Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371700 | XP_013470448.1 | 97.813 | 503 | 9 | 2 | 1 | 503 | 1 | 501 | 0.0 | 983 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371700 | sp|Q9ZT96|MTEF4_ARATH | 53.435 | 393 | 183 | 0 | 74 | 466 | 112 | 504 | 9.16e-152 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371700 | A0A072VS35 | 97.813 | 503 | 9 | 2 | 1 | 503 | 1 | 501 | 0.0 | 983 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1371700 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1371700 | Msa1376240 | 0.938926 | 2.993378e-99 | -8.615850e-47 |
| Msa0648880 | Msa1371700 | 0.802187 | 6.318072e-49 | -8.615850e-47 |
| Msa1242230 | Msa1371700 | 0.805873 | 1.081886e-49 | -8.615850e-47 |
| Msa1322860 | Msa1371700 | 0.812236 | 4.693702e-51 | -8.615850e-47 |
| Msa0287650 | Msa1371700 | 0.807705 | 4.436046e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371700 | MtrunA17_Chr1g0212691 | 97.813 | 503 | 9 | 2 | 1 | 503 | 1 | 501 | 0.0 | 983 |
| Msa1371700 | MtrunA17_Chr8g0391881 | 86.869 | 396 | 19 | 3 | 34 | 429 | 12 | 374 | 0.0 | 670 |
| Msa1371700 | MtrunA17_Chr5g0428941 | 51.435 | 418 | 197 | 2 | 55 | 470 | 89 | 502 | 2.86e-151 | 442 |
| Msa1371700 | MtrunA17_Chr8g0391861 | 86.607 | 112 | 13 | 1 | 392 | 503 | 1 | 110 | 7.05e-53 | 175 |
| Msa1371700 | MtrunA17_Chr4g0034981 | 25.706 | 354 | 253 | 4 | 106 | 452 | 235 | 585 | 3.07e-35 | 139 |
| Msa1371700 | MtrunA17_Chr8g0391871 | 88.333 | 60 | 7 | 0 | 444 | 503 | 1 | 60 | 3.71e-29 | 109 |
| Msa1371700 | MtrunA17_Chr2g0294671 | 29.123 | 285 | 190 | 6 | 177 | 457 | 211 | 487 | 1.66e-28 | 118 |
| Msa1371700 | MtrunA17_Chr2g0294671 | 22.348 | 264 | 179 | 5 | 69 | 328 | 189 | 430 | 1.92e-12 | 69.3 |
| Msa1371700 | MtrunA17_Chr6g0448821 | 27.164 | 335 | 238 | 6 | 126 | 458 | 32 | 362 | 6.60e-28 | 114 |
| Msa1371700 | MtrunA17_Chr4g0043941 | 22.115 | 312 | 199 | 5 | 147 | 453 | 47 | 319 | 2.92e-25 | 106 |
| Msa1371700 | MtrunA17_Chr4g0043941 | 25.108 | 231 | 147 | 3 | 84 | 313 | 45 | 250 | 3.57e-17 | 82.8 |
| Msa1371700 | MtrunA17_Chr5g0445491 | 24.373 | 279 | 200 | 7 | 163 | 434 | 176 | 450 | 2.70e-19 | 90.9 |
| Msa1371700 | MtrunA17_Chr5g0445491 | 23.881 | 268 | 188 | 7 | 83 | 338 | 194 | 457 | 1.43e-15 | 79.3 |
| Msa1371700 | MtrunA17_Chr2g0304101 | 26.923 | 208 | 116 | 3 | 283 | 454 | 99 | 306 | 4.12e-16 | 79.3 |
| Msa1371700 | MtrunA17_Chr5g0417641 | 26.639 | 244 | 139 | 5 | 212 | 453 | 88 | 293 | 1.14e-14 | 74.7 |
| Msa1371700 | MtrunA17_Chr2g0311181 | 23.582 | 335 | 164 | 12 | 147 | 475 | 75 | 323 | 1.15e-14 | 75.1 |
| Msa1371700 | MtrunA17_Chr3g0127891 | 22.819 | 298 | 184 | 7 | 160 | 452 | 235 | 491 | 9.59e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371700 | AT2G44020.1 | 74.455 | 505 | 126 | 3 | 1 | 503 | 4 | 507 | 0.0 | 758 |
| Msa1371700 | AT4G02990.2 | 53.435 | 393 | 183 | 0 | 74 | 466 | 112 | 504 | 9.31e-153 | 447 |
| Msa1371700 | AT4G02990.1 | 53.435 | 393 | 183 | 0 | 74 | 466 | 112 | 504 | 9.31e-153 | 447 |
| Msa1371700 | AT2G21710.1 | 25.000 | 352 | 260 | 3 | 138 | 488 | 278 | 626 | 4.99e-39 | 150 |
| Msa1371700 | AT2G21710.1 | 26.070 | 257 | 176 | 5 | 68 | 313 | 272 | 525 | 1.31e-17 | 86.3 |
| Msa1371700 | AT1G78930.1 | 26.488 | 336 | 240 | 6 | 126 | 458 | 249 | 580 | 2.82e-31 | 127 |
| Msa1371700 | AT4G38160.4 | 25.912 | 274 | 194 | 4 | 189 | 456 | 54 | 324 | 4.52e-29 | 117 |
| Msa1371700 | AT4G38160.4 | 23.902 | 205 | 154 | 2 | 126 | 328 | 63 | 267 | 1.35e-15 | 78.6 |
| Msa1371700 | AT4G38160.1 | 25.912 | 274 | 194 | 4 | 189 | 456 | 54 | 324 | 4.52e-29 | 117 |
| Msa1371700 | AT4G38160.1 | 23.902 | 205 | 154 | 2 | 126 | 328 | 63 | 267 | 1.35e-15 | 78.6 |
| Msa1371700 | AT4G38160.2 | 25.912 | 274 | 194 | 4 | 189 | 456 | 54 | 324 | 9.45e-29 | 117 |
| Msa1371700 | AT4G38160.2 | 23.902 | 205 | 154 | 2 | 126 | 328 | 63 | 267 | 1.84e-15 | 78.6 |
| Msa1371700 | AT4G38160.3 | 25.912 | 274 | 194 | 4 | 189 | 456 | 54 | 324 | 1.22e-28 | 117 |
| Msa1371700 | AT4G38160.3 | 23.902 | 205 | 154 | 2 | 126 | 328 | 63 | 267 | 1.99e-15 | 78.6 |
| Msa1371700 | AT2G21710.2 | 23.929 | 280 | 211 | 2 | 138 | 416 | 278 | 556 | 4.79e-27 | 115 |
| Msa1371700 | AT2G21710.2 | 26.070 | 257 | 176 | 5 | 68 | 313 | 272 | 525 | 1.05e-17 | 86.7 |
| Msa1371700 | AT2G21710.3 | 23.741 | 278 | 210 | 2 | 138 | 414 | 278 | 554 | 4.29e-26 | 112 |
| Msa1371700 | AT2G21710.3 | 26.070 | 257 | 176 | 5 | 68 | 313 | 272 | 525 | 1.30e-17 | 86.3 |
| Msa1371700 | AT4G14605.2 | 25.130 | 386 | 268 | 9 | 75 | 453 | 97 | 468 | 9.71e-24 | 104 |
| Msa1371700 | AT4G14605.1 | 25.130 | 386 | 268 | 9 | 75 | 453 | 97 | 468 | 9.71e-24 | 104 |
| Msa1371700 | AT5G55580.2 | 26.484 | 219 | 154 | 4 | 219 | 432 | 119 | 335 | 1.40e-18 | 88.2 |
| Msa1371700 | AT5G55580.2 | 25.000 | 260 | 180 | 7 | 81 | 328 | 79 | 335 | 8.83e-16 | 79.7 |
| Msa1371700 | AT5G55580.2 | 23.853 | 218 | 160 | 3 | 145 | 360 | 117 | 330 | 3.91e-14 | 74.7 |
| Msa1371700 | AT5G55580.1 | 26.484 | 219 | 154 | 4 | 219 | 432 | 225 | 441 | 8.71e-18 | 86.7 |
| Msa1371700 | AT5G55580.1 | 25.000 | 260 | 180 | 7 | 81 | 328 | 185 | 441 | 1.10e-15 | 80.1 |
| Msa1371700 | AT5G55580.1 | 23.853 | 218 | 160 | 3 | 145 | 360 | 223 | 436 | 1.08e-13 | 73.9 |
| Msa1371700 | AT1G61970.2 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.85e-16 | 80.9 |
