Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376610 | XP_003604071.1 | 96.558 | 523 | 8 | 4 | 1 | 519 | 1 | 517 | 0.0 | 1017 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376610 | sp|O49621|MLO1_ARATH | 65.511 | 548 | 138 | 10 | 1 | 519 | 1 | 526 | 0.0 | 688 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376610 | G7J8L3 | 96.558 | 523 | 8 | 4 | 1 | 519 | 1 | 517 | 0.0 | 1017 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1365690 | Msa1376610 | 0.907005 | 8.076822e-81 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376610 | MtrunA17_Chr3g0145831 | 96.558 | 523 | 8 | 4 | 1 | 519 | 1 | 517 | 0.0 | 1017 |
Msa1376610 | MtrunA17_Chr8g0337941 | 68.208 | 519 | 138 | 10 | 14 | 518 | 14 | 519 | 0.0 | 687 |
Msa1376610 | MtrunA17_Chr8g0337931 | 64.016 | 503 | 156 | 8 | 30 | 518 | 15 | 506 | 0.0 | 635 |
Msa1376610 | MtrunA17_Chr2g0291441 | 54.889 | 450 | 179 | 7 | 8 | 454 | 2 | 430 | 6.21e-158 | 458 |
Msa1376610 | MtrunA17_Chr3g0144171 | 43.888 | 499 | 247 | 10 | 1 | 483 | 1 | 482 | 9.88e-134 | 399 |
Msa1376610 | MtrunA17_Chr5g0407381 | 41.767 | 498 | 265 | 7 | 3 | 495 | 19 | 496 | 1.18e-127 | 384 |
Msa1376610 | MtrunA17_Chr8g0370181 | 40.705 | 511 | 273 | 9 | 1 | 505 | 27 | 513 | 8.26e-127 | 382 |
Msa1376610 | MtrunA17_Chr6g0462051 | 37.833 | 526 | 297 | 9 | 5 | 519 | 2 | 508 | 3.99e-118 | 359 |
Msa1376610 | MtrunA17_Chr2g0326301 | 40.194 | 515 | 273 | 10 | 1 | 506 | 1 | 489 | 7.29e-118 | 359 |
Msa1376610 | MtrunA17_Chr2g0317801 | 40.506 | 474 | 246 | 10 | 5 | 467 | 2 | 450 | 3.49e-114 | 348 |
Msa1376610 | MtrunA17_Chr3g0144201 | 37.158 | 549 | 277 | 9 | 10 | 507 | 9 | 540 | 3.02e-111 | 342 |
Msa1376610 | MtrunA17_Chr4g0040611 | 36.047 | 516 | 294 | 10 | 10 | 519 | 5 | 490 | 2.55e-105 | 326 |
Msa1376610 | MtrunA17_Chr2g0277471 | 38.280 | 465 | 261 | 10 | 9 | 466 | 6 | 451 | 3.17e-89 | 284 |
Msa1376610 | MtrunA17_Chr5g0405641 | 33.920 | 398 | 237 | 11 | 6 | 393 | 4 | 385 | 4.54e-51 | 179 |
Msa1376610 | MtrunA17_Chr5g0405651 | 42.188 | 64 | 37 | 0 | 405 | 468 | 1 | 64 | 4.49e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1376610 | AT4G02600.2 | 65.511 | 548 | 138 | 10 | 1 | 519 | 1 | 526 | 0.0 | 688 |
Msa1376610 | AT4G02600.1 | 65.511 | 548 | 138 | 10 | 1 | 519 | 1 | 526 | 0.0 | 688 |
Msa1376610 | AT2G44110.2 | 58.008 | 512 | 186 | 8 | 1 | 509 | 1 | 486 | 0.0 | 595 |
Msa1376610 | AT2G44110.1 | 58.203 | 512 | 184 | 9 | 1 | 509 | 1 | 485 | 0.0 | 591 |
Msa1376610 | AT4G24250.1 | 54.772 | 482 | 189 | 8 | 13 | 482 | 8 | 472 | 1.52e-171 | 493 |
Msa1376610 | AT4G24250.2 | 55.529 | 416 | 161 | 7 | 10 | 418 | 5 | 403 | 3.31e-147 | 428 |
Msa1376610 | AT2G33670.1 | 44.589 | 462 | 237 | 6 | 14 | 475 | 17 | 459 | 5.36e-128 | 383 |
Msa1376610 | AT1G61560.1 | 39.306 | 519 | 300 | 8 | 10 | 519 | 6 | 518 | 9.69e-123 | 372 |
Msa1376610 | AT1G61560.4 | 39.539 | 521 | 296 | 10 | 10 | 519 | 6 | 518 | 8.27e-122 | 370 |
Msa1376610 | AT2G17480.1 | 43.016 | 451 | 235 | 8 | 14 | 459 | 41 | 474 | 1.88e-121 | 369 |
Msa1376610 | AT2G17430.1 | 41.387 | 476 | 255 | 7 | 2 | 477 | 24 | 475 | 6.29e-121 | 366 |
Msa1376610 | AT1G42560.1 | 43.982 | 457 | 239 | 6 | 14 | 467 | 16 | 458 | 6.76e-120 | 360 |
Msa1376610 | AT1G61560.10 | 41.150 | 452 | 248 | 7 | 10 | 449 | 6 | 451 | 2.95e-116 | 351 |
Msa1376610 | AT1G11310.1 | 39.808 | 520 | 293 | 9 | 10 | 518 | 6 | 516 | 1.19e-115 | 353 |
Msa1376610 | AT2G39200.1 | 39.506 | 486 | 281 | 6 | 10 | 490 | 4 | 481 | 5.28e-114 | 349 |
Msa1376610 | AT5G53760.2 | 40.447 | 492 | 261 | 10 | 3 | 482 | 7 | 478 | 1.44e-113 | 348 |
Msa1376610 | AT5G53760.1 | 40.447 | 492 | 261 | 10 | 3 | 482 | 7 | 478 | 1.44e-113 | 348 |
Msa1376610 | AT1G26700.1 | 39.130 | 506 | 295 | 8 | 6 | 509 | 4 | 498 | 7.10e-111 | 340 |
Msa1376610 | AT1G26700.2 | 39.130 | 506 | 295 | 8 | 6 | 509 | 4 | 498 | 7.10e-111 | 340 |
Msa1376610 | AT5G65970.1 | 40.217 | 460 | 244 | 8 | 3 | 459 | 25 | 456 | 9.69e-111 | 340 |
Msa1376610 | AT3G45290.1 | 38.596 | 456 | 259 | 6 | 13 | 467 | 18 | 453 | 5.41e-107 | 329 |
Msa1376610 | AT1G61560.7 | 40.144 | 416 | 236 | 6 | 10 | 418 | 6 | 415 | 1.58e-103 | 317 |
Msa1376610 | AT1G61560.9 | 40.144 | 416 | 236 | 6 | 10 | 418 | 6 | 415 | 1.58e-103 | 317 |
Msa1376610 | AT1G61560.6 | 40.887 | 406 | 225 | 7 | 10 | 408 | 6 | 403 | 1.02e-102 | 314 |
Msa1376610 | AT1G61560.8 | 40.887 | 406 | 225 | 7 | 10 | 408 | 6 | 403 | 1.02e-102 | 314 |
Msa1376610 | AT1G61560.5 | 40.887 | 406 | 225 | 7 | 10 | 408 | 6 | 403 | 1.02e-102 | 314 |
Msa1376610 | AT1G61560.2 | 37.879 | 462 | 272 | 8 | 67 | 519 | 1 | 456 | 1.68e-100 | 313 |
Msa1376610 | AT1G61560.3 | 37.879 | 462 | 272 | 8 | 67 | 519 | 1 | 456 | 1.68e-100 | 313 |
Msa1376610 | AT1G11310.3 | 38.877 | 463 | 263 | 9 | 67 | 518 | 1 | 454 | 9.81e-97 | 303 |
Msa1376610 | AT1G11310.2 | 40.095 | 419 | 235 | 6 | 10 | 418 | 6 | 418 | 1.91e-96 | 299 |
Msa1376610 | AT1G42560.2 | 42.895 | 373 | 196 | 6 | 14 | 383 | 16 | 374 | 1.96e-87 | 274 |
Msa1376610 | AT1G11000.1 | 37.975 | 474 | 249 | 10 | 9 | 466 | 6 | 450 | 2.10e-87 | 280 |
Msa1376610 | AT1G11000.3 | 37.975 | 474 | 249 | 10 | 9 | 466 | 6 | 450 | 2.10e-87 | 280 |
Msa1376610 | AT5G65970.2 | 39.096 | 376 | 190 | 8 | 3 | 371 | 25 | 368 | 8.68e-82 | 263 |
Msa1376610 | AT1G11000.2 | 37.972 | 424 | 224 | 10 | 9 | 419 | 6 | 403 | 5.00e-71 | 233 |
Find 143 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGTTGGCATACATATTTC+TGG | 0.151627 | tig0019825:-107595 | Msa1376610:CDS |
TCAACTCTTCTTTGATCTTC+TGG | 0.174477 | tig0019825:+109797 | None:intergenic |
CAAAGAAGAGTTGATGCTTT+TGG | 0.184648 | tig0019825:-109788 | Msa1376610:CDS |
ATGCTATCTCAAAAGCATTT+TGG | 0.206491 | tig0019825:+106432 | None:intergenic |
GCCATAAAATTGCTTGAAAA+AGG | 0.208333 | tig0019825:+108735 | None:intergenic |
ATGGTTGCAGTTGGTATCTT+TGG | 0.209055 | tig0019825:-108295 | Msa1376610:intron |
