+TGG | + | tig0019770:21819-21838 | Msa1375880:CDS | 30.0% |
| CTGTAAAGATTGATAGAGTT+TGG | - | tig0019770:21877-21896 | Msa1375880:intergenic | 30.0% | |
| CAAACTCTATCAATCTTTAC+AGG | + | tig0019770:21875-21894 | Msa1375880:CDS | 30.0% | |
| ATCAAAGTGCACAAGAAAAT+TGG | - | tig0019770:20249-20268 | Msa1375880:intergenic | 30.0% | |
| AGCACAAGAAACAAAATCTA+TGG | - | tig0019770:20367-20386 | Msa1375880:intergenic | 30.0% | |
| ! | TGTATGATGATGAACTTACA+TGG | - | tig0019770:20430-20449 | Msa1375880:intergenic | 30.0% |
| !!! | GAGATTGTTTGTTTTTGACA+AGG | + | tig0019770:20634-20653 | Msa1375880:intron | 30.0% |
| !!! | TTGTTTTTGACAAGGATTTG+TGG | + | tig0019770:20642-20661 | Msa1375880:intron | 30.0% |
| TATACTACAAAGTGATGCAA+AGG | + | tig0019770:20763-20782 | Msa1375880:CDS | 30.0% | |
| ATTAACTGCATCAATGACTT+GGG | - | tig0019770:20806-20825 | Msa1375880:intergenic | 30.0% | |
| AAGTCATTGATGCAGTTAAT+GGG | + | tig0019770:20806-20825 | Msa1375880:CDS | 30.0% | |
| ! | TCTTCTATTTTGCTCATCAA+TGG | + | tig0019770:20833-20852 | Msa1375880:CDS | 30.0% |
| AGAAGAATACATGGACTTAT+TGG | + | tig0019770:20866-20885 | Msa1375880:CDS | 30.0% | |
| GAAGTATGTACAAGAATCAA+TGG | + | tig0019770:20940-20959 | Msa1375880:CDS | 30.0% | |
| TACAAGAATCAATGGCAAAT+TGG | + | tig0019770:20948-20967 | Msa1375880:CDS | 30.0% | |
| CATCTTGTATGTATATAGGT+TGG | - | tig0019770:20982-21001 | Msa1375880:intergenic | 30.0% | |
| TTTATCTTGTGTCAGTTGAA+TGG | - | tig0019770:21178-21197 | Msa1375880:intergenic | 30.0% | |
| CTCATGCAAAAACTTAAGTA+GGG | - | tig0019770:21324-21343 | Msa1375880:intergenic | 30.0% | |
| ACTCATGCAAAAACTTAAGT+AGG | - | tig0019770:21325-21344 | Msa1375880:intergenic | 30.0% | |
| ! | AGTTTTTGTCAAAATCACAG+CGG | - | tig0019770:21432-21451 | Msa1375880:intergenic | 30.0% |
| TAGGGTTCATAATCATTTAC+AGG | + | tig0019770:21602-21621 | Msa1375880:intron | 30.0% | |
| AACCATGCTGCATTAAAAAA+AGG | + | tig0019770:21625-21644 | Msa1375880:intron | 30.0% | |
| AATTGTTGGAGTTAGTATCT+TGG | - | tig0019770:21675-21694 | Msa1375880:intergenic | 30.0% | |
| !! | CATTTTCAGGAATTTATCTC+TGG | + | tig0019770:21819-21838 | Msa1375880:CDS | 30.0% |
| CTGTAAAGATTGATAGAGTT+TGG | - | tig0019770:21877-21896 | Msa1375880:intergenic | 30.0% | |
| CAAACTCTATCAATCTTTAC+AGG | + | tig0019770:21875-21894 | Msa1375880:CDS | 30.0% | |
| !! | GGAAGCTGATTTCTTTGTTT+TGG | - | tig0019770:20309-20328 | Msa0002860:intergenic | 35.0% |
| TCTATGGTTTCGCCAATAAA+AGG | - | tig0019770:20351-20370 | Msa1375880:intergenic | 35.0% | |