| Msa1371700 | AT1G61970.7 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.85e-16 | 80.9 |
| Msa1371700 | AT1G61970.6 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.85e-16 | 80.9 |
| Msa1371700 | AT1G61970.3 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.85e-16 | 80.9 |
| Msa1371700 | AT1G61970.5 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.85e-16 | 80.9 |
| Msa1371700 | AT1G61970.4 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.85e-16 | 80.9 |
| Msa1371700 | AT1G61970.1 | 24.100 | 361 | 251 | 8 | 115 | 464 | 58 | 406 | 3.85e-16 | 80.9 |
| Msa1371700 | AT5G54180.1 | 22.973 | 296 | 185 | 7 | 162 | 454 | 235 | 490 | 8.37e-15 | 77.4 |
| Msa1371700 | AT1G61980.3 | 24.118 | 340 | 235 | 10 | 138 | 464 | 81 | 410 | 1.07e-14 | 76.6 |
| Msa1371700 | AT1G61980.2 | 24.118 | 340 | 235 | 10 | 138 | 464 | 81 | 410 | 1.07e-14 | 76.6 |
| Msa1371700 | AT1G61980.1 | 24.118 | 340 | 235 | 10 | 138 | 464 | 81 | 410 | 1.07e-14 | 76.6 |
| Msa1371700 | AT2G34620.1 | 26.887 | 212 | 119 | 4 | 283 | 458 | 85 | 296 | 2.49e-13 | 71.2 |
| Msa1371700 | AT2G03050.1 | 29.317 | 249 | 151 | 9 | 219 | 456 | 38 | 272 | 9.14e-13 | 69.3 |
| Msa1371700 | AT2G03050.2 | 29.317 | 249 | 151 | 9 | 219 | 456 | 39 | 273 | 9.33e-13 | 69.3 |
| Msa1371700 | AT5G55580.3 | 25.000 | 172 | 127 | 2 | 145 | 314 | 223 | 394 | 2.46e-12 | 68.9 |
| Msa1371700 | AT5G55580.3 | 26.425 | 193 | 130 | 5 | 81 | 261 | 185 | 377 | 1.09e-11 | 67.0 |
| Msa1371700 | AT2G36000.2 | 23.506 | 251 | 169 | 8 | 219 | 460 | 79 | 315 | 3.15e-12 | 68.2 |
| Msa1371700 | AT2G36000.1 | 23.387 | 248 | 167 | 8 | 219 | 457 | 79 | 312 | 7.26e-12 | 67.0 |
| Msa1371700 | AT1G62110.1 | 22.139 | 402 | 222 | 10 | 141 | 464 | 58 | 446 | 6.77e-11 | 64.7 |
Find 117 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTATCCTTTGATTT+TGG | 0.075546 | tig0019249:-47758 | Msa1371700:CDS |
| GTTGAGTTTATTCAGAAATT+AGG | 0.154219 | tig0019249:-47799 | Msa1371700:CDS |
| GTTGATTACTTGGTTAATTT+AGG | 0.162887 | tig0019249:-47379 | Msa1371700:CDS |
| CCTAAAATTGTTTGAAGTTT+GGG | 0.180617 | tig0019249:+48035 | None:intergenic |
| GCTCAGTATCCGCAGATTAT+TGG | 0.210052 | tig0019249:-47217 | Msa1371700:CDS |
| TCCTAAAATTGTTTGAAGTT+TGG | 0.211802 | tig0019249:+48034 | None:intergenic |
| CATCTCGTATTCGGGAAATT+TGG | 0.226817 | tig0019249:+47972 | None:intergenic |
| TCCTGATGAATTGCAGGATT+TGG | 0.241747 | tig0019249:-47857 | Msa1371700:CDS |
| AAAGTATAGGTCCTTCATTC+TGG | 0.247502 | tig0019249:-46745 | Msa1371700:CDS |
| TTGATTACTTGGTTAATTTA+GGG | 0.247846 | tig0019249:-47378 | Msa1371700:CDS |
| TTGTTTGAAGTTTGGGGATT+TGG | 0.270604 | tig0019249:+48042 | None:intergenic |
| TCACTTATAGTTTGGAATCT+AGG | 0.287748 | tig0019249:-46886 | Msa1371700:CDS |
| AGAATACTTCACTTATAGTT+TGG | 0.295127 | tig0019249:-46894 | Msa1371700:CDS |
| CTTCGATTATCTCAAGGGTT+TGG | 0.298946 | tig0019249:-47887 | Msa1371700:CDS |
| GTTGATTGTTTGATTAGTTT+TGG | 0.307251 | tig0019249:-47271 | Msa1371700:CDS |
| CTCTTAAGCCTCTGGTATCT+AGG | 0.309752 | tig0019249:+46857 | None:intergenic |
| TTCGATTATCTCAAGGGTTT+GGG | 0.314201 | tig0019249:-47886 | Msa1371700:CDS |
| GGATAAAGTGTTCATTGAAT+TGG | 0.316271 | tig0019249:-46829 | Msa1371700:CDS |
| ATTCGGGAAATTTGGAATCT+TGG | 0.321586 | tig0019249:+47980 | None:intergenic |
| AACAGTAGGCATCTCGTATT+CGG | 0.325045 | tig0019249:+47963 | None:intergenic |
| TGGGGATTTGGAAGTGCATT+TGG | 0.329507 | tig0019249:+48054 | None:intergenic |
| TTGAGTTTATTCAGAAATTA+GGG | 0.329984 | tig0019249:-47798 | Msa1371700:CDS |
| AGCTTAAACCCTAAAAGTTC+AGG | 0.348375 | tig0019249:+47532 | None:intergenic |
| ATGTAGAGAAAGATGATATT+GGG | 0.358260 | tig0019249:-47573 | Msa1371700:CDS |
| AATTATTCCTGATGAATTGC+AGG | 0.358521 | tig0019249:-47863 | Msa1371700:CDS |
| CCTGTTATTAAGTTTCTTAG+AGG | 0.361016 | tig0019249:-47601 | Msa1371700:CDS |
| AAACTATAAGTGAAGTATTC+TGG | 0.362016 | tig0019249:+46896 | None:intergenic |
| AAAGCCTCTTGTTGATTACT+TGG | 0.364443 | tig0019249:-47389 | Msa1371700:CDS |
| TCAAAATGTGATTATGAAAC+CGG | 0.364444 | tig0019249:-47077 | Msa1371700:CDS |
| CTAATCAAACAATCAACATT+AGG | 0.365413 | tig0019249:+47277 | None:intergenic |
| ATCTGAAACTATATCATTCC+CGG | 0.367449 | tig0019249:+46700 | None:intergenic |
| CCTCTAAGAAACTTAATAAC+AGG | 0.368936 | tig0019249:+47601 | None:intergenic |
| TTCGGGAAATTTGGAATCTT+GGG | 0.373205 | tig0019249:+47981 | None:intergenic |
| GTTGCTTATCTTGTTAGTAT+TGG | 0.373295 | tig0019249:-47487 | Msa1371700:CDS |
| TTAGTATTGGTGTTAATCCT+AGG | 0.373470 | tig0019249:-47474 | Msa1371700:CDS |
| GAAGTGCATTTGGATTTAAT+TGG | 0.374790 | tig0019249:+48064 | None:intergenic |
| GATGTAGAGAAAGATGATAT+TGG | 0.374971 | tig0019249:-47574 | Msa1371700:CDS |
| TCCCCTTGCTCTTAAGCCTC+TGG | 0.375995 | tig0019249:+46849 | None:intergenic |
| GAAGACAATTTCGCCTTAAG+AGG | 0.388607 | tig0019249:+47190 | None:intergenic |
| GATTATTGGATTGCCTCTTA+AGG | 0.391397 | tig0019249:-47203 | Msa1371700:CDS |
| GAGATTTGAAGAGAGATTGC+AGG | 0.401297 | tig0019249:-46786 | Msa1371700:CDS |
| GTCGCAGGATGTGGCTAGTA+TGG | 0.403205 | tig0019249:-47026 | Msa1371700:CDS |
| TCCTAGGGATATTGGTCCTA+TGG | 0.421118 | tig0019249:-47458 | Msa1371700:CDS |
| ACAGTAGGCATCTCGTATTC+GGG | 0.424676 | tig0019249:+47964 | None:intergenic |
| CTCATGACTTCAACGGTTGA+AGG | 0.424949 | tig0019249:+47829 | None:intergenic |
