Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376240 | XP_013470448.1 | 97.614 | 503 | 10 | 2 | 1 | 503 | 1 | 501 | 0.0 | 981 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376240 | sp|Q9ZT96|MTEF4_ARATH | 53.435 | 393 | 183 | 0 | 74 | 466 | 112 | 504 | 5.80e-152 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376240 | A0A072VS35 | 97.614 | 503 | 10 | 2 | 1 | 503 | 1 | 501 | 0.0 | 981 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1376240 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1371700 | Msa1376240 | 0.938926 | 2.993378e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376240 | MtrunA17_Chr1g0212691 | 97.614 | 503 | 10 | 2 | 1 | 503 | 1 | 501 | 0.0 | 981 |
| Msa1376240 | MtrunA17_Chr8g0391881 | 86.616 | 396 | 20 | 3 | 34 | 429 | 12 | 374 | 0.0 | 668 |
| Msa1376240 | MtrunA17_Chr5g0428941 | 51.435 | 418 | 197 | 2 | 55 | 470 | 89 | 502 | 1.59e-151 | 443 |
| Msa1376240 | MtrunA17_Chr8g0391861 | 86.607 | 112 | 13 | 1 | 392 | 503 | 1 | 110 | 6.08e-53 | 175 |
| Msa1376240 | MtrunA17_Chr4g0034981 | 25.706 | 354 | 253 | 4 | 106 | 452 | 235 | 585 | 2.61e-35 | 139 |
| Msa1376240 | MtrunA17_Chr8g0391871 | 88.333 | 60 | 7 | 0 | 444 | 503 | 1 | 60 | 3.49e-29 | 109 |
| Msa1376240 | MtrunA17_Chr2g0294671 | 29.123 | 285 | 190 | 6 | 177 | 457 | 211 | 487 | 1.44e-28 | 118 |
| Msa1376240 | MtrunA17_Chr2g0294671 | 22.348 | 264 | 179 | 5 | 69 | 328 | 189 | 430 | 1.88e-12 | 69.3 |
| Msa1376240 | MtrunA17_Chr6g0448821 | 27.164 | 335 | 238 | 6 | 126 | 458 | 32 | 362 | 6.05e-28 | 115 |
| Msa1376240 | MtrunA17_Chr4g0043941 | 22.115 | 312 | 199 | 5 | 147 | 453 | 47 | 319 | 2.78e-25 | 106 |
| Msa1376240 | MtrunA17_Chr4g0043941 | 25.108 | 231 | 147 | 3 | 84 | 313 | 45 | 250 | 3.31e-17 | 82.8 |
| Msa1376240 | MtrunA17_Chr5g0445491 | 24.373 | 279 | 200 | 7 | 163 | 434 | 176 | 450 | 2.47e-19 | 90.9 |
| Msa1376240 | MtrunA17_Chr5g0445491 | 23.881 | 268 | 188 | 7 | 83 | 338 | 194 | 457 | 1.26e-15 | 79.3 |
| Msa1376240 | MtrunA17_Chr2g0304101 | 26.923 | 208 | 116 | 3 | 283 | 454 | 99 | 306 | 4.04e-16 | 79.3 |
| Msa1376240 | MtrunA17_Chr5g0417641 | 26.639 | 244 | 139 | 5 | 212 | 453 | 88 | 293 | 1.17e-14 | 74.7 |
| Msa1376240 | MtrunA17_Chr2g0311181 | 23.582 | 335 | 164 | 12 | 147 | 475 | 75 | 323 | 1.23e-14 | 75.1 |
| Msa1376240 | MtrunA17_Chr3g0127891 | 22.819 | 298 | 184 | 7 | 160 | 452 | 235 | 491 | 1.00e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376240 | AT2G44020.1 | 74.653 | 505 | 125 | 3 | 1 | 503 | 4 | 507 | 0.0 | 761 |
| Msa1376240 | AT4G02990.2 | 53.435 | 393 | 183 | 0 | 74 | 466 | 112 | 504 | 5.90e-153 | 447 |
| Msa1376240 | AT4G02990.1 | 53.435 | 393 | 183 | 0 | 74 | 466 | 112 | 504 | 5.90e-153 | 447 |
| Msa1376240 | AT2G21710.1 | 25.000 | 352 | 260 | 3 | 138 | 488 | 278 | 626 | 4.19e-39 | 150 |
| Msa1376240 | AT2G21710.1 | 26.070 | 257 | 176 | 5 | 68 | 313 | 272 | 525 | 1.18e-17 | 86.7 |
| Msa1376240 | AT1G78930.1 | 26.488 | 336 | 240 | 6 | 126 | 458 | 249 | 580 | 2.59e-31 | 127 |
| Msa1376240 | AT4G38160.4 | 25.912 | 274 | 194 | 4 | 189 | 456 | 54 | 324 | 4.39e-29 | 117 |
| Msa1376240 | AT4G38160.4 | 23.902 | 205 | 154 | 2 | 126 | 328 | 63 | 267 | 1.23e-15 | 78.6 |
| Msa1376240 | AT4G38160.1 | 25.912 | 274 | 194 | 4 | 189 | 456 | 54 | 324 | 4.39e-29 | 117 |
| Msa1376240 | AT4G38160.1 | 23.902 | 205 | 154 | 2 | 126 | 328 | 63 | 267 | 1.23e-15 | 78.6 |
| Msa1376240 | AT4G38160.2 | 25.912 | 274 | 194 | 4 | 189 | 456 | 54 | 324 | 9.17e-29 | 117 |
| Msa1376240 | AT4G38160.2 | 23.902 | 205 | 154 | 2 | 126 | 328 | 63 | 267 | 1.76e-15 | 78.6 |
| Msa1376240 | AT4G38160.3 | 25.912 | 274 | 194 | 4 | 189 | 456 | 54 | 324 | 1.31e-28 | 117 |
| Msa1376240 | AT4G38160.3 | 23.902 | 205 | 154 | 2 | 126 | 328 | 63 | 267 | 2.09e-15 | 78.2 |
| Msa1376240 | AT2G21710.2 | 23.929 | 280 | 211 | 2 | 138 | 416 | 278 | 556 | 4.84e-27 | 115 |
| Msa1376240 | AT2G21710.2 | 26.070 | 257 | 176 | 5 | 68 | 313 | 272 | 525 | 1.05e-17 | 86.7 |
| Msa1376240 | AT2G21710.3 | 23.741 | 278 | 210 | 2 | 138 | 414 | 278 | 554 | 4.41e-26 | 112 |
| Msa1376240 | AT2G21710.3 | 26.070 | 257 | 176 | 5 | 68 | 313 | 272 | 525 | 1.26e-17 | 86.3 |
| Msa1376240 | AT4G14605.2 | 25.130 | 386 | 268 | 9 | 75 | 453 | 97 | 468 | 9.11e-24 | 104 |
| Msa1376240 | AT4G14605.1 | 25.130 | 386 | 268 | 9 | 75 | 453 | 97 | 468 | 9.11e-24 | 104 |
| Msa1376240 | AT5G55580.2 | 26.484 | 219 | 154 | 4 | 219 | 432 | 119 | 335 | 1.26e-18 | 88.2 |
| Msa1376240 | AT5G55580.2 | 25.000 | 260 | 180 | 7 | 81 | 328 | 79 | 335 | 8.67e-16 | 79.7 |
| Msa1376240 | AT5G55580.2 | 23.853 | 218 | 160 | 3 | 145 | 360 | 117 | 330 | 3.63e-14 | 74.7 |
| Msa1376240 | AT5G55580.1 | 26.484 | 219 | 154 | 4 | 219 | 432 | 225 | 441 | 7.62e-18 | 86.7 |
| Msa1376240 | AT5G55580.1 | 25.000 | 260 | 180 | 7 | 81 | 328 | 185 | 441 | 1.05e-15 | 80.1 |
| Msa1376240 | AT5G55580.1 | 23.853 | 218 | 160 | 3 | 145 | 360 | 223 | 436 | 1.03e-13 | 73.9 |
| Msa1376240 | AT1G61970.2 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.40e-16 | 81.3 |
| Msa1376240 | AT1G61970.7 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.40e-16 | 81.3 |
| Msa1376240 | AT1G61970.6 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.40e-16 | 81.3 |
| Msa1376240 | AT1G61970.3 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.40e-16 | 81.3 |