| ! | TTTTACAACTGTCTCTCTGA+GGG | - | tig0019770:20571-20590 | Msa1375880:intergenic | 35.0% |
| ! | ATTTTACAACTGTCTCTCTG+AGG | - | tig0019770:20572-20591 | Msa1375880:intergenic | 35.0% |
| TCAGAGAGACAGTTGTAAAA+TGG | + | tig0019770:20571-20590 | Msa1375880:intron | 35.0% | |
| CAAAAACAAACAATCTCGCA+CGG | - | tig0019770:20631-20650 | Msa1375880:intergenic | 35.0% | |
| GTGTTCAAGTCACACATATT+TGG | + | tig0019770:20698-20717 | Msa1375880:CDS | 35.0% | |
| CATCTGTTGAAACTATGGTA+GGG | - | tig0019770:20727-20746 | Msa1375880:intergenic | 35.0% | |
| ATCTGCATCTGTTGAAACTA+TGG | - | tig0019770:20732-20751 | Msa1375880:intergenic | 35.0% | |
| ! | ATCAATGACTTGGGATAAGA+AGG | - | tig0019770:20797-20816 | Msa1375880:intergenic | 35.0% |
| CATTAACTGCATCAATGACT+TGG | - | tig0019770:20807-20826 | Msa1375880:intergenic | 35.0% | |
| CAAGTCATTGATGCAGTTAA+TGG | + | tig0019770:20805-20824 | Msa1375880:CDS | 35.0% | |
| ACCTTGCAAAGAAGAATACA+TGG | + | tig0019770:20857-20876 | Msa1375880:CDS | 35.0% | |
| TCCATGTATTCTTCTTTGCA+AGG | - | tig0019770:20861-20880 | Msa1375880:intergenic | 35.0% | |
| CTTCAAGTCTCAACAGTTAA+AGG | + | tig0019770:20895-20914 | Msa1375880:CDS | 35.0% | |
| TACATACTTCTGCATATCTG+AGG | - | tig0019770:20930-20949 | Msa1375880:intergenic | 35.0% | |
| ATCAATGGCAAATTGGAAAG+AGG | + | tig0019770:20955-20974 | Msa1375880:CDS | 35.0% | |
| AGAGAGAAGCAAACAAAGAT+AGG | - | tig0019770:21067-21086 | Msa1375880:intergenic | 35.0% | |
| AAACTTAAGTAGGGAAAGGA+AGG | - | tig0019770:21315-21334 | Msa1375880:intergenic | 35.0% | |
| GCAAAAACTTAAGTAGGGAA+AGG | - | tig0019770:21319-21338 | Msa1375880:intergenic | 35.0% | |
| TAGCGGTGAATGTTTAGATT+AGG | + | tig0019770:21380-21399 | Msa1375880:intron | 35.0% | |
| AGCGGTGAATGTTTAGATTA+GGG | + | tig0019770:21381-21400 | Msa1375880:intron | 35.0% | |
| GGATAAATTTGGCACAATCA+CGG | + | tig0019770:21402-21421 | Msa1375880:intron | 35.0% | |
| !!! | CTCCTTTTTTTAATGCAGCA+TGG | - | tig0019770:21630-21649 | Msa1375880:intergenic | 35.0% |
| GGAGTTAGTATCTTGGAAAA+TGG | - | tig0019770:21668-21687 | Msa1375880:intergenic | 35.0% | |
| AATACATGAAAGGCAATCTG+GGG | - | tig0019770:21744-21763 | Msa1375880:intergenic | 35.0% | |
| CAATACATGAAAGGCAATCT+GGG | - | tig0019770:21745-21764 | Msa1375880:intergenic | 35.0% | |
| !! | TGCCTTTCATGTATTGGTTA+AGG | + | tig0019770:21749-21768 | Msa1375880:CDS | 35.0% |
| TGCCTTAACCAATACATGAA+AGG | - | tig0019770:21754-21773 | Msa1375880:intergenic | 35.0% | |
| !! | GGTTAAGGCATTGATTAGTT+TGG | + | tig0019770:21764-21783 | Msa1375880:CDS | 35.0% |
