Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436670 | XP_013458730.1 | 79.781 | 366 | 14 | 6 | 1 | 306 | 1 | 366 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436670 | sp|Q6YW46|EF1G2_ORYSJ | 65.266 | 357 | 65 | 7 | 1 | 298 | 1 | 357 | 8.74e-154 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436670 | A0A072USZ0 | 79.781 | 366 | 14 | 6 | 1 | 306 | 1 | 366 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1376020 | Msa1436670 | 0.804075 | 2.570691e-49 | -8.615850e-47 |
| Msa1418830 | Msa1436670 | 0.888445 | 5.868088e-73 | -8.615850e-47 |
| Msa1225150 | Msa1436670 | 0.874091 | 8.854545e-68 | -8.615850e-47 |
| Msa0437880 | Msa1436670 | 0.802032 | 6.799490e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436670 | MtrunA17_Chr0c12g0493651 | 79.781 | 366 | 14 | 6 | 1 | 306 | 1 | 366 | 0.0 | 553 |
| Msa1436670 | MtrunA17_Chr3g0102331 | 65.301 | 366 | 67 | 6 | 1 | 306 | 1 | 366 | 1.55e-160 | 454 |
| Msa1436670 | MtrunA17_Chr2g0276951 | 68.320 | 363 | 57 | 6 | 2 | 306 | 3 | 365 | 7.79e-157 | 444 |
| Msa1436670 | MtrunA17_Chr4g0077001 | 58.804 | 301 | 42 | 8 | 1 | 274 | 1 | 246 | 6.07e-99 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436670 | AT1G09640.1 | 62.040 | 353 | 79 | 6 | 1 | 298 | 1 | 353 | 1.40e-143 | 411 |
| Msa1436670 | AT1G57720.1 | 61.473 | 353 | 80 | 7 | 1 | 298 | 1 | 352 | 2.68e-140 | 402 |
| Msa1436670 | AT1G57720.2 | 61.473 | 353 | 80 | 7 | 1 | 298 | 1 | 352 | 2.68e-140 | 402 |
| Msa1436670 | AT1G09640.2 | 58.824 | 204 | 52 | 3 | 1 | 172 | 1 | 204 | 2.88e-75 | 232 |
Find 88 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTATCTTGCAGGATTT+TGG | 0.085089 | tig0028018:-20473 | Msa1436670:intron |
| CTCTTCTTCTGCTTCTTCTT+TGG | 0.092984 | tig0028018:+21264 | None:intergenic |
| CATTCATCCATCACAAATTT+AGG | 0.098053 | tig0028018:+20238 | None:intergenic |
| CCACACCCCTTTACCTTAAA+AGG | 0.208626 | tig0028018:+20282 | None:intergenic |
| TTTGAGCGGCGGAGTGATTT+AGG | 0.215862 | tig0028018:+24218 | None:intergenic |
| GGGATTCTTGGGTTTGGGCT+TGG | 0.216459 | tig0028018:+21237 | None:intergenic |
| TCACTTACCAAAGCCATATT+AGG | 0.216629 | tig0028018:+24025 | None:intergenic |
| TCTTCTTCTGCTTCTTCTTT+GGG | 0.226224 | tig0028018:+21265 | None:intergenic |
| GGATTCTTGGGTTTGGGCTT+GGG | 0.239221 | tig0028018:+21238 | None:intergenic |
| ATCAATTAGATTCTTCATTC+TGG | 0.242038 | tig0028018:-23933 | Msa1436670:intron |
| AGAGACACCCATCTCAAAAT+TGG | 0.270995 | tig0028018:+23839 | None:intergenic |
| CCAAACTTCCGCAAGATATT+AGG | 0.289841 | tig0028018:-21412 | Msa1436670:CDS |
| TTAGCCCGCAAGTATGCTTT+TGG | 0.302747 | tig0028018:-20333 | Msa1436670:CDS |
| ATTCATCCATCACAAATTTA+GGG | 0.306943 | tig0028018:+20239 | None:intergenic |
| CCTAATATCTTGCGGAAGTT+TGG | 0.312009 | tig0028018:+21412 | None:intergenic |
| AAGAAGATCAAGGGGATTCT+TGG | 0.325325 | tig0028018:+21225 | None:intergenic |
| ATCAAGGGGATTCTTGGGTT+TGG | 0.332225 | tig0028018:+21231 | None:intergenic |
| CTCTATCCAAGATTGGGATA+TGG | 0.336268 | tig0028018:-23501 | Msa1436670:CDS |
| GGTAAACGACGAACCCAAAA+AGG | 0.338365 | tig0028018:-21311 | Msa1436670:CDS |
| TCAAGGGGATTCTTGGGTTT+GGG | 0.341781 | tig0028018:+21232 | None:intergenic |
| TTGAGCGGCGGAGTGATTTA+GGG | 0.357016 | tig0028018:+24219 | None:intergenic |
| ATCCTGAAGGGTACTCTCTC+TGG | 0.365424 | tig0028018:-20440 | Msa1436670:intron |
| CTCTCAAAGACAGGACCATC+AGG | 0.372688 | tig0028018:+23756 | None:intergenic |
| TCTATCCAAGATTGGGATAT+GGG | 0.385860 | tig0028018:-23500 | Msa1436670:CDS |
| CTTTCCAAAAGCATACTTGC+GGG | 0.392465 | tig0028018:+20329 | None:intergenic |
| TCCTCCAAGCAAGATGATAC+TGG | 0.393435 | tig0028018:-21203 | Msa1436670:CDS |
| TCTTGGCAAGGTTCCTGTCT+TGG | 0.398617 | tig0028018:-23784 | Msa1436670:intron |
| GAGACACCCATCTCAAAATT+GGG | 0.399343 | tig0028018:+23840 | None:intergenic |
| AGTCCAGATCGACCCTAATA+TGG | 0.401910 | tig0028018:-24038 | Msa1436670:exon |
| CTCAACAACAACACCTTGTA+TGG | 0.403217 | tig0028018:-23705 | Msa1436670:CDS |
| CTCATGTCGAGAGATACTTT+TGG | 0.403977 | tig0028018:-21450 | Msa1436670:CDS |
| CAGCTTCAGCCTGCTTGACT+TGG | 0.404975 | tig0028018:+21389 | None:intergenic |
| AGAAGATCAAGGGGATTCTT+GGG | 0.421200 | tig0028018:+21226 | None:intergenic |
| CAAGTGGCTCTATCCAAGAT+TGG | 0.421551 | tig0028018:-23508 | Msa1436670:CDS |
| GTAACCCCATATCCCAATCT+TGG | 0.433172 | tig0028018:+23495 | None:intergenic |
| CACTTACCAAAGCCATATTA+GGG | 0.456447 | tig0028018:+24026 | None:intergenic |
| GATCGACCCTAATATGGCTT+TGG | 0.467819 | tig0028018:-24032 | Msa1436670:intron |
| AAGCCATATTAGGGTCGATC+TGG | 0.471652 | tig0028018:+24035 | None:intergenic |
| CAAAGAAGAAGCAGAAGAAG+AGG | 0.479600 | tig0028018:-21263 | Msa1436670:CDS |
| GCCTCCAATACTTACCTAGT+TGG | 0.484176 | tig0028018:-21565 | Msa1436670:CDS |