| GAGAAAAGAGCTTATTTACT+TGG | 0.425844 | tig0019249:-47325 | Msa1371700:CDS |
| ACCACCCTCGCAAACCCTTC+CGG | 0.428125 | tig0019249:+47130 | None:intergenic |
| GAATGAAGGACCTATACTTT+CGG | 0.432637 | tig0019249:+46748 | None:intergenic |
| TATTCAGAAATTAGGGTTAA+CGG | 0.433903 | tig0019249:-47791 | Msa1371700:CDS |
| GCAATCTCTCTTCAAATCTC+TGG | 0.437449 | tig0019249:+46789 | None:intergenic |
| TCCGGAAGGGTTTGCGAGGG+TGG | 0.445823 | tig0019249:-47131 | Msa1371700:CDS |
| GGTGTTAATCCTAGGGATAT+TGG | 0.451217 | tig0019249:-47466 | Msa1371700:CDS |
| TATAGTTTCAGATGAGGAAG+AGG | 0.454451 | tig0019249:-46690 | Msa1371700:CDS |
| TACTTCTTCAAAAGTGAGAT+GGG | 0.459036 | tig0019249:-46947 | Msa1371700:CDS |
| GGAAGGGTTTGCGAGGGTGG+TGG | 0.459551 | tig0019249:-47128 | Msa1371700:CDS |
| CGAGATGCCTACTGTTACAT+GGG | 0.462699 | tig0019249:-47956 | Msa1371700:CDS |
| TCCAAATCCTGCAATTCATC+AGG | 0.465291 | tig0019249:+47856 | None:intergenic |
| GCGAAACGAGTTTCTCTTTG+CGG | 0.473966 | tig0019249:+47920 | None:intergenic |
| ATCCTAGCTAGAATCTTCTT+AGG | 0.491214 | tig0019249:+47352 | None:intergenic |
| GGGATTTCTAGGTCTAAACT+TGG | 0.492563 | tig0019249:-47682 | Msa1371700:CDS |
| CTAAAATTGTTTGAAGTTTG+GGG | 0.495684 | tig0019249:+48036 | None:intergenic |
| GTTACATGGGGTGTCATTCA+AGG | 0.496359 | tig0019249:-47943 | Msa1371700:CDS |
| TACCAGAGGCTTAAGAGCAA+GGG | 0.502139 | tig0019249:-46851 | Msa1371700:CDS |
| CATCATCTTCGATTATCTCA+AGG | 0.503798 | tig0019249:-47893 | Msa1371700:CDS |
| GGCAATACCGTCGCAGGATG+TGG | 0.504137 | tig0019249:-47035 | Msa1371700:CDS |
| TTTGAAGCTTAAGATTGATC+CGG | 0.506836 | tig0019249:-47149 | Msa1371700:CDS |
| TTACTTCTTCAAAAGTGAGA+TGG | 0.508844 | tig0019249:-46948 | Msa1371700:CDS |
| GGTCCTTCATTCTGGATTGG+TGG | 0.510705 | tig0019249:-46737 | Msa1371700:CDS |
| GTCCTTCATTCTGGATTGGT+GGG | 0.516545 | tig0019249:-46736 | Msa1371700:CDS |
| ATAGGTCCTTCATTCTGGAT+TGG | 0.517859 | tig0019249:-46740 | Msa1371700:CDS |
| TAGTATTGGTGTTAATCCTA+GGG | 0.522188 | tig0019249:-47473 | Msa1371700:CDS |
| ACGAGATGCCTACTGTTACA+TGG | 0.523419 | tig0019249:-47957 | Msa1371700:CDS |
| ATCATCTTCGATTATCTCAA+GGG | 0.534022 | tig0019249:-47892 | Msa1371700:CDS |
| ATTGTTCTGCTAAAGAGAAA+CGG | 0.538058 | tig0019249:+46637 | None:intergenic |
| TATATCGAAACCGAAAGTAT+AGG | 0.540273 | tig0019249:-46758 | Msa1371700:CDS |
| GAGGAAGGAATGTTTGCCCT+CGG | 0.544202 | tig0019249:-47245 | Msa1371700:CDS |
| AGCTTAAGATTGATCCGGAA+GGG | 0.556415 | tig0019249:-47144 | Msa1371700:CDS |
| TTCCCACCAATCCAGAATGA+AGG | 0.560953 | tig0019249:+46734 | None:intergenic |
| AGATTTGAAGAGAGATTGCA+GGG | 0.561148 | tig0019249:-46785 | Msa1371700:CDS |
| GGGAAATTTGGAATCTTGGG+TGG | 0.563247 | tig0019249:+47984 | None:intergenic |
| GCAAAGAGAAACTCGTTTCG+CGG | 0.565498 | tig0019249:-47918 | Msa1371700:CDS |
| ATACCAGAGGCTTAAGAGCA+AGG | 0.565715 | tig0019249:-46852 | Msa1371700:CDS |
| CTTCAACCGTTGAAGTCATG+AGG | 0.566630 | tig0019249:-47828 | Msa1371700:CDS |
| CAAAGAGAAACTCGTTTCGC+GGG | 0.570276 | tig0019249:-47917 | Msa1371700:CDS |
| GAAGATTCTAGCTAGGATGT+TGG | 0.572863 | tig0019249:-47347 | Msa1371700:CDS |
| ACACTAGCATGCAAAACTTG+TGG | 0.577739 | tig0019249:+47640 | None:intergenic |
| TGGTAGGGCAATACCGTCGC+AGG | 0.580954 | tig0019249:-47041 | Msa1371700:CDS |
| GAGACCTGTAAAAGAGCTTG+TGG | 0.581965 | tig0019249:-46924 | Msa1371700:CDS |
| ACGTTCCCTCATGACTTCAA+CGG | 0.586865 | tig0019249:+47822 | None:intergenic |
| TAAGGATACTGTGTAACCAT+AGG | 0.587849 | tig0019249:+47442 | None:intergenic |
| GGTGATCAAGTGTCCTCAGT+TGG | 0.594291 | tig0019249:-47005 | Msa1371700:CDS |
| ACACTACAACCCAAAATCAA+AGG | 0.594517 | tig0019249:+47748 | None:intergenic |
| ACCAGAGGCTTAAGAGCAAG+GGG | 0.605082 | tig0019249:-46850 | Msa1371700:CDS |
| TTAACCAAGTAATCAACAAG+AGG | 0.605793 | tig0019249:+47385 | None:intergenic |
| TCTGAAACTATATCATTCCC+GGG | 0.612098 | tig0019249:+46701 | None:intergenic |
| TTGATCCGGAAGGGTTTGCG+AGG | 0.614047 | tig0019249:-47135 | Msa1371700:CDS |
| GTGGGAAATTAGAGCTACCC+GGG | 0.615038 | tig0019249:-46718 | Msa1371700:CDS |
| ACTCGCAGCGCAACCAACTG+AGG | 0.617167 | tig0019249:+46992 | None:intergenic |
| GGTGGGAAATTAGAGCTACC+CGG | 0.618425 | tig0019249:-46719 | Msa1371700:CDS |
| TGCCTAAGAAGATTCTAGCT+AGG | 0.620780 | tig0019249:-47354 | Msa1371700:CDS |
| AAGCTTAAGATTGATCCGGA+AGG | 0.621599 | tig0019249:-47145 | Msa1371700:CDS |
| GGTGGTGGAGAAGATGCCAC+AGG | 0.628330 | tig0019249:-47113 | Msa1371700:CDS |
| TTCAACCGTTGAAGTCATGA+GGG | 0.641557 | tig0019249:-47827 | Msa1371700:CDS |
| ACCATAGGACCAATATCCCT+AGG | 0.641670 | tig0019249:+47457 | None:intergenic |
| ACTTCTTCAAAAGTGAGATG+GGG | 0.645282 | tig0019249:-46946 | Msa1371700:CDS |
| ATGACACCCCATGTAACAGT+AGG | 0.649004 | tig0019249:+47949 | None:intergenic |
| TGATGAAGACTAACCACCTG+TGG | 0.651476 | tig0019249:+47097 | None:intergenic |
| TGATCCGGAAGGGTTTGCGA+GGG | 0.652425 | tig0019249:-47134 | Msa1371700:CDS |
| GAATGATATAGTTTCAGATG+AGG | 0.656227 | tig0019249:-46696 | Msa1371700:CDS |
| TGCGTGATGAAAGTATATTG+AGG | 0.677283 | tig0019249:+48115 | None:intergenic |
| ATACTAGCCACATCCTGCGA+CGG | 0.678965 | tig0019249:+47028 | None:intergenic |
| GGTGGAGAAGATGCCACAGG+TGG | 0.679410 | tig0019249:-47110 | Msa1371700:CDS |
| AGAGGCAATCCAATAATCTG+CGG | 0.679844 | tig0019249:+47208 | None:intergenic |