GGGTTATAGGGTATTTATTC+AGG | 0.269576 | tig0019825:-106054 | Msa1376610:intron |
CTTTGTAGGACATGCTGGTC+TGG | 0.275970 | tig0019825:-105513 | Msa1376610:three_prime_UTR |
CGGGAGCTGATGCCCTCTTC+TGG | 0.279234 | tig0019825:+105718 | None:intergenic |
TCACACAACATTACAAAATA+AGG | 0.289610 | tig0019825:+105596 | None:intergenic |
TGGATTTGACTCCTGTATAA+TGG | 0.294490 | tig0019825:-106234 | Msa1376610:CDS |
ATTAAGGTACTTACAATAAC+AGG | 0.304841 | tig0019825:+107560 | None:intergenic |
TGCAAGTGGGCATTGTTGGC+TGG | 0.318793 | tig0019825:-105860 | Msa1376610:CDS |
ATTGTTCCAAGGCTCGTTAT+TGG | 0.341091 | tig0019825:-106197 | Msa1376610:CDS |
AACCATCAGATAATCACTTT+TGG | 0.341472 | tig0019825:-106502 | Msa1376610:CDS |
AACAACCAAGTCACCTTCTA+TGG | 0.342321 | tig0019825:+106526 | None:intergenic |
CAGCTACTTCATGAGCTAGT+TGG | 0.351518 | tig0019825:+106561 | None:intergenic |
TTGTTCCAAGGCTCGTTATT+GGG | 0.352604 | tig0019825:-106196 | Msa1376610:intron |
GTTAATGTTATAAACGCAAT+AGG | 0.356028 | tig0019825:-105635 | Msa1376610:three_prime_UTR |
GAAGAAGAACCTCTTAAAAC+TGG | 0.362207 | tig0019825:-109577 | Msa1376610:CDS |
AATGAAGTAAATGCACAAAC+AGG | 0.366506 | tig0019825:+105270 | None:intergenic |
GAGCTTCGTAAAGTGACTTT+TGG | 0.367340 | tig0019825:+109821 | None:intergenic |
GTTACAGAAGTATTGTCTTC+GGG | 0.367463 | tig0019825:+105699 | None:intergenic |
AGAAATGAACGCAGCATTGA+TGG | 0.368050 | tig0019825:+105454 | None:intergenic |
TTTGCAAAATCACAGCGATA+TGG | 0.374052 | tig0019825:+105325 | None:intergenic |
TACACTTATCATCTGTCATA+TGG | 0.374885 | tig0019825:-105391 | Msa1376610:three_prime_UTR |
ACTTGTGAAAATTAAACTTT+GGG | 0.379514 | tig0019825:+108529 | None:intergenic |
AGCTACTTCATGAGCTAGTT+GGG | 0.384754 | tig0019825:+106562 | None:intergenic |
TACTTGTGAAAATTAAACTT+TGG | 0.386200 | tig0019825:+108528 | None:intergenic |
GGATTTGACTCCTGTATAAT+GGG | 0.399306 | tig0019825:-106233 | Msa1376610:CDS |
ACTGGGGAAGTATTACTATT+AGG | 0.400570 | tig0019825:+105350 | None:intergenic |
AGAATGAGTGGTGGAGGTGA+AGG | 0.410123 | tig0019825:-109976 | Msa1376610:CDS |
GGACATGCTGGTCTGGGTAT+AGG | 0.412054 | tig0019825:-105506 | Msa1376610:three_prime_UTR |
CATGTGCAAGTGGGCATTGT+TGG | 0.413610 | tig0019825:-105864 | Msa1376610:CDS |
TGGCGAAGCATTGTCTTTGT+AGG | 0.414966 | tig0019825:-105527 | Msa1376610:three_prime_UTR |
TCAAGCAAGTTGTCGGCATA+AGG | 0.417979 | tig0019825:-108479 | Msa1376610:CDS |
TTCTTGTTGTTAAATATCAA+TGG | 0.418291 | tig0019825:-108257 | Msa1376610:intron |
AGTTACAGAAGTATTGTCTT+CGG | 0.421254 | tig0019825:+105698 | None:intergenic |
TCGTATTCTCAGGTTACATA+TGG | 0.421389 | tig0019825:-106254 | Msa1376610:intron |
ATTAAGACTTGGCTTCATTA+CGG | 0.421485 | tig0019825:-108686 | Msa1376610:intron |
ACTTTCCGTGGGAACGAAGC+TGG | 0.425162 | tig0019825:-106597 | Msa1376610:CDS |
TTGGTATCTTTGGCTCTTTG+TGG | 0.431225 | tig0019825:-108285 | Msa1376610:CDS |
CCAACTGAGTATGCTTATCT+AGG | 0.433871 | tig0019825:-105662 | Msa1376610:exon |
GAAAAGCATGCAGCCATAGA+AGG | 0.433917 | tig0019825:-106539 | Msa1376610:CDS |
AGATGGGAAGTCACTTTAAG+AGG | 0.441814 | tig0019825:-105902 | Msa1376610:CDS |
AGGGTGTGGTGGCAGATCTT+AGG | 0.442821 | tig0019825:+105426 | None:intergenic |
GTGGAGCGTGTTCTTCACTA+TGG | 0.444422 | tig0019825:-109868 | Msa1376610:CDS |
GAGAACTTCCTTGGCTAGGC+TGG | 0.446072 | tig0019825:+105796 | None:intergenic |
CTTGCTTGAAATCATCTTCA+AGG | 0.448142 | tig0019825:+108493 | None:intergenic |
GGTAGTACTGGTAGTAGTAC+TGG | 0.448339 | tig0019825:-105762 | Msa1376610:CDS |
AGAGAGAGAATGAGTGGTGG+AGG | 0.449897 | tig0019825:-109982 | Msa1376610:exon |
ATGAGTGGTGGAGGTGAAGG+AGG | 0.453792 | tig0019825:-109973 | Msa1376610:CDS |
TTTGTAGGACATGCTGGTCT+GGG | 0.453952 | tig0019825:-105512 | Msa1376610:three_prime_UTR |
AAAGCTTCGACAGATAATAA+AGG | 0.455273 | tig0019825:+109435 | None:intergenic |
ACACCGACGTGGGTAGTTGC+CGG | 0.455609 | tig0019825:-109925 | Msa1376610:CDS |
GATGATTTCAAGCAAGTTGT+CGG | 0.456829 | tig0019825:-108486 | Msa1376610:CDS |
AACGCAATAGGATGCTTTGT+AGG | 0.461397 | tig0019825:-105623 | Msa1376610:three_prime_UTR |
TCAACAGCATGAATTTATCA+AGG | 0.469213 | tig0019825:-109075 | Msa1376610:CDS |
CATGAGTATGAGAACTTCCT+TGG | 0.473751 | tig0019825:+105787 | None:intergenic |
AGATACGTCAGTGGAAGCGC+TGG | 0.481697 | tig0019825:-109245 | Msa1376610:CDS |
GCAAGTGGGCATTGTTGGCT+GGG | 0.482752 | tig0019825:-105859 | Msa1376610:CDS |
TCTTTGTCCTCCAGTCTACA+TGG | 0.483314 | tig0019825:+109682 | None:intergenic |
CTTTGGGTTTGTCTTGCAGT+GGG | 0.484627 | tig0019825:+108545 | None:intergenic |
CATACTCATGAGGGTAGTAC+TGG | 0.487612 | tig0019825:-105774 | Msa1376610:CDS |
CATACTCAGTTGGACCCCTC+AGG | 0.496662 | tig0019825:+105672 | None:intergenic |
ATTGTCTTTGTAGGACATGC+TGG | 0.496691 | tig0019825:-105518 | Msa1376610:three_prime_UTR |
CATTGTTGGCTGGGCAGAGA+AGG | 0.507997 | tig0019825:-105850 | Msa1376610:CDS |
AACTGGTTTCTGCGGTCGCA+AGG | 0.509634 | tig0019825:-109560 | Msa1376610:intron |
CTCTGCTCTCATCGGTTGGT+TGG | 0.510427 | tig0019825:-109027 | Msa1376610:intron |
AATCACAGCGATATGGTGAC+TGG | 0.511740 | tig0019825:+105332 | None:intergenic |
AGTAGTACTGGAATTCAGCT+TGG | 0.515296 | tig0019825:-105750 | Msa1376610:CDS |
GGCAAAGACTCTGCTCTCAT+CGG | 0.516978 | tig0019825:-109035 | Msa1376610:CDS |
CGTCTTGCAATTCTACCAGC+TGG | 0.518487 | tig0019825:+109625 | None:intergenic |
ACGAACTTGACCCATTATAC+AGG | 0.519596 | tig0019825:+106223 | None:intergenic |
ACTTTGGGTTTGTCTTGCAG+TGG | 0.521242 | tig0019825:+108544 | None:intergenic |
TCACATGCTTCCATGTAGAC+TGG | 0.535010 | tig0019825:-109692 | Msa1376610:CDS |
AAGACTCTGCTCTCATCGGT+TGG | 0.545020 | tig0019825:-109031 | Msa1376610:CDS |
TGTTGAACATGAGTCAACTT+TGG | 0.546220 | tig0019825:+109092 | None:intergenic |
GTAGTACTGGAATTCAGCTT+GGG | 0.550167 | tig0019825:-105749 | Msa1376610:CDS |