| Msa1376240 | AT1G61970.5 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.40e-16 | 81.3 |
| Msa1376240 | AT1G61970.4 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.40e-16 | 81.3 |
| Msa1376240 | AT1G61970.1 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.40e-16 | 81.3 |
| Msa1376240 | AT5G54180.1 | 22.973 | 296 | 185 | 7 | 162 | 454 | 235 | 490 | 8.91e-15 | 77.0 |
| Msa1376240 | AT1G61980.3 | 24.118 | 340 | 235 | 10 | 138 | 464 | 81 | 410 | 1.21e-14 | 76.3 |
| Msa1376240 | AT1G61980.2 | 24.118 | 340 | 235 | 10 | 138 | 464 | 81 | 410 | 1.21e-14 | 76.3 |
| Msa1376240 | AT1G61980.1 | 24.118 | 340 | 235 | 10 | 138 | 464 | 81 | 410 | 1.21e-14 | 76.3 |
| Msa1376240 | AT2G34620.1 | 26.887 | 212 | 119 | 4 | 283 | 458 | 85 | 296 | 2.32e-13 | 71.2 |
| Msa1376240 | AT2G03050.1 | 29.317 | 249 | 151 | 9 | 219 | 456 | 38 | 272 | 7.32e-13 | 69.7 |
| Msa1376240 | AT2G03050.2 | 29.317 | 249 | 151 | 9 | 219 | 456 | 39 | 273 | 1.06e-12 | 68.9 |
| Msa1376240 | AT5G55580.3 | 25.000 | 172 | 127 | 2 | 145 | 314 | 223 | 394 | 2.38e-12 | 68.9 |
| Msa1376240 | AT5G55580.3 | 26.425 | 193 | 130 | 5 | 81 | 261 | 185 | 377 | 1.05e-11 | 67.0 |
| Msa1376240 | AT2G36000.2 | 23.506 | 251 | 169 | 8 | 219 | 460 | 79 | 315 | 3.06e-12 | 68.2 |
| Msa1376240 | AT2G36000.1 | 23.387 | 248 | 167 | 8 | 219 | 457 | 79 | 312 | 8.03e-12 | 67.0 |
| Msa1376240 | AT1G62110.1 | 22.139 | 402 | 222 | 10 | 141 | 464 | 58 | 446 | 7.66e-11 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTATCCTTTGATTT+TGG | 0.075546 | tig0019789:-41512 | Msa1376240:CDS |
| GTTGAGTTTATTCAGAAATT+AGG | 0.154219 | tig0019789:-41553 | Msa1376240:CDS |
| GTTGATTACTTGGTTAATTT+AGG | 0.162887 | tig0019789:-41133 | Msa1376240:CDS |
| CCTAAAATTGTTTGAAGTTT+GGG | 0.180617 | tig0019789:+41789 | None:intergenic |
| GCTCAGTATCCGCAGATTAT+TGG | 0.210052 | tig0019789:-40971 | Msa1376240:CDS |
| TCCTAAAATTGTTTGAAGTT+TGG | 0.211802 | tig0019789:+41788 | None:intergenic |
| CATCTCGTATTCGGGAAATT+TGG | 0.226817 | tig0019789:+41726 | None:intergenic |
| TCCTGATGAATTGCAGGATT+TGG | 0.241747 | tig0019789:-41611 | Msa1376240:CDS |
| AAAGTATAGGTCCTTCATTC+TGG | 0.247502 | tig0019789:-40499 | Msa1376240:CDS |
| TTGATTACTTGGTTAATTTA+GGG | 0.247846 | tig0019789:-41132 | Msa1376240:CDS |
| TTGTTTGAAGTTTGGGGATT+TGG | 0.270604 | tig0019789:+41796 | None:intergenic |
| TCACTTATAGTTTGGAATCT+AGG | 0.287748 | tig0019789:-40640 | Msa1376240:CDS |
| AGAATACTTCACTTATAGTT+TGG | 0.295127 | tig0019789:-40648 | Msa1376240:CDS |
| CTTCGATTATCTCAAGGGTT+TGG | 0.298946 | tig0019789:-41641 | Msa1376240:CDS |
| GTTTCACTATTCAATCTCTA+TGG | 0.304516 | tig0019789:-41763 | Msa1376240:CDS |
| GTTGATTGTTTGATTAGTTT+TGG | 0.307251 | tig0019789:-41025 | Msa1376240:CDS |
| CTCTTAAGCCTCTGGTATCT+AGG | 0.309752 | tig0019789:+40611 | None:intergenic |
| TTCGATTATCTCAAGGGTTT+GGG | 0.314201 | tig0019789:-41640 | Msa1376240:CDS |
| GGATAAAGTGTTCATTGAAT+TGG | 0.316271 | tig0019789:-40583 | Msa1376240:CDS |
| ATTCGGGAAATTTGGAATCT+TGG | 0.321586 | tig0019789:+41734 | None:intergenic |
| AACAGTAGGCATCTCGTATT+CGG | 0.325045 | tig0019789:+41717 | None:intergenic |
| TGGGGATTTGGAAGTGCATT+TGG | 0.329507 | tig0019789:+41808 | None:intergenic |
| TTGAGTTTATTCAGAAATTA+GGG | 0.329984 | tig0019789:-41552 | Msa1376240:CDS |
| AGCTTAAACCCTAAAAGTTC+AGG | 0.348375 | tig0019789:+41286 | None:intergenic |
| ATGTAGAGAAAGATGATATT+GGG | 0.358260 | tig0019789:-41327 | Msa1376240:CDS |
| AATTATTCCTGATGAATTGC+AGG | 0.358521 | tig0019789:-41617 | Msa1376240:CDS |
| CCTGTTATTAAGTTTCTTAG+AGG | 0.361016 | tig0019789:-41355 | Msa1376240:CDS |
| AAACTATAAGTGAAGTATTC+TGG | 0.362016 | tig0019789:+40650 | None:intergenic |
| AAAGCCTCTTGTTGATTACT+TGG | 0.364443 | tig0019789:-41143 | Msa1376240:CDS |
| TCAAAATGTGATTATGAAAC+CGG | 0.364444 | tig0019789:-40831 | Msa1376240:CDS |
| CTAATCAAACAATCAACATT+AGG | 0.365413 | tig0019789:+41031 | None:intergenic |
| ATCTGAAACTATATCATTCC+CGG | 0.367449 | tig0019789:+40454 | None:intergenic |
| CCTCTAAGAAACTTAATAAC+AGG | 0.368936 | tig0019789:+41355 | None:intergenic |
| TTCGGGAAATTTGGAATCTT+GGG | 0.373205 | tig0019789:+41735 | None:intergenic |
| GTTGCTTATCTTGTTAGTAT+TGG | 0.373295 | tig0019789:-41241 | Msa1376240:CDS |
| TTAGTATTGGTGTTAATCCT+AGG | 0.373470 | tig0019789:-41228 | Msa1376240:CDS |
| GAAGTGCATTTGGATTTAAT+TGG | 0.374790 | tig0019789:+41818 | None:intergenic |
| GATGTAGAGAAAGATGATAT+TGG | 0.374971 | tig0019789:-41328 | Msa1376240:CDS |
| TCCCCTTGCTCTTAAGCCTC+TGG | 0.375995 | tig0019789:+40603 | None:intergenic |
| GAAGACAATTTCGCCTTAAG+AGG | 0.388607 | tig0019789:+40944 | None:intergenic |
| GATTATTGGATTGCCTCTTA+AGG | 0.391397 | tig0019789:-40957 | Msa1376240:CDS |
| GAGATTTGAAGAGAGATTGC+AGG | 0.401297 | tig0019789:-40540 | Msa1376240:CDS |
| GTCGCAGGATGTGGCTAGTA+TGG | 0.403205 | tig0019789:-40780 | Msa1376240:CDS |
| TCCTAGGGATATTGGTCCTA+TGG | 0.421118 | tig0019789:-41212 | Msa1376240:CDS |
| ACAGTAGGCATCTCGTATTC+GGG | 0.424676 | tig0019789:+41718 | None:intergenic |
| CTCATGACTTCAACGGTTGA+AGG | 0.424949 | tig0019789:+41583 | None:intergenic |
| GAGAAAAGAGCTTATTTACT+TGG | 0.425844 | tig0019789:-41079 | Msa1376240:CDS |
| ACCACCCTCGCAAACCCTTC+CGG | 0.428125 | tig0019789:+40884 | None:intergenic |
| GAATGAAGGACCTATACTTT+CGG | 0.432637 | tig0019789:+40502 | None:intergenic |