| GGATTAAACCTAGATACCAG+AGG | 0.689589 | tig0019249:-46865 | Msa1371700:CDS |
| GGATACTGAGCAATAACCGA+GGG | 0.697015 | tig0019249:+47229 | None:intergenic |
| CGGATACTGAGCAATAACCG+AGG | 0.701830 | tig0019249:+47228 | None:intergenic |
| GAGATGCCTACTGTTACATG+GGG | 0.725465 | tig0019249:-47955 | Msa1371700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAGTTTATTCAGAAATTA+GGG | - | tig0019249:46983-47002 | Msa1371700:CDS | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | - | tig0019249:47078-47097 | Msa1371700:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | - | tig0019249:47079-47098 | Msa1371700:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | - | tig0019249:47241-47260 | Msa1371700:CDS | 20.0% |
| !! | TTGATTACTTGGTTAATTTA+GGG | - | tig0019249:47403-47422 | Msa1371700:CDS | 20.0% |
| !! | TTGAGTTTATTCAGAAATTA+GGG | - | tig0019249:46983-47002 | Msa1371700:CDS | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | - | tig0019249:47078-47097 | Msa1371700:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | - | tig0019249:47079-47098 | Msa1371700:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | - | tig0019249:47241-47260 | Msa1371700:CDS | 20.0% |
| !! | TTGATTACTTGGTTAATTTA+GGG | - | tig0019249:47403-47422 | Msa1371700:CDS | 20.0% |
| !! | CTAAAATTGTTTGAAGTTTG+GGG | + | tig0019249:46748-46767 | None:intergenic | 25.0% |
| !! | CCTAAAATTGTTTGAAGTTT+GGG | + | tig0019249:46749-46768 | None:intergenic | 25.0% |
| !! | TCCTAAAATTGTTTGAAGTT+TGG | + | tig0019249:46750-46769 | None:intergenic | 25.0% |
| !! | AAACTTCAAACAATTTTAGG+AGG | - | tig0019249:46749-46768 | Msa1371700:CDS | 25.0% |
| !!! | AACTTCAAACAATTTTAGGA+GGG | - | tig0019249:46750-46769 | Msa1371700:CDS | 25.0% |
| !! | GTTTTACTATTCAATCTCTA+TGG | - | tig0019249:46772-46791 | Msa1371700:CDS | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | - | tig0019249:46982-47001 | Msa1371700:CDS | 25.0% |
| ! | TATTCAGAAATTAGGGTTAA+CGG | - | tig0019249:46990-47009 | Msa1371700:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | - | tig0019249:47023-47042 | Msa1371700:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | - | tig0019249:47024-47043 | Msa1371700:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | - | tig0019249:47060-47079 | Msa1371700:CDS | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | - | tig0019249:47061-47080 | Msa1371700:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | + | tig0019249:47075-47094 | None:intergenic | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | - | tig0019249:47088-47107 | Msa1371700:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | - | tig0019249:47208-47227 | Msa1371700:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | - | tig0019249:47240-47259 | Msa1371700:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | - | tig0019249:47348-47367 | Msa1371700:CDS | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | - | tig0019249:47349-47368 | Msa1371700:CDS | 25.0% |
| ! | GTTGATTACTTGGTTAATTT+AGG | - | tig0019249:47402-47421 | Msa1371700:CDS | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | + | tig0019249:47507-47526 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | - | tig0019249:47510-47529 | Msa1371700:CDS | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | - | tig0019249:47704-47723 | Msa1371700:CDS | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | + | tig0019249:47888-47907 | None:intergenic | 25.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | - | tig0019249:47887-47906 | Msa1371700:CDS | 25.0% |
| !! | CTAAAATTGTTTGAAGTTTG+GGG | + | tig0019249:46748-46767 | None:intergenic | 25.0% |
| !! | CCTAAAATTGTTTGAAGTTT+GGG | + | tig0019249:46749-46768 | None:intergenic | 25.0% |
| !! | TCCTAAAATTGTTTGAAGTT+TGG | + | tig0019249:46750-46769 | None:intergenic | 25.0% |
| !! | AAACTTCAAACAATTTTAGG+AGG | - | tig0019249:46749-46768 | Msa1371700:CDS | 25.0% |
| !!! | AACTTCAAACAATTTTAGGA+GGG | - | tig0019249:46750-46769 | Msa1371700:CDS | 25.0% |
| !! | GTTTTACTATTCAATCTCTA+TGG | - | tig0019249:46772-46791 | Msa1371700:CDS | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | - | tig0019249:46982-47001 | Msa1371700:CDS | 25.0% |
| ! | TATTCAGAAATTAGGGTTAA+CGG | - | tig0019249:46990-47009 | Msa1371700:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | - | tig0019249:47023-47042 | Msa1371700:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | - | tig0019249:47024-47043 | Msa1371700:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | - | tig0019249:47060-47079 | Msa1371700:CDS | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | - | tig0019249:47061-47080 | Msa1371700:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | + | tig0019249:47075-47094 | None:intergenic | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | - | tig0019249:47088-47107 | Msa1371700:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | - | tig0019249:47208-47227 | Msa1371700:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | - | tig0019249:47240-47259 | Msa1371700:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | - | tig0019249:47348-47367 | Msa1371700:CDS | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | - | tig0019249:47349-47368 | Msa1371700:CDS | 25.0% |