| GGTTTATTGGCAAAGACATT+AGG | - | tig0019770:21845-21864 | Msa1375880:intergenic | 35.0% | |
| !! | GGAAGCTGATTTCTTTGTTT+TGG | - | tig0019770:20309-20328 | Msa1375880:intergenic | 35.0% |
| TCTATGGTTTCGCCAATAAA+AGG | - | tig0019770:20351-20370 | Msa1375880:intergenic | 35.0% | |
| ! | TTTTACAACTGTCTCTCTGA+GGG | - | tig0019770:20571-20590 | Msa1375880:intergenic | 35.0% |
| ! | ATTTTACAACTGTCTCTCTG+AGG | - | tig0019770:20572-20591 | Msa1375880:intergenic | 35.0% |
| TCAGAGAGACAGTTGTAAAA+TGG | + | tig0019770:20571-20590 | Msa1375880:intron | 35.0% | |
| CAAAAACAAACAATCTCGCA+CGG | - | tig0019770:20631-20650 | Msa1375880:intergenic | 35.0% | |
| GTGTTCAAGTCACACATATT+TGG | + | tig0019770:20698-20717 | Msa1375880:CDS | 35.0% | |
| CATCTGTTGAAACTATGGTA+GGG | - | tig0019770:20727-20746 | Msa1375880:intergenic | 35.0% | |
| ATCTGCATCTGTTGAAACTA+TGG | - | tig0019770:20732-20751 | Msa1375880:intergenic | 35.0% | |
| ! | ATCAATGACTTGGGATAAGA+AGG | - | tig0019770:20797-20816 | Msa1375880:intergenic | 35.0% |
| CATTAACTGCATCAATGACT+TGG | - | tig0019770:20807-20826 | Msa1375880:intergenic | 35.0% | |
| CAAGTCATTGATGCAGTTAA+TGG | + | tig0019770:20805-20824 | Msa1375880:CDS | 35.0% | |
| ACCTTGCAAAGAAGAATACA+TGG | + | tig0019770:20857-20876 | Msa1375880:CDS | 35.0% | |
| TCCATGTATTCTTCTTTGCA+AGG | - | tig0019770:20861-20880 | Msa1375880:intergenic | 35.0% | |
| CTTCAAGTCTCAACAGTTAA+AGG | + | tig0019770:20895-20914 | Msa1375880:CDS | 35.0% | |
| TACATACTTCTGCATATCTG+AGG | - | tig0019770:20930-20949 | Msa1375880:intergenic | 35.0% | |
| ATCAATGGCAAATTGGAAAG+AGG | + | tig0019770:20955-20974 | Msa1375880:CDS | 35.0% | |
| AGAGAGAAGCAAACAAAGAT+AGG | - | tig0019770:21067-21086 | Msa1375880:intergenic | 35.0% | |
| AAACTTAAGTAGGGAAAGGA+AGG | - | tig0019770:21315-21334 | Msa1375880:intergenic | 35.0% | |
| GCAAAAACTTAAGTAGGGAA+AGG | - | tig0019770:21319-21338 | Msa1375880:intergenic | 35.0% | |
| TAGCGGTGAATGTTTAGATT+AGG | + | tig0019770:21380-21399 | Msa1375880:intron | 35.0% | |
| AGCGGTGAATGTTTAGATTA+GGG | + | tig0019770:21381-21400 | Msa1375880:intron | 35.0% | |
| GGATAAATTTGGCACAATCA+CGG | + | tig0019770:21402-21421 | Msa1375880:intron | 35.0% | |
| !!! | CTCCTTTTTTTAATGCAGCA+TGG | - | tig0019770:21630-21649 | Msa1375880:intergenic | 35.0% |
| GGAGTTAGTATCTTGGAAAA+TGG | - | tig0019770:21668-21687 | Msa1375880:intergenic | 35.0% | |
| AATACATGAAAGGCAATCTG+GGG | - | tig0019770:21744-21763 | Msa1375880:intergenic | 35.0% | |
