Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376020 | XP_013458730.1 | 88.581 | 289 | 3 | 4 | 1 | 259 | 1 | 289 | 1.25e-174 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376020 | sp|Q9FUM1|EF1G_PRUAV | 64.041 | 292 | 72 | 5 | 1 | 259 | 1 | 292 | 4.21e-119 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376020 | A0A072USZ0 | 88.581 | 289 | 3 | 4 | 1 | 259 | 1 | 289 | 5.98e-175 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1376020 | Msa1436670 | 0.804075 | 2.570691e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376020 | MtrunA17_Chr0c12g0493651 | 88.581 | 289 | 3 | 4 | 1 | 259 | 1 | 289 | 1.15e-178 | 499 |
| Msa1376020 | MtrunA17_Chr3g0102331 | 66.782 | 289 | 66 | 4 | 1 | 259 | 1 | 289 | 7.44e-130 | 375 |
| Msa1376020 | MtrunA17_Chr2g0276951 | 70.139 | 288 | 54 | 5 | 2 | 259 | 3 | 288 | 2.30e-125 | 363 |
| Msa1376020 | MtrunA17_Chr4g0077001 | 52.708 | 277 | 37 | 7 | 1 | 259 | 1 | 201 | 2.45e-73 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376020 | AT1G09640.1 | 60.554 | 289 | 79 | 6 | 1 | 259 | 1 | 284 | 2.60e-106 | 315 |
| Msa1376020 | AT1G57720.1 | 60.900 | 289 | 77 | 7 | 1 | 259 | 1 | 283 | 2.83e-101 | 302 |
| Msa1376020 | AT1G57720.2 | 60.900 | 289 | 77 | 7 | 1 | 259 | 1 | 283 | 2.83e-101 | 302 |
| Msa1376020 | AT1G09640.2 | 53.600 | 250 | 80 | 5 | 1 | 223 | 1 | 241 | 2.60e-78 | 239 |
Find 117 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTATCTTGCAGGATTT+TGG | 0.085089 | tig0019777:-119859 | Msa1376020:intron |
| CTCTTCTTCTGCTTCTTCTT+TGG | 0.092984 | tig0019777:+120653 | None:intergenic |
| CATTCATCCATCACAAATTT+AGG | 0.098053 | tig0019777:+119623 | None:intergenic |
| TTTGAGCGGCGGGGTGATTT+AGG | 0.141977 | tig0019777:+122498 | None:intergenic |
| CACAACCCCTTTACCTTAAA+AGG | 0.198539 | tig0019777:+119668 | None:intergenic |
| GGGATTCTTGGGTTTGGGCT+TGG | 0.216459 | tig0019777:+120626 | None:intergenic |
| TCACTTACCAAAGCCATATT+AGG | 0.216629 | tig0019777:+122343 | None:intergenic |
| TCTTCTTCTGCTTCTTCTTT+GGG | 0.226224 | tig0019777:+120654 | None:intergenic |
| GGATTCTTGGGTTTGGGCTT+GGG | 0.239221 | tig0019777:+120627 | None:intergenic |
| ATCAATTAGATTCTTCATTC+TGG | 0.242038 | tig0019777:-122251 | Msa1376020:intron |
| AGAGACACCCATCTCAAAAT+TGG | 0.270995 | tig0019777:+122157 | None:intergenic |
| CCAAACTTCCGCAAGATATT+AGG | 0.289841 | tig0019777:-120801 | Msa1376020:CDS |
| TCTCCCGCTCCCTCGTTTGA+TGG | 0.291388 | tig0019777:-119259 | Msa1376020:three_prime_UTR |
| TGTATGAAAATTAAAATTCA+TGG | 0.299742 | tig0019777:-119293 | Msa1376020:three_prime_UTR |
| TTAGCCCGCAAGTATGCTTT+TGG | 0.302747 | tig0019777:-119719 | Msa1376020:three_prime_UTR |
| ATTCATCCATCACAAATTTA+GGG | 0.306943 | tig0019777:+119624 | None:intergenic |
| TTGAGCGGCGGGGTGATTTA+GGG | 0.309508 | tig0019777:+122499 | None:intergenic |
| CCTAATATCTTGCGGAAGTT+TGG | 0.312009 | tig0019777:+120801 | None:intergenic |
| AAGAAGATCAAGGGGATTCT+TGG | 0.325325 | tig0019777:+120614 | None:intergenic |
| ATCAAGGGGATTCTTGGGTT+TGG | 0.332225 | tig0019777:+120620 | None:intergenic |
| CTCTATCCAAGATTGGGATA+TGG | 0.336268 | tig0019777:-121820 | Msa1376020:CDS |
| GGTAAACGACGAACCCAAAA+AGG | 0.338365 | tig0019777:-120700 | Msa1376020:CDS |
| TCAAGGGGATTCTTGGGTTT+GGG | 0.341781 | tig0019777:+120621 | None:intergenic |
| TTCCCAGCCTAAAGATTCTA+AGG | 0.359278 | tig0019777:-120727 | Msa1376020:CDS |
| ATCCTGAAGGGTACTCTCTC+TGG | 0.365424 | tig0019777:-119826 | Msa1376020:CDS |
| TCTTTCCTATCTCAGTTTCA+TGG | 0.369699 | tig0019777:-119396 | Msa1376020:three_prime_UTR |
| CTCTCAAAGACAGGACCATC+AGG | 0.372688 | tig0019777:+122074 | None:intergenic |
| TCTATCCAAGATTGGGATAT+GGG | 0.385860 | tig0019777:-121819 | Msa1376020:CDS |
| CTCCCGCTCCCTCGTTTGAT+GGG | 0.391295 | tig0019777:-119258 | Msa1376020:three_prime_UTR |
| CTTTCCAAAAGCATACTTGC+GGG | 0.392465 | tig0019777:+119715 | None:intergenic |
| TCCTCCAAGCAAGATGATAC+TGG | 0.393435 | tig0019777:-120592 | Msa1376020:CDS |
| TCTTGGCAAGGTTCCTGTCT+TGG | 0.398617 | tig0019777:-122102 | Msa1376020:intron |
| GAGACACCCATCTCAAAATT+GGG | 0.399343 | tig0019777:+122158 | None:intergenic |
| AGTCCAGATCGACCCTAATA+TGG | 0.401910 | tig0019777:-122356 | Msa1376020:exon |
| CTCAACAACAACACCTTGTA+TGG | 0.403217 | tig0019777:-122023 | Msa1376020:CDS |
| CTCATGTCGAGAGATACTTT+TGG | 0.403977 | tig0019777:-120839 | Msa1376020:CDS |
| TAAACCCCATATCCCAATCT+TGG | 0.413330 | tig0019777:+121814 | None:intergenic |
| AGAAGATCAAGGGGATTCTT+GGG | 0.421200 | tig0019777:+120615 | None:intergenic |
| CAAGTGGCTCTATCCAAGAT+TGG | 0.421551 | tig0019777:-121827 | Msa1376020:CDS |
| AGGCAGTTAGTTTGAGCGGC+GGG | 0.422070 | tig0019777:+122488 | None:intergenic |
| AACCAGAGAGAGTACCCTTC+AGG | 0.429409 | tig0019777:+119824 | None:intergenic |