| AAGTGGCTCTATCCAAGATT+GGG | 0.485075 | tig0028018:-23507 | Msa1436670:CDS |
| CCATCAGGGGTTTCCAAGAC+AGG | 0.490090 | tig0028018:+23771 | None:intergenic |
| ACGACATGCAATTTGTATGT+TGG | 0.496799 | tig0028018:-21514 | Msa1436670:CDS |
| TGGTGGATTTCTTCAGCGGA+TGG | 0.498176 | tig0028018:-20358 | Msa1436670:CDS |
| GCAAGATGATACTGGATGAC+TGG | 0.502140 | tig0028018:-21195 | Msa1436670:CDS |
| TCCAGTATCATCTTGCTTGG+AGG | 0.510179 | tig0028018:+21202 | None:intergenic |
| TCATCCAGTATCATCTTGCT+TGG | 0.513427 | tig0028018:+21199 | None:intergenic |
| ATAGCATTGCTCTCAAAGAC+AGG | 0.521702 | tig0028018:+23747 | None:intergenic |
| GTGGCCAACTAGGTAAGTAT+TGG | 0.528399 | tig0028018:+21561 | None:intergenic |
| GATATTAGGCCAAGTCAAGC+AGG | 0.533721 | tig0028018:-21398 | Msa1436670:CDS |
| GCCAACTAGGTAAGTATTGG+AGG | 0.535307 | tig0028018:+21564 | None:intergenic |
| CCTGTCTTGGAAACCCCTGA+TGG | 0.535349 | tig0028018:-23771 | Msa1436670:CDS |
| AGAAATCCCTAAATTTGTGA+TGG | 0.546910 | tig0028018:-20245 | None:intergenic |
| ATGTCGTTATGATGTCAGCC+AGG | 0.547555 | tig0028018:+21530 | None:intergenic |
| GGGTGACAGAGTGGCCAACT+AGG | 0.557957 | tig0028018:+21551 | None:intergenic |
| CTAGGTAAGTATTGGAGGCA+AGG | 0.570319 | tig0028018:+21569 | None:intergenic |
| TTTGGAAAGATGCTTGTGAT+CGG | 0.574318 | tig0028018:-20315 | Msa1436670:CDS |
| TGCTTGGAGGAAGAAGATCA+AGG | 0.574810 | tig0028018:+21215 | None:intergenic |
| GCTTGGAGGAAGAAGATCAA+GGG | 0.576087 | tig0028018:+21216 | None:intergenic |
| ATTTAGGGATTTCTTGCCCA+CGG | 0.579224 | tig0028018:+20254 | None:intergenic |
| GTGACATTGAACAAGGGTGG+TGG | 0.583065 | tig0028018:-20375 | Msa1436670:CDS |
| TGACTTGGCCTAATATCTTG+CGG | 0.591227 | tig0028018:+21404 | None:intergenic |
| TCTTTCCAAAAGCATACTTG+CGG | 0.593669 | tig0028018:+20328 | None:intergenic |
| ACAGAGGCAGTTAGTTTGAG+CGG | 0.595305 | tig0028018:+24204 | None:intergenic |
| TTGATTCTAATATTAACAAG+TGG | 0.595616 | tig0028018:-23524 | Msa1436670:CDS |
| GAAGTTTGGCTGATTGACCA+AGG | 0.597999 | tig0028018:+21426 | None:intergenic |
| AGTTGGCCACTCTGTCACCC+TGG | 0.598292 | tig0028018:-21548 | Msa1436670:CDS |
| TTCCTTTGTGACATTGAACA+AGG | 0.601504 | tig0028018:-20382 | Msa1436670:CDS |
| TTCAGGCTCACATTGAACAA+TGG | 0.606079 | tig0028018:-23569 | Msa1436670:intron |
| GAGGCAGTTAGTTTGAGCGG+CGG | 0.611667 | tig0028018:+24207 | None:intergenic |
| AATATTAGAATCAATCTCCA+AGG | 0.612021 | tig0028018:+23533 | None:intergenic |
| CAAAAGTATCTCTCGACATG+AGG | 0.612573 | tig0028018:+21451 | None:intergenic |
| AGACACCCATCTCAAAATTG+GGG | 0.615532 | tig0028018:+23841 | None:intergenic |
| AATCAAAGAAGAACCATACA+AGG | 0.618859 | tig0028018:+23692 | None:intergenic |
| AGGGTGGTGGATTTCTTCAG+CGG | 0.620076 | tig0028018:-20362 | Msa1436670:CDS |
| TCTCAAAGACAGGACCATCA+GGG | 0.621025 | tig0028018:+23757 | None:intergenic |
| CTATCCAAGATTGGGATATG+GGG | 0.621791 | tig0028018:-23499 | Msa1436670:intron |
| CACCCCTTTACCTTAAAAGG+TGG | 0.623270 | tig0028018:+20285 | None:intergenic |
| CTTGGAGGAAGAAGATCAAG+GGG | 0.623330 | tig0028018:+21217 | None:intergenic |
| CTCAAAGACAGGACCATCAG+GGG | 0.627628 | tig0028018:+23758 | None:intergenic |
| TCCTTTGTGACATTGAACAA+GGG | 0.641501 | tig0028018:-20381 | Msa1436670:CDS |
| TGTCAGCCAGGGTGACAGAG+TGG | 0.662886 | tig0028018:+21542 | None:intergenic |
| ACCCTTGTTCAATGTCACAA+AGG | 0.664832 | tig0028018:+20380 | None:intergenic |
| GTAAATCGCATAGCAGTGAG+AGG | 0.665176 | tig0028018:-24250 | Msa1436670:five_prime_UTR |
| TTTGTGACATTGAACAAGGG+TGG | 0.667677 | tig0028018:-20378 | Msa1436670:CDS |
| CTCGACATGAGGAAACTCTG+AGG | 0.687154 | tig0028018:+21462 | None:intergenic |
| TGTCGTTATGATGTCAGCCA+GGG | 0.694507 | tig0028018:+21531 | None:intergenic |
| GACACCCATCTCAAAATTGG+GGG | 0.700541 | tig0028018:+23842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTATTTTAAAATAAGTT+TGG | + | tig0028018:21155-21174 | None:intergenic | 10.0% |
| !!! | CAAACTTATTTTAAAATAAT+TGG | - | tig0028018:21153-21172 | Msa1436670:intron | 10.0% |
| !!! | TAAAATAAGCTTTTAAAATA+AGG | - | tig0028018:22171-22190 | Msa1436670:intron | 10.0% |
| !! | AAAAAAAAAAAAAAATCAAG+TGG | - | tig0028018:22212-22231 | Msa1436670:intron | 10.0% |
| !!! | ATATTTTGTATTATTTTGAT+AGG | + | tig0028018:22385-22404 | None:intergenic | 10.0% |
| !!! | TCTAATTGATTTGATAATTA+GGG | + | tig0028018:20576-20595 | None:intergenic | 15.0% |
| !!! | ATCTAATTGATTTGATAATT+AGG | + | tig0028018:20577-20596 | None:intergenic | 15.0% |
| !! | ATAAACAATTAAATTCCAAA+AGG | + | tig0028018:21493-21512 | None:intergenic | 15.0% |
| !! | TCTTTAAATATATAAAACTG+AGG | - | tig0028018:21574-21593 | Msa1436670:CDS | 15.0% |
| !!! | TTATAACAAGTGAATAATTT+TGG | - | tig0028018:22406-22425 | Msa1436670:intron | 15.0% |
| !! | TCAAAGAAAAAAATATTTGT+TGG | - | tig0028018:22521-22540 | Msa1436670:intron | 15.0% |