| ! | GTTGATTACTTGGTTAATTT+AGG | - | tig0019249:47402-47421 | Msa1371700:CDS | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | + | tig0019249:47507-47526 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | - | tig0019249:47510-47529 | Msa1371700:CDS | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | - | tig0019249:47704-47723 | Msa1371700:CDS | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | + | tig0019249:47888-47907 | None:intergenic | 25.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | - | tig0019249:47887-47906 | Msa1371700:CDS | 25.0% |
| GAAGTGCATTTGGATTTAAT+TGG | + | tig0019249:46720-46739 | None:intergenic | 30.0% | |
| ! | CCCAAACTTCAAACAATTTT+AGG | - | tig0019249:46746-46765 | Msa1371700:CDS | 30.0% |
| ATCATCTTCGATTATCTCAA+GGG | - | tig0019249:46889-46908 | Msa1371700:CDS | 30.0% | |
| AATTATTCCTGATGAATTGC+AGG | - | tig0019249:46918-46937 | Msa1371700:CDS | 30.0% | |
| ! | CCTCTAAGAAACTTAATAAC+AGG | + | tig0019249:47183-47202 | None:intergenic | 30.0% |
| CCTGTTATTAAGTTTCTTAG+AGG | - | tig0019249:47180-47199 | Msa1371700:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | - | tig0019249:47207-47226 | Msa1371700:CDS | 30.0% | |
| GTTGCTTATCTTGTTAGTAT+TGG | - | tig0019249:47294-47313 | Msa1371700:CDS | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | - | tig0019249:47307-47326 | Msa1371700:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | - | tig0019249:47308-47327 | Msa1371700:CDS | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | + | tig0019249:47360-47379 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | - | tig0019249:47360-47379 | Msa1371700:CDS | 30.0% |
| TTAACCAAGTAATCAACAAG+AGG | + | tig0019249:47399-47418 | None:intergenic | 30.0% | |
| GAGAAAAGAGCTTATTTACT+TGG | - | tig0019249:47456-47475 | Msa1371700:CDS | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | - | tig0019249:47517-47536 | Msa1371700:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | - | tig0019249:47632-47651 | Msa1371700:CDS | 30.0% |
| TTACTTCTTCAAAAGTGAGA+TGG | - | tig0019249:47833-47852 | Msa1371700:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | - | tig0019249:47834-47853 | Msa1371700:CDS | 30.0% | |
| ! | TCACTTATAGTTTGGAATCT+AGG | - | tig0019249:47895-47914 | Msa1371700:CDS | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | - | tig0019249:47952-47971 | Msa1371700:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | - | tig0019249:48023-48042 | Msa1371700:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | + | tig0019249:48084-48103 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | - | tig0019249:48085-48104 | Msa1371700:CDS | 30.0% | |
| GAAGTGCATTTGGATTTAAT+TGG | + | tig0019249:46720-46739 | None:intergenic | 30.0% | |
| ! | CCCAAACTTCAAACAATTTT+AGG | - | tig0019249:46746-46765 | Msa1371700:CDS | 30.0% |
| ATCATCTTCGATTATCTCAA+GGG | - | tig0019249:46889-46908 | Msa1371700:CDS | 30.0% | |
| AATTATTCCTGATGAATTGC+AGG | - | tig0019249:46918-46937 | Msa1371700:CDS | 30.0% | |
| ! | CCTCTAAGAAACTTAATAAC+AGG | + | tig0019249:47183-47202 | None:intergenic | 30.0% |
| CCTGTTATTAAGTTTCTTAG+AGG | - | tig0019249:47180-47199 | Msa1371700:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | - | tig0019249:47207-47226 | Msa1371700:CDS | 30.0% | |
| GTTGCTTATCTTGTTAGTAT+TGG | - | tig0019249:47294-47313 | Msa1371700:CDS | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | - | tig0019249:47307-47326 | Msa1371700:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | - | tig0019249:47308-47327 | Msa1371700:CDS | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | + | tig0019249:47360-47379 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | - | tig0019249:47360-47379 | Msa1371700:CDS | 30.0% |
| TTAACCAAGTAATCAACAAG+AGG | + | tig0019249:47399-47418 | None:intergenic | 30.0% | |
| GAGAAAAGAGCTTATTTACT+TGG | - | tig0019249:47456-47475 | Msa1371700:CDS | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | - | tig0019249:47517-47536 | Msa1371700:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | - | tig0019249:47632-47651 | Msa1371700:CDS | 30.0% |
| TTACTTCTTCAAAAGTGAGA+TGG | - | tig0019249:47833-47852 | Msa1371700:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | - | tig0019249:47834-47853 | Msa1371700:CDS | 30.0% | |
| ! | TCACTTATAGTTTGGAATCT+AGG | - | tig0019249:47895-47914 | Msa1371700:CDS | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | - | tig0019249:47952-47971 | Msa1371700:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | - | tig0019249:48023-48042 | Msa1371700:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | + | tig0019249:48084-48103 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | - | tig0019249:48085-48104 | Msa1371700:CDS | 30.0% | |
| ! | TGCGTGATGAAAGTATATTG+AGG | + | tig0019249:46669-46688 | None:intergenic | 35.0% |
| ! | TTGTTTGAAGTTTGGGGATT+TGG | + | tig0019249:46742-46761 | None:intergenic | 35.0% |
| ! | TTCGGGAAATTTGGAATCTT+GGG | + | tig0019249:46803-46822 | None:intergenic | 35.0% |
| ! | ATTCGGGAAATTTGGAATCT+TGG | + | tig0019249:46804-46823 | None:intergenic | 35.0% |
| CATCATCTTCGATTATCTCA+AGG | - | tig0019249:46888-46907 | Msa1371700:CDS | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | - | tig0019249:46895-46914 | Msa1371700:CDS | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | + | tig0019249:47036-47055 | None:intergenic | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | + | tig0019249:47252-47271 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | - | tig0019249:47255-47274 | Msa1371700:CDS | 35.0% |