| CACTTACCAAAGCCATATTA+GGG | 0.456447 | tig0019777:+122344 | None:intergenic |
| CATATCAGATGAAGCTCAAA+AGG | 0.457442 | tig0019777:-119564 | Msa1376020:three_prime_UTR |
| GATCGACCCTAATATGGCTT+TGG | 0.467819 | tig0019777:-122350 | Msa1376020:intron |
| AAGCCATATTAGGGTCGATC+TGG | 0.471652 | tig0019777:+122353 | None:intergenic |
| TGGCCTTAGAATCTTTAGGC+TGG | 0.476785 | tig0019777:+120724 | None:intergenic |
| CAAAGAAGAAGCAGAAGAAG+AGG | 0.479600 | tig0019777:-120652 | Msa1376020:CDS |
| AAAAGCGGCAATAAGACAAA+TGG | 0.483653 | tig0019777:-119213 | Msa1376020:three_prime_UTR |
| GCCTCCAATACTTACCTAGT+TGG | 0.484176 | tig0019777:-120954 | Msa1376020:CDS |
| AAGTGGCTCTATCCAAGATT+GGG | 0.485075 | tig0019777:-121826 | Msa1376020:CDS |
| TTTGGGTTCGTCGTTTACCT+TGG | 0.489504 | tig0019777:+120704 | None:intergenic |
| CCATCAGGGGTTTCCAAGAC+AGG | 0.490090 | tig0019777:+122089 | None:intergenic |
| TATTCGCAGCAGCAGCAAGC+AGG | 0.490503 | tig0019777:-122382 | Msa1376020:intron |
| CCCTCGTTTGATGGGTTCGA+AGG | 0.495154 | tig0019777:-119250 | Msa1376020:three_prime_UTR |
| ACGACATGCAATTTGTATGT+TGG | 0.496799 | tig0019777:-120903 | Msa1376020:CDS |
| TGGTGGATTTCTTCAGCGGA+TGG | 0.498176 | tig0019777:-119744 | Msa1376020:three_prime_UTR |
| GCAAGATGATACTGGATGAC+TGG | 0.502140 | tig0019777:-120584 | Msa1376020:CDS |
| TTAGAATCTTTAGGCTGGGA+AGG | 0.503743 | tig0019777:+120729 | None:intergenic |
| ACCTTGGCCTTAGAATCTTT+AGG | 0.503994 | tig0019777:+120720 | None:intergenic |
| TTCTTCCATGAAACTGAGAT+AGG | 0.507958 | tig0019777:+119391 | None:intergenic |
| TCCAGTATCATCTTGCTTGG+AGG | 0.510179 | tig0019777:+120591 | None:intergenic |
| TCATCCAGTATCATCTTGCT+TGG | 0.513427 | tig0019777:+120588 | None:intergenic |
| ATAGCATTGCTCTCAAAGAC+AGG | 0.521702 | tig0019777:+122065 | None:intergenic |
| GCCTAAAGATTCTAAGGCCA+AGG | 0.527634 | tig0019777:-120721 | Msa1376020:CDS |
| GTGGCCAACTAGGTAAGTAT+TGG | 0.528399 | tig0019777:+120950 | None:intergenic |
| GCCAACTAGGTAAGTATTGG+AGG | 0.535307 | tig0019777:+120953 | None:intergenic |
| CCTGTCTTGGAAACCCCTGA+TGG | 0.535349 | tig0019777:-122089 | Msa1376020:CDS |
| AACCCATCAAACGAGGGAGC+GGG | 0.536659 | tig0019777:+119256 | None:intergenic |
| GGCCTTAGAATCTTTAGGCT+GGG | 0.546742 | tig0019777:+120725 | None:intergenic |
| AGAAATCCCTAAATTTGTGA+TGG | 0.546910 | tig0019777:-119630 | Msa1376020:three_prime_UTR |
| ATGTCGTTATGATGTCAGCC+AGG | 0.547555 | tig0019777:+120919 | None:intergenic |
| GGGTGACAGAGTGGCCAACT+AGG | 0.557957 | tig0019777:+120940 | None:intergenic |
| ATGACATGGAGCTGTATGAA+TGG | 0.563205 | tig0019777:-119598 | Msa1376020:three_prime_UTR |
| CCACAAAAGTGAAATTTGCA+AGG | 0.563752 | tig0019777:-119454 | Msa1376020:three_prime_UTR |
| GAACCCATCAAACGAGGGAG+CGG | 0.568904 | tig0019777:+119255 | None:intergenic |
| CTAGGTAAGTATTGGAGGCA+AGG | 0.570319 | tig0019777:+120958 | None:intergenic |
| TTTGGAAAGATGCTTGTGAT+CGG | 0.574318 | tig0019777:-119701 | Msa1376020:three_prime_UTR |
| TGCTTGGAGGAAGAAGATCA+AGG | 0.574810 | tig0019777:+120604 | None:intergenic |
| GCTTGGAGGAAGAAGATCAA+GGG | 0.576087 | tig0019777:+120605 | None:intergenic |
| ATTTAGGGATTTCTTGCCCA+CGG | 0.579224 | tig0019777:+119639 | None:intergenic |
| TGGGACATGTATGATCCTGA+AGG | 0.580791 | tig0019777:-119839 | Msa1376020:CDS |
| GTGACATTGAACAAGGTTGG+TGG | 0.584238 | tig0019777:-119761 | Msa1376020:exon |
| GGCTTCTTTGCAGATTGAAG+AGG | 0.584689 | tig0019777:+120750 | None:intergenic |
| TTTGTGACATTGAACAAGGT+TGG | 0.585414 | tig0019777:-119764 | Msa1376020:exon |
| AGGTTGGTGGATTTCTTCAG+CGG | 0.591058 | tig0019777:-119748 | Msa1376020:three_prime_UTR |
| TGACTTGGCCTAATATCTTG+CGG | 0.591227 | tig0019777:+120793 | None:intergenic |
| TCTTTCCAAAAGCATACTTG+CGG | 0.593669 | tig0019777:+119714 | None:intergenic |
| ACAGAGGCAGTTAGTTTGAG+CGG | 0.595305 | tig0019777:+122484 | None:intergenic |
| TTGATTCTAATATTAACAAG+TGG | 0.595616 | tig0019777:-121843 | Msa1376020:CDS |
| GAAGTTTGGCTGATTGACCA+AGG | 0.597999 | tig0019777:+120815 | None:intergenic |
| AGTTGGCCACTCTGTCACCC+TGG | 0.598292 | tig0019777:-120937 | Msa1376020:CDS |
| GGCAGTTAGTTTGAGCGGCG+GGG | 0.605002 | tig0019777:+122489 | None:intergenic |
| TTCAGGCTCACATTGAACAA+TGG | 0.606079 | tig0019777:-121888 | Msa1376020:intron |
| CTATCCAAGATTGGGATATG+GGG | 0.607195 | tig0019777:-121818 | Msa1376020:CDS |
| AGAGAAGACTTACTGGAGGA+AGG | 0.607826 | tig0019777:+121791 | None:intergenic |
| GGGACATGTATGATCCTGAA+GGG | 0.608052 | tig0019777:-119838 | Msa1376020:CDS |
| AATATTAGAATCAATCTCCA+AGG | 0.612021 | tig0019777:+121852 | None:intergenic |
| CAAAAGTATCTCTCGACATG+AGG | 0.612573 | tig0019777:+120840 | None:intergenic |
| AGACACCCATCTCAAAATTG+GGG | 0.615532 | tig0019777:+122159 | None:intergenic |
| AATCAAAGAAGAACCATACA+AGG | 0.618859 | tig0019777:+122010 | None:intergenic |