AAGTTCGTTACATTGTTCCA+AGG | 0.552285 | tig0019825:-106208 | Msa1376610:CDS |
TAAGAGGTTCTTCTTCTGCA+AGG | 0.553608 | tig0019825:+109584 | None:intergenic |
CTTTGGGGTAGCTTAACCCA+TGG | 0.555130 | tig0019825:-105243 | Msa1376610:three_prime_UTR |
ATGCTCCAGCTTCGTTCCCA+CGG | 0.556685 | tig0019825:+106592 | None:intergenic |
GATTATGTCACATTAAGACT+TGG | 0.560197 | tig0019825:-108697 | Msa1376610:CDS |
TTGCTTGAAATCATCTTCAA+GGG | 0.563434 | tig0019825:+108494 | None:intergenic |
TGCAGCCATAGAAGGTGACT+TGG | 0.563591 | tig0019825:-106531 | Msa1376610:CDS |
ATCACAGCGATATGGTGACT+GGG | 0.566071 | tig0019825:+105333 | None:intergenic |
TAGTAACTAGTCAGAGGGTG+TGG | 0.569921 | tig0019825:+105412 | None:intergenic |
GTAGCTTGAAGTTATGCCCA+TGG | 0.570673 | tig0019825:+105226 | None:intergenic |
GATTGTTGCGATTTCACTTG+CGG | 0.578805 | tig0019825:-109890 | Msa1376610:CDS |
GTATGAGAACTTCCTTGGCT+AGG | 0.580640 | tig0019825:+105792 | None:intergenic |
ATTCAATGACCATGTGCAAG+TGG | 0.582074 | tig0019825:-105874 | Msa1376610:CDS |
CCTAGATAAGCATACTCAGT+TGG | 0.583411 | tig0019825:+105662 | None:intergenic |
AGCATGTGACGCAATACACC+AGG | 0.586001 | tig0019825:+109706 | None:intergenic |
CTGGTCTGGGTATAGGTATG+TGG | 0.586723 | tig0019825:-105499 | Msa1376610:three_prime_UTR |
AATTACCCAATAACGAGCCT+TGG | 0.587733 | tig0019825:+106191 | None:intergenic |
CAACAGCATGAATTTATCAA+GGG | 0.591378 | tig0019825:-109074 | Msa1376610:CDS |
TAACAACTGCGTAGAGTGGT+AGG | 0.592499 | tig0019825:+106012 | None:intergenic |
CTGGGAAGATTCTATTGCAA+AGG | 0.593005 | tig0019825:-109226 | Msa1376610:CDS |
ACTTCTGTAACTAAACCTGA+GGG | 0.596923 | tig0019825:-105687 | Msa1376610:CDS |
GCTGATGGCCAGCCTAGCCA+AGG | 0.603904 | tig0019825:-105804 | Msa1376610:CDS |
GATGGGAAGTCACTTTAAGA+GGG | 0.604640 | tig0019825:-105901 | Msa1376610:CDS |
TAGCTTGAAGTTATGCCCAT+GGG | 0.604707 | tig0019825:+105227 | None:intergenic |
GGAAGTTCTCATACTCATGA+GGG | 0.610453 | tig0019825:-105783 | Msa1376610:CDS |
AGTAAAAGAAGAACGACGGT+TGG | 0.611653 | tig0019825:-110030 | Msa1376610:five_prime_UTR |
TTTGGGGTAGCTTAACCCAT+GGG | 0.611762 | tig0019825:-105242 | Msa1376610:three_prime_UTR |
CCTCTTAAAACTGGTTTCTG+CGG | 0.613016 | tig0019825:-109568 | Msa1376610:CDS |
GATACGTCAGTGGAAGCGCT+GGG | 0.613910 | tig0019825:-109244 | Msa1376610:CDS |
TTCAATGACCATGTGCAAGT+GGG | 0.616207 | tig0019825:-105873 | Msa1376610:CDS |
GAGAATTATGATACTAACAA+AGG | 0.617402 | tig0019825:-109204 | Msa1376610:intron |
AGGAAGTTCTCATACTCATG+AGG | 0.617919 | tig0019825:-105784 | Msa1376610:CDS |
AAGAAAGCACTAAAAGCTGA+TGG | 0.617932 | tig0019825:-105819 | Msa1376610:CDS |
CAACAATGCCCACTTGCACA+TGG | 0.622950 | tig0019825:+105865 | None:intergenic |
TAACTAGTCAGAGGGTGTGG+TGG | 0.624133 | tig0019825:+105415 | None:intergenic |
AAGACAATGCTTCGCCACGC+TGG | 0.624136 | tig0019825:+105533 | None:intergenic |
AAGTGTAGTAACTAGTCAGA+GGG | 0.624877 | tig0019825:+105407 | None:intergenic |
TACTTCTGTAACTAAACCTG+AGG | 0.629767 | tig0019825:-105688 | Msa1376610:CDS |
CTTTGCCGAAACCAGAAAAG+CGG | 0.634483 | tig0019825:+109051 | None:intergenic |
ACCAGCTGGAAAAGAGAAAG+CGG | 0.639460 | tig0019825:+109639 | None:intergenic |
CACTTGAGTTCACACCGACG+TGG | 0.642618 | tig0019825:-109936 | Msa1376610:CDS |
ATGAAGTAAATGCACAAACA+GGG | 0.642673 | tig0019825:+105271 | None:intergenic |
AACAACTGCGTAGAGTGGTA+GGG | 0.646677 | tig0019825:+106013 | None:intergenic |
AACAATCACAGTGCATACGC+CGG | 0.646759 | tig0019825:+109906 | None:intergenic |
TAAGTGTAGTAACTAGTCAG+AGG | 0.653617 | tig0019825:+105406 | None:intergenic |
AACCAAAAGTGATTATCTGA+TGG | 0.656311 | tig0019825:+106500 | None:intergenic |
TGTGTAACAACTGCGTAGAG+TGG | 0.658879 | tig0019825:+106008 | None:intergenic |
GAGGTTCTTCTTCTGCAAGG+AGG | 0.660182 | tig0019825:+109587 | None:intergenic |
GCTACTCCACGGTTACACCA+TGG | 0.661652 | tig0019825:-105208 | None:intergenic |
ATTAAGAAGAGAACGATGTG+AGG | 0.663083 | tig0019825:+106470 | None:intergenic |
GAGCGTGTTCTTCACTATGG+AGG | 0.672633 | tig0019825:-109865 | Msa1376610:CDS |
ACTCTACGCAGTTGTTACAC+AGG | 0.675035 | tig0019825:-106006 | Msa1376610:intron |
CATAACTTCAAGCTACTCCA+CGG | 0.675292 | tig0019825:-105219 | Msa1376610:three_prime_UTR |
TGTTGCGATTTCACTTGCGG+TGG | 0.678387 | tig0019825:-109887 | Msa1376610:CDS |
TAATAATATAGATACGTCAG+TGG | 0.683998 | tig0019825:-109254 | Msa1376610:intron |
TCACAGCGATATGGTGACTG+GGG | 0.686278 | tig0019825:+105334 | None:intergenic |
CATGCTTCCATGTAGACTGG+AGG | 0.690856 | tig0019825:-109689 | Msa1376610:CDS |
ACTTGAGTTCACACCGACGT+GGG | 0.706980 | tig0019825:-109935 | Msa1376610:CDS |
AAGTAAATGCACAAACAGGG+AGG | 0.713853 | tig0019825:+105274 | None:intergenic |
GAACAGTAAAAGAAGAACGA+CGG | 0.720401 | tig0019825:-110034 | Msa1376610:five_prime_UTR |
TGAGAACGGAGAAAGTGACG+TGG | 0.720981 | tig0019825:+109373 | None:intergenic |
ATGTGACGCAATACACCAGG+CGG | 0.723088 | tig0019825:+109709 | None:intergenic |
CTTCTGTAACTAAACCTGAG+GGG | 0.738449 | tig0019825:-105686 | Msa1376610:CDS |
ACGCCGGCAACTACCCACGT+CGG | 0.774441 | tig0019825:+109922 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCTGTAAAAAAAAAAAAAAA+AGG | + | tig0019825:105794-105813 | None:intergenic | 10.0% |
!! | AAATAAATATATTGTTAATC+TGG | + | tig0019825:106401-106420 | None:intergenic | 10.0% |
!! | TGTTATTATGATTTATTTAT+TGG | + | tig0019825:106665-106684 | None:intergenic | 10.0% |
!!! | TATTTTTCTTTGTAAATTTA+TGG | + | tig0019825:107127-107146 | None:intergenic | 10.0% |
!! | ATAAATTTACAAAGAAAAAT+AGG | - | tig0019825:107126-107145 | Msa1376610:intron | 10.0% |
!! | ATGAAAATAAACAATAAAAA+AGG | + | tig0019825:107733-107752 | None:intergenic | 10.0% |
!!! | TTTTTTATTGTTTATTTTCA+TGG | - | tig0019825:107732-107751 | Msa1376610:intron | 10.0% |
!!! | CAGTTTTTTTTTTTTTTTTT+TGG | + | tig0019825:107934-107953 | None:intergenic | 10.0% |