| TAAGGATACTGTGTAACCAT+AGG | + | tig0019249:47342-47361 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | - | tig0019249:47392-47411 | Msa1371700:CDS | 35.0% |
| ATCCTAGCTAGAATCTTCTT+AGG | + | tig0019249:47432-47451 | None:intergenic | 35.0% | |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | - | tig0019249:47521-47540 | Msa1371700:CDS | 35.0% |
| GATTATTGGATTGCCTCTTA+AGG | - | tig0019249:47578-47597 | Msa1371700:CDS | 35.0% | |
| ! | AAACCGGTTGAGTTTTTACT+TGG | - | tig0019249:47720-47739 | Msa1371700:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | + | tig0019249:47726-47745 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | - | tig0019249:47725-47744 | Msa1371700:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | - | tig0019249:47835-47854 | Msa1371700:CDS | 35.0% | |
| AGATTTGAAGAGAGATTGCA+GGG | - | tig0019249:47996-48015 | Msa1371700:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | + | tig0019249:48036-48055 | None:intergenic | 35.0% | |
| AAAGTATAGGTCCTTCATTC+TGG | - | tig0019249:48036-48055 | Msa1371700:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | + | tig0019249:48083-48102 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | - | tig0019249:48091-48110 | Msa1371700:CDS | 35.0% | |
| ! | TGCGTGATGAAAGTATATTG+AGG | + | tig0019249:46669-46688 | None:intergenic | 35.0% |
| ! | TTGTTTGAAGTTTGGGGATT+TGG | + | tig0019249:46742-46761 | None:intergenic | 35.0% |
| ! | TTCGGGAAATTTGGAATCTT+GGG | + | tig0019249:46803-46822 | None:intergenic | 35.0% |
| ! | ATTCGGGAAATTTGGAATCT+TGG | + | tig0019249:46804-46823 | None:intergenic | 35.0% |
| CATCATCTTCGATTATCTCA+AGG | - | tig0019249:46888-46907 | Msa1371700:CDS | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | - | tig0019249:46895-46914 | Msa1371700:CDS | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | + | tig0019249:47036-47055 | None:intergenic | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | + | tig0019249:47252-47271 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | - | tig0019249:47255-47274 | Msa1371700:CDS | 35.0% |
| TAAGGATACTGTGTAACCAT+AGG | + | tig0019249:47342-47361 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | - | tig0019249:47392-47411 | Msa1371700:CDS | 35.0% |
| ATCCTAGCTAGAATCTTCTT+AGG | + | tig0019249:47432-47451 | None:intergenic | 35.0% | |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | - | tig0019249:47521-47540 | Msa1371700:CDS | 35.0% |
| GATTATTGGATTGCCTCTTA+AGG | - | tig0019249:47578-47597 | Msa1371700:CDS | 35.0% | |
| ! | AAACCGGTTGAGTTTTTACT+TGG | - | tig0019249:47720-47739 | Msa1371700:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | + | tig0019249:47726-47745 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | - | tig0019249:47725-47744 | Msa1371700:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | - | tig0019249:47835-47854 | Msa1371700:CDS | 35.0% | |
| AGATTTGAAGAGAGATTGCA+GGG | - | tig0019249:47996-48015 | Msa1371700:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | + | tig0019249:48036-48055 | None:intergenic | 35.0% | |
| AAAGTATAGGTCCTTCATTC+TGG | - | tig0019249:48036-48055 | Msa1371700:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | + | tig0019249:48083-48102 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | - | tig0019249:48091-48110 | Msa1371700:CDS | 35.0% | |
| CATCTCGTATTCGGGAAATT+TGG | + | tig0019249:46812-46831 | None:intergenic | 40.0% | |
| AACAGTAGGCATCTCGTATT+CGG | + | tig0019249:46821-46840 | None:intergenic | 40.0% | |
| CTTCGATTATCTCAAGGGTT+TGG | - | tig0019249:46894-46913 | Msa1371700:CDS | 40.0% | |
| TCCTGATGAATTGCAGGATT+TGG | - | tig0019249:46924-46943 | Msa1371700:CDS | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | + | tig0019249:46928-46947 | None:intergenic | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | - | tig0019249:46954-46973 | Msa1371700:CDS | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | - | tig0019249:47099-47118 | Msa1371700:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | + | tig0019249:47144-47163 | None:intergenic | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | - | tig0019249:47315-47334 | Msa1371700:CDS | 40.0% | |
| ! | TGCCTAAGAAGATTCTAGCT+AGG | - | tig0019249:47427-47446 | Msa1371700:CDS | 40.0% |
| ! | GAAGATTCTAGCTAGGATGT+TGG | - | tig0019249:47434-47453 | Msa1371700:CDS | 40.0% |
| AGAGGCAATCCAATAATCTG+CGG | + | tig0019249:47576-47595 | None:intergenic | 40.0% | |
| GAAGACAATTTCGCCTTAAG+AGG | + | tig0019249:47594-47613 | None:intergenic | 40.0% | |
| AAGCTTAAGATTGATCCGGA+AGG | - | tig0019249:47636-47655 | Msa1371700:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | - | tig0019249:47637-47656 | Msa1371700:CDS | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | - | tig0019249:47724-47743 | Msa1371700:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | + | tig0019249:47864-47883 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | - | tig0019249:47916-47935 | Msa1371700:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | + | tig0019249:47995-48014 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | - | tig0019249:47995-48014 | Msa1371700:CDS | 40.0% | |