| !! | CAAAGAAAAAAATATTTGTT+GGG | - | tig0028018:22522-22541 | Msa1436670:intron | 15.0% |
| !!! | AAAGAAAAAAATATTTGTTG+GGG | - | tig0028018:22523-22542 | Msa1436670:intron | 15.0% |
| !! | AAATAACATATGCAAATATA+AGG | - | tig0028018:23614-23633 | Msa1436670:intron | 15.0% |
| !! | TTGATTCTAATATTAACAAG+TGG | - | tig0028018:20995-21014 | Msa1436670:intron | 20.0% |
| !!! | TTTAAAATAAGTTTGGGATA+CGG | + | tig0028018:21148-21167 | None:intergenic | 20.0% |
| !!! | GGTTTTAACCATTAAAATTT+CGG | + | tig0028018:21382-21401 | None:intergenic | 20.0% |
| !!! | AAGTATAACTACTTTGATTT+TGG | + | tig0028018:21524-21543 | None:intergenic | 20.0% |
| !! | TAAATCTGAGAACTAAATTA+TGG | - | tig0028018:21689-21708 | Msa1436670:intron | 20.0% |
| !!! | TTTTTGGTTAAATTACTTGA+AGG | + | tig0028018:22093-22112 | None:intergenic | 20.0% |
| !!! | AAATTACTTGAAGGATTTTT+TGG | + | tig0028018:22109-22128 | None:intergenic | 20.0% |
| !! | TTGAATTGTAAATTACTTGA+AGG | + | tig0028018:22118-22137 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATCAAGTGGTT+TGG | - | tig0028018:22217-22236 | Msa1436670:intron | 20.0% |
| !! | GTTAAGAAGTTAATAACTAA+CGG | - | tig0028018:22277-22296 | Msa1436670:intron | 20.0% |
| !! | GGTAGCTAAATATATATATT+GGG | - | tig0028018:22469-22488 | Msa1436670:intron | 20.0% |
| !! | TTGAAAACAATAACATCAAA+GGG | + | tig0028018:23419-23438 | None:intergenic | 20.0% |
| !! | ATTGAAAACAATAACATCAA+AGG | + | tig0028018:23420-23439 | None:intergenic | 20.0% |
| !! | AAAAATGAAAAAAATCAGCT+TGG | - | tig0028018:23885-23904 | Msa1436670:CDS | 20.0% |
| !! | AAAATGAAAAAAATCAGCTT+GGG | - | tig0028018:23886-23905 | Msa1436670:CDS | 20.0% |
| !!! | GATTTTTATAAGACATACAT+AGG | - | tig0028018:24007-24026 | Msa1436670:intron | 20.0% |
| !! | TTGATTTGATAATTAGGGTT+AGG | + | tig0028018:20571-20590 | None:intergenic | 25.0% |
| ! | ATCAATTAGATTCTTCATTC+TGG | - | tig0028018:20586-20605 | Msa1436670:intron | 25.0% |
| ! | AATCAACAAAAATGCTTACA+AGG | - | tig0028018:20612-20631 | Msa1436670:intron | 25.0% |
| ! | AATATTAGAATCAATCTCCA+AGG | + | tig0028018:20989-21008 | None:intergenic | 25.0% |
| ! | TAACCATTAAAATTTCGGTT+CGG | + | tig0028018:21377-21396 | None:intergenic | 25.0% |
| ! | ATTAAATTCCAAAAGGATAC+TGG | + | tig0028018:21486-21505 | None:intergenic | 25.0% |
| !!! | CTACTTTGATTTTGGATAAA+AGG | + | tig0028018:21516-21535 | None:intergenic | 25.0% |
| !!! | ATCTCTTTCTTACTTTTGTA+TGG | + | tig0028018:21995-22014 | None:intergenic | 25.0% |
| !!! | TAAAATAAGGTGTTTTCAAG+TGG | - | tig0028018:22184-22203 | Msa1436670:intron | 25.0% |
| ! | AAAATAACCGAACCATTATA+TGG | + | tig0028018:22315-22334 | None:intergenic | 25.0% |
| !!! | TATAATGGTTCGGTTATTTT+TGG | - | tig0028018:22315-22334 | Msa1436670:intron | 25.0% |
| ! | TTGTCAAAATCAGTAGAAAT+AGG | + | tig0028018:22436-22455 | None:intergenic | 25.0% |
| ! | TTTGACAAATAAACTCTTTG+CGG | - | tig0028018:22448-22467 | Msa1436670:intron | 25.0% |
| ! | CGGTAGCTAAATATATATAT+TGG | - | tig0028018:22468-22487 | Msa1436670:intron | 25.0% |
| ! | TCATAGAAATAAACCAACTT+GGG | + | tig0028018:22640-22659 | None:intergenic | 25.0% |
| ! | TTCATAGAAATAAACCAACT+TGG | + | tig0028018:22641-22660 | None:intergenic | 25.0% |
| ! | TAAAGTATATGTGTCAGATT+TGG | + | tig0028018:22700-22719 | None:intergenic | 25.0% |
| ! | TTAATTATTTGTCTGGATGA+AGG | - | tig0028018:22872-22891 | Msa1436670:intron | 25.0% |
| ! | TGAAAACAATAACATCAAAG+GGG | + | tig0028018:23418-23437 | None:intergenic | 25.0% |
| !!! | TTATGTGTGTTTGTTGTTAT+GGG | + | tig0028018:23646-23665 | None:intergenic | 25.0% |
| ! | CTATGAGTACCAAATATTTA+GGG | + | tig0028018:23669-23688 | None:intergenic | 25.0% |
| ! | ACTATGAGTACCAAATATTT+AGG | + | tig0028018:23670-23689 | None:intergenic | 25.0% |
| ! | GAAATCATATGTAGAAATCA+TGG | + | tig0028018:23777-23796 | None:intergenic | 25.0% |
| ! | TCAGTTCAATGTTTCATATA+TGG | - | tig0028018:23856-23875 | Msa1436670:CDS | 25.0% |
| ! | TTCAATGTTTCATATATGGA+GGG | - | tig0028018:23860-23879 | Msa1436670:CDS | 25.0% |
| ! | AATTTCACAATGTACAATCA+GGG | + | tig0028018:23953-23972 | None:intergenic | 25.0% |
| ! | AAATTTCACAATGTACAATC+AGG | + | tig0028018:23954-23973 | None:intergenic | 25.0% |
| ! | ATTGTACATTGTGAAATTTG+CGG | - | tig0028018:23955-23974 | Msa1436670:intron | 25.0% |
| GATGAATGAAAAGAGTAGTA+GGG | + | tig0028018:20522-20541 | None:intergenic | 30.0% | |
| AATCAAAGAAGAACCATACA+AGG | + | tig0028018:20830-20849 | None:intergenic | 30.0% | |
| !! | ATGGATTGATTTTTCATCCT+TGG | - | tig0028018:20969-20988 | Msa1436670:intron | 30.0% |
| !! | ATTAAAATTTCGGTTCGGTT+CGG | + | tig0028018:21372-21391 | None:intergenic | 30.0% |
| AGCTAAAACTGAACCAATTA+TGG | - | tig0028018:21413-21432 | Msa1436670:CDS | 30.0% | |
| AAAACGGTTAGAACCATAAT+TGG | + | tig0028018:21429-21448 | None:intergenic | 30.0% | |