| TCTCAAAGACAGGACCATCA+GGG | 0.621025 | tig0019777:+122075 | None:intergenic |
| CTTGGAGGAAGAAGATCAAG+GGG | 0.623330 | tig0019777:+120606 | None:intergenic |
| CTCAAAGACAGGACCATCAG+GGG | 0.627628 | tig0019777:+122076 | None:intergenic |
| TTCCTTTGTGACATTGAACA+AGG | 0.627797 | tig0019777:-119768 | Msa1376020:exon |
| GAGGCAGTTAGTTTGAGCGG+CGG | 0.635318 | tig0019777:+122487 | None:intergenic |
| ACCTTCGAACCCATCAAACG+AGG | 0.636241 | tig0019777:+119249 | None:intergenic |
| AACCCCTTTACCTTAAAAGG+TGG | 0.642602 | tig0019777:+119671 | None:intergenic |
| AAGCACTTGGCATCCAACAG+AGG | 0.653957 | tig0019777:+119494 | None:intergenic |
| TGTCAGCCAGGGTGACAGAG+TGG | 0.662886 | tig0019777:+120931 | None:intergenic |
| AACCTTGTTCAATGTCACAA+AGG | 0.664832 | tig0019777:+119766 | None:intergenic |
| GTAAATCGCATAGCAGTGAG+AGG | 0.665176 | tig0019777:-122530 | Msa1376020:five_prime_UTR |
| CCTTCGAACCCATCAAACGA+GGG | 0.678607 | tig0019777:+119250 | None:intergenic |
| CTCGACATGAGGAAACTCTG+AGG | 0.687154 | tig0019777:+120851 | None:intergenic |
| TGTCGTTATGATGTCAGCCA+GGG | 0.694507 | tig0019777:+120920 | None:intergenic |
| GACACCCATCTCAAAATTGG+GGG | 0.700541 | tig0019777:+122160 | None:intergenic |
| GGAGCTGTATGAATGGACAA+AGG | 0.712876 | tig0019777:-119591 | Msa1376020:three_prime_UTR |
| GATGGATGAATGCTATGACA+TGG | 0.718496 | tig0019777:-119612 | Msa1376020:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAATTGATTTGATAATTA+GGG | + | tig0019777:119484-119503 | None:intergenic | 15.0% |
| !!! | ATCTAATTGATTTGATAATT+AGG | + | tig0019777:119485-119504 | None:intergenic | 15.0% |
| !!! | TTAAACAAGTGAATATATTT+TGG | - | tig0019777:120240-120259 | Msa1376020:intron | 15.0% |
| !! | GTAGCTAAATATATATTATT+GGG | - | tig0019777:120306-120325 | Msa1376020:intron | 15.0% |
| !! | TCAAAGAAAAAAATATTTGT+TGG | - | tig0019777:120358-120377 | Msa1376020:intron | 15.0% |
| !! | CAAAGAAAAAAATATTTGTT+GGG | - | tig0019777:120359-120378 | Msa1376020:intron | 15.0% |
| !!! | AAAGAAAAAAATATTTGTTG+GGG | - | tig0019777:120360-120379 | Msa1376020:intron | 15.0% |
| !! | AAATAACATATGCAAATATA+AGG | - | tig0019777:121452-121471 | Msa1376020:intron | 15.0% |
| !! | TGTATGAAAATTAAAATTCA+TGG | - | tig0019777:122452-122471 | Msa1376020:intron | 15.0% |
| !!! | GTATTTTGTTAAATTAAAAG+CGG | - | tig0019777:122517-122536 | Msa1376020:five_prime_UTR | 15.0% |
| !! | TTGATTCTAATATTAACAAG+TGG | - | tig0019777:119902-119921 | Msa1376020:intron | 20.0% |
| !!! | TTTAAAATAAGTTTGGGATA+CGG | + | tig0019777:120056-120075 | None:intergenic | 20.0% |
| !! | GGTAGCTAAATATATATTAT+TGG | - | tig0019777:120305-120324 | Msa1376020:intron | 20.0% |
| !! | TTGAAAACAATAACATCAAA+GGG | + | tig0019777:121256-121275 | None:intergenic | 20.0% |
| !! | ATTGAAAACAATAACATCAA+AGG | + | tig0019777:121257-121276 | None:intergenic | 20.0% |
| !! | AAAAATGAAAAAAATCAGCT+TGG | - | tig0019777:121725-121744 | Msa1376020:intron | 20.0% |
| !! | AAAATGAAAAAAATCAGCTT+GGG | - | tig0019777:121726-121745 | Msa1376020:intron | 20.0% |
| !!! | GATTTTTATAAGACATACAT+AGG | - | tig0019777:121847-121866 | Msa1376020:CDS | 20.0% |
| !! | TTGATTTGATAATTAGGGTT+AGG | + | tig0019777:119479-119498 | None:intergenic | 25.0% |
| ! | ATCAATTAGATTCTTCATTC+TGG | - | tig0019777:119494-119513 | Msa1376020:three_prime_UTR | 25.0% |
| ! | AATCAACAAAAATGCTTACA+AGG | - | tig0019777:119520-119539 | Msa1376020:three_prime_UTR | 25.0% |
| ! | AATATTAGAATCAATCTCCA+AGG | + | tig0019777:119896-119915 | None:intergenic | 25.0% |
| ! | TGTCAAAAATCAGTAGAAAT+AGG | + | tig0019777:120270-120289 | None:intergenic | 25.0% |
| !! | TTGACAAATAAACTCTTTTG+CGG | - | tig0019777:120284-120303 | Msa1376020:intron | 25.0% |
| ! | TCATAGAAATAAACCAACTT+GGG | + | tig0019777:120477-120496 | None:intergenic | 25.0% |
| ! | TTCATAGAAATAAACCAACT+TGG | + | tig0019777:120478-120497 | None:intergenic | 25.0% |
| ! | TAAAGTATATGTGTCAGATT+TGG | + | tig0019777:120537-120556 | None:intergenic | 25.0% |
| ! | TTAATTATTTGTCTGGATGA+AGG | - | tig0019777:120709-120728 | Msa1376020:CDS | 25.0% |
| ! | TGAAAACAATAACATCAAAG+GGG | + | tig0019777:121255-121274 | None:intergenic | 25.0% |
| !!! | TTATGTGTGTTTGTTGTTAT+GGG | + | tig0019777:121484-121503 | None:intergenic | 25.0% |
| ! | CTATGAGTACCAAATATTTA+GGG | + | tig0019777:121507-121526 | None:intergenic | 25.0% |
| ! | ACTATGAGTACCAAATATTT+AGG | + | tig0019777:121508-121527 | None:intergenic | 25.0% |
| ! | TCAGTTCAATGTTTCATATA+TGG | - | tig0019777:121696-121715 | Msa1376020:intron | 25.0% |
| ! | TTCAATGTTTCATATATGGA+GGG | - | tig0019777:121700-121719 | Msa1376020:intron | 25.0% |
| ! | AATTTCACAATGTACAATCA+GGG | + | tig0019777:121793-121812 | None:intergenic | 25.0% |
| ! | AAATTTCACAATGTACAATC+AGG | + | tig0019777:121794-121813 | None:intergenic | 25.0% |