| TATTCAGAAATTAGGGTTAA+CGG | 0.433903 | tig0019789:-41545 | Msa1376240:CDS |
| GCAATCTCTCTTCAAATCTC+TGG | 0.437449 | tig0019789:+40543 | None:intergenic |
| TCCGGAAGGGTTTGCGAGGG+TGG | 0.445823 | tig0019789:-40885 | Msa1376240:CDS |
| GGTGTTAATCCTAGGGATAT+TGG | 0.451217 | tig0019789:-41220 | Msa1376240:CDS |
| TATAGTTTCAGATGAGGAAG+AGG | 0.454451 | tig0019789:-40444 | Msa1376240:CDS |
| TACTTCTTCAAAAGTGAGAT+GGG | 0.459036 | tig0019789:-40701 | Msa1376240:CDS |
| GGAAGGGTTTGCGAGGGTGG+TGG | 0.459551 | tig0019789:-40882 | Msa1376240:CDS |
| CGAGATGCCTACTGTTACAT+GGG | 0.462699 | tig0019789:-41710 | Msa1376240:CDS |
| TCCAAATCCTGCAATTCATC+AGG | 0.465291 | tig0019789:+41610 | None:intergenic |
| GCGAAACGAGTTTCTCTTTG+CGG | 0.473966 | tig0019789:+41674 | None:intergenic |
| ATCCTAGCTAGAATCTTCTT+AGG | 0.491214 | tig0019789:+41106 | None:intergenic |
| GGGATTTCTAGGTCTAAACT+TGG | 0.492563 | tig0019789:-41436 | Msa1376240:CDS |
| CTAAAATTGTTTGAAGTTTG+GGG | 0.495684 | tig0019789:+41790 | None:intergenic |
| GTTACATGGGGTGTCATTCA+AGG | 0.496359 | tig0019789:-41697 | Msa1376240:CDS |
| TACCAGAGGCTTAAGAGCAA+GGG | 0.502139 | tig0019789:-40605 | Msa1376240:CDS |
| CATCATCTTCGATTATCTCA+AGG | 0.503798 | tig0019789:-41647 | Msa1376240:CDS |
| GGCAATACCGTCGCAGGATG+TGG | 0.504137 | tig0019789:-40789 | Msa1376240:CDS |
| TTTGAAGCTTAAGATTGATC+CGG | 0.506836 | tig0019789:-40903 | Msa1376240:CDS |
| TTACTTCTTCAAAAGTGAGA+TGG | 0.508844 | tig0019789:-40702 | Msa1376240:CDS |
| GGTCCTTCATTCTGGATTGG+TGG | 0.510705 | tig0019789:-40491 | Msa1376240:CDS |
| GTCCTTCATTCTGGATTGGT+GGG | 0.516545 | tig0019789:-40490 | Msa1376240:CDS |
| ATAGGTCCTTCATTCTGGAT+TGG | 0.517859 | tig0019789:-40494 | Msa1376240:CDS |
| TAGTATTGGTGTTAATCCTA+GGG | 0.522188 | tig0019789:-41227 | Msa1376240:CDS |
| ACGAGATGCCTACTGTTACA+TGG | 0.523419 | tig0019789:-41711 | Msa1376240:CDS |
| ATCATCTTCGATTATCTCAA+GGG | 0.534022 | tig0019789:-41646 | Msa1376240:CDS |
| ATTGTTCTGCTAAAGAGAAA+CGG | 0.538058 | tig0019789:+40391 | None:intergenic |
| TATATCGAAACCGAAAGTAT+AGG | 0.540273 | tig0019789:-40512 | Msa1376240:CDS |
| GAGGAAGGAATGTTTGCCCT+CGG | 0.544202 | tig0019789:-40999 | Msa1376240:CDS |
| AGCTTAAGATTGATCCGGAA+GGG | 0.556415 | tig0019789:-40898 | Msa1376240:CDS |
| TTCCCACCAATCCAGAATGA+AGG | 0.560953 | tig0019789:+40488 | None:intergenic |
| AGATTTGAAGAGAGATTGCA+GGG | 0.561148 | tig0019789:-40539 | Msa1376240:CDS |
| GGGAAATTTGGAATCTTGGG+TGG | 0.563247 | tig0019789:+41738 | None:intergenic |
| GCAAAGAGAAACTCGTTTCG+CGG | 0.565498 | tig0019789:-41672 | Msa1376240:CDS |
| ATACCAGAGGCTTAAGAGCA+AGG | 0.565715 | tig0019789:-40606 | Msa1376240:CDS |
| CTTCAACCGTTGAAGTCATG+AGG | 0.566630 | tig0019789:-41582 | Msa1376240:CDS |
| CAAAGAGAAACTCGTTTCGC+GGG | 0.570276 | tig0019789:-41671 | Msa1376240:CDS |
| GAAGATTCTAGCTAGGATGT+TGG | 0.572863 | tig0019789:-41101 | Msa1376240:CDS |
| ACACTAGCATGCAAAACTTG+TGG | 0.577739 | tig0019789:+41394 | None:intergenic |
| TGGTAGGGCAATACCGTCGC+AGG | 0.580954 | tig0019789:-40795 | Msa1376240:CDS |
| GAGACCTGTAAAAGAGCTTG+TGG | 0.581965 | tig0019789:-40678 | Msa1376240:CDS |
| ACGTTCCCTCATGACTTCAA+CGG | 0.586865 | tig0019789:+41576 | None:intergenic |
| TAAGGATACTGTGTAACCAT+AGG | 0.587849 | tig0019789:+41196 | None:intergenic |
| GGTGATCAAGTGTCCTCAGT+TGG | 0.594291 | tig0019789:-40759 | Msa1376240:CDS |
| ACACTACAACCCAAAATCAA+AGG | 0.594517 | tig0019789:+41502 | None:intergenic |
| ACCAGAGGCTTAAGAGCAAG+GGG | 0.605082 | tig0019789:-40604 | Msa1376240:CDS |
| TTAACCAAGTAATCAACAAG+AGG | 0.605793 | tig0019789:+41139 | None:intergenic |
| TCTGAAACTATATCATTCCC+GGG | 0.612098 | tig0019789:+40455 | None:intergenic |
| TTGATCCGGAAGGGTTTGCG+AGG | 0.614047 | tig0019789:-40889 | Msa1376240:CDS |
| GTGGGAAATTAGAGCTACCC+GGG | 0.615038 | tig0019789:-40472 | Msa1376240:CDS |
| ACTCGCAGCGCAACCAACTG+AGG | 0.617167 | tig0019789:+40746 | None:intergenic |
| GGTGGGAAATTAGAGCTACC+CGG | 0.618425 | tig0019789:-40473 | Msa1376240:CDS |
| TGCCTAAGAAGATTCTAGCT+AGG | 0.620780 | tig0019789:-41108 | Msa1376240:CDS |
| AAGCTTAAGATTGATCCGGA+AGG | 0.621599 | tig0019789:-40899 | Msa1376240:CDS |
| GGTGGTGGAGAAGATGCCAC+AGG | 0.628330 | tig0019789:-40867 | Msa1376240:CDS |
| TTCAACCGTTGAAGTCATGA+GGG | 0.641557 | tig0019789:-41581 | Msa1376240:CDS |
| ACCATAGGACCAATATCCCT+AGG | 0.641670 | tig0019789:+41211 | None:intergenic |
| ACTTCTTCAAAAGTGAGATG+GGG | 0.645282 | tig0019789:-40700 | Msa1376240:CDS |
| ATGACACCCCATGTAACAGT+AGG | 0.649004 | tig0019789:+41703 | None:intergenic |
| TGATGAAGACTAACCACCTG+TGG | 0.651476 | tig0019789:+40851 | None:intergenic |
| TGATCCGGAAGGGTTTGCGA+GGG | 0.652425 | tig0019789:-40888 | Msa1376240:CDS |
| GAATGATATAGTTTCAGATG+AGG | 0.656227 | tig0019789:-40450 | Msa1376240:CDS |
| TGCGTGATGAAAGTATATTG+AGG | 0.677283 | tig0019789:+41869 | None:intergenic |
| ATACTAGCCACATCCTGCGA+CGG | 0.678965 | tig0019789:+40782 | None:intergenic |
| GGTGGAGAAGATGCCACAGG+TGG | 0.679410 | tig0019789:-40864 | Msa1376240:CDS |
| AGAGGCAATCCAATAATCTG+CGG | 0.679844 | tig0019789:+40962 | None:intergenic |
| GGATTAAACCTAGATACCAG+AGG | 0.689589 | tig0019789:-40619 | Msa1376240:CDS |
| GGATACTGAGCAATAACCGA+GGG | 0.697015 | tig0019789:+40983 | None:intergenic |