| !!! | CAATATTGGTTTTGTTCGTT+CGG | + | tig0028018:21461-21480 | None:intergenic | 30.0% |
| !! | AAAGGATACTGGTTCAATAT+TGG | + | tig0028018:21475-21494 | None:intergenic | 30.0% |
| ! | ATATTGAACCAGTATCCTTT+TGG | - | tig0028018:21475-21494 | Msa1436670:CDS | 30.0% |
| ! | TATTTGCTGAAGAATGTTCA+TGG | + | tig0028018:21655-21674 | None:intergenic | 30.0% |
| GAATGAACCTATAACTAAGT+AGG | - | tig0028018:21711-21730 | Msa1436670:intron | 30.0% | |
| AACAGTTCCTACTTAGTTAT+AGG | + | tig0028018:21721-21740 | None:intergenic | 30.0% | |
| AAACACATTGTCTTACATTG+TGG | + | tig0028018:21770-21789 | None:intergenic | 30.0% | |
| TACTTCTATAACTAAGTCAC+AGG | - | tig0028018:21889-21908 | Msa1436670:intron | 30.0% | |
| !!! | TTTTTTTCGGAGTATGAGTA+AGG | + | tig0028018:21923-21942 | None:intergenic | 30.0% |
| TACTCATACTCCGAAAAAAA+AGG | - | tig0028018:21923-21942 | Msa1436670:intron | 30.0% | |
| ACTCATACTCCGAAAAAAAA+GGG | - | tig0028018:21924-21943 | Msa1436670:intron | 30.0% | |
| !! | AAAAAATCAAGTGGTTTGGT+CGG | - | tig0028018:22221-22240 | Msa1436670:intron | 30.0% |
| !! | TGGTTTATTTCTATGAAGCA+CGG | - | tig0028018:22644-22663 | Msa1436670:intron | 30.0% |
| ! | TGATTTTCTCACATTGTTAG+CGG | - | tig0028018:22732-22751 | Msa1436670:intron | 30.0% |
| GTAAATAAACCTATGAAGCA+CGG | + | tig0028018:22795-22814 | None:intergenic | 30.0% | |
| CCAGACAAATAATTAAGATC+AGG | + | tig0028018:22868-22887 | None:intergenic | 30.0% | |
| CCTGATCTTAATTATTTGTC+TGG | - | tig0028018:22865-22884 | Msa1436670:intron | 30.0% | |
| GAAAACAATAACATCAAAGG+GGG | + | tig0028018:23417-23436 | None:intergenic | 30.0% | |
| !! | GTTATGTGTGTTTGTTGTTA+TGG | + | tig0028018:23647-23666 | None:intergenic | 30.0% |
| CACACATAACCCTAAATATT+TGG | - | tig0028018:23657-23676 | Msa1436670:intron | 30.0% | |
| TGTAGAAATCATGGTAAGAA+AGG | + | tig0028018:23768-23787 | None:intergenic | 30.0% | |
| ! | GATTTCTTCTTCTTTTCTAC+TGG | - | tig0028018:23791-23810 | Msa1436670:intron | 30.0% |
| GTTCAATGTTTCATATATGG+AGG | - | tig0028018:23859-23878 | Msa1436670:CDS | 30.0% | |
| ATTTCACAATGTACAATCAG+GGG | + | tig0028018:23952-23971 | None:intergenic | 30.0% | |
| TTTAAATCCTTCTATCTTGC+AGG | - | tig0028018:24039-24058 | Msa1436670:exon | 30.0% | |
| ! | CGAAGAGATTTTACTTACAG+AGG | + | tig0028018:20334-20353 | None:intergenic | 35.0% |
| CTGTAAGTAAAATCTCTTCG+CGG | - | tig0028018:20334-20353 | Msa1436670:CDS | 35.0% | |
| CACTTACCAAAGCCATATTA+GGG | + | tig0028018:20496-20515 | None:intergenic | 35.0% | |
| TCACTTACCAAAGCCATATT+AGG | + | tig0028018:20497-20516 | None:intergenic | 35.0% | |
| GGATGAATGAAAAGAGTAGT+AGG | + | tig0028018:20523-20542 | None:intergenic | 35.0% | |
| ATTAGATCAGATCGATGAAG+TGG | + | tig0028018:20544-20563 | None:intergenic | 35.0% | |
| TTGATTCATTCTCTGCATTC+AGG | - | tig0028018:20933-20952 | Msa1436670:intron | 35.0% | |
| TCTATCCAAGATTGGGATAT+GGG | - | tig0028018:21019-21038 | Msa1436670:intron | 35.0% | |
| TCAGTGTATGGAAAATGTTG+AGG | + | tig0028018:21072-21091 | None:intergenic | 35.0% | |
| TCTAAATCGAGTTCAGTGTA+TGG | + | tig0028018:21084-21103 | None:intergenic | 35.0% | |
| ! | CTGAAGTGTCAAAATATGCA+TGG | - | tig0028018:21325-21344 | Msa1436670:intron | 35.0% |
| GTGTCAAAATATGCATGGTT+CGG | - | tig0028018:21330-21349 | Msa1436670:intron | 35.0% | |
| ! | GAACCGAACCGAAATTTTAA+TGG | - | tig0028018:21371-21390 | Msa1436670:intron | 35.0% |
| ATGGTTAAAACCGTTTCATG+TGG | - | tig0028018:21390-21409 | Msa1436670:CDS | 35.0% | |
| !!! | AGTTTTAGCTCCACATGAAA+CGG | + | tig0028018:21403-21422 | None:intergenic | 35.0% |
| CGTTCGGTTATAGGTAAAAA+CGG | + | tig0028018:21445-21464 | None:intergenic | 35.0% | |
| CTATGAATTGTTTGTGCTGA+AGG | - | tig0028018:21798-21817 | Msa1436670:intron | 35.0% | |
| !! | GTATGCATCGATTGAGTAAA+AGG | - | tig0028018:21820-21839 | Msa1436670:intron | 35.0% |
| TATAACTAAGTCACAGGTGA+AGG | - | tig0028018:21895-21914 | Msa1436670:intron | 35.0% | |
| ATAACTAAGTCACAGGTGAA+GGG | - | tig0028018:21896-21915 | Msa1436670:intron | 35.0% | |
| !!! | TCCAAGCTTCCCTTTTTTTT+CGG | + | tig0028018:21936-21955 | None:intergenic | 35.0% |
| ! | ACTTTTGTATGGAATGCTGA+TGG | + | tig0028018:21984-22003 | None:intergenic | 35.0% |
| ! | CTTCATTTTCACTTTGGATG+AGG | + | tig0028018:22021-22040 | None:intergenic | 35.0% |
| ! | CCATCTCTTCATTTTCACTT+TGG | + | tig0028018:22027-22046 | None:intergenic | 35.0% |
| CCAAAGTGAAAATGAAGAGA+TGG | - | tig0028018:22024-22043 | Msa1436670:intron | 35.0% | |
| TTCGTTCGTGAACCATATAA+TGG | - | tig0028018:22300-22319 | Msa1436670:intron | 35.0% | |
| TCGTGAACCATATAATGGTT+CGG | - | tig0028018:22305-22324 | Msa1436670:intron | 35.0% | |
| !!! | TGGTTCGGTTATTTTTGGTT+CGG | - | tig0028018:22320-22339 | Msa1436670:intron | 35.0% |