| ATAGGTCCTTCATTCTGGAT+TGG | - | tig0019249:48041-48060 | Msa1371700:CDS | 40.0% | |
| CATCTCGTATTCGGGAAATT+TGG | + | tig0019249:46812-46831 | None:intergenic | 40.0% | |
| AACAGTAGGCATCTCGTATT+CGG | + | tig0019249:46821-46840 | None:intergenic | 40.0% | |
| CTTCGATTATCTCAAGGGTT+TGG | - | tig0019249:46894-46913 | Msa1371700:CDS | 40.0% | |
| TCCTGATGAATTGCAGGATT+TGG | - | tig0019249:46924-46943 | Msa1371700:CDS | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | + | tig0019249:46928-46947 | None:intergenic | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | - | tig0019249:46954-46973 | Msa1371700:CDS | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | - | tig0019249:47099-47118 | Msa1371700:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | + | tig0019249:47144-47163 | None:intergenic | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | - | tig0019249:47315-47334 | Msa1371700:CDS | 40.0% | |
| ! | TGCCTAAGAAGATTCTAGCT+AGG | - | tig0019249:47427-47446 | Msa1371700:CDS | 40.0% |
| ! | GAAGATTCTAGCTAGGATGT+TGG | - | tig0019249:47434-47453 | Msa1371700:CDS | 40.0% |
| AGAGGCAATCCAATAATCTG+CGG | + | tig0019249:47576-47595 | None:intergenic | 40.0% | |
| GAAGACAATTTCGCCTTAAG+AGG | + | tig0019249:47594-47613 | None:intergenic | 40.0% | |
| AAGCTTAAGATTGATCCGGA+AGG | - | tig0019249:47636-47655 | Msa1371700:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | - | tig0019249:47637-47656 | Msa1371700:CDS | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | - | tig0019249:47724-47743 | Msa1371700:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | + | tig0019249:47864-47883 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | - | tig0019249:47916-47935 | Msa1371700:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | + | tig0019249:47995-48014 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | - | tig0019249:47995-48014 | Msa1371700:CDS | 40.0% | |
| ATAGGTCCTTCATTCTGGAT+TGG | - | tig0019249:48041-48060 | Msa1371700:CDS | 40.0% | |
| ! | TGGGGATTTGGAAGTGCATT+TGG | + | tig0019249:46730-46749 | None:intergenic | 45.0% |
| ! | GGGAAATTTGGAATCTTGGG+TGG | + | tig0019249:46800-46819 | None:intergenic | 45.0% |
| ACAGTAGGCATCTCGTATTC+GGG | + | tig0019249:46820-46839 | None:intergenic | 45.0% | |
| ACGAGATGCCTACTGTTACA+TGG | - | tig0019249:46824-46843 | Msa1371700:CDS | 45.0% | |
| CGAGATGCCTACTGTTACAT+GGG | - | tig0019249:46825-46844 | Msa1371700:CDS | 45.0% | |
| GAGATGCCTACTGTTACATG+GGG | - | tig0019249:46826-46845 | Msa1371700:CDS | 45.0% | |
| ATGACACCCCATGTAACAGT+AGG | + | tig0019249:46835-46854 | None:intergenic | 45.0% | |
| !! | GTTACATGGGGTGTCATTCA+AGG | - | tig0019249:46838-46857 | Msa1371700:CDS | 45.0% |
| GCGAAACGAGTTTCTCTTTG+CGG | + | tig0019249:46864-46883 | None:intergenic | 45.0% | |
| GCAAAGAGAAACTCGTTTCG+CGG | - | tig0019249:46863-46882 | Msa1371700:CDS | 45.0% | |
| CAAAGAGAAACTCGTTTCGC+GGG | - | tig0019249:46864-46883 | Msa1371700:CDS | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | + | tig0019249:46955-46974 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | - | tig0019249:46953-46972 | Msa1371700:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | + | tig0019249:46962-46981 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | - | tig0019249:47323-47342 | Msa1371700:CDS | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | + | tig0019249:47327-47346 | None:intergenic | 45.0% | |
| GGATACTGAGCAATAACCGA+GGG | + | tig0019249:47555-47574 | None:intergenic | 45.0% | |
| GCTCAGTATCCGCAGATTAT+TGG | - | tig0019249:47564-47583 | Msa1371700:CDS | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | + | tig0019249:47687-47706 | None:intergenic | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | - | tig0019249:47857-47876 | Msa1371700:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | + | tig0019249:47927-47946 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | - | tig0019249:47929-47948 | Msa1371700:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | - | tig0019249:47930-47949 | Msa1371700:CDS | 45.0% | |
| !! | GTCCTTCATTCTGGATTGGT+GGG | - | tig0019249:48045-48064 | Msa1371700:CDS | 45.0% |
| TTCCCACCAATCCAGAATGA+AGG | + | tig0019249:48050-48069 | None:intergenic | 45.0% | |
| ! | TGGGGATTTGGAAGTGCATT+TGG | + | tig0019249:46730-46749 | None:intergenic | 45.0% |
| ! | GGGAAATTTGGAATCTTGGG+TGG | + | tig0019249:46800-46819 | None:intergenic | 45.0% |
| ACAGTAGGCATCTCGTATTC+GGG | + | tig0019249:46820-46839 | None:intergenic | 45.0% | |
| ACGAGATGCCTACTGTTACA+TGG | - | tig0019249:46824-46843 | Msa1371700:CDS | 45.0% | |
| CGAGATGCCTACTGTTACAT+GGG | - | tig0019249:46825-46844 | Msa1371700:CDS | 45.0% | |
| GAGATGCCTACTGTTACATG+GGG | - | tig0019249:46826-46845 | Msa1371700:CDS | 45.0% | |
| ATGACACCCCATGTAACAGT+AGG | + | tig0019249:46835-46854 | None:intergenic | 45.0% | |
| !! | GTTACATGGGGTGTCATTCA+AGG | - | tig0019249:46838-46857 | Msa1371700:CDS | 45.0% |
| GCGAAACGAGTTTCTCTTTG+CGG | + | tig0019249:46864-46883 | None:intergenic | 45.0% | |
| GCAAAGAGAAACTCGTTTCG+CGG | - | tig0019249:46863-46882 | Msa1371700:CDS | 45.0% | |