| CGGATACTGAGCAATAACCG+AGG | 0.701830 | tig0019789:+40982 | None:intergenic |
| GAGATGCCTACTGTTACATG+GGG | 0.725465 | tig0019789:-41709 | Msa1376240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAGTTTATTCAGAAATTA+GGG | - | tig0019789:40737-40756 | Msa1376240:CDS | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | - | tig0019789:40832-40851 | Msa1376240:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | - | tig0019789:40833-40852 | Msa1376240:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | - | tig0019789:40995-41014 | Msa1376240:CDS | 20.0% |
| !! | TTGATTACTTGGTTAATTTA+GGG | - | tig0019789:41157-41176 | Msa1376240:CDS | 20.0% |
| !! | TTGAGTTTATTCAGAAATTA+GGG | - | tig0019789:40737-40756 | Msa1376240:CDS | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | - | tig0019789:40832-40851 | Msa1376240:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | - | tig0019789:40833-40852 | Msa1376240:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | - | tig0019789:40995-41014 | Msa1376240:CDS | 20.0% |
| !! | TTGATTACTTGGTTAATTTA+GGG | - | tig0019789:41157-41176 | Msa1376240:CDS | 20.0% |
| !! | CTAAAATTGTTTGAAGTTTG+GGG | + | tig0019789:40502-40521 | None:intergenic | 25.0% |
| !! | CCTAAAATTGTTTGAAGTTT+GGG | + | tig0019789:40503-40522 | None:intergenic | 25.0% |
| !! | TCCTAAAATTGTTTGAAGTT+TGG | + | tig0019789:40504-40523 | None:intergenic | 25.0% |
| !! | AAACTTCAAACAATTTTAGG+AGG | - | tig0019789:40503-40522 | Msa1376240:CDS | 25.0% |
| !!! | AACTTCAAACAATTTTAGGA+GGG | - | tig0019789:40504-40523 | Msa1376240:CDS | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | - | tig0019789:40736-40755 | Msa1376240:CDS | 25.0% |
| ! | TATTCAGAAATTAGGGTTAA+CGG | - | tig0019789:40744-40763 | Msa1376240:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | - | tig0019789:40777-40796 | Msa1376240:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | - | tig0019789:40778-40797 | Msa1376240:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | - | tig0019789:40814-40833 | Msa1376240:CDS | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | - | tig0019789:40815-40834 | Msa1376240:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | + | tig0019789:40829-40848 | None:intergenic | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | - | tig0019789:40842-40861 | Msa1376240:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | - | tig0019789:40962-40981 | Msa1376240:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | - | tig0019789:40994-41013 | Msa1376240:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | - | tig0019789:41102-41121 | Msa1376240:CDS | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | - | tig0019789:41103-41122 | Msa1376240:CDS | 25.0% |
| ! | GTTGATTACTTGGTTAATTT+AGG | - | tig0019789:41156-41175 | Msa1376240:CDS | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | + | tig0019789:41261-41280 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | - | tig0019789:41264-41283 | Msa1376240:CDS | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | - | tig0019789:41458-41477 | Msa1376240:CDS | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | + | tig0019789:41642-41661 | None:intergenic | 25.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | - | tig0019789:41641-41660 | Msa1376240:CDS | 25.0% |
| !! | CTAAAATTGTTTGAAGTTTG+GGG | + | tig0019789:40502-40521 | None:intergenic | 25.0% |
| !! | CCTAAAATTGTTTGAAGTTT+GGG | + | tig0019789:40503-40522 | None:intergenic | 25.0% |
| !! | TCCTAAAATTGTTTGAAGTT+TGG | + | tig0019789:40504-40523 | None:intergenic | 25.0% |
| !! | AAACTTCAAACAATTTTAGG+AGG | - | tig0019789:40503-40522 | Msa1376240:CDS | 25.0% |
| !!! | AACTTCAAACAATTTTAGGA+GGG | - | tig0019789:40504-40523 | Msa1376240:CDS | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | - | tig0019789:40736-40755 | Msa1376240:CDS | 25.0% |
| ! | TATTCAGAAATTAGGGTTAA+CGG | - | tig0019789:40744-40763 | Msa1376240:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | - | tig0019789:40777-40796 | Msa1376240:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | - | tig0019789:40778-40797 | Msa1376240:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | - | tig0019789:40814-40833 | Msa1376240:CDS | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | - | tig0019789:40815-40834 | Msa1376240:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | + | tig0019789:40829-40848 | None:intergenic | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | - | tig0019789:40842-40861 | Msa1376240:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | - | tig0019789:40962-40981 | Msa1376240:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | - | tig0019789:40994-41013 | Msa1376240:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | - | tig0019789:41102-41121 | Msa1376240:CDS | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | - | tig0019789:41103-41122 | Msa1376240:CDS | 25.0% |
| ! | GTTGATTACTTGGTTAATTT+AGG | - | tig0019789:41156-41175 | Msa1376240:CDS | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | + | tig0019789:41261-41280 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | - | tig0019789:41264-41283 | Msa1376240:CDS | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | - | tig0019789:41458-41477 | Msa1376240:CDS | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | + | tig0019789:41642-41661 | None:intergenic | 25.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | - | tig0019789:41641-41660 | Msa1376240:CDS | 25.0% |