| TTAAGATTCTCTGACATGAG+GGG | + | tig0028018:22584-22603 | None:intergenic | 35.0% | |
| CTTAAGATTCTCTGACATGA+GGG | + | tig0028018:22585-22604 | None:intergenic | 35.0% | |
| TCTTAAGATTCTCTGACATG+AGG | + | tig0028018:22586-22605 | None:intergenic | 35.0% | |
| ACGACATGCAATTTGTATGT+TGG | - | tig0028018:23005-23024 | Msa1436670:intron | 35.0% | |
| TCTTCTTCTGCTTCTTCTTT+GGG | + | tig0028018:23257-23276 | None:intergenic | 35.0% | |
| CACTAAAAACAACTTCAGAG+AGG | - | tig0028018:23364-23383 | Msa1436670:intron | 35.0% | |
| ! | TCAATTTTGTGATTGTACGC+AGG | - | tig0028018:23435-23454 | Msa1436670:intron | 35.0% |
| ! | CAATTTTGTGATTGTACGCA+GGG | - | tig0028018:23436-23455 | Msa1436670:intron | 35.0% |
| ! | AATTTTGTGATTGTACGCAG+GGG | - | tig0028018:23437-23456 | Msa1436670:intron | 35.0% |
| CAAAATTCACTCGCTACAAA+CGG | + | tig0028018:23554-23573 | None:intergenic | 35.0% | |
| TCTTTCTTCTTACAGTTCCA+TGG | - | tig0028018:23727-23746 | Msa1436670:CDS | 35.0% | |
| GGAAAAAGATGAAGAAACCA+TGG | + | tig0028018:23747-23766 | None:intergenic | 35.0% | |
| ! | CTTCTATCTTGCAGGATTTT+GGG | - | tig0028018:24047-24066 | Msa1436670:five_prime_UTR | 35.0% |
| TTCCTTTGTGACATTGAACA+AGG | - | tig0028018:24137-24156 | Msa1436670:intron | 35.0% | |
| TCCTTTGTGACATTGAACAA+GGG | - | tig0028018:24138-24157 | Msa1436670:intron | 35.0% | |
| ! | TCTTTCCAAAAGCATACTTG+CGG | + | tig0028018:24194-24213 | None:intergenic | 35.0% |
| TTTGGAAAGATGCTTGTGAT+CGG | - | tig0028018:24204-24223 | Msa1436670:intron | 35.0% | |
| AATTGGGGGTCAATTGAAGT+TGG | + | tig0028018:20666-20685 | None:intergenic | 40.0% | |
| !! | ATTGACCCCCAATTTTGAGA+TGG | - | tig0028018:20672-20691 | Msa1436670:intron | 40.0% |
| !!! | TTGACCCCCAATTTTGAGAT+GGG | - | tig0028018:20673-20692 | Msa1436670:intron | 40.0% |
| AGACACCCATCTCAAAATTG+GGG | + | tig0028018:20681-20700 | None:intergenic | 40.0% | |
| GAGACACCCATCTCAAAATT+GGG | + | tig0028018:20682-20701 | None:intergenic | 40.0% | |
| AGAGACACCCATCTCAAAAT+TGG | + | tig0028018:20683-20702 | None:intergenic | 40.0% | |
| GGATTCATGTCGAGAAATTG+AGG | + | tig0028018:20715-20734 | None:intergenic | 40.0% | |
| TTTCTCGACATGAATCCTCT+TGG | - | tig0028018:20718-20737 | Msa1436670:intron | 40.0% | |
| ATAGCATTGCTCTCAAAGAC+AGG | + | tig0028018:20775-20794 | None:intergenic | 40.0% | |
| CTCAACAACAACACCTTGTA+TGG | - | tig0028018:20814-20833 | Msa1436670:intron | 40.0% | |
| TTCAGGCTCACATTGAACAA+TGG | - | tig0028018:20950-20969 | Msa1436670:intron | 40.0% | |
| ! | AAGTGGCTCTATCCAAGATT+GGG | - | tig0028018:21012-21031 | Msa1436670:intron | 40.0% |
| CTCTATCCAAGATTGGGATA+TGG | - | tig0028018:21018-21037 | Msa1436670:intron | 40.0% | |
| CTATCCAAGATTGGGATATG+GGG | - | tig0028018:21020-21039 | Msa1436670:intron | 40.0% | |
| ! | AATAAGTTTGGGATACGGTG+TGG | + | tig0028018:21143-21162 | None:intergenic | 40.0% |
| AAGCTAGCTATGTTTCCACA+AGG | - | tig0028018:21209-21228 | Msa1436670:CDS | 40.0% | |
| AGCTAGCTATGTTTCCACAA+GGG | - | tig0028018:21210-21229 | Msa1436670:CDS | 40.0% | |
| ATTTAAATTTGGCCCCCTTG+TGG | + | tig0028018:21227-21246 | None:intergenic | 40.0% | |
| !!! | TTCGGTTCGGTTCGTTTTTT+AGG | + | tig0028018:21359-21378 | None:intergenic | 40.0% |
| !!! | GGTTTTGTTCGTTCGGTTAT+AGG | + | tig0028018:21454-21473 | None:intergenic | 40.0% |
| ! | AGGATGAACACTTCTGAGAA+CGG | - | tig0028018:21840-21859 | Msa1436670:intron | 40.0% |
| TCCGAAAAAAAAGGGAAGCT+TGG | - | tig0028018:21932-21951 | Msa1436670:intron | 40.0% | |
| !!! | CGGTTATTTTTGGTTCGGTT+CGG | - | tig0028018:22325-22344 | Msa1436670:intron | 40.0% |
| ! | CGAAGCTATTTGTTGCCAAA+GGG | + | tig0028018:22561-22580 | None:intergenic | 40.0% |
| CTTGGGTGAAGTATATGTGT+CGG | + | tig0028018:22623-22642 | None:intergenic | 40.0% | |
| CACATATACTTCACCCAAGT+TGG | - | tig0028018:22624-22643 | Msa1436670:intron | 40.0% | |
| AAACCTATGAAGCACGGATA+CGG | + | tig0028018:22789-22808 | None:intergenic | 40.0% | |
| GCTGAAGAGATTGCAATTAC+TGG | - | tig0028018:22894-22913 | Msa1436670:intron | 40.0% | |
| AAGCATTCAAAGCTCTCTTC+AGG | + | tig0028018:22920-22939 | None:intergenic | 40.0% | |
| !! | CAAAAGTATCTCTCGACATG+AGG | + | tig0028018:23071-23090 | None:intergenic | 40.0% |
| ! | CTCATGTCGAGAGATACTTT+TGG | - | tig0028018:23069-23088 | Msa1436670:intron | 40.0% |
| CCTAATATCTTGCGGAAGTT+TGG | + | tig0028018:23110-23129 | None:intergenic | 40.0% | |
| CCAAACTTCCGCAAGATATT+AGG | - | tig0028018:23107-23126 | Msa1436670:intron | 40.0% | |
| ! | TGACTTGGCCTAATATCTTG+CGG | + | tig0028018:23118-23137 | None:intergenic | 40.0% |
| TTAGAATCTTTAGGCTGGGA+AGG | + | tig0028018:23182-23201 | None:intergenic | 40.0% | |
| TTCCCAGCCTAAAGATTCTA+AGG | - | tig0028018:23181-23200 | Msa1436670:intron | 40.0% | |
| !! | ACCTTGGCCTTAGAATCTTT+AGG | + | tig0028018:23191-23210 | None:intergenic | 40.0% |