| CAATACATGAAAGGCAATCT+GGG | - | tig0019770:21745-21764 | Msa1375880:intergenic | 35.0% | |
| !! | TGCCTTTCATGTATTGGTTA+AGG | + | tig0019770:21749-21768 | Msa1375880:CDS | 35.0% |
| TGCCTTAACCAATACATGAA+AGG | - | tig0019770:21754-21773 | Msa1375880:intergenic | 35.0% | |
| !! | GGTTAAGGCATTGATTAGTT+TGG | + | tig0019770:21764-21783 | Msa1375880:CDS | 35.0% |
| GGTTTATTGGCAAAGACATT+AGG | - | tig0019770:21845-21864 | Msa1375880:intergenic | 35.0% | |
| CAAAGAAATCAGCTTCCACT+AGG | + | tig0019770:20312-20331 | Msa1375880:CDS | 40.0% | |
| ! | ACTCTTGGATGGCCTTTTAT+TGG | + | tig0019770:20336-20355 | Msa1375880:CDS | 40.0% |
| GTCTCTTGAGCTTCATAGAA+AGG | - | tig0019770:20498-20517 | Msa1375880:intergenic | 40.0% | |
| TTTACAACTGTCTCTCTGAG+GGG | - | tig0019770:20570-20589 | Msa1375880:intergenic | 40.0% | |
| ! | GTGTTGTTGCAAACTGTTGT+AGG | + | tig0019770:20666-20685 | Msa1375880:intron | 40.0% |
| GTTGCAAACTGTTGTAGGTA+TGG | + | tig0019770:20671-20690 | Msa1375880:intron | 40.0% | |
| GCATCTGTTGAAACTATGGT+AGG | - | tig0019770:20728-20747 | Msa1375880:intergenic | 40.0% | |
| AGAAGTCACCATGAGATTGA+AGG | - | tig0019770:21144-21163 | Msa1375880:intergenic | 40.0% | |
| CTAGAGCTTCAACAAACTCA+CGG | + | tig0019770:21457-21476 | Msa1375880:intron | 40.0% | |
| CCAATACATGAAAGGCAATC+TGG | - | tig0019770:21746-21765 | Msa1375880:intergenic | 40.0% | |
| CCAGATTGCCTTTCATGTAT+TGG | + | tig0019770:21743-21762 | Msa1375880:intron | 40.0% | |
| !! | GCATTGATTAGTTTGGAACC+AGG | + | tig0019770:21771-21790 | Msa1375880:CDS | 40.0% |
| ! | TTTGGAACCAGGTGAAGAAA+TGG | + | tig0019770:21782-21801 | Msa1375880:CDS | 40.0% |
| AGAAGTTCCATTTCTTCACC+TGG | - | tig0019770:21792-21811 | Msa1375880:intergenic | 40.0% | |
| TCTTTGCCAATAAACCTACC+AGG | + | tig0019770:21849-21868 | Msa1375880:CDS | 40.0% | |
| TTGGTTCCTGGTAGGTTTAT+TGG | - | tig0019770:21858-21877 | Msa1375880:intergenic | 40.0% | |
| ! | GATTGATAGAGTTTGGTTCC+TGG | - | tig0019770:21870-21889 | Msa1375880:intergenic | 40.0% |
| CAAAGAAATCAGCTTCCACT+AGG | + | tig0019770:20312-20331 | Msa1375880:CDS | 40.0% | |
| ! | ACTCTTGGATGGCCTTTTAT+TGG | + | tig0019770:20336-20355 | Msa1375880:CDS | 40.0% |
| GTCTCTTGAGCTTCATAGAA+AGG | - | tig0019770:20498-20517 | Msa1375880:intergenic | 40.0% | |
| TTTACAACTGTCTCTCTGAG+GGG | - | tig0019770:20570-20589 | Msa1375880:intergenic | 40.0% | |
| ! | GTGTTGTTGCAAACTGTTGT+AGG | + | tig0019770:20666-20685 | Msa1375880:intron | 40.0% |
| GTTGCAAACTGTTGTAGGTA+TGG | + | tig0019770:20671-20690 | Msa1375880:intron | 40.0% | |