| GAAGTGCATTTGGATTTAAT+TGG | + | tig0019789:40474-40493 | None:intergenic | 30.0% | |
| ! | CCCAAACTTCAAACAATTTT+AGG | - | tig0019789:40500-40519 | Msa1376240:CDS | 30.0% |
| GTTTCACTATTCAATCTCTA+TGG | - | tig0019789:40526-40545 | Msa1376240:CDS | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | - | tig0019789:40643-40662 | Msa1376240:CDS | 30.0% | |
| AATTATTCCTGATGAATTGC+AGG | - | tig0019789:40672-40691 | Msa1376240:CDS | 30.0% | |
| ! | CCTCTAAGAAACTTAATAAC+AGG | + | tig0019789:40937-40956 | None:intergenic | 30.0% |
| CCTGTTATTAAGTTTCTTAG+AGG | - | tig0019789:40934-40953 | Msa1376240:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | - | tig0019789:40961-40980 | Msa1376240:CDS | 30.0% | |
| GTTGCTTATCTTGTTAGTAT+TGG | - | tig0019789:41048-41067 | Msa1376240:CDS | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | - | tig0019789:41061-41080 | Msa1376240:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | - | tig0019789:41062-41081 | Msa1376240:CDS | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | + | tig0019789:41114-41133 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | - | tig0019789:41114-41133 | Msa1376240:CDS | 30.0% |
| TTAACCAAGTAATCAACAAG+AGG | + | tig0019789:41153-41172 | None:intergenic | 30.0% | |
| GAGAAAAGAGCTTATTTACT+TGG | - | tig0019789:41210-41229 | Msa1376240:CDS | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | - | tig0019789:41271-41290 | Msa1376240:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | - | tig0019789:41386-41405 | Msa1376240:CDS | 30.0% |
| TTACTTCTTCAAAAGTGAGA+TGG | - | tig0019789:41587-41606 | Msa1376240:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | - | tig0019789:41588-41607 | Msa1376240:CDS | 30.0% | |
| ! | TCACTTATAGTTTGGAATCT+AGG | - | tig0019789:41649-41668 | Msa1376240:CDS | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | - | tig0019789:41706-41725 | Msa1376240:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | - | tig0019789:41777-41796 | Msa1376240:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | + | tig0019789:41838-41857 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | - | tig0019789:41839-41858 | Msa1376240:CDS | 30.0% | |
| GAAGTGCATTTGGATTTAAT+TGG | + | tig0019789:40474-40493 | None:intergenic | 30.0% | |
| ! | CCCAAACTTCAAACAATTTT+AGG | - | tig0019789:40500-40519 | Msa1376240:CDS | 30.0% |
| GTTTCACTATTCAATCTCTA+TGG | - | tig0019789:40526-40545 | Msa1376240:CDS | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | - | tig0019789:40643-40662 | Msa1376240:CDS | 30.0% | |
| AATTATTCCTGATGAATTGC+AGG | - | tig0019789:40672-40691 | Msa1376240:CDS | 30.0% | |
| ! | CCTCTAAGAAACTTAATAAC+AGG | + | tig0019789:40937-40956 | None:intergenic | 30.0% |
| CCTGTTATTAAGTTTCTTAG+AGG | - | tig0019789:40934-40953 | Msa1376240:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | - | tig0019789:40961-40980 | Msa1376240:CDS | 30.0% | |
| GTTGCTTATCTTGTTAGTAT+TGG | - | tig0019789:41048-41067 | Msa1376240:CDS | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | - | tig0019789:41061-41080 | Msa1376240:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | - | tig0019789:41062-41081 | Msa1376240:CDS | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | + | tig0019789:41114-41133 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | - | tig0019789:41114-41133 | Msa1376240:CDS | 30.0% |
| TTAACCAAGTAATCAACAAG+AGG | + | tig0019789:41153-41172 | None:intergenic | 30.0% | |
| GAGAAAAGAGCTTATTTACT+TGG | - | tig0019789:41210-41229 | Msa1376240:CDS | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | - | tig0019789:41271-41290 | Msa1376240:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | - | tig0019789:41386-41405 | Msa1376240:CDS | 30.0% |
| TTACTTCTTCAAAAGTGAGA+TGG | - | tig0019789:41587-41606 | Msa1376240:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | - | tig0019789:41588-41607 | Msa1376240:CDS | 30.0% | |
| ! | TCACTTATAGTTTGGAATCT+AGG | - | tig0019789:41649-41668 | Msa1376240:CDS | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | - | tig0019789:41706-41725 | Msa1376240:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | - | tig0019789:41777-41796 | Msa1376240:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | + | tig0019789:41838-41857 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | - | tig0019789:41839-41858 | Msa1376240:CDS | 30.0% | |
| ! | TGCGTGATGAAAGTATATTG+AGG | + | tig0019789:40423-40442 | None:intergenic | 35.0% |
| ! | TTGTTTGAAGTTTGGGGATT+TGG | + | tig0019789:40496-40515 | None:intergenic | 35.0% |
| ! | TTCGGGAAATTTGGAATCTT+GGG | + | tig0019789:40557-40576 | None:intergenic | 35.0% |
| ! | ATTCGGGAAATTTGGAATCT+TGG | + | tig0019789:40558-40577 | None:intergenic | 35.0% |
| CATCATCTTCGATTATCTCA+AGG | - | tig0019789:40642-40661 | Msa1376240:CDS | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | - | tig0019789:40649-40668 | Msa1376240:CDS | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | + | tig0019789:40790-40809 | None:intergenic | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | + | tig0019789:41006-41025 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | - | tig0019789:41009-41028 | Msa1376240:CDS | 35.0% |