| ! | ATTGTACATTGTGAAATTTG+CGG | - | tig0019777:121795-121814 | Msa1376020:intron | 25.0% |
| ! | ATTCATCCATCACAAATTTA+GGG | + | tig0019777:122124-122143 | None:intergenic | 25.0% |
| GATGAATGAAAAGAGTAGTA+GGG | + | tig0019777:119430-119449 | None:intergenic | 30.0% | |
| AATCAAAGAAGAACCATACA+AGG | + | tig0019777:119738-119757 | None:intergenic | 30.0% | |
| !! | ATGGATTGATTTTTCATCCT+TGG | - | tig0019777:119876-119895 | Msa1376020:intron | 30.0% |
| TTCAGTGTATGGAAAATGTT+GGG | + | tig0019777:119981-120000 | None:intergenic | 30.0% | |
| !! | TGGTTTATTTCTATGAAGCA+CGG | - | tig0019777:120481-120500 | Msa1376020:intron | 30.0% |
| ! | TGATTTTCTCACATTGTTAG+CGG | - | tig0019777:120569-120588 | Msa1376020:CDS | 30.0% |
| GTAAATAAACCTATGAAGCA+CGG | + | tig0019777:120632-120651 | None:intergenic | 30.0% | |
| CCAGACAAATAATTAAGATC+AGG | + | tig0019777:120705-120724 | None:intergenic | 30.0% | |
| CCTGATCTTAATTATTTGTC+TGG | - | tig0019777:120702-120721 | Msa1376020:CDS | 30.0% | |
| GAAAACAATAACATCAAAGG+GGG | + | tig0019777:121254-121273 | None:intergenic | 30.0% | |
| !! | GTTATGTGTGTTTGTTGTTA+TGG | + | tig0019777:121485-121504 | None:intergenic | 30.0% |
| CACACATAACCCTAAATATT+TGG | - | tig0019777:121495-121514 | Msa1376020:intron | 30.0% | |
| !! | AGAAAAGAAAAGTATTGCAG+CGG | + | tig0019777:121544-121563 | None:intergenic | 30.0% |
| ! | ATCTTTTTCCTTTCTTACCA+TGG | - | tig0019777:121597-121616 | Msa1376020:intron | 30.0% |
| GAAATCATATGTAGAAACCA+TGG | + | tig0019777:121617-121636 | None:intergenic | 30.0% | |
| ! | GATTTCTTCTTCTTTTCTAC+TGG | - | tig0019777:121631-121650 | Msa1376020:intron | 30.0% |
| GTTCAATGTTTCATATATGG+AGG | - | tig0019777:121699-121718 | Msa1376020:intron | 30.0% | |
| ATTTCACAATGTACAATCAG+GGG | + | tig0019777:121792-121811 | None:intergenic | 30.0% | |
| TTTAAATCCTTCTATCTTGC+AGG | - | tig0019777:121879-121898 | Msa1376020:CDS | 30.0% | |
| AGAAATCCCTAAATTTGTGA+TGG | - | tig0019777:122115-122134 | Msa1376020:intron | 30.0% | |
| CATTCATCCATCACAAATTT+AGG | + | tig0019777:122125-122144 | None:intergenic | 30.0% | |
| ! | TGAAGATTTTGAACCTTTTG+AGG | - | tig0019777:122223-122242 | Msa1376020:CDS | 30.0% |
| ! | GAAGATTTTGAACCTTTTGA+GGG | - | tig0019777:122224-122243 | Msa1376020:CDS | 30.0% |
| ! | AAGATTTTGAACCTTTTGAG+GGG | - | tig0019777:122225-122244 | Msa1376020:CDS | 30.0% |
| ! | AAAAATTCACTTGAAGCACT+TGG | + | tig0019777:122267-122286 | None:intergenic | 30.0% |
| ! | CGAAGAGATTTTACTTACAG+AGG | + | tig0019777:119280-119299 | None:intergenic | 35.0% |
| CTGTAAGTAAAATCTCTTCG+CGG | - | tig0019777:119280-119299 | Msa1376020:three_prime_UTR | 35.0% | |
| CACTTACCAAAGCCATATTA+GGG | + | tig0019777:119404-119423 | None:intergenic | 35.0% | |
| TCACTTACCAAAGCCATATT+AGG | + | tig0019777:119405-119424 | None:intergenic | 35.0% | |
| GGATGAATGAAAAGAGTAGT+AGG | + | tig0019777:119431-119450 | None:intergenic | 35.0% | |
| ATTAGATCAGATCGATGAAG+TGG | + | tig0019777:119452-119471 | None:intergenic | 35.0% | |
| TTGATTCATTCTCTGCATTC+AGG | - | tig0019777:119840-119859 | Msa1376020:CDS | 35.0% | |
| TCTATCCAAGATTGGGATAT+GGG | - | tig0019777:119926-119945 | Msa1376020:intron | 35.0% | |
| TCAGTGTATGGAAAATGTTG+GGG | + | tig0019777:119980-119999 | None:intergenic | 35.0% | |
| GTTCAGTGTATGGAAAATGT+TGG | + | tig0019777:119982-120001 | None:intergenic | 35.0% | |
| TCTAAATCGAGTTCAGTGTA+TGG | + | tig0019777:119992-120011 | None:intergenic | 35.0% | |
| TTAAGATTCTCTGACATGAG+GGG | + | tig0019777:120421-120440 | None:intergenic | 35.0% | |
| CTTAAGATTCTCTGACATGA+GGG | + | tig0019777:120422-120441 | None:intergenic | 35.0% | |
| TCTTAAGATTCTCTGACATG+AGG | + | tig0019777:120423-120442 | None:intergenic | 35.0% | |
| ACGACATGCAATTTGTATGT+TGG | - | tig0019777:120842-120861 | Msa1376020:CDS | 35.0% | |
| TCTTCTTCTGCTTCTTCTTT+GGG | + | tig0019777:121094-121113 | None:intergenic | 35.0% | |
| CACTAAAAACAACTTCAGAG+AGG | - | tig0019777:121201-121220 | Msa1376020:intron | 35.0% | |
| ! | TCAATTTTGTGATTGTACGC+AGG | - | tig0019777:121272-121291 | Msa1376020:intron | 35.0% |
| ! | CAATTTTGTGATTGTACGCA+GGG | - | tig0019777:121273-121292 | Msa1376020:intron | 35.0% |
| ! | AATTTTGTGATTGTACGCAG+GGG | - | tig0019777:121274-121293 | Msa1376020:intron | 35.0% |
| CAAAATTCACTCGCTACAAA+CGG | + | tig0019777:121392-121411 | None:intergenic | 35.0% | |
| TCTTTCTTCTTACAGTTCCA+TGG | - | tig0019777:121567-121586 | Msa1376020:intron | 35.0% | |
| GGAAAAAGATGAAGAAACCA+TGG | + | tig0019777:121587-121606 | None:intergenic | 35.0% | |
| TGTAGAAACCATGGTAAGAA+AGG | + | tig0019777:121608-121627 | None:intergenic | 35.0% | |
| ! | CTTCTATCTTGCAGGATTTT+GGG | - | tig0019777:121887-121906 | Msa1376020:intron | 35.0% |
| TTCCTTTGTGACATTGAACA+AGG | - | tig0019777:121977-121996 | Msa1376020:intron | 35.0% | |