!! | CAAAAAAAAAAAAAAAAAAC+TGG | - | tig0019825:107932-107951 | Msa1376610:intron | 10.0% |
!!! | TTTTTTTTTTTTACAGAACA+AGG | - | tig0019825:105797-105816 | Msa1376610:CDS | 15.0% |
!! | GTATAAAATATTAGGAAAAA+TGG | + | tig0019825:106489-106508 | None:intergenic | 15.0% |
!!! | TGAAAGAAGTATAAAATATT+AGG | + | tig0019825:106497-106516 | None:intergenic | 15.0% |
!!! | CAATTCTAAATATATTTTCA+TGG | - | tig0019825:106943-106962 | Msa1376610:intron | 15.0% |
!! | TTATAAGAAGAAACATAAAT+AGG | + | tig0019825:107355-107374 | None:intergenic | 15.0% |
!! | TAAACAATAATAAATGGTAT+AGG | + | tig0019825:107415-107434 | None:intergenic | 15.0% |
!! | CATATGTAAACAATAATAAA+TGG | + | tig0019825:107421-107440 | None:intergenic | 15.0% |
!!! | TATGATAAATTTTTGTGATT+GGG | - | tig0019825:107500-107519 | Msa1376610:intron | 15.0% |
!! | ATAAACAATAAAAAAGGAAA+AGG | + | tig0019825:107727-107746 | None:intergenic | 15.0% |
!! | ATGTGCAATAATAAGTTATA+AGG | + | tig0019825:106085-106104 | None:intergenic | 20.0% |
!! | TGAAAATGAATAATAATGTG+AGG | + | tig0019825:106297-106316 | None:intergenic | 20.0% |
!! | AAAAACAAGATTGAAAAACA+GGG | + | tig0019825:106328-106347 | None:intergenic | 20.0% |
!! | AAAAAACAAGATTGAAAAAC+AGG | + | tig0019825:106329-106348 | None:intergenic | 20.0% |
!! | TATAGTGGTAATTAAAACTA+GGG | + | tig0019825:106354-106373 | None:intergenic | 20.0% |
!! | ACTTGTGAAAATTAAACTTT+GGG | + | tig0019825:106731-106750 | None:intergenic | 20.0% |
!! | TACTTGTGAAAATTAAACTT+TGG | + | tig0019825:106732-106751 | None:intergenic | 20.0% |
!!! | TTTTTGACAAAATTAGTCTA+CGG | + | tig0019825:106813-106832 | None:intergenic | 20.0% |
!!! | TTCTTGTTGTTAAATATCAA+TGG | - | tig0019825:107000-107019 | Msa1376610:intron | 20.0% |
!! | TTAAAAACATAATGTGAGTA+TGG | - | tig0019825:107184-107203 | Msa1376610:intron | 20.0% |
!! | TAAAAACATAATGTGAGTAT+GGG | - | tig0019825:107185-107204 | Msa1376610:intron | 20.0% |
!! | TAACATTATCTGATCTAAAA+TGG | - | tig0019825:107372-107391 | Msa1376610:intron | 20.0% |
!! | TTTATTTAAACAACACTTTC+TGG | - | tig0019825:107477-107496 | Msa1376610:intron | 20.0% |
!!! | GTATGATAAATTTTTGTGAT+TGG | - | tig0019825:107499-107518 | Msa1376610:intron | 20.0% |
!!! | AAAAGGAAAAGGTTTTATTA+AGG | + | tig0019825:107716-107735 | None:intergenic | 20.0% |
!! | AAGTTCAATGAGTTAATTAT+CGG | + | tig0019825:108018-108037 | None:intergenic | 20.0% |
!! | AAGATAGTATACTATACTTA+GGG | + | tig0019825:108251-108270 | None:intergenic | 20.0% |
!! | AAAGATAGTATACTATACTT+AGG | + | tig0019825:108252-108271 | None:intergenic | 20.0% |
!!! | GAATGACATGTTATTTATAT+TGG | - | tig0019825:108345-108364 | Msa1376610:intron | 20.0% |
!!! | ATTTACTTCATTTTCACTTT+GGG | - | tig0019825:109998-110017 | Msa1376610:five_prime_UTR | 20.0% |
!!! | ACTTTTGGTCTTTACTTTTA+AGG | + | tig0019825:105424-105443 | None:intergenic | 25.0% |
! | TAATAATATAGATACGTCAG+TGG | - | tig0019825:106003-106022 | Msa1376610:intron | 25.0% |
! | GAGAATTATGATACTAACAA+AGG | - | tig0019825:106053-106072 | Msa1376610:intron | 25.0% |
! | GTATAGTGGTAATTAAAACT+AGG | + | tig0019825:106355-106374 | None:intergenic | 25.0% |
! | TGTATAAAAGAACTGTATAG+TGG | + | tig0019825:106369-106388 | None:intergenic | 25.0% |
!!! | TCCTTTTTCAAGCAATTTTA+TGG | - | tig0019825:106521-106540 | Msa1376610:CDS | 25.0% |
! | AGATCATTTGACAACAAATA+TGG | + | tig0019825:106612-106631 | None:intergenic | 25.0% |
! | CAAATGATCTCTCAATTAAT+TGG | - | tig0019825:106622-106641 | Msa1376610:intron | 25.0% |
!!! | CAATTAATTGGCTTTTTATC+TGG | - | tig0019825:106634-106653 | Msa1376610:intron | 25.0% |
! | ACAACAAAGAAATATACGAA+AGG | + | tig0019825:106689-106708 | None:intergenic | 25.0% |
!! | AATTTCTCTCTCTATTGTTT+TGG | + | tig0019825:107166-107185 | None:intergenic | 25.0% |
! | ATTTCAGTTCATCACTTAAT+TGG | - | tig0019825:107275-107294 | Msa1376610:intron | 25.0% |
!! | ATTAAGGTACTTACAATAAC+AGG | + | tig0019825:107700-107719 | None:intergenic | 25.0% |
! | AAATTAAGACATGAGAGATT+TGG | + | tig0019825:107782-107801 | None:intergenic | 25.0% |
!! | TCATGTCTTAATTTTGTGAA+AGG | - | tig0019825:107788-107807 | Msa1376610:intron | 25.0% |
!! | CATGTCTTAATTTTGTGAAA+GGG | - | tig0019825:107789-107808 | Msa1376610:intron | 25.0% |
! | AGTATACTATACTAGTGTAA+GGG | + | tig0019825:107906-107925 | None:intergenic | 25.0% |
! | AAGTATACTATACTAGTGTA+AGG | + | tig0019825:107907-107926 | None:intergenic | 25.0% |
! | AAAACTGGTATAGTATAGTT+AGG | - | tig0019825:107947-107966 | Msa1376610:intron | 25.0% |
! | AAACTGGTATAGTATAGTTA+GGG | - | tig0019825:107948-107967 | Msa1376610:intron | 25.0% |
! | GATAATTAACTCATTGAACT+TGG | - | tig0019825:108017-108036 | Msa1376610:intron | 25.0% |
!! | GACATGTTATTTATATTGGA+TGG | - | tig0019825:108349-108368 | Msa1376610:intron | 25.0% |
! | CCAAGGGTAATAATAATAAT+TGG | + | tig0019825:108405-108424 | None:intergenic | 25.0% |
! | CCAATTATTATTATTACCCT+TGG | - | tig0019825:108402-108421 | Msa1376610:intron | 25.0% |
! | ATTATTATTACCCTTGGTTA+TGG | - | tig0019825:108408-108427 | Msa1376610:intron | 25.0% |
!! | TTTTCTATAACCATAACCAA+GGG | + | tig0019825:108421-108440 | None:intergenic | 25.0% |
! | GAAACAATAACTGATAGAAA+GGG | + | tig0019825:108467-108486 | None:intergenic | 25.0% |
! | AGAAACAATAACTGATAGAA+AGG | + | tig0019825:108468-108487 | None:intergenic | 25.0% |
! | AAAACATGTCTGTGAAAATA+AGG | + | tig0019825:108497-108516 | None:intergenic | 25.0% |
!!! | ATAATCACTTTTGGTTTCAT+CGG | - | tig0019825:108764-108783 | Msa1376610:intron | 25.0% |
!!! | TTGAGATAGCATTTTTTTTC+TGG | - | tig0019825:108836-108855 | Msa1376610:intron | 25.0% |
!!! | TAGCATTTTTTTTCTGGATA+TGG | - | tig0019825:108842-108861 | Msa1376610:intron | 25.0% |
!!! | AGCATTTTTTTTCTGGATAT+GGG | - | tig0019825:108843-108862 | Msa1376610:intron | 25.0% |
!!! | ATATGGGTAAGCAAATTTTT+TGG | - | tig0019825:108859-108878 | Msa1376610:intron | 25.0% |