| TAAGGATACTGTGTAACCAT+AGG | + | tig0019789:41096-41115 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | - | tig0019789:41146-41165 | Msa1376240:CDS | 35.0% |
| ATCCTAGCTAGAATCTTCTT+AGG | + | tig0019789:41186-41205 | None:intergenic | 35.0% | |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | - | tig0019789:41275-41294 | Msa1376240:CDS | 35.0% |
| GATTATTGGATTGCCTCTTA+AGG | - | tig0019789:41332-41351 | Msa1376240:CDS | 35.0% | |
| ! | AAACCGGTTGAGTTTTTACT+TGG | - | tig0019789:41474-41493 | Msa1376240:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | + | tig0019789:41480-41499 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | - | tig0019789:41479-41498 | Msa1376240:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | - | tig0019789:41589-41608 | Msa1376240:CDS | 35.0% | |
| AGATTTGAAGAGAGATTGCA+GGG | - | tig0019789:41750-41769 | Msa1376240:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | + | tig0019789:41790-41809 | None:intergenic | 35.0% | |
| AAAGTATAGGTCCTTCATTC+TGG | - | tig0019789:41790-41809 | Msa1376240:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | + | tig0019789:41837-41856 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | - | tig0019789:41845-41864 | Msa1376240:CDS | 35.0% | |
| ! | TGCGTGATGAAAGTATATTG+AGG | + | tig0019789:40423-40442 | None:intergenic | 35.0% |
| ! | TTGTTTGAAGTTTGGGGATT+TGG | + | tig0019789:40496-40515 | None:intergenic | 35.0% |
| ! | TTCGGGAAATTTGGAATCTT+GGG | + | tig0019789:40557-40576 | None:intergenic | 35.0% |
| ! | ATTCGGGAAATTTGGAATCT+TGG | + | tig0019789:40558-40577 | None:intergenic | 35.0% |
| CATCATCTTCGATTATCTCA+AGG | - | tig0019789:40642-40661 | Msa1376240:CDS | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | - | tig0019789:40649-40668 | Msa1376240:CDS | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | + | tig0019789:40790-40809 | None:intergenic | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | + | tig0019789:41006-41025 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | - | tig0019789:41009-41028 | Msa1376240:CDS | 35.0% |
| TAAGGATACTGTGTAACCAT+AGG | + | tig0019789:41096-41115 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | - | tig0019789:41146-41165 | Msa1376240:CDS | 35.0% |
| ATCCTAGCTAGAATCTTCTT+AGG | + | tig0019789:41186-41205 | None:intergenic | 35.0% | |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | - | tig0019789:41275-41294 | Msa1376240:CDS | 35.0% |
| GATTATTGGATTGCCTCTTA+AGG | - | tig0019789:41332-41351 | Msa1376240:CDS | 35.0% | |
| ! | AAACCGGTTGAGTTTTTACT+TGG | - | tig0019789:41474-41493 | Msa1376240:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | + | tig0019789:41480-41499 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | - | tig0019789:41479-41498 | Msa1376240:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | - | tig0019789:41589-41608 | Msa1376240:CDS | 35.0% | |
| AGATTTGAAGAGAGATTGCA+GGG | - | tig0019789:41750-41769 | Msa1376240:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | + | tig0019789:41790-41809 | None:intergenic | 35.0% | |
| AAAGTATAGGTCCTTCATTC+TGG | - | tig0019789:41790-41809 | Msa1376240:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | + | tig0019789:41837-41856 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | - | tig0019789:41845-41864 | Msa1376240:CDS | 35.0% | |
| CATCTCGTATTCGGGAAATT+TGG | + | tig0019789:40566-40585 | None:intergenic | 40.0% | |
| AACAGTAGGCATCTCGTATT+CGG | + | tig0019789:40575-40594 | None:intergenic | 40.0% | |
| CTTCGATTATCTCAAGGGTT+TGG | - | tig0019789:40648-40667 | Msa1376240:CDS | 40.0% | |
| TCCTGATGAATTGCAGGATT+TGG | - | tig0019789:40678-40697 | Msa1376240:CDS | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | + | tig0019789:40682-40701 | None:intergenic | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | - | tig0019789:40708-40727 | Msa1376240:CDS | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | - | tig0019789:40853-40872 | Msa1376240:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | + | tig0019789:40898-40917 | None:intergenic | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | - | tig0019789:41069-41088 | Msa1376240:CDS | 40.0% | |
| ! | TGCCTAAGAAGATTCTAGCT+AGG | - | tig0019789:41181-41200 | Msa1376240:CDS | 40.0% |
| ! | GAAGATTCTAGCTAGGATGT+TGG | - | tig0019789:41188-41207 | Msa1376240:CDS | 40.0% |
| AGAGGCAATCCAATAATCTG+CGG | + | tig0019789:41330-41349 | None:intergenic | 40.0% | |
| GAAGACAATTTCGCCTTAAG+AGG | + | tig0019789:41348-41367 | None:intergenic | 40.0% | |
| AAGCTTAAGATTGATCCGGA+AGG | - | tig0019789:41390-41409 | Msa1376240:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | - | tig0019789:41391-41410 | Msa1376240:CDS | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | - | tig0019789:41478-41497 | Msa1376240:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | + | tig0019789:41618-41637 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | - | tig0019789:41670-41689 | Msa1376240:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | + | tig0019789:41749-41768 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | - | tig0019789:41749-41768 | Msa1376240:CDS | 40.0% | |