| AACCTTGTTCAATGTCACAA+AGG | + | tig0019777:121982-122001 | None:intergenic | 35.0% | |
| TTTGTGACATTGAACAAGGT+TGG | - | tig0019777:121981-122000 | Msa1376020:intron | 35.0% | |
| ! | TCTTTCCAAAAGCATACTTG+CGG | + | tig0019777:122034-122053 | None:intergenic | 35.0% |
| TTTGGAAAGATGCTTGTGAT+CGG | - | tig0019777:122044-122063 | Msa1376020:CDS | 35.0% | |
| CATATCAGATGAAGCTCAAA+AGG | - | tig0019777:122181-122200 | Msa1376020:CDS | 35.0% | |
| !! | AGATTTTGAACCTTTTGAGG+GGG | - | tig0019777:122226-122245 | Msa1376020:CDS | 35.0% |
| !! | CCTTGCAAATTTCACTTTTG+TGG | + | tig0019777:122294-122313 | None:intergenic | 35.0% |
| CCACAAAAGTGAAATTTGCA+AGG | - | tig0019777:122291-122310 | Msa1376020:intron | 35.0% | |
| TCTTTCCTATCTCAGTTTCA+TGG | - | tig0019777:122349-122368 | Msa1376020:intron | 35.0% | |
| TTCTTCCATGAAACTGAGAT+AGG | + | tig0019777:122357-122376 | None:intergenic | 35.0% | |
| AAAAGCGGCAATAAGACAAA+TGG | - | tig0019777:122532-122551 | Msa1376020:five_prime_UTR | 35.0% | |
| AATTGGGGGTCAATTGAAGT+TGG | + | tig0019777:119574-119593 | None:intergenic | 40.0% | |
| !! | ATTGACCCCCAATTTTGAGA+TGG | - | tig0019777:119580-119599 | Msa1376020:three_prime_UTR | 40.0% |
| !!! | TTGACCCCCAATTTTGAGAT+GGG | - | tig0019777:119581-119600 | Msa1376020:three_prime_UTR | 40.0% |
| AGACACCCATCTCAAAATTG+GGG | + | tig0019777:119589-119608 | None:intergenic | 40.0% | |
| GAGACACCCATCTCAAAATT+GGG | + | tig0019777:119590-119609 | None:intergenic | 40.0% | |
| AGAGACACCCATCTCAAAAT+TGG | + | tig0019777:119591-119610 | None:intergenic | 40.0% | |
| GGATTCATGTCGAGAAATTG+AGG | + | tig0019777:119623-119642 | None:intergenic | 40.0% | |
| TTTCTCGACATGAATCCTCT+TGG | - | tig0019777:119626-119645 | Msa1376020:three_prime_UTR | 40.0% | |
| ATAGCATTGCTCTCAAAGAC+AGG | + | tig0019777:119683-119702 | None:intergenic | 40.0% | |
| CTCAACAACAACACCTTGTA+TGG | - | tig0019777:119722-119741 | Msa1376020:three_prime_UTR | 40.0% | |
| TTCAGGCTCACATTGAACAA+TGG | - | tig0019777:119857-119876 | Msa1376020:intron | 40.0% | |
| ! | AAGTGGCTCTATCCAAGATT+GGG | - | tig0019777:119919-119938 | Msa1376020:intron | 40.0% |
| CTCTATCCAAGATTGGGATA+TGG | - | tig0019777:119925-119944 | Msa1376020:intron | 40.0% | |
| CTATCCAAGATTGGGATATG+GGG | - | tig0019777:119927-119946 | Msa1376020:intron | 40.0% | |
| TAAACCCCATATCCCAATCT+TGG | + | tig0019777:119934-119953 | None:intergenic | 40.0% | |
| ! | AATAAGTTTGGGATACGGTG+TGG | + | tig0019777:120051-120070 | None:intergenic | 40.0% |
| AAGCTAGCTATGTTTCCACA+AGG | - | tig0019777:120118-120137 | Msa1376020:intron | 40.0% | |
| AGCTAGCTATGTTTCCACAA+GGG | - | tig0019777:120119-120138 | Msa1376020:intron | 40.0% | |
| ATTTAAATTTGGCCCCCTTG+TGG | + | tig0019777:120136-120155 | None:intergenic | 40.0% | |
| ! | CGAAGCTATTTGTTGCCAAA+GGG | + | tig0019777:120398-120417 | None:intergenic | 40.0% |
| CTTGGGTGAAGTATATGTGT+CGG | + | tig0019777:120460-120479 | None:intergenic | 40.0% | |
| CACATATACTTCACCCAAGT+TGG | - | tig0019777:120461-120480 | Msa1376020:intron | 40.0% | |
| AAACCTATGAAGCACGGATA+CGG | + | tig0019777:120626-120645 | None:intergenic | 40.0% | |
| GCTGAAGAGATTGCAATTAC+TGG | - | tig0019777:120731-120750 | Msa1376020:CDS | 40.0% | |
| AAGCATTCAAAGCTCTCTTC+AGG | + | tig0019777:120757-120776 | None:intergenic | 40.0% | |
| !! | CAAAAGTATCTCTCGACATG+AGG | + | tig0019777:120908-120927 | None:intergenic | 40.0% |
| ! | CTCATGTCGAGAGATACTTT+TGG | - | tig0019777:120906-120925 | Msa1376020:CDS | 40.0% |
| CCTAATATCTTGCGGAAGTT+TGG | + | tig0019777:120947-120966 | None:intergenic | 40.0% | |
| CCAAACTTCCGCAAGATATT+AGG | - | tig0019777:120944-120963 | Msa1376020:CDS | 40.0% | |
| ! | TGACTTGGCCTAATATCTTG+CGG | + | tig0019777:120955-120974 | None:intergenic | 40.0% |
| TTAGAATCTTTAGGCTGGGA+AGG | + | tig0019777:121019-121038 | None:intergenic | 40.0% | |
| TTCCCAGCCTAAAGATTCTA+AGG | - | tig0019777:121018-121037 | Msa1376020:intron | 40.0% | |
| !! | ACCTTGGCCTTAGAATCTTT+AGG | + | tig0019777:121028-121047 | None:intergenic | 40.0% |
| CTCTTCTTCTGCTTCTTCTT+TGG | + | tig0019777:121095-121114 | None:intergenic | 40.0% | |
| CAAAGAAGAAGCAGAAGAAG+AGG | - | tig0019777:121093-121112 | Msa1376020:intron | 40.0% | |
| AGAAGATCAAGGGGATTCTT+GGG | + | tig0019777:121133-121152 | None:intergenic | 40.0% | |
| AAGAAGATCAAGGGGATTCT+TGG | + | tig0019777:121134-121153 | None:intergenic | 40.0% | |
| TCATCCAGTATCATCTTGCT+TGG | + | tig0019777:121160-121179 | None:intergenic | 40.0% | |
| TTCAGAGAGGTTGCTATCAA+AGG | - | tig0019777:121214-121233 | Msa1376020:intron | 40.0% | |
| ATCTGGACTCAATATTGGTG+AGG | - | tig0019777:121300-121319 | Msa1376020:intron | 40.0% | |
| ! | CGTTTGTAGCGAGTGAATTT+TGG | - | tig0019777:121390-121409 | Msa1376020:intron | 40.0% |