! | GAAAAGAAGAACAAGTAAAA+TGG | + | tig0019825:108912-108931 | None:intergenic | 25.0% |
! | GTTAATGTTATAAACGCAAT+AGG | - | tig0019825:109622-109641 | Msa1376610:CDS | 25.0% |
! | TCACACAACATTACAAAATA+AGG | + | tig0019825:109664-109683 | None:intergenic | 25.0% |
!! | CATTTACTTCATTTTCACTT+TGG | - | tig0019825:109997-110016 | Msa1376610:five_prime_UTR | 25.0% |
!! | TTTACTTCATTTTCACTTTG+GGG | - | tig0019825:109999-110018 | Msa1376610:five_prime_UTR | 25.0% |
!!! | AAAGAAGAGTTGATGCTTTT+GGG | - | tig0019825:105470-105489 | Msa1376610:three_prime_UTR | 30.0% |
AGAACAAACAGATCAATGAA+TGG | + | tig0019825:105768-105787 | None:intergenic | 30.0% | |
AAAGCTTCGACAGATAATAA+AGG | + | tig0019825:105825-105844 | None:intergenic | 30.0% | |
CAAGAACAAAAATGAAGATG+TGG | + | tig0019825:105857-105876 | None:intergenic | 30.0% | |
TCAACAGCATGAATTTATCA+AGG | - | tig0019825:106182-106201 | Msa1376610:intron | 30.0% | |
CAACAGCATGAATTTATCAA+GGG | - | tig0019825:106183-106202 | Msa1376610:intron | 30.0% | |
GGAAAAGTTAAAGAAAAGCA+AGG | + | tig0019825:106468-106487 | None:intergenic | 30.0% | |
GCCATAAAATTGCTTGAAAA+AGG | + | tig0019825:106525-106544 | None:intergenic | 30.0% | |
GATTATGTCACATTAAGACT+TGG | - | tig0019825:106560-106579 | Msa1376610:CDS | 30.0% | |
ATTAAGACTTGGCTTCATTA+CGG | - | tig0019825:106571-106590 | Msa1376610:CDS | 30.0% | |
TTGCTTGAAATCATCTTCAA+GGG | + | tig0019825:106766-106785 | None:intergenic | 30.0% | |
TCTCAGATATACATCAGTTT+AGG | - | tig0019825:106860-106879 | Msa1376610:intron | 30.0% | |
TTATGCAATGACATGAACAA+AGG | + | tig0019825:106902-106921 | None:intergenic | 30.0% | |
! | TATATTTTCATGGTTGCAGT+TGG | - | tig0019825:106953-106972 | Msa1376610:intron | 30.0% |
ATTTATGGTTGTCACACAAA+TGG | + | tig0019825:107112-107131 | None:intergenic | 30.0% | |
!! | AAGAAAAATAGGTATCGACA+CGG | - | tig0019825:107137-107156 | Msa1376610:intron | 30.0% |
GAAGAAACATAAATAGGTTC+TGG | + | tig0019825:107349-107368 | None:intergenic | 30.0% | |
TATAGGAATACCAACAACAA+TGG | + | tig0019825:107398-107417 | None:intergenic | 30.0% | |
CCTTGAACACAAAACTAAAT+TGG | + | tig0019825:107552-107571 | None:intergenic | 30.0% | |
!!! | CCAATTTAGTTTTGTGTTCA+AGG | - | tig0019825:107549-107568 | Msa1376610:intron | 30.0% |
! | CTTAATTTTGTGAAAGGGAT+AGG | - | tig0019825:107794-107813 | Msa1376610:intron | 30.0% |
!!! | CTTTTTTTTTAGCTCGAACT+CGG | + | tig0019825:108143-108162 | None:intergenic | 30.0% |
ATGTTGTAAACTAATGGAGT+GGG | + | tig0019825:108317-108336 | None:intergenic | 30.0% | |
AGTCAGATGTTGTAAACTAA+TGG | + | tig0019825:108323-108342 | None:intergenic | 30.0% | |
! | CTTTTCTATAACCATAACCA+AGG | + | tig0019825:108422-108441 | None:intergenic | 30.0% |
AGGGACAAGAAAAAAAATCA+AGG | + | tig0019825:108580-108599 | None:intergenic | 30.0% | |
AAACTGAGAAACAAAAAAGC+AGG | + | tig0019825:108616-108635 | None:intergenic | 30.0% | |
GAAAGTAAAAGCTGAAAGAA+CGG | + | tig0019825:108646-108665 | None:intergenic | 30.0% | |
! | AACCATCAGATAATCACTTT+TGG | - | tig0019825:108755-108774 | Msa1376610:intron | 30.0% |
AACCAAAAGTGATTATCTGA+TGG | + | tig0019825:108760-108779 | None:intergenic | 30.0% | |
!!! | ATGCTATCTCAAAAGCATTT+TGG | + | tig0019825:108828-108847 | None:intergenic | 30.0% |
AGAAGAACAAGTAAAATGGT+TGG | + | tig0019825:108908-108927 | None:intergenic | 30.0% | |
! | TTCTTCTTTTCGTTTCGAAA+GGG | - | tig0019825:108921-108940 | Msa1376610:intron | 30.0% |
AACAAGAGGAAAGATAAATG+AGG | + | tig0019825:109165-109184 | None:intergenic | 30.0% | |
!! | AGTTACAGAAGTATTGTCTT+CGG | + | tig0019825:109562-109581 | None:intergenic | 30.0% |
TACACTTATCATCTGTCATA+TGG | - | tig0019825:109866-109885 | Msa1376610:CDS | 30.0% | |
ATGAAGTAAATGCACAAACA+GGG | + | tig0019825:109989-110008 | None:intergenic | 30.0% | |
AATGAAGTAAATGCACAAAC+AGG | + | tig0019825:109990-110009 | None:intergenic | 30.0% | |
GAACAGTAAAAGAAGAACGA+CGG | - | tig0019825:105223-105242 | Msa1376610:three_prime_UTR | 35.0% | |
TCAACTCTTCTTTGATCTTC+TGG | + | tig0019825:105463-105482 | None:intergenic | 35.0% | |
!!! | CAAAGAAGAGTTGATGCTTT+TGG | - | tig0019825:105469-105488 | Msa1376610:three_prime_UTR | 35.0% |
GAAGAAGAACCTCTTAAAAC+TGG | - | tig0019825:105680-105699 | Msa1376610:CDS | 35.0% | |
GAACAAAAATGAAGATGTGG+AGG | + | tig0019825:105854-105873 | None:intergenic | 35.0% | |
TCCAAAAACAACAGTGAGAA+CGG | + | tig0019825:105901-105920 | None:intergenic | 35.0% | |
TGTTGAACATGAGTCAACTT+TGG | + | tig0019825:106168-106187 | None:intergenic | 35.0% | |
CTTGCTTGAAATCATCTTCA+AGG | + | tig0019825:106767-106786 | None:intergenic | 35.0% | |
GATGATTTCAAGCAAGTTGT+CGG | - | tig0019825:106771-106790 | Msa1376610:intron | 35.0% | |
CAGATATACATCAGTTTAGG+TGG | - | tig0019825:106863-106882 | Msa1376610:intron | 35.0% | |
! | TCACTTAATTGGCTCTTACA+TGG | - | tig0019825:107286-107305 | Msa1376610:intron | 35.0% |
! | CACTTAATTGGCTCTTACAT+GGG | - | tig0019825:107287-107306 | Msa1376610:intron | 35.0% |
CTTATGTAAAGTGACAAGTC+TGG | - | tig0019825:107320-107339 | Msa1376610:intron | 35.0% | |
! | TCTAAAATGGCCATTGTTGT+TGG | - | tig0019825:107385-107404 | Msa1376610:intron | 35.0% |
AGCTGAGTAAACTTAATGTG+TGG | + | tig0019825:107758-107777 | None:intergenic | 35.0% | |
! | GTACTGTTGAGATCATTTTC+TGG | + | tig0019825:107884-107903 | None:intergenic | 35.0% |
!!! | GAACTATTTTCGAGTAGGTT+CGG | + | tig0019825:107985-108004 | None:intergenic | 35.0% |
CAACTCAAGTTCAACTCATT+TGG | + | tig0019825:108051-108070 | None:intergenic | 35.0% | |
CGACTCGATAAGATTTGAAT+CGG | + | tig0019825:108195-108214 | None:intergenic | 35.0% | |
TAGTATACTATACTTAGGGC+TGG | + | tig0019825:108247-108266 | None:intergenic | 35.0% | |
GATGTTGTAAACTAATGGAG+TGG | + | tig0019825:108318-108337 | None:intergenic | 35.0% | |
ACAAAAAAGCAGGAGATACA+AGG | + | tig0019825:108606-108625 | None:intergenic | 35.0% | |