| ATAGGTCCTTCATTCTGGAT+TGG | - | tig0019789:41795-41814 | Msa1376240:CDS | 40.0% | |
| CATCTCGTATTCGGGAAATT+TGG | + | tig0019789:40566-40585 | None:intergenic | 40.0% | |
| AACAGTAGGCATCTCGTATT+CGG | + | tig0019789:40575-40594 | None:intergenic | 40.0% | |
| CTTCGATTATCTCAAGGGTT+TGG | - | tig0019789:40648-40667 | Msa1376240:CDS | 40.0% | |
| TCCTGATGAATTGCAGGATT+TGG | - | tig0019789:40678-40697 | Msa1376240:CDS | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | + | tig0019789:40682-40701 | None:intergenic | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | - | tig0019789:40708-40727 | Msa1376240:CDS | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | - | tig0019789:40853-40872 | Msa1376240:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | + | tig0019789:40898-40917 | None:intergenic | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | - | tig0019789:41069-41088 | Msa1376240:CDS | 40.0% | |
| ! | TGCCTAAGAAGATTCTAGCT+AGG | - | tig0019789:41181-41200 | Msa1376240:CDS | 40.0% |
| ! | GAAGATTCTAGCTAGGATGT+TGG | - | tig0019789:41188-41207 | Msa1376240:CDS | 40.0% |
| AGAGGCAATCCAATAATCTG+CGG | + | tig0019789:41330-41349 | None:intergenic | 40.0% | |
| GAAGACAATTTCGCCTTAAG+AGG | + | tig0019789:41348-41367 | None:intergenic | 40.0% | |
| AAGCTTAAGATTGATCCGGA+AGG | - | tig0019789:41390-41409 | Msa1376240:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | - | tig0019789:41391-41410 | Msa1376240:CDS | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | - | tig0019789:41478-41497 | Msa1376240:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | + | tig0019789:41618-41637 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | - | tig0019789:41670-41689 | Msa1376240:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | + | tig0019789:41749-41768 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | - | tig0019789:41749-41768 | Msa1376240:CDS | 40.0% | |
| ATAGGTCCTTCATTCTGGAT+TGG | - | tig0019789:41795-41814 | Msa1376240:CDS | 40.0% | |
| ! | TGGGGATTTGGAAGTGCATT+TGG | + | tig0019789:40484-40503 | None:intergenic | 45.0% |
| ! | GGGAAATTTGGAATCTTGGG+TGG | + | tig0019789:40554-40573 | None:intergenic | 45.0% |
| ACAGTAGGCATCTCGTATTC+GGG | + | tig0019789:40574-40593 | None:intergenic | 45.0% | |
| ACGAGATGCCTACTGTTACA+TGG | - | tig0019789:40578-40597 | Msa1376240:CDS | 45.0% | |
| CGAGATGCCTACTGTTACAT+GGG | - | tig0019789:40579-40598 | Msa1376240:CDS | 45.0% | |
| GAGATGCCTACTGTTACATG+GGG | - | tig0019789:40580-40599 | Msa1376240:CDS | 45.0% | |
| ATGACACCCCATGTAACAGT+AGG | + | tig0019789:40589-40608 | None:intergenic | 45.0% | |
| !! | GTTACATGGGGTGTCATTCA+AGG | - | tig0019789:40592-40611 | Msa1376240:CDS | 45.0% |
| GCGAAACGAGTTTCTCTTTG+CGG | + | tig0019789:40618-40637 | None:intergenic | 45.0% | |
| GCAAAGAGAAACTCGTTTCG+CGG | - | tig0019789:40617-40636 | Msa1376240:CDS | 45.0% | |
| CAAAGAGAAACTCGTTTCGC+GGG | - | tig0019789:40618-40637 | Msa1376240:CDS | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | + | tig0019789:40709-40728 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | - | tig0019789:40707-40726 | Msa1376240:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | + | tig0019789:40716-40735 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | - | tig0019789:41077-41096 | Msa1376240:CDS | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | + | tig0019789:41081-41100 | None:intergenic | 45.0% | |
| GGATACTGAGCAATAACCGA+GGG | + | tig0019789:41309-41328 | None:intergenic | 45.0% | |
| GCTCAGTATCCGCAGATTAT+TGG | - | tig0019789:41318-41337 | Msa1376240:CDS | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | + | tig0019789:41441-41460 | None:intergenic | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | - | tig0019789:41611-41630 | Msa1376240:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | + | tig0019789:41681-41700 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | - | tig0019789:41683-41702 | Msa1376240:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | - | tig0019789:41684-41703 | Msa1376240:CDS | 45.0% | |
| !! | GTCCTTCATTCTGGATTGGT+GGG | - | tig0019789:41799-41818 | Msa1376240:CDS | 45.0% |
| TTCCCACCAATCCAGAATGA+AGG | + | tig0019789:41804-41823 | None:intergenic | 45.0% | |
| ! | TGGGGATTTGGAAGTGCATT+TGG | + | tig0019789:40484-40503 | None:intergenic | 45.0% |
| ! | GGGAAATTTGGAATCTTGGG+TGG | + | tig0019789:40554-40573 | None:intergenic | 45.0% |
| ACAGTAGGCATCTCGTATTC+GGG | + | tig0019789:40574-40593 | None:intergenic | 45.0% | |
| ACGAGATGCCTACTGTTACA+TGG | - | tig0019789:40578-40597 | Msa1376240:CDS | 45.0% | |
| CGAGATGCCTACTGTTACAT+GGG | - | tig0019789:40579-40598 | Msa1376240:CDS | 45.0% | |
| GAGATGCCTACTGTTACATG+GGG | - | tig0019789:40580-40599 | Msa1376240:CDS | 45.0% | |
| ATGACACCCCATGTAACAGT+AGG | + | tig0019789:40589-40608 | None:intergenic | 45.0% | |
| !! | GTTACATGGGGTGTCATTCA+AGG | - | tig0019789:40592-40611 | Msa1376240:CDS | 45.0% |
| GCGAAACGAGTTTCTCTTTG+CGG | + | tig0019789:40618-40637 | None:intergenic | 45.0% | |
| GCAAAGAGAAACTCGTTTCG+CGG | - | tig0019789:40617-40636 | Msa1376240:CDS | 45.0% | |