| !! | GTGTTTGTTGTTATGGGCTT+GGG | + | tig0019777:121478-121497 | None:intergenic | 40.0% |
| !! | TGTGTTTGTTGTTATGGGCT+TGG | + | tig0019777:121479-121498 | None:intergenic | 40.0% |
| GTACTCTGCTTGTGATTGAT+GGG | - | tig0019777:121653-121672 | Msa1376020:intron | 40.0% | |
| TGAAAAAAATCAGCTTGGGC+TGG | - | tig0019777:121730-121749 | Msa1376020:intron | 40.0% | |
| CATTGTGAAATTTGCGGTTC+TGG | - | tig0019777:121801-121820 | Msa1376020:intron | 40.0% | |
| CCAAAATCCTGCAAGATAGA+AGG | + | tig0019777:121889-121908 | None:intergenic | 40.0% | |
| ! | CCTTCTATCTTGCAGGATTT+TGG | - | tig0019777:121886-121905 | Msa1376020:CDS | 40.0% |
| ! | CTTTCCAAAAGCATACTTGC+GGG | + | tig0019777:122033-122052 | None:intergenic | 40.0% |
| !!! | TGAGCCACCTTTTAAGGTAA+AGG | - | tig0019777:122070-122089 | Msa1376020:CDS | 40.0% |
| !!! | GAGCCACCTTTTAAGGTAAA+GGG | - | tig0019777:122071-122090 | Msa1376020:CDS | 40.0% |
| !!! | AGCCACCTTTTAAGGTAAAG+GGG | - | tig0019777:122072-122091 | Msa1376020:CDS | 40.0% |
| AACCCCTTTACCTTAAAAGG+TGG | + | tig0019777:122077-122096 | None:intergenic | 40.0% | |
| CACAACCCCTTTACCTTAAA+AGG | + | tig0019777:122080-122099 | None:intergenic | 40.0% | |
| !!! | CTTTTAAGGTAAAGGGGTTG+TGG | - | tig0019777:122078-122097 | Msa1376020:CDS | 40.0% |
| ATTTAGGGATTTCTTGCCCA+CGG | + | tig0019777:122109-122128 | None:intergenic | 40.0% | |
| GATGGATGAATGCTATGACA+TGG | - | tig0019777:122133-122152 | Msa1376020:intron | 40.0% | |
| ATGACATGGAGCTGTATGAA+TGG | - | tig0019777:122147-122166 | Msa1376020:intron | 40.0% | |
| GTAAATCGCATAGCAGTGAG+AGG | - | tig0019777:119215-119234 | Msa1376020:three_prime_UTR | 45.0% | |
| ! | ACAGAGGCAGTTAGTTTGAG+CGG | + | tig0019777:119264-119283 | None:intergenic | 45.0% |
| AGTCCAGATCGACCCTAATA+TGG | - | tig0019777:119389-119408 | Msa1376020:three_prime_UTR | 45.0% | |
| AAGCCATATTAGGGTCGATC+TGG | + | tig0019777:119395-119414 | None:intergenic | 45.0% | |
| GATCGACCCTAATATGGCTT+TGG | - | tig0019777:119395-119414 | Msa1376020:three_prime_UTR | 45.0% | |
| GACACCCATCTCAAAATTGG+GGG | + | tig0019777:119588-119607 | None:intergenic | 45.0% | |
| TCTCAAAGACAGGACCATCA+GGG | + | tig0019777:119673-119692 | None:intergenic | 45.0% | |
| ! | CAAGTGGCTCTATCCAAGAT+TGG | - | tig0019777:119918-119937 | Msa1376020:intron | 45.0% |
| AGAGAAGACTTACTGGAGGA+AGG | + | tig0019777:119957-119976 | None:intergenic | 45.0% | |
| CAGATGTGTATGTCAGACAG+CGG | - | tig0019777:120093-120112 | Msa1376020:intron | 45.0% | |
| GCTAGCTATGTTTCCACAAG+GGG | - | tig0019777:120120-120139 | Msa1376020:intron | 45.0% | |
| CTAGCTATGTTTCCACAAGG+GGG | - | tig0019777:120121-120140 | Msa1376020:intron | 45.0% | |
| TTGTTGCCAAAGGGTAGCTT+TGG | + | tig0019777:120389-120408 | None:intergenic | 45.0% | |
| ! | GCGAAGCTATTTGTTGCCAA+AGG | + | tig0019777:120399-120418 | None:intergenic | 45.0% |
| TGTCAATGTGTCAGTGTCTG+TGG | - | tig0019777:120592-120611 | Msa1376020:CDS | 45.0% | |
| !! | CTAGGTAAGTATTGGAGGCA+AGG | + | tig0019777:120790-120809 | None:intergenic | 45.0% |
| GCCTCCAATACTTACCTAGT+TGG | - | tig0019777:120791-120810 | Msa1376020:intron | 45.0% | |
| !! | GCCAACTAGGTAAGTATTGG+AGG | + | tig0019777:120795-120814 | None:intergenic | 45.0% |
| GTGGCCAACTAGGTAAGTAT+TGG | + | tig0019777:120798-120817 | None:intergenic | 45.0% | |
| TGTCGTTATGATGTCAGCCA+GGG | + | tig0019777:120828-120847 | None:intergenic | 45.0% | |
| ATGTCGTTATGATGTCAGCC+AGG | + | tig0019777:120829-120848 | None:intergenic | 45.0% | |
| ! | CGAGAGATACTTTTGGACCT+TGG | - | tig0019777:120913-120932 | Msa1376020:CDS | 45.0% |
| GAAGTTTGGCTGATTGACCA+AGG | + | tig0019777:120933-120952 | None:intergenic | 45.0% | |
| GATATTAGGCCAAGTCAAGC+AGG | - | tig0019777:120958-120977 | Msa1376020:CDS | 45.0% | |
| GGCTTCTTTGCAGATTGAAG+AGG | + | tig0019777:120998-121017 | None:intergenic | 45.0% | |
| GGCCTTAGAATCTTTAGGCT+GGG | + | tig0019777:121023-121042 | None:intergenic | 45.0% | |
| ! | TGGCCTTAGAATCTTTAGGC+TGG | + | tig0019777:121024-121043 | None:intergenic | 45.0% |
| !! | GCCTAAAGATTCTAAGGCCA+AGG | - | tig0019777:121024-121043 | Msa1376020:intron | 45.0% |
| ! | TTTGGGTTCGTCGTTTACCT+TGG | + | tig0019777:121044-121063 | None:intergenic | 45.0% |
| GGTAAACGACGAACCCAAAA+AGG | - | tig0019777:121045-121064 | Msa1376020:intron | 45.0% | |
| AAACGACGAACCCAAAAAGG+AGG | - | tig0019777:121048-121067 | Msa1376020:intron | 45.0% | |
| ! | ACCTTCTTGGCCTCCTTTTT+GGG | + | tig0019777:121061-121080 | None:intergenic | 45.0% |
| ! | GCTTCTTCTTTGGGCTTTTC+TGG | + | tig0019777:121085-121104 | None:intergenic | 45.0% |
| TCAAGGGGATTCTTGGGTTT+GGG | + | tig0019777:121127-121146 | None:intergenic | 45.0% | |
| ATCAAGGGGATTCTTGGGTT+TGG | + | tig0019777:121128-121147 | None:intergenic | 45.0% | |