| CTCTTCTTCTGCTTCTTCTT+TGG | + | tig0028018:23258-23277 | None:intergenic | 40.0% | |
| CAAAGAAGAAGCAGAAGAAG+AGG | - | tig0028018:23256-23275 | Msa1436670:intron | 40.0% | |
| AGAAGATCAAGGGGATTCTT+GGG | + | tig0028018:23296-23315 | None:intergenic | 40.0% | |
| AAGAAGATCAAGGGGATTCT+TGG | + | tig0028018:23297-23316 | None:intergenic | 40.0% | |
| TCATCCAGTATCATCTTGCT+TGG | + | tig0028018:23323-23342 | None:intergenic | 40.0% | |
| TTCAGAGAGGTTGCTATCAA+AGG | - | tig0028018:23377-23396 | Msa1436670:intron | 40.0% | |
| ATCTGGACTCAATATTGGTG+AGG | - | tig0028018:23463-23482 | Msa1436670:intron | 40.0% | |
| ! | CGTTTGTAGCGAGTGAATTT+TGG | - | tig0028018:23552-23571 | Msa1436670:CDS | 40.0% |
| !! | GTGTTTGTTGTTATGGGCTT+GGG | + | tig0028018:23640-23659 | None:intergenic | 40.0% |
| !! | TGTGTTTGTTGTTATGGGCT+TGG | + | tig0028018:23641-23660 | None:intergenic | 40.0% |
| !! | GCAGAAAAGAAGTATTGCAG+CGG | + | tig0028018:23706-23725 | None:intergenic | 40.0% |
| GTACTCTGCTTGTGATTGAT+GGG | - | tig0028018:23813-23832 | Msa1436670:intron | 40.0% | |
| TGAAAAAAATCAGCTTGGGC+TGG | - | tig0028018:23890-23909 | Msa1436670:CDS | 40.0% | |
| CATTGTGAAATTTGCGGTTC+TGG | - | tig0028018:23961-23980 | Msa1436670:intron | 40.0% | |
| CCAAAATCCTGCAAGATAGA+AGG | + | tig0028018:24049-24068 | None:intergenic | 40.0% | |
| ! | CCTTCTATCTTGCAGGATTT+TGG | - | tig0028018:24046-24065 | Msa1436670:five_prime_UTR | 40.0% |
| ACCCTTGTTCAATGTCACAA+AGG | + | tig0028018:24142-24161 | None:intergenic | 40.0% | |
| TTTGTGACATTGAACAAGGG+TGG | - | tig0028018:24141-24160 | Msa1436670:intron | 40.0% | |
| ! | CTTTCCAAAAGCATACTTGC+GGG | + | tig0028018:24193-24212 | None:intergenic | 40.0% |
| !!! | TGAGCCACCTTTTAAGGTAA+AGG | - | tig0028018:24230-24249 | Msa1436670:five_prime_UTR | 40.0% |
| !!! | GAGCCACCTTTTAAGGTAAA+GGG | - | tig0028018:24231-24250 | Msa1436670:five_prime_UTR | 40.0% |
| !!! | AGCCACCTTTTAAGGTAAAG+GGG | - | tig0028018:24232-24251 | Msa1436670:five_prime_UTR | 40.0% |
| ATTTAGGGATTTCTTGCCCA+CGG | + | tig0028018:24268-24287 | None:intergenic | 40.0% | |
| GTAAATCGCATAGCAGTGAG+AGG | - | tig0028018:20269-20288 | Msa1436670:CDS | 45.0% | |
| ! | ACAGAGGCAGTTAGTTTGAG+CGG | + | tig0028018:20318-20337 | None:intergenic | 45.0% |
| AGTCCAGATCGACCCTAATA+TGG | - | tig0028018:20481-20500 | Msa1436670:intron | 45.0% | |
| AAGCCATATTAGGGTCGATC+TGG | + | tig0028018:20487-20506 | None:intergenic | 45.0% | |
| GATCGACCCTAATATGGCTT+TGG | - | tig0028018:20487-20506 | Msa1436670:intron | 45.0% | |
| GACACCCATCTCAAAATTGG+GGG | + | tig0028018:20680-20699 | None:intergenic | 45.0% | |
| TCTCAAAGACAGGACCATCA+GGG | + | tig0028018:20765-20784 | None:intergenic | 45.0% | |
| ! | CAAGTGGCTCTATCCAAGAT+TGG | - | tig0028018:21011-21030 | Msa1436670:intron | 45.0% |
| GTAACCCCATATCCCAATCT+TGG | + | tig0028018:21027-21046 | None:intergenic | 45.0% | |
| AGAGAAGACTTACTGGAGGA+AGG | + | tig0028018:21049-21068 | None:intergenic | 45.0% | |
| GTTGAGGAGAGAAGACTTAC+TGG | + | tig0028018:21056-21075 | None:intergenic | 45.0% | |
| CAGATGTGTATGTCAGACAG+CGG | - | tig0028018:21184-21203 | Msa1436670:CDS | 45.0% | |
| GCTAGCTATGTTTCCACAAG+GGG | - | tig0028018:21211-21230 | Msa1436670:CDS | 45.0% | |
| CTAGCTATGTTTCCACAAGG+GGG | - | tig0028018:21212-21231 | Msa1436670:CDS | 45.0% | |
| !! | AGTGGTTTGGTCGGTTCAAA+CGG | - | tig0028018:22230-22249 | Msa1436670:intron | 45.0% |
| AAACGGTTCTCGGTTCAAGA+TGG | - | tig0028018:22247-22266 | Msa1436670:intron | 45.0% | |
| TTGTTGCCAAAGGGTAGCTT+TGG | + | tig0028018:22552-22571 | None:intergenic | 45.0% | |
| ! | GCGAAGCTATTTGTTGCCAA+AGG | + | tig0028018:22562-22581 | None:intergenic | 45.0% |
| TGTCAATGTGTCAGTGTCTG+TGG | - | tig0028018:22755-22774 | Msa1436670:intron | 45.0% | |
| !! | CTAGGTAAGTATTGGAGGCA+AGG | + | tig0028018:22953-22972 | None:intergenic | 45.0% |
| GCCTCCAATACTTACCTAGT+TGG | - | tig0028018:22954-22973 | Msa1436670:intron | 45.0% | |
| !! | GCCAACTAGGTAAGTATTGG+AGG | + | tig0028018:22958-22977 | None:intergenic | 45.0% |
| GTGGCCAACTAGGTAAGTAT+TGG | + | tig0028018:22961-22980 | None:intergenic | 45.0% | |
| TGTCGTTATGATGTCAGCCA+GGG | + | tig0028018:22991-23010 | None:intergenic | 45.0% | |
| ATGTCGTTATGATGTCAGCC+AGG | + | tig0028018:22992-23011 | None:intergenic | 45.0% | |
| ! | CGAGAGATACTTTTGGACCT+TGG | - | tig0028018:23076-23095 | Msa1436670:intron | 45.0% |
| GAAGTTTGGCTGATTGACCA+AGG | + | tig0028018:23096-23115 | None:intergenic | 45.0% | |
| GATATTAGGCCAAGTCAAGC+AGG | - | tig0028018:23121-23140 | Msa1436670:intron | 45.0% | |
| GGCTTCTTTGCAGATTGAAG+AGG | + | tig0028018:23161-23180 | None:intergenic | 45.0% | |
| GGCCTTAGAATCTTTAGGCT+GGG | + | tig0028018:23186-23205 | None:intergenic | 45.0% | |
| ! | TGGCCTTAGAATCTTTAGGC+TGG | + | tig0028018:23187-23206 | None:intergenic | 45.0% |