| CAAAGAGAAACTCGTTTCGC+GGG | - | tig0019789:40618-40637 | Msa1376240:CDS | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | + | tig0019789:40709-40728 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | - | tig0019789:40707-40726 | Msa1376240:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | + | tig0019789:40716-40735 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | - | tig0019789:41077-41096 | Msa1376240:CDS | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | + | tig0019789:41081-41100 | None:intergenic | 45.0% | |
| GGATACTGAGCAATAACCGA+GGG | + | tig0019789:41309-41328 | None:intergenic | 45.0% | |
| GCTCAGTATCCGCAGATTAT+TGG | - | tig0019789:41318-41337 | Msa1376240:CDS | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | + | tig0019789:41441-41460 | None:intergenic | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | - | tig0019789:41611-41630 | Msa1376240:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | + | tig0019789:41681-41700 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | - | tig0019789:41683-41702 | Msa1376240:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | - | tig0019789:41684-41703 | Msa1376240:CDS | 45.0% | |
| !! | GTCCTTCATTCTGGATTGGT+GGG | - | tig0019789:41799-41818 | Msa1376240:CDS | 45.0% |
| TTCCCACCAATCCAGAATGA+AGG | + | tig0019789:41804-41823 | None:intergenic | 45.0% | |
| GAGGAAGGAATGTTTGCCCT+CGG | - | tig0019789:41290-41309 | Msa1376240:CDS | 50.0% | |
| CGGATACTGAGCAATAACCG+AGG | + | tig0019789:41310-41329 | None:intergenic | 50.0% | |
| ATACTAGCCACATCCTGCGA+CGG | + | tig0019789:41510-41529 | None:intergenic | 50.0% | |
| GGTGATCAAGTGTCCTCAGT+TGG | - | tig0019789:41530-41549 | Msa1376240:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | - | tig0019789:41685-41704 | Msa1376240:CDS | 50.0% | |
| ! | GGTCCTTCATTCTGGATTGG+TGG | - | tig0019789:41798-41817 | Msa1376240:CDS | 50.0% |
| GGTGGGAAATTAGAGCTACC+CGG | - | tig0019789:41816-41835 | Msa1376240:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | - | tig0019789:41817-41836 | Msa1376240:CDS | 50.0% | |
| GAGGAAGGAATGTTTGCCCT+CGG | - | tig0019789:41290-41309 | Msa1376240:CDS | 50.0% | |
| CGGATACTGAGCAATAACCG+AGG | + | tig0019789:41310-41329 | None:intergenic | 50.0% | |
| ATACTAGCCACATCCTGCGA+CGG | + | tig0019789:41510-41529 | None:intergenic | 50.0% | |
| GGTGATCAAGTGTCCTCAGT+TGG | - | tig0019789:41530-41549 | Msa1376240:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | - | tig0019789:41685-41704 | Msa1376240:CDS | 50.0% | |
| ! | GGTCCTTCATTCTGGATTGG+TGG | - | tig0019789:41798-41817 | Msa1376240:CDS | 50.0% |
| GGTGGGAAATTAGAGCTACC+CGG | - | tig0019789:41816-41835 | Msa1376240:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | - | tig0019789:41817-41836 | Msa1376240:CDS | 50.0% | |
| TTGATCCGGAAGGGTTTGCG+AGG | - | tig0019789:41400-41419 | Msa1376240:CDS | 55.0% | |
| TGATCCGGAAGGGTTTGCGA+GGG | - | tig0019789:41401-41420 | Msa1376240:CDS | 55.0% | |
| GTCGCAGGATGTGGCTAGTA+TGG | - | tig0019789:41509-41528 | Msa1376240:CDS | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | + | tig0019789:41689-41708 | None:intergenic | 55.0% | |
| TTGATCCGGAAGGGTTTGCG+AGG | - | tig0019789:41400-41419 | Msa1376240:CDS | 55.0% | |
| TGATCCGGAAGGGTTTGCGA+GGG | - | tig0019789:41401-41420 | Msa1376240:CDS | 55.0% | |
| GTCGCAGGATGTGGCTAGTA+TGG | - | tig0019789:41509-41528 | Msa1376240:CDS | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | + | tig0019789:41689-41708 | None:intergenic | 55.0% | |
| ACCACCCTCGCAAACCCTTC+CGG | + | tig0019789:41408-41427 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAGAAGATGCCAC+AGG | - | tig0019789:41422-41441 | Msa1376240:CDS | 60.0% |
| GGTGGAGAAGATGCCACAGG+TGG | - | tig0019789:41425-41444 | Msa1376240:CDS | 60.0% | |
| TGGTAGGGCAATACCGTCGC+AGG | - | tig0019789:41494-41513 | Msa1376240:CDS | 60.0% | |
| GGCAATACCGTCGCAGGATG+TGG | - | tig0019789:41500-41519 | Msa1376240:CDS | 60.0% | |
| ACTCGCAGCGCAACCAACTG+AGG | + | tig0019789:41546-41565 | None:intergenic | 60.0% | |
| ACCACCCTCGCAAACCCTTC+CGG | + | tig0019789:41408-41427 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAGAAGATGCCAC+AGG | - | tig0019789:41422-41441 | Msa1376240:CDS | 60.0% |
| GGTGGAGAAGATGCCACAGG+TGG | - | tig0019789:41425-41444 | Msa1376240:CDS | 60.0% | |
| TGGTAGGGCAATACCGTCGC+AGG | - | tig0019789:41494-41513 | Msa1376240:CDS | 60.0% | |
| GGCAATACCGTCGCAGGATG+TGG | - | tig0019789:41500-41519 | Msa1376240:CDS | 60.0% | |
| ACTCGCAGCGCAACCAACTG+AGG | + | tig0019789:41546-41565 | None:intergenic | 60.0% | |
| TCCGGAAGGGTTTGCGAGGG+TGG | - | tig0019789:41404-41423 | Msa1376240:CDS | 65.0% | |
| GGAAGGGTTTGCGAGGGTGG+TGG | - | tig0019789:41407-41426 | Msa1376240:CDS | 65.0% | |
| TCCGGAAGGGTTTGCGAGGG+TGG | - | tig0019789:41404-41423 | Msa1376240:CDS | 65.0% | |
| GGAAGGGTTTGCGAGGGTGG+TGG | - | tig0019789:41407-41426 | Msa1376240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019789 | gene | 40400 | 41911 | 40400 | ID=Msa1376240;Name=Msa1376240 |
| tig0019789 | mRNA | 40400 | 41911 | 40400 | ID=Msa1376240-mRNA-1;Parent=Msa1376240;Name=Msa1376240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|503 |
| tig0019789 | exon | 40400 | 41911 | 40400 | ID=Msa1376240-mRNA-1:exon:5000;Parent=Msa1376240-mRNA-1 |
| tig0019789 | CDS | 40400 | 41911 | 40400 | ID=Msa1376240-mRNA-1:cds;Parent=Msa1376240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