| CTTGGAGGAAGAAGATCAAG+GGG | + | tig0019777:121142-121161 | None:intergenic | 45.0% | |
| GCTTGGAGGAAGAAGATCAA+GGG | + | tig0019777:121143-121162 | None:intergenic | 45.0% | |
| TGCTTGGAGGAAGAAGATCA+AGG | + | tig0019777:121144-121163 | None:intergenic | 45.0% | |
| TCCTCCAAGCAAGATGATAC+TGG | - | tig0019777:121153-121172 | Msa1376020:intron | 45.0% | |
| TCCAGTATCATCTTGCTTGG+AGG | + | tig0019777:121157-121176 | None:intergenic | 45.0% | |
| GCAAGATGATACTGGATGAC+TGG | - | tig0019777:121161-121180 | Msa1376020:intron | 45.0% | |
| !!! | GGTGAGGCACAATTTTTTCG+CGG | - | tig0019777:121316-121335 | Msa1376020:intron | 45.0% |
| GGTACTCTGCTTGTGATTGA+TGG | - | tig0019777:121652-121671 | Msa1376020:intron | 45.0% | |
| TCACAATGTACAATCAGGGG+CGG | + | tig0019777:121789-121808 | None:intergenic | 45.0% | |
| TGGGACATGTATGATCCTGA+AGG | - | tig0019777:121906-121925 | Msa1376020:intron | 45.0% | |
| GGGACATGTATGATCCTGAA+GGG | - | tig0019777:121907-121926 | Msa1376020:intron | 45.0% | |
| GTGACATTGAACAAGGTTGG+TGG | - | tig0019777:121984-122003 | Msa1376020:intron | 45.0% | |
| !! | AGGTTGGTGGATTTCTTCAG+CGG | - | tig0019777:121997-122016 | Msa1376020:intron | 45.0% |
| ! | TTAGCCCGCAAGTATGCTTT+TGG | - | tig0019777:122026-122045 | Msa1376020:CDS | 45.0% |
| GGAGCTGTATGAATGGACAA+AGG | - | tig0019777:122154-122173 | Msa1376020:intron | 45.0% | |
| !!! | ATTAATTTTAAAATAAGTTT+GGG | + | tig0019777:120062-120081 | None:intergenic | 5.0% |
| !!! | AATTAATTTTAAAATAAGTT+TGG | + | tig0019777:120063-120082 | None:intergenic | 5.0% |
| !!! | AAACTTATTTTAAAATTAAT+TGG | - | tig0019777:120062-120081 | Msa1376020:intron | 5.0% |
| !! | TTATTTCATTTATTTAAATT+TGG | + | tig0019777:120147-120166 | None:intergenic | 5.0% |
| CGACATGAATCCTCTTGGCA+AGG | - | tig0019777:119631-119650 | Msa1376020:three_prime_UTR | 50.0% | |
| AAGACAGGAACCTTGCCAAG+AGG | + | tig0019777:119644-119663 | None:intergenic | 50.0% | |
| TCTTGGCAAGGTTCCTGTCT+TGG | - | tig0019777:119643-119662 | Msa1376020:three_prime_UTR | 50.0% | |
| CTCAAAGACAGGACCATCAG+GGG | + | tig0019777:119672-119691 | None:intergenic | 50.0% | |
| CTCTCAAAGACAGGACCATC+AGG | + | tig0019777:119674-119693 | None:intergenic | 50.0% | |
| GTTGGGGAGAGAAGACTTAC+TGG | + | tig0019777:119964-119983 | None:intergenic | 50.0% | |
| GATACGGTGTGGCATGGATT+GGG | + | tig0019777:120040-120059 | None:intergenic | 50.0% | |
| ACGGACACTGACACATTCCT+CGG | - | tig0019777:120500-120519 | Msa1376020:intron | 50.0% | |
| !! | GTGTCAGATTTGGTGTGTCC+CGG | + | tig0019777:120527-120546 | None:intergenic | 50.0% |
| TGTCCGTATCCGTGCTTCAT+AGG | - | tig0019777:120620-120639 | Msa1376020:CDS | 50.0% | |
| CTCGACATGAGGAAACTCTG+AGG | + | tig0019777:120897-120916 | None:intergenic | 50.0% | |
| ACCCAAAAAGGAGGCCAAGA+AGG | - | tig0019777:121057-121076 | Msa1376020:intron | 50.0% | |
| ! | CACCTTCTTGGCCTCCTTTT+TGG | + | tig0019777:121062-121081 | None:intergenic | 50.0% |
| GGATTCTTGGGTTTGGGCTT+GGG | + | tig0019777:121121-121140 | None:intergenic | 50.0% | |
| TTTGTGATTGTACGCAGGGG+CGG | - | tig0019777:121277-121296 | Msa1376020:intron | 50.0% | |
| GGCGGATCTGGACTCAATAT+TGG | - | tig0019777:121295-121314 | Msa1376020:intron | 50.0% | |
| !! | AAAATCAGCTTGGGCTGGTG+TGG | - | tig0019777:121735-121754 | Msa1376020:intron | 50.0% |
| !! | ATCCTGAAGGGTACTCTCTC+TGG | - | tig0019777:121919-121938 | Msa1376020:intron | 50.0% |
| !! | AACCAGAGAGAGTACCCTTC+AGG | + | tig0019777:121924-121943 | None:intergenic | 50.0% |
| !! | TGGTGGATTTCTTCAGCGGA+TGG | - | tig0019777:122001-122020 | Msa1376020:intron | 50.0% |
| !!! | CGGTTCTGAGCCACCTTTTA+AGG | - | tig0019777:122064-122083 | Msa1376020:CDS | 50.0% |
| AACAGAGGTTCCCCCTCAAA+AGG | + | tig0019777:122239-122258 | None:intergenic | 50.0% | |
| !! | TTTTGAGGGGGAACCTCTGT+TGG | - | tig0019777:122238-122257 | Msa1376020:CDS | 50.0% |
| AAGCACTTGGCATCCAACAG+AGG | + | tig0019777:122254-122273 | None:intergenic | 50.0% | |
| CCTTCGAACCCATCAAACGA+GGG | + | tig0019777:122498-122517 | None:intergenic | 50.0% | |
| ACCTTCGAACCCATCAAACG+AGG | + | tig0019777:122499-122518 | None:intergenic | 50.0% | |
| TTGAGCGGCGGGGTGATTTA+GGG | + | tig0019777:119249-119268 | None:intergenic | 55.0% | |
| TTTGAGCGGCGGGGTGATTT+AGG | + | tig0019777:119250-119269 | None:intergenic | 55.0% | |
| ! | AGGCAGTTAGTTTGAGCGGC+GGG | + | tig0019777:119260-119279 | None:intergenic | 55.0% |
| ! | GAGGCAGTTAGTTTGAGCGG+CGG | + | tig0019777:119261-119280 | None:intergenic | 55.0% |
| TATTCGCAGCAGCAGCAAGC+AGG | - | tig0019777:119363-119382 | Msa1376020:three_prime_UTR | 55.0% | |
| CCATCAGGGGTTTCCAAGAC+AGG | + | tig0019777:119659-119678 | None:intergenic | 55.0% | |
| CCTGTCTTGGAAACCCCTGA+TGG | - | tig0019777:119656-119675 | Msa1376020:three_prime_UTR | 55.0% | |
| GGGGAGAGAAGACTTACTGG+AGG | + | tig0019777:119961-119980 | None:intergenic | 55.0% | |