| !! | GCCTAAAGATTCTAAGGCCA+AGG | - | tig0028018:23187-23206 | Msa1436670:intron | 45.0% |
| ! | TTTGGGTTCGTCGTTTACCT+TGG | + | tig0028018:23207-23226 | None:intergenic | 45.0% |
| GGTAAACGACGAACCCAAAA+AGG | - | tig0028018:23208-23227 | Msa1436670:intron | 45.0% | |
| AAACGACGAACCCAAAAAGG+AGG | - | tig0028018:23211-23230 | Msa1436670:intron | 45.0% | |
| ! | ACCTTCTTGGCCTCCTTTTT+GGG | + | tig0028018:23224-23243 | None:intergenic | 45.0% |
| ! | GCTTCTTCTTTGGGCTTTTC+TGG | + | tig0028018:23248-23267 | None:intergenic | 45.0% |
| TCAAGGGGATTCTTGGGTTT+GGG | + | tig0028018:23290-23309 | None:intergenic | 45.0% | |
| ATCAAGGGGATTCTTGGGTT+TGG | + | tig0028018:23291-23310 | None:intergenic | 45.0% | |
| CTTGGAGGAAGAAGATCAAG+GGG | + | tig0028018:23305-23324 | None:intergenic | 45.0% | |
| GCTTGGAGGAAGAAGATCAA+GGG | + | tig0028018:23306-23325 | None:intergenic | 45.0% | |
| TGCTTGGAGGAAGAAGATCA+AGG | + | tig0028018:23307-23326 | None:intergenic | 45.0% | |
| TCCTCCAAGCAAGATGATAC+TGG | - | tig0028018:23316-23335 | Msa1436670:intron | 45.0% | |
| TCCAGTATCATCTTGCTTGG+AGG | + | tig0028018:23320-23339 | None:intergenic | 45.0% | |
| GCAAGATGATACTGGATGAC+TGG | - | tig0028018:23324-23343 | Msa1436670:intron | 45.0% | |
| ! | TGGTGAGGCACAATTTTTCG+CGG | - | tig0028018:23478-23497 | Msa1436670:intron | 45.0% |
| GGTACTCTGCTTGTGATTGA+TGG | - | tig0028018:23812-23831 | Msa1436670:intron | 45.0% | |
| TCACAATGTACAATCAGGGG+CGG | + | tig0028018:23949-23968 | None:intergenic | 45.0% | |
| TGGGACATGTATGATCCTGA+AGG | - | tig0028018:24066-24085 | Msa1436670:five_prime_UTR | 45.0% | |
| GGGACATGTATGATCCTGAA+GGG | - | tig0028018:24067-24086 | Msa1436670:five_prime_UTR | 45.0% | |
| ! | TTAGCCCGCAAGTATGCTTT+TGG | - | tig0028018:24186-24205 | Msa1436670:intron | 45.0% |
| CACCCCTTTACCTTAAAAGG+TGG | + | tig0028018:24237-24256 | None:intergenic | 45.0% | |
| CCACACCCCTTTACCTTAAA+AGG | + | tig0028018:24240-24259 | None:intergenic | 45.0% | |
| !!! | CCTTTTAAGGTAAAGGGGTG+TGG | - | tig0028018:24237-24256 | Msa1436670:five_prime_UTR | 45.0% |
| !!! | AATTATTTTAAAATAAGTTT+GGG | + | tig0028018:21154-21173 | None:intergenic | 5.0% |
| !! | TTATTTCATTTATTTAAATT+TGG | + | tig0028018:21238-21257 | None:intergenic | 5.0% |
| TTGAGCGGCGGAGTGATTTA+GGG | + | tig0028018:20303-20322 | None:intergenic | 50.0% | |
| TTTGAGCGGCGGAGTGATTT+AGG | + | tig0028018:20304-20323 | None:intergenic | 50.0% | |
| CGACATGAATCCTCTTGGCA+AGG | - | tig0028018:20723-20742 | Msa1436670:intron | 50.0% | |
| AAGACAGGAACCTTGCCAAG+AGG | + | tig0028018:20736-20755 | None:intergenic | 50.0% | |
| TCTTGGCAAGGTTCCTGTCT+TGG | - | tig0028018:20735-20754 | Msa1436670:intron | 50.0% | |
| CTCAAAGACAGGACCATCAG+GGG | + | tig0028018:20764-20783 | None:intergenic | 50.0% | |
| CTCTCAAAGACAGGACCATC+AGG | + | tig0028018:20766-20785 | None:intergenic | 50.0% | |
| GAGGAGAGAAGACTTACTGG+AGG | + | tig0028018:21053-21072 | None:intergenic | 50.0% | |
| GATACGGTGTGGCATGGATT+GGG | + | tig0028018:21132-21151 | None:intergenic | 50.0% | |
| ! | TGGTCGGTTCAAACGGTTCT+CGG | - | tig0028018:22237-22256 | Msa1436670:intron | 50.0% |
| GGTTCTCGGTTCAAGATGGT+TGG | - | tig0028018:22251-22270 | Msa1436670:intron | 50.0% | |
| ACGGACACTGACACATTCCT+CGG | - | tig0028018:22663-22682 | Msa1436670:intron | 50.0% | |
| !! | GTGTCAGATTTGGTGTGTCC+CGG | + | tig0028018:22690-22709 | None:intergenic | 50.0% |
| TGTCCGTATCCGTGCTTCAT+AGG | - | tig0028018:22783-22802 | Msa1436670:intron | 50.0% | |
| CTCGACATGAGGAAACTCTG+AGG | + | tig0028018:23060-23079 | None:intergenic | 50.0% | |
| ACCCAAAAAGGAGGCCAAGA+AGG | - | tig0028018:23220-23239 | Msa1436670:intron | 50.0% | |
| ! | CACCTTCTTGGCCTCCTTTT+TGG | + | tig0028018:23225-23244 | None:intergenic | 50.0% |
| GGATTCTTGGGTTTGGGCTT+GGG | + | tig0028018:23284-23303 | None:intergenic | 50.0% | |
| TTTGTGATTGTACGCAGGGG+CGG | - | tig0028018:23440-23459 | Msa1436670:intron | 50.0% | |
| GGCGGATCTGGACTCAATAT+TGG | - | tig0028018:23458-23477 | Msa1436670:intron | 50.0% | |
| !! | AAAATCAGCTTGGGCTGGTG+TGG | - | tig0028018:23895-23914 | Msa1436670:CDS | 50.0% |
| !! | ATCCTGAAGGGTACTCTCTC+TGG | - | tig0028018:24079-24098 | Msa1436670:intron | 50.0% |
| !! | AACCAGAGAGAGTACCCTTC+AGG | + | tig0028018:24084-24103 | None:intergenic | 50.0% |
| GTGACATTGAACAAGGGTGG+TGG | - | tig0028018:24144-24163 | Msa1436670:intron | 50.0% | |
| !! | AGGGTGGTGGATTTCTTCAG+CGG | - | tig0028018:24157-24176 | Msa1436670:intron | 50.0% |
| !! | TGGTGGATTTCTTCAGCGGA+TGG | - | tig0028018:24161-24180 | Msa1436670:intron | 50.0% |
| !!! | CGGTTCTGAGCCACCTTTTA+AGG | - | tig0028018:24224-24243 | Msa1436670:five_prime_UTR | 50.0% |
| ! | GAGGCAGTTAGTTTGAGCGG+CGG | + | tig0028018:20315-20334 | None:intergenic | 55.0% |