| GCATCTGTTGAAACTATGGT+AGG | - | tig0019770:20728-20747 | Msa1375880:intergenic | 40.0% | |
| AGAAGTCACCATGAGATTGA+AGG | - | tig0019770:21144-21163 | Msa1375880:intergenic | 40.0% | |
| CTAGAGCTTCAACAAACTCA+CGG | + | tig0019770:21457-21476 | Msa1375880:intron | 40.0% | |
| CCAATACATGAAAGGCAATC+TGG | - | tig0019770:21746-21765 | Msa1375880:intergenic | 40.0% | |
| CCAGATTGCCTTTCATGTAT+TGG | + | tig0019770:21743-21762 | Msa1375880:intron | 40.0% | |
| !! | GCATTGATTAGTTTGGAACC+AGG | + | tig0019770:21771-21790 | Msa1375880:CDS | 40.0% |
| ! | TTTGGAACCAGGTGAAGAAA+TGG | + | tig0019770:21782-21801 | Msa1375880:CDS | 40.0% |
| AGAAGTTCCATTTCTTCACC+TGG | - | tig0019770:21792-21811 | Msa1375880:intergenic | 40.0% | |
| TCTTTGCCAATAAACCTACC+AGG | + | tig0019770:21849-21868 | Msa1375880:CDS | 40.0% | |
| TTGGTTCCTGGTAGGTTTAT+TGG | - | tig0019770:21858-21877 | Msa1375880:intergenic | 40.0% | |
| ! | GATTGATAGAGTTTGGTTCC+TGG | - | tig0019770:21870-21889 | Msa1375880:intergenic | 40.0% |
| ATTCTGACACCAACACACGT+GGG | - | tig0019770:21090-21109 | Msa1375880:intergenic | 45.0% | |
| ! | GATAGAGTTTGGTTCCTGGT+AGG | - | tig0019770:21866-21885 | Msa1375880:intergenic | 45.0% |
| ATTCTGACACCAACACACGT+GGG | - | tig0019770:21090-21109 | Msa1375880:intergenic | 45.0% | |
| ! | GATAGAGTTTGGTTCCTGGT+AGG | - | tig0019770:21866-21885 | Msa1375880:intergenic | 45.0% |
| TTCCACTAGGCACTCTTGGA+TGG | + | tig0019770:20325-20344 | Msa1375880:CDS | 50.0% | |
| GCTTGGTCATGAAGCTCTCA+GGG | - | tig0019770:20401-20420 | Msa1375880:intergenic | 50.0% | |
| AACTTACATGGCGCATCGCT+TGG | - | tig0019770:20418-20437 | Msa1375880:intergenic | 50.0% | |
| ACACACTCAGAGACTGAGAG+GGG | - | tig0019770:21033-21052 | Msa1375880:intergenic | 50.0% | |
| CACACACTCAGAGACTGAGA+GGG | - | tig0019770:21034-21053 | Msa1375880:intergenic | 50.0% | |
| ACACACACTCAGAGACTGAG+AGG | - | tig0019770:21035-21054 | Msa1375880:intergenic | 50.0% | |
| GATTCTGACACCAACACACG+TGG | - | tig0019770:21091-21110 | Msa1375880:intergenic | 50.0% | |
| TTCCACTAGGCACTCTTGGA+TGG | + | tig0019770:20325-20344 | Msa1375880:CDS | 50.0% | |
| GCTTGGTCATGAAGCTCTCA+GGG | - | tig0019770:20401-20420 | Msa1375880:intergenic | 50.0% | |
| AACTTACATGGCGCATCGCT+TGG | - | tig0019770:20418-20437 | Msa1375880:intergenic | 50.0% | |
| ACACACTCAGAGACTGAGAG+GGG | - | tig0019770:21033-21052 | Msa1375880:intergenic | 50.0% | |
| CACACACTCAGAGACTGAGA+GGG | - | tig0019770:21034-21053 | Msa1375880:intergenic | 50.0% | |
| ACACACACTCAGAGACTGAG+AGG | - | tig0019770:21035-21054 | Msa1375880:intergenic | 50.0% | |