! | TTTCAGCTTTTACTTTCCGT+GGG | - | tig0019825:108649-108668 | Msa1376610:intron | 35.0% |
ATTAAGAAGAGAACGATGTG+AGG | + | tig0019825:108790-108809 | None:intergenic | 35.0% | |
!!! | TCTCAAAAGCATTTTGGAAG+AGG | + | tig0019825:108822-108841 | None:intergenic | 35.0% |
! | GTTCTTCTTTTCGTTTCGAA+AGG | - | tig0019825:108920-108939 | Msa1376610:intron | 35.0% |
TCGTATTCTCAGGTTACATA+TGG | - | tig0019825:109003-109022 | Msa1376610:intron | 35.0% | |
TGGATTTGACTCCTGTATAA+TGG | - | tig0019825:109023-109042 | Msa1376610:intron | 35.0% | |
GGATTTGACTCCTGTATAAT+GGG | - | tig0019825:109024-109043 | Msa1376610:intron | 35.0% | |
AAGTTCGTTACATTGTTCCA+AGG | - | tig0019825:109049-109068 | Msa1376610:CDS | 35.0% | |
! | GGGTTATAGGGTATTTATTC+AGG | - | tig0019825:109203-109222 | Msa1376610:intron | 35.0% |
AAGTTTGAATAGCTGTGCAA+AGG | + | tig0019825:109279-109298 | None:intergenic | 35.0% | |
CATCTACAGTGTGAGAATAA+CGG | + | tig0019825:109340-109359 | None:intergenic | 35.0% | |
GTTATTCTCACACTGTAGAT+GGG | - | tig0019825:109339-109358 | Msa1376610:intron | 35.0% | |
!! | AAGAAAGCACTAAAAGCTGA+TGG | - | tig0019825:109438-109457 | Msa1376610:CDS | 35.0% |
!! | GTTACAGAAGTATTGTCTTC+GGG | + | tig0019825:109561-109580 | None:intergenic | 35.0% |
TACTTCTGTAACTAAACCTG+AGG | - | tig0019825:109569-109588 | Msa1376610:CDS | 35.0% | |
ACTTCTGTAACTAAACCTGA+GGG | - | tig0019825:109570-109589 | Msa1376610:CDS | 35.0% | |
AAGTGTAGTAACTAGTCAGA+GGG | + | tig0019825:109853-109872 | None:intergenic | 35.0% | |
TAAGTGTAGTAACTAGTCAG+AGG | + | tig0019825:109854-109873 | None:intergenic | 35.0% | |
!! | ACTGGGGAAGTATTACTATT+AGG | + | tig0019825:109910-109929 | None:intergenic | 35.0% |
TTTGCAAAATCACAGCGATA+TGG | + | tig0019825:109935-109954 | None:intergenic | 35.0% | |
AGTAAAAGAAGAACGACGGT+TGG | - | tig0019825:105227-105246 | Msa1376610:three_prime_UTR | 40.0% | |
GATTGTTGCGATTTCACTTG+CGG | - | tig0019825:105367-105386 | Msa1376610:three_prime_UTR | 40.0% | |
! | GAGCTTCGTAAAGTGACTTT+TGG | + | tig0019825:105439-105458 | None:intergenic | 40.0% |
ACAAAAATATGTGTTCCGCC+TGG | - | tig0019825:105533-105552 | Msa1376610:three_prime_UTR | 40.0% | |
TAAGAGGTTCTTCTTCTGCA+AGG | + | tig0019825:105676-105695 | None:intergenic | 40.0% | |
! | CCTCTTAAAACTGGTTTCTG+CGG | - | tig0019825:105689-105708 | Msa1376610:CDS | 40.0% |
!!! | TCCGTTCTCACTGTTGTTTT+TGG | - | tig0019825:105897-105916 | Msa1376610:CDS | 40.0% |
!!! | GTTCTCACTGTTGTTTTTGG+AGG | - | tig0019825:105900-105919 | Msa1376610:CDS | 40.0% |
CTGGGAAGATTCTATTGCAA+AGG | - | tig0019825:106031-106050 | Msa1376610:CDS | 40.0% | |
! | ATGGTTGCAGTTGGTATCTT+TGG | - | tig0019825:106962-106981 | Msa1376610:intron | 40.0% |
!! | TTGGTATCTTTGGCTCTTTG+TGG | - | tig0019825:106972-106991 | Msa1376610:intron | 40.0% |
GATGTCTGCTTTACTCTTTC+AGG | - | tig0019825:107643-107662 | Msa1376610:intron | 40.0% | |
! | TCTGCTTTACTCTTTCAGGT+TGG | - | tig0019825:107647-107666 | Msa1376610:intron | 40.0% |
! | CAGGTTGGCATACATATTTC+TGG | - | tig0019825:107662-107681 | Msa1376610:intron | 40.0% |
TGGTATAGTATAGTTAGGGC+TGG | - | tig0019825:107952-107971 | Msa1376610:intron | 40.0% | |
!!! | GTCTCGAACTATTTTCGAGT+AGG | + | tig0019825:107990-108009 | None:intergenic | 40.0% |
! | CTTTCAGCTTTTACTTTCCG+TGG | - | tig0019825:108648-108667 | Msa1376610:intron | 40.0% |
AGCTACTTCATGAGCTAGTT+GGG | + | tig0019825:108698-108717 | None:intergenic | 40.0% | |
AACAACCAAGTCACCTTCTA+TGG | + | tig0019825:108734-108753 | None:intergenic | 40.0% | |
ATCTATCAGCTCGTATTCTC+AGG | - | tig0019825:108993-109012 | Msa1376610:intron | 40.0% | |
ACGAACTTGACCCATTATAC+AGG | + | tig0019825:109037-109056 | None:intergenic | 40.0% | |
ATTGTTCCAAGGCTCGTTAT+TGG | - | tig0019825:109060-109079 | Msa1376610:CDS | 40.0% | |
TTGTTCCAAGGCTCGTTATT+GGG | - | tig0019825:109061-109080 | Msa1376610:CDS | 40.0% | |
AATTACCCAATAACGAGCCT+TGG | + | tig0019825:109069-109088 | None:intergenic | 40.0% | |
ATGGAGGGACAAAAAACAAG+AGG | + | tig0019825:109179-109198 | None:intergenic | 40.0% | |
!!! | TGTTTTTTGTCCCTCCATGT+TGG | - | tig0019825:109181-109200 | Msa1376610:intron | 40.0% |
!!! | GTTTTTTGTCCCTCCATGTT+GGG | - | tig0019825:109182-109201 | Msa1376610:intron | 40.0% |
!!! | TTTTTTGTCCCTCCATGTTG+GGG | - | tig0019825:109183-109202 | Msa1376610:intron | 40.0% |
AATACCCTATAACCCCAACA+TGG | + | tig0019825:109198-109217 | None:intergenic | 40.0% | |
CGTTATTCTCACACTGTAGA+TGG | - | tig0019825:109338-109357 | Msa1376610:intron | 40.0% | |
! | AGATGGGAAGTCACTTTAAG+AGG | - | tig0019825:109355-109374 | Msa1376610:CDS | 40.0% |
! | GATGGGAAGTCACTTTAAGA+GGG | - | tig0019825:109356-109375 | Msa1376610:CDS | 40.0% |
ATTCAATGACCATGTGCAAG+TGG | - | tig0019825:109383-109402 | Msa1376610:CDS | 40.0% | |
TTCAATGACCATGTGCAAGT+GGG | - | tig0019825:109384-109403 | Msa1376610:CDS | 40.0% | |
CATGAGTATGAGAACTTCCT+TGG | + | tig0019825:109473-109492 | None:intergenic | 40.0% | |
AGGAAGTTCTCATACTCATG+AGG | - | tig0019825:109473-109492 | Msa1376610:intron | 40.0% | |
GGAAGTTCTCATACTCATGA+GGG | - | tig0019825:109474-109493 | Msa1376610:intron | 40.0% | |
! | AGTAGTACTGGAATTCAGCT+TGG | - | tig0019825:109507-109526 | Msa1376610:intron | 40.0% |
! | GTAGTACTGGAATTCAGCTT+GGG | - | tig0019825:109508-109527 | Msa1376610:intron | 40.0% |
CTTCTGTAACTAAACCTGAG+GGG | - | tig0019825:109571-109590 | Msa1376610:CDS | 40.0% | |
CCTAGATAAGCATACTCAGT+TGG | + | tig0019825:109598-109617 | None:intergenic | 40.0% | |
CCAACTGAGTATGCTTATCT+AGG | - | tig0019825:109595-109614 | Msa1376610:CDS | 40.0% | |
AACGCAATAGGATGCTTTGT+AGG | - | tig0019825:109634-109653 | Msa1376610:CDS | 40.0% | |
!!! | TCTTATTTTCTTTGCCAGCG+TGG | - | tig0019825:109710-109729 | Msa1376610:CDS | 40.0% |
ATTGTCTTTGTAGGACATGC+TGG | - | tig0019825:109739-109758 | Msa1376610:CDS | 40.0% | |