| CAAAGAGAAACTCGTTTCGC+GGG | - | tig0019249:46864-46883 | Msa1371700:CDS | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | + | tig0019249:46955-46974 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | - | tig0019249:46953-46972 | Msa1371700:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | + | tig0019249:46962-46981 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | - | tig0019249:47323-47342 | Msa1371700:CDS | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | + | tig0019249:47327-47346 | None:intergenic | 45.0% | |
| GGATACTGAGCAATAACCGA+GGG | + | tig0019249:47555-47574 | None:intergenic | 45.0% | |
| GCTCAGTATCCGCAGATTAT+TGG | - | tig0019249:47564-47583 | Msa1371700:CDS | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | + | tig0019249:47687-47706 | None:intergenic | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | - | tig0019249:47857-47876 | Msa1371700:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | + | tig0019249:47927-47946 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | - | tig0019249:47929-47948 | Msa1371700:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | - | tig0019249:47930-47949 | Msa1371700:CDS | 45.0% | |
| !! | GTCCTTCATTCTGGATTGGT+GGG | - | tig0019249:48045-48064 | Msa1371700:CDS | 45.0% |
| TTCCCACCAATCCAGAATGA+AGG | + | tig0019249:48050-48069 | None:intergenic | 45.0% | |
| GAGGAAGGAATGTTTGCCCT+CGG | - | tig0019249:47536-47555 | Msa1371700:CDS | 50.0% | |
| CGGATACTGAGCAATAACCG+AGG | + | tig0019249:47556-47575 | None:intergenic | 50.0% | |
| ATACTAGCCACATCCTGCGA+CGG | + | tig0019249:47756-47775 | None:intergenic | 50.0% | |
| GGTGATCAAGTGTCCTCAGT+TGG | - | tig0019249:47776-47795 | Msa1371700:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | - | tig0019249:47931-47950 | Msa1371700:CDS | 50.0% | |
| ! | GGTCCTTCATTCTGGATTGG+TGG | - | tig0019249:48044-48063 | Msa1371700:CDS | 50.0% |
| GGTGGGAAATTAGAGCTACC+CGG | - | tig0019249:48062-48081 | Msa1371700:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | - | tig0019249:48063-48082 | Msa1371700:CDS | 50.0% | |
| GAGGAAGGAATGTTTGCCCT+CGG | - | tig0019249:47536-47555 | Msa1371700:CDS | 50.0% | |
| CGGATACTGAGCAATAACCG+AGG | + | tig0019249:47556-47575 | None:intergenic | 50.0% | |
| ATACTAGCCACATCCTGCGA+CGG | + | tig0019249:47756-47775 | None:intergenic | 50.0% | |
| GGTGATCAAGTGTCCTCAGT+TGG | - | tig0019249:47776-47795 | Msa1371700:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | - | tig0019249:47931-47950 | Msa1371700:CDS | 50.0% | |
| ! | GGTCCTTCATTCTGGATTGG+TGG | - | tig0019249:48044-48063 | Msa1371700:CDS | 50.0% |
| GGTGGGAAATTAGAGCTACC+CGG | - | tig0019249:48062-48081 | Msa1371700:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | - | tig0019249:48063-48082 | Msa1371700:CDS | 50.0% | |
| TTGATCCGGAAGGGTTTGCG+AGG | - | tig0019249:47646-47665 | Msa1371700:CDS | 55.0% | |
| TGATCCGGAAGGGTTTGCGA+GGG | - | tig0019249:47647-47666 | Msa1371700:CDS | 55.0% | |
| GTCGCAGGATGTGGCTAGTA+TGG | - | tig0019249:47755-47774 | Msa1371700:CDS | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | + | tig0019249:47935-47954 | None:intergenic | 55.0% | |
| TTGATCCGGAAGGGTTTGCG+AGG | - | tig0019249:47646-47665 | Msa1371700:CDS | 55.0% | |
| TGATCCGGAAGGGTTTGCGA+GGG | - | tig0019249:47647-47666 | Msa1371700:CDS | 55.0% | |
| GTCGCAGGATGTGGCTAGTA+TGG | - | tig0019249:47755-47774 | Msa1371700:CDS | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | + | tig0019249:47935-47954 | None:intergenic | 55.0% | |
| ACCACCCTCGCAAACCCTTC+CGG | + | tig0019249:47654-47673 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAGAAGATGCCAC+AGG | - | tig0019249:47668-47687 | Msa1371700:CDS | 60.0% |
| GGTGGAGAAGATGCCACAGG+TGG | - | tig0019249:47671-47690 | Msa1371700:CDS | 60.0% | |
| TGGTAGGGCAATACCGTCGC+AGG | - | tig0019249:47740-47759 | Msa1371700:CDS | 60.0% | |
| GGCAATACCGTCGCAGGATG+TGG | - | tig0019249:47746-47765 | Msa1371700:CDS | 60.0% | |
| ACTCGCAGCGCAACCAACTG+AGG | + | tig0019249:47792-47811 | None:intergenic | 60.0% | |
| ACCACCCTCGCAAACCCTTC+CGG | + | tig0019249:47654-47673 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAGAAGATGCCAC+AGG | - | tig0019249:47668-47687 | Msa1371700:CDS | 60.0% |
| GGTGGAGAAGATGCCACAGG+TGG | - | tig0019249:47671-47690 | Msa1371700:CDS | 60.0% | |
| TGGTAGGGCAATACCGTCGC+AGG | - | tig0019249:47740-47759 | Msa1371700:CDS | 60.0% | |
| GGCAATACCGTCGCAGGATG+TGG | - | tig0019249:47746-47765 | Msa1371700:CDS | 60.0% | |
| ACTCGCAGCGCAACCAACTG+AGG | + | tig0019249:47792-47811 | None:intergenic | 60.0% | |
| TCCGGAAGGGTTTGCGAGGG+TGG | - | tig0019249:47650-47669 | Msa1371700:CDS | 65.0% | |
| GGAAGGGTTTGCGAGGGTGG+TGG | - | tig0019249:47653-47672 | Msa1371700:CDS | 65.0% | |
| TCCGGAAGGGTTTGCGAGGG+TGG | - | tig0019249:47650-47669 | Msa1371700:CDS | 65.0% | |
| GGAAGGGTTTGCGAGGGTGG+TGG | - | tig0019249:47653-47672 | Msa1371700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019249 | gene | 46646 | 48157 | 46646 | ID=Msa1371700;Name=Msa1371700 |
| tig0019249 | mRNA | 46646 | 48157 | 46646 | ID=Msa1371700-mRNA-1;Parent=Msa1371700;Name=Msa1371700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|503 |
| tig0019249 | exon | 46646 | 48157 | 46646 | ID=Msa1371700-mRNA-1:exon:2390;Parent=Msa1371700-mRNA-1 |
| tig0019249 | CDS | 46646 | 48157 | 46646 | ID=Msa1371700-mRNA-1:cds;Parent=Msa1371700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