| GATTCTGACACCAACACACG+TGG | - | tig0019770:21091-21110 | Msa1375880:intergenic | 50.0% | |
| CAGCTTCCACTAGGCACTCT+TGG | + | tig0019770:20321-20340 | Msa1375880:CDS | 55.0% | |
| TGGTCATGAAGCTCTCAGGG+CGG | - | tig0019770:20398-20417 | Msa1375880:intergenic | 55.0% | |
| CGCTTGGTCATGAAGCTCTC+AGG | - | tig0019770:20402-20421 | Msa1375880:intergenic | 55.0% | |
| CTGAGAGGGGAAGGAAACAG+AGG | - | tig0019770:21020-21039 | Msa1375880:intergenic | 55.0% | |
| ACTCAGAGACTGAGAGGGGA+AGG | - | tig0019770:21029-21048 | Msa1375880:intergenic | 55.0% | |
| CTTCTCTCTCCCACGTGTGT+TGG | + | tig0019770:21078-21097 | Msa1375880:intron | 55.0% | |
| CAGCTTCCACTAGGCACTCT+TGG | + | tig0019770:20321-20340 | Msa1375880:CDS | 55.0% | |
| TGGTCATGAAGCTCTCAGGG+CGG | - | tig0019770:20398-20417 | Msa1375880:intergenic | 55.0% | |
| CGCTTGGTCATGAAGCTCTC+AGG | - | tig0019770:20402-20421 | Msa1375880:intergenic | 55.0% | |
| CTGAGAGGGGAAGGAAACAG+AGG | - | tig0019770:21020-21039 | Msa1375880:intergenic | 55.0% | |
| ACTCAGAGACTGAGAGGGGA+AGG | - | tig0019770:21029-21048 | Msa1375880:intergenic | 55.0% | |
| CTTCTCTCTCCCACGTGTGT+TGG | + | tig0019770:21078-21097 | Msa1375880:intron | 55.0% | |
| !! | GGCCATCCAAGAGTGCCTAG+TGG | - | tig0019770:20330-20349 | Msa1375880:intergenic | 60.0% |
| CATGAAGCTCTCAGGGCGGT+CGG | - | tig0019770:20394-20413 | Msa1375880:intergenic | 60.0% | |
| !! | GGCCATCCAAGAGTGCCTAG+TGG | - | tig0019770:20330-20349 | Msa1375880:intergenic | 60.0% |
| CATGAAGCTCTCAGGGCGGT+CGG | - | tig0019770:20394-20413 | Msa1375880:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019770 | gene | 20216 | 21905 | 20216 | ID=Msa1375880;Name=Msa1375880 |
| tig0019770 | mRNA | 20216 | 21905 | 20216 | ID=Msa1375880-mRNA-1;Parent=Msa1375880;Name=Msa1375880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0|1|1|1|3|0|233 |
| tig0019770 | exon | 20216 | 20430 | 20216 | ID=Msa1375880-mRNA-1:exon:4757;Parent=Msa1375880-mRNA-1 |
| tig0019770 | exon | 20688 | 21012 | 20688 | ID=Msa1375880-mRNA-1:exon:4758;Parent=Msa1375880-mRNA-1 |
| tig0019770 | exon | 21747 | 21905 | 21747 | ID=Msa1375880-mRNA-1:exon:4759;Parent=Msa1375880-mRNA-1 |
| tig0019770 | CDS | 20216 | 20430 | 20216 | ID=Msa1375880-mRNA-1:cds;Parent=Msa1375880-mRNA-1 |
| tig0019770 | CDS | 20688 | 21012 | 20688 | ID=Msa1375880-mRNA-1:cds;Parent=Msa1375880-mRNA-1 |
| tig0019770 | CDS | 21747 | 21905 | 21747 | ID=Msa1375880-mRNA-1:cds;Parent=Msa1375880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