! | AGAAATGAACGCAGCATTGA+TGG | + | tig0019825:109806-109825 | None:intergenic | 40.0% |
! | TATGGTTTTTGCTCTGTGCA+TGG | - | tig0019825:109884-109903 | Msa1376610:CDS | 40.0% |
AAGTAAATGCACAAACAGGG+AGG | + | tig0019825:109986-110005 | None:intergenic | 40.0% | |
TAGCTTGAAGTTATGCCCAT+GGG | + | tig0019825:110033-110052 | None:intergenic | 40.0% | |
CATAACTTCAAGCTACTCCA+CGG | - | tig0019825:110038-110057 | Msa1376610:five_prime_UTR | 40.0% | |
AGAGAGAGAGAGAGAATGAG+TGG | - | tig0019825:105269-105288 | Msa1376610:three_prime_UTR | 45.0% | |
AACAATCACAGTGCATACGC+CGG | + | tig0019825:105354-105373 | None:intergenic | 45.0% | |
TCACATGCTTCCATGTAGAC+TGG | - | tig0019825:105565-105584 | Msa1376610:three_prime_UTR | 45.0% | |
TCTTTGTCCTCCAGTCTACA+TGG | + | tig0019825:105578-105597 | None:intergenic | 45.0% | |
ACCAGCTGGAAAAGAGAAAG+CGG | + | tig0019825:105621-105640 | None:intergenic | 45.0% | |
!!! | CCGCAGAAACCAGTTTTAAG+AGG | + | tig0019825:105692-105711 | None:intergenic | 45.0% |
!!! | TTTATCAAGGGCCGCTTTTC+TGG | - | tig0019825:106195-106214 | Msa1376610:intron | 45.0% |
CTTTGCCGAAACCAGAAAAG+CGG | + | tig0019825:106209-106228 | None:intergenic | 45.0% | |
GACTTGGCTTCATTACGGTA+AGG | - | tig0019825:106576-106595 | Msa1376610:CDS | 45.0% | |
! | CTTTGGGTTTGTCTTGCAGT+GGG | + | tig0019825:106715-106734 | None:intergenic | 45.0% |
! | ACTTTGGGTTTGTCTTGCAG+TGG | + | tig0019825:106716-106735 | None:intergenic | 45.0% |
TCAAGCAAGTTGTCGGCATA+AGG | - | tig0019825:106778-106797 | Msa1376610:intron | 45.0% | |
GAAAGGGCAACACTAGCTAA+AGG | + | tig0019825:108451-108470 | None:intergenic | 45.0% | |
CAGCTACTTCATGAGCTAGT+TGG | + | tig0019825:108699-108718 | None:intergenic | 45.0% | |
! | GAAAAGCATGCAGCCATAGA+AGG | - | tig0019825:108718-108737 | Msa1376610:CDS | 45.0% |
! | GTTTCGAAAGGGCATACTGT+GGG | - | tig0019825:108932-108951 | Msa1376610:intron | 45.0% |
! | TTTCGAAAGGGCATACTGTG+GGG | - | tig0019825:108933-108952 | Msa1376610:intron | 45.0% |
AACAACTGCGTAGAGTGGTA+GGG | + | tig0019825:109247-109266 | None:intergenic | 45.0% | |
TAACAACTGCGTAGAGTGGT+AGG | + | tig0019825:109248-109267 | None:intergenic | 45.0% | |
TGTGTAACAACTGCGTAGAG+TGG | + | tig0019825:109252-109271 | None:intergenic | 45.0% | |
ACTCTACGCAGTTGTTACAC+AGG | - | tig0019825:109251-109270 | Msa1376610:intron | 45.0% | |
GTATGAGAACTTCCTTGGCT+AGG | + | tig0019825:109468-109487 | None:intergenic | 45.0% | |
CATACTCATGAGGGTAGTAC+TGG | - | tig0019825:109483-109502 | Msa1376610:intron | 45.0% | |
!! | GGTAGTACTGGTAGTAGTAC+TGG | - | tig0019825:109495-109514 | Msa1376610:intron | 45.0% |
! | TTGGGTCAGTTTTCCAGAAG+AGG | - | tig0019825:109526-109545 | Msa1376610:intron | 45.0% |
! | TGGGTCAGTTTTCCAGAAGA+GGG | - | tig0019825:109527-109546 | Msa1376610:intron | 45.0% |
!! | TGGCGAAGCATTGTCTTTGT+AGG | - | tig0019825:109730-109749 | Msa1376610:CDS | 45.0% |
! | TTTGTAGGACATGCTGGTCT+GGG | - | tig0019825:109745-109764 | Msa1376610:CDS | 45.0% |
TAGTAACTAGTCAGAGGGTG+TGG | + | tig0019825:109848-109867 | None:intergenic | 45.0% | |
ATCACAGCGATATGGTGACT+GGG | + | tig0019825:109927-109946 | None:intergenic | 45.0% | |
AATCACAGCGATATGGTGAC+TGG | + | tig0019825:109928-109947 | None:intergenic | 45.0% | |
! | TTTGGGGTAGCTTAACCCAT+GGG | - | tig0019825:110015-110034 | Msa1376610:five_prime_UTR | 45.0% |
GTAGCTTGAAGTTATGCCCA+TGG | + | tig0019825:110034-110053 | None:intergenic | 45.0% | |
!! | TAATAATAATGAATTATAAA+AGG | + | tig0019825:105739-105758 | None:intergenic | 5.0% |
GAGAGAGAGAGAATGAGTGG+TGG | - | tig0019825:105272-105291 | Msa1376610:three_prime_UTR | 50.0% | |
AGAGAGAGAATGAGTGGTGG+AGG | - | tig0019825:105275-105294 | Msa1376610:three_prime_UTR | 50.0% | |
! | AGAATGAGTGGTGGAGGTGA+AGG | - | tig0019825:105281-105300 | Msa1376610:three_prime_UTR | 50.0% |
ACTTGAGTTCACACCGACGT+GGG | - | tig0019825:105322-105341 | Msa1376610:three_prime_UTR | 50.0% | |
TGTTGCGATTTCACTTGCGG+TGG | - | tig0019825:105370-105389 | Msa1376610:three_prime_UTR | 50.0% | |
GTGGAGCGTGTTCTTCACTA+TGG | - | tig0019825:105389-105408 | Msa1376610:three_prime_UTR | 50.0% | |
GAGCGTGTTCTTCACTATGG+AGG | - | tig0019825:105392-105411 | Msa1376610:three_prime_UTR | 50.0% | |
ATGTGACGCAATACACCAGG+CGG | + | tig0019825:105551-105570 | None:intergenic | 50.0% | |
AGCATGTGACGCAATACACC+AGG | + | tig0019825:105554-105573 | None:intergenic | 50.0% | |
CATGCTTCCATGTAGACTGG+AGG | - | tig0019825:105568-105587 | Msa1376610:three_prime_UTR | 50.0% | |
! | TCCGCTTTCTCTTTTCCAGC+TGG | - | tig0019825:105617-105636 | Msa1376610:three_prime_UTR | 50.0% |
CGTCTTGCAATTCTACCAGC+TGG | + | tig0019825:105635-105654 | None:intergenic | 50.0% | |
GAGGTTCTTCTTCTGCAAGG+AGG | + | tig0019825:105673-105692 | None:intergenic | 50.0% | |
TGAGAACGGAGAAAGTGACG+TGG | + | tig0019825:105887-105906 | None:intergenic | 50.0% | |
!!! | AAGGGCCGCTTTTCTGGTTT+CGG | - | tig0019825:106201-106220 | Msa1376610:CDS | 50.0% |
GGCAAAGACTCTGCTCTCAT+CGG | - | tig0019825:106222-106241 | Msa1376610:CDS | 50.0% | |
AAGACTCTGCTCTCATCGGT+TGG | - | tig0019825:106226-106245 | Msa1376610:CDS | 50.0% | |
GGTGATGAGTCAAGCATGAC+TGG | - | tig0019825:107521-107540 | Msa1376610:intron | 50.0% | |
GAGTCGAACTCAGTTCAGCT+CGG | + | tig0019825:108220-108239 | None:intergenic | 50.0% | |
AGCAGGAGATACAAGGTGCA+GGG | + | tig0019825:108599-108618 | None:intergenic | 50.0% | |
AAGCAGGAGATACAAGGTGC+AGG | + | tig0019825:108600-108619 | None:intergenic | 50.0% | |
TGCAGCCATAGAAGGTGACT+TGG | - | tig0019825:108726-108745 | Msa1376610:CDS | 50.0% | |
GGCAGACAACATCACGAGTA+TGG | + | tig0019825:108887-108906 | None:intergenic | 50.0% | |
! | CGTTTCGAAAGGGCATACTG+TGG | - | tig0019825:108931-108950 | Msa1376610:intron | 50.0% |
TCCCTCCATGTTGGGGTTAT+AGG | - | tig0019825:109190-109209 | Msa1376610:intron | 50.0% | |