| GGATACGGTGTGGCATGGAT+TGG | + | tig0019777:120041-120060 | None:intergenic | 55.0% | |
| ! | GTTTGGGATACGGTGTGGCA+TGG | + | tig0019777:120046-120065 | None:intergenic | 55.0% |
| GGGTAGCCAAAGCTACCCTT+TGG | - | tig0019777:120380-120399 | Msa1376020:intron | 55.0% | |
| CACTGACACATTCCTCGGAC+CGG | - | tig0019777:120505-120524 | Msa1376020:intron | 55.0% | |
| ACTGACACATTCCTCGGACC+GGG | - | tig0019777:120506-120525 | Msa1376020:intron | 55.0% | |
| CAGCTTCAGCCTGCTTGACT+TGG | + | tig0019777:120970-120989 | None:intergenic | 55.0% | |
| !! | GGGCTTTTCTGGCACCTTCT+TGG | + | tig0019777:121074-121093 | None:intergenic | 55.0% |
| GGGATTCTTGGGTTTGGGCT+TGG | + | tig0019777:121122-121141 | None:intergenic | 55.0% | |
| ! | AAGGGGTTGTGGCTTTTCCG+TGG | - | tig0019777:122089-122108 | Msa1376020:CDS | 55.0% |
| ! | AGGGGTTGTGGCTTTTCCGT+GGG | - | tig0019777:122090-122109 | Msa1376020:CDS | 55.0% |
| AACCCATCAAACGAGGGAGC+GGG | + | tig0019777:122492-122511 | None:intergenic | 55.0% | |
| GAACCCATCAAACGAGGGAG+CGG | + | tig0019777:122493-122512 | None:intergenic | 55.0% | |
| !! | CCCTCGTTTGATGGGTTCGA+AGG | - | tig0019777:122495-122514 | Msa1376020:five_prime_UTR | 55.0% |
| ! | GGCAGTTAGTTTGAGCGGCG+GGG | + | tig0019777:119259-119278 | None:intergenic | 60.0% |
| !! | ACGGTGTGGCATGGATTGGG+TGG | + | tig0019777:120037-120056 | None:intergenic | 60.0% |
| !! | ATTTGGTGTGTCCCGGTCCG+AGG | + | tig0019777:120520-120539 | None:intergenic | 60.0% |
| GGGTGACAGAGTGGCCAACT+AGG | + | tig0019777:120808-120827 | None:intergenic | 60.0% | |
| AGTTGGCCACTCTGTCACCC+TGG | - | tig0019777:120808-120827 | Msa1376020:CDS | 60.0% | |
| TGTCAGCCAGGGTGACAGAG+TGG | + | tig0019777:120817-120836 | None:intergenic | 60.0% | |
| ATTGTACGCAGGGGCGGATC+TGG | - | tig0019777:121283-121302 | Msa1376020:intron | 60.0% | |
| TGCCACACCAGGACCTGTTC+AGG | - | tig0019777:121762-121781 | Msa1376020:intron | 60.0% | |
| GACCTGAACAGGTCCTGGTG+TGG | + | tig0019777:121767-121786 | None:intergenic | 60.0% | |
| AATCAGGGGCGGACCTGAAC+AGG | + | tig0019777:121778-121797 | None:intergenic | 60.0% | |
| TCTCCCGCTCCCTCGTTTGA+TGG | - | tig0019777:122486-122505 | Msa1376020:five_prime_UTR | 60.0% | |
| CTCCCGCTCCCTCGTTTGAT+GGG | - | tig0019777:122487-122506 | Msa1376020:five_prime_UTR | 60.0% | |
| GGTGTGGCACTTGCCACACC+AGG | - | tig0019777:121751-121770 | Msa1376020:intron | 65.0% | |
| GGGCGGACCTGAACAGGTCC+TGG | + | tig0019777:121772-121791 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019777 | gene | 119194 | 122573 | 119194 | ID=Msa1376020;Name=Msa1376020 |
| tig0019777 | mRNA | 119194 | 122573 | 119194 | ID=Msa1376020-mRNA-1;Parent=Msa1376020;Name=Msa1376020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=127|0.42|0.5|1|0.28|0.37|8|586|287 |
| tig0019777 | exon | 119194 | 119866 | 119194 | ID=Msa1376020-mRNA-1:exon:4884;Parent=Msa1376020-mRNA-1 |
| tig0019777 | exon | 120545 | 120787 | 120545 | ID=Msa1376020-mRNA-1:exon:4883;Parent=Msa1376020-mRNA-1 |
| tig0019777 | exon | 120797 | 121006 | 120797 | ID=Msa1376020-mRNA-1:exon:4882;Parent=Msa1376020-mRNA-1 |
| tig0019777 | exon | 121804 | 121905 | 121804 | ID=Msa1376020-mRNA-1:exon:4881;Parent=Msa1376020-mRNA-1 |
| tig0019777 | exon | 122004 | 122114 | 122004 | ID=Msa1376020-mRNA-1:exon:4880;Parent=Msa1376020-mRNA-1 |
| tig0019777 | exon | 122163 | 122264 | 122163 | ID=Msa1376020-mRNA-1:exon:4879;Parent=Msa1376020-mRNA-1 |
| tig0019777 | exon | 122351 | 122398 | 122351 | ID=Msa1376020-mRNA-1:exon:4878;Parent=Msa1376020-mRNA-1 |
| tig0019777 | exon | 122486 | 122573 | 122486 | ID=Msa1376020-mRNA-1:exon:4877;Parent=Msa1376020-mRNA-1 |
| tig0019777 | five_prime_UTR | 122486 | 122573 | 122486 | ID=Msa1376020-mRNA-1:five_prime_utr;Parent=Msa1376020-mRNA-1 |
| tig0019777 | five_prime_UTR | 122360 | 122398 | 122360 | ID=Msa1376020-mRNA-1:five_prime_utr;Parent=Msa1376020-mRNA-1 |
| tig0019777 | CDS | 122351 | 122359 | 122351 | ID=Msa1376020-mRNA-1:cds;Parent=Msa1376020-mRNA-1 |
| tig0019777 | CDS | 122163 | 122264 | 122163 | ID=Msa1376020-mRNA-1:cds;Parent=Msa1376020-mRNA-1 |
| tig0019777 | CDS | 122004 | 122114 | 122004 | ID=Msa1376020-mRNA-1:cds;Parent=Msa1376020-mRNA-1 |
| tig0019777 | CDS | 121804 | 121905 | 121804 | ID=Msa1376020-mRNA-1:cds;Parent=Msa1376020-mRNA-1 |
| tig0019777 | CDS | 120797 | 121006 | 120797 | ID=Msa1376020-mRNA-1:cds;Parent=Msa1376020-mRNA-1 |
| tig0019777 | CDS | 120545 | 120787 | 120545 | ID=Msa1376020-mRNA-1:cds;Parent=Msa1376020-mRNA-1 |
| tig0019777 | CDS | 119780 | 119866 | 119780 | ID=Msa1376020-mRNA-1:cds;Parent=Msa1376020-mRNA-1 |
| tig0019777 | three_prime_UTR | 119194 | 119779 | 119194 | ID=Msa1376020-mRNA-1:three_prime_utr;Parent=Msa1376020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