| CCATCAGGGGTTTCCAAGAC+AGG | + | tig0028018:20751-20770 | None:intergenic | 55.0% | |
| CCTGTCTTGGAAACCCCTGA+TGG | - | tig0028018:20748-20767 | Msa1436670:intron | 55.0% | |
| GGATACGGTGTGGCATGGAT+TGG | + | tig0028018:21133-21152 | None:intergenic | 55.0% | |
| ! | GTTTGGGATACGGTGTGGCA+TGG | + | tig0028018:21138-21157 | None:intergenic | 55.0% |
| GGGTAGCCAAAGCTACCCTT+TGG | - | tig0028018:22543-22562 | Msa1436670:intron | 55.0% | |
| CACTGACACATTCCTCGGAC+CGG | - | tig0028018:22668-22687 | Msa1436670:intron | 55.0% | |
| ACTGACACATTCCTCGGACC+GGG | - | tig0028018:22669-22688 | Msa1436670:intron | 55.0% | |
| CAGCTTCAGCCTGCTTGACT+TGG | + | tig0028018:23133-23152 | None:intergenic | 55.0% | |
| !! | GGGCTTTTCTGGCACCTTCT+TGG | + | tig0028018:23237-23256 | None:intergenic | 55.0% |
| GGGATTCTTGGGTTTGGGCT+TGG | + | tig0028018:23285-23304 | None:intergenic | 55.0% | |
| !! | AAAGGGGTGTGGCTTTTCCG+TGG | - | tig0028018:24248-24267 | Msa1436670:five_prime_UTR | 55.0% |
| !! | AAGGGGTGTGGCTTTTCCGT+GGG | - | tig0028018:24249-24268 | Msa1436670:five_prime_UTR | 55.0% |
| !! | ACGGTGTGGCATGGATTGGG+TGG | + | tig0028018:21129-21148 | None:intergenic | 60.0% |
| !! | TTGGTTCGGTTCGGTTCGCG+CGG | - | tig0028018:22334-22353 | Msa1436670:intron | 60.0% |
| !! | ATTTGGTGTGTCCCGGTCCG+AGG | + | tig0028018:22683-22702 | None:intergenic | 60.0% |
| GGGTGACAGAGTGGCCAACT+AGG | + | tig0028018:22971-22990 | None:intergenic | 60.0% | |
| AGTTGGCCACTCTGTCACCC+TGG | - | tig0028018:22971-22990 | Msa1436670:intron | 60.0% | |
| TGTCAGCCAGGGTGACAGAG+TGG | + | tig0028018:22980-22999 | None:intergenic | 60.0% | |
| ATTGTACGCAGGGGCGGATC+TGG | - | tig0028018:23446-23465 | Msa1436670:intron | 60.0% | |
| TGCCACACCAGGACCTGTTC+AGG | - | tig0028018:23922-23941 | Msa1436670:CDS | 60.0% | |
| GACCTGAACAGGTCCTGGTG+TGG | + | tig0028018:23927-23946 | None:intergenic | 60.0% | |
| AATCAGGGGCGGACCTGAAC+AGG | + | tig0028018:23938-23957 | None:intergenic | 60.0% | |
| CAGCAGCAGCAGCAGCAAGC+AGG | - | tig0028018:20455-20474 | Msa1436670:intron | 65.0% | |
| !! | TCGGTTCGGTTCGCGCGGTT+CGG | - | tig0028018:22339-22358 | Msa1436670:intron | 65.0% |
| !! | TCGGTTCGCGCGGTTCGGTT+CGG | - | tig0028018:22344-22363 | Msa1436670:intron | 65.0% |
| !! | GCGCGGTTCGGTTCGGTTCA+TGG | - | tig0028018:22351-22370 | Msa1436670:intron | 65.0% |
| GGTGTGGCACTTGCCACACC+AGG | - | tig0028018:23911-23930 | Msa1436670:CDS | 65.0% | |
| GGGCGGACCTGAACAGGTCC+TGG | + | tig0028018:23932-23951 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028018 | gene | 20248 | 24293 | 20248 | ID=Msa1436670;Name=Msa1436670 |
| tig0028018 | mRNA | 20248 | 24293 | 20248 | ID=Msa1436670-mRNA-1;Parent=Msa1436670;Name=Msa1436670-mRNA-1;_AED=0.20;_eAED=0.20;_QI=133|0.37|0.22|1|0.25|0.22|9|0|310 |
| tig0028018 | exon | 20248 | 20453 | 20248 | ID=Msa1436670-mRNA-1:exon:10377;Parent=Msa1436670-mRNA-1 |
| tig0028018 | exon | 20468 | 20480 | 20468 | ID=Msa1436670-mRNA-1:exon:10376;Parent=Msa1436670-mRNA-1 |
| tig0028018 | exon | 21156 | 21332 | 21156 | ID=Msa1436670-mRNA-1:exon:10375;Parent=Msa1436670-mRNA-1 |
| tig0028018 | exon | 21390 | 21617 | 21390 | ID=Msa1436670-mRNA-1:exon:10374;Parent=Msa1436670-mRNA-1 |
| tig0028018 | exon | 23500 | 23586 | 23500 | ID=Msa1436670-mRNA-1:exon:10373;Parent=Msa1436670-mRNA-1 |
| tig0028018 | exon | 23686 | 23796 | 23686 | ID=Msa1436670-mRNA-1:exon:10372;Parent=Msa1436670-mRNA-1 |
| tig0028018 | exon | 23845 | 23946 | 23845 | ID=Msa1436670-mRNA-1:exon:10371;Parent=Msa1436670-mRNA-1 |
| tig0028018 | exon | 24033 | 24086 | 24033 | ID=Msa1436670-mRNA-1:exon:10370;Parent=Msa1436670-mRNA-1 |
| tig0028018 | exon | 24206 | 24293 | 24206 | ID=Msa1436670-mRNA-1:exon:10369;Parent=Msa1436670-mRNA-1 |
| tig0028018 | five_prime_UTR | 24206 | 24293 | 24206 | ID=Msa1436670-mRNA-1:five_prime_utr;Parent=Msa1436670-mRNA-1 |
| tig0028018 | five_prime_UTR | 24042 | 24086 | 24042 | ID=Msa1436670-mRNA-1:five_prime_utr;Parent=Msa1436670-mRNA-1 |
| tig0028018 | CDS | 24033 | 24041 | 24033 | ID=Msa1436670-mRNA-1:cds;Parent=Msa1436670-mRNA-1 |
| tig0028018 | CDS | 23845 | 23946 | 23845 | ID=Msa1436670-mRNA-1:cds;Parent=Msa1436670-mRNA-1 |
| tig0028018 | CDS | 23686 | 23796 | 23686 | ID=Msa1436670-mRNA-1:cds;Parent=Msa1436670-mRNA-1 |
| tig0028018 | CDS | 23500 | 23586 | 23500 | ID=Msa1436670-mRNA-1:cds;Parent=Msa1436670-mRNA-1 |
| tig0028018 | CDS | 21390 | 21617 | 21390 | ID=Msa1436670-mRNA-1:cds;Parent=Msa1436670-mRNA-1 |
| tig0028018 | CDS | 21156 | 21332 | 21156 | ID=Msa1436670-mRNA-1:cds;Parent=Msa1436670-mRNA-1 |
| tig0028018 | CDS | 20468 | 20480 | 20468 | ID=Msa1436670-mRNA-1:cds;Parent=Msa1436670-mRNA-1 |
| tig0028018 | CDS | 20248 | 20453 | 20248 | ID=Msa1436670-mRNA-1:cds;Parent=Msa1436670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