CCCTATAACCCCAACATGGA+GGG | + | tig0019825:109194-109213 | None:intergenic | 50.0% | |
CCCTCCATGTTGGGGTTATA+GGG | - | tig0019825:109191-109210 | Msa1376610:intron | 50.0% | |
ACCCTATAACCCCAACATGG+AGG | + | tig0019825:109195-109214 | None:intergenic | 50.0% | |
CAACAATGCCCACTTGCACA+TGG | + | tig0019825:109395-109414 | None:intergenic | 50.0% | |
! | CATGTGCAAGTGGGCATTGT+TGG | - | tig0019825:109393-109412 | Msa1376610:CDS | 50.0% |
CTTTGTAGGACATGCTGGTC+TGG | - | tig0019825:109744-109763 | Msa1376610:CDS | 50.0% | |
CTGGTCTGGGTATAGGTATG+TGG | - | tig0019825:109758-109777 | Msa1376610:CDS | 50.0% | |
! | TAACTAGTCAGAGGGTGTGG+TGG | + | tig0019825:109845-109864 | None:intergenic | 50.0% |
TCACAGCGATATGGTGACTG+GGG | + | tig0019825:109926-109945 | None:intergenic | 50.0% | |
!! | CTTTGGGGTAGCTTAACCCA+TGG | - | tig0019825:110014-110033 | Msa1376610:five_prime_UTR | 50.0% |
! | ATGAGTGGTGGAGGTGAAGG+AGG | - | tig0019825:105284-105303 | Msa1376610:three_prime_UTR | 55.0% |
CACTTGAGTTCACACCGACG+TGG | - | tig0019825:105321-105340 | Msa1376610:three_prime_UTR | 55.0% | |
! | AACTGGTTTCTGCGGTCGCA+AGG | - | tig0019825:105697-105716 | Msa1376610:CDS | 55.0% |
! | AGATACGTCAGTGGAAGCGC+TGG | - | tig0019825:106012-106031 | Msa1376610:CDS | 55.0% |
!! | GATACGTCAGTGGAAGCGCT+GGG | - | tig0019825:106013-106032 | Msa1376610:CDS | 55.0% |
! | CTCTGCTCTCATCGGTTGGT+TGG | - | tig0019825:106230-106249 | Msa1376610:CDS | 55.0% |
ACTTTCCGTGGGAACGAAGC+TGG | - | tig0019825:108660-108679 | Msa1376610:intron | 55.0% | |
ATGCTCCAGCTTCGTTCCCA+CGG | + | tig0019825:108668-108687 | None:intergenic | 55.0% | |
! | AAGGGCATACTGTGGGGTTG+AGG | - | tig0019825:108939-108958 | Msa1376610:intron | 55.0% |
AGGGCATACTGTGGGGTTGA+GGG | - | tig0019825:108940-108959 | Msa1376610:intron | 55.0% | |
! | TGCAAGTGGGCATTGTTGGC+TGG | - | tig0019825:109397-109416 | Msa1376610:CDS | 55.0% |
! | GCAAGTGGGCATTGTTGGCT+GGG | - | tig0019825:109398-109417 | Msa1376610:CDS | 55.0% |
! | CATTGTTGGCTGGGCAGAGA+AGG | - | tig0019825:109407-109426 | Msa1376610:CDS | 55.0% |
GAGAACTTCCTTGGCTAGGC+TGG | + | tig0019825:109464-109483 | None:intergenic | 55.0% | |
CATACTCAGTTGGACCCCTC+AGG | + | tig0019825:109588-109607 | None:intergenic | 55.0% | |
AAGACAATGCTTCGCCACGC+TGG | + | tig0019825:109727-109746 | None:intergenic | 55.0% | |
! | GGACATGCTGGTCTGGGTAT+AGG | - | tig0019825:109751-109770 | Msa1376610:CDS | 55.0% |
AGGGTGTGGTGGCAGATCTT+AGG | + | tig0019825:109834-109853 | None:intergenic | 55.0% | |
ACACCGACGTGGGTAGTTGC+CGG | - | tig0019825:105332-105351 | Msa1376610:three_prime_UTR | 60.0% | |
ACGCCGGCAACTACCCACGT+CGG | + | tig0019825:105338-105357 | None:intergenic | 65.0% | |
GCTGATGGCCAGCCTAGCCA+AGG | - | tig0019825:109453-109472 | Msa1376610:intron | 65.0% | |
CGGGAGCTGATGCCCTCTTC+TGG | + | tig0019825:109542-109561 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0019825 | gene | 105209 | 110070 | 105209 | ID=Msa1376610;Name=Msa1376610 |
tig0019825 | mRNA | 105209 | 110070 | 105209 | ID=Msa1376610-mRNA-1;Parent=Msa1376610;Name=Msa1376610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=75|0.90|0.91|1|0.72|0.83|12|468|519 |
tig0019825 | exon | 105209 | 105922 | 105209 | ID=Msa1376610-mRNA-1:exon:5292;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 106007 | 106067 | 106007 | ID=Msa1376610-mRNA-1:exon:5291;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 106197 | 106264 | 106197 | ID=Msa1376610-mRNA-1:exon:5290;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 106415 | 106624 | 106415 | ID=Msa1376610-mRNA-1:exon:5289;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 107574 | 107614 | 107574 | ID=Msa1376610-mRNA-1:exon:5288;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 108258 | 108307 | 108258 | ID=Msa1376610-mRNA-1:exon:5287;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 108468 | 108568 | 108468 | ID=Msa1376610-mRNA-1:exon:5286;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 108687 | 108761 | 108687 | ID=Msa1376610-mRNA-1:exon:5285;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 109028 | 109122 | 109028 | ID=Msa1376610-mRNA-1:exon:5284;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 109205 | 109265 | 109205 | ID=Msa1376610-mRNA-1:exon:5283;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 109350 | 109466 | 109350 | ID=Msa1376610-mRNA-1:exon:5282;Parent=Msa1376610-mRNA-1 |
tig0019825 | exon | 109561 | 110070 | 109561 | ID=Msa1376610-mRNA-1:exon:5281;Parent=Msa1376610-mRNA-1 |
tig0019825 | five_prime_UTR | 109996 | 110070 | 109996 | ID=Msa1376610-mRNA-1:five_prime_utr;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 109561 | 109995 | 109561 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 109350 | 109466 | 109350 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 109205 | 109265 | 109205 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 109028 | 109122 | 109028 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 108687 | 108761 | 108687 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 108468 | 108568 | 108468 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 108258 | 108307 | 108258 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 107574 | 107614 | 107574 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 106415 | 106624 | 106415 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 106197 | 106264 | 106197 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 106007 | 106067 | 106007 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | CDS | 105677 | 105922 | 105677 | ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1 |
tig0019825 | three_prime_UTR | 105209 | 105676 | 105209 | ID=Msa1376610-mRNA-1:three_prime_utr;Parent=Msa1376610-mRNA-1 |
Gene Sequence |
Protein sequence |