AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376610 MtrunA17_Chr3g0145831 96.558 523 8 4 1 519 1 517 0.0 1017
Msa1376610 MtrunA17_Chr8g0337941 68.208 519 138 10 14 518 14 519 0.0 687
Msa1376610 MtrunA17_Chr8g0337931 64.016 503 156 8 30 518 15 506 0.0 635
Msa1376610 MtrunA17_Chr2g0291441 54.889 450 179 7 8 454 2 430 6.21e-158 458
Msa1376610 MtrunA17_Chr3g0144171 43.888 499 247 10 1 483 1 482 9.88e-134 399
Msa1376610 MtrunA17_Chr5g0407381 41.767 498 265 7 3 495 19 496 1.18e-127 384
Msa1376610 MtrunA17_Chr8g0370181 40.705 511 273 9 1 505 27 513 8.26e-127 382
Msa1376610 MtrunA17_Chr6g0462051 37.833 526 297 9 5 519 2 508 3.99e-118 359
Msa1376610 MtrunA17_Chr2g0326301 40.194 515 273 10 1 506 1 489 7.29e-118 359
Msa1376610 MtrunA17_Chr2g0317801 40.506 474 246 10 5 467 2 450 3.49e-114 348
Msa1376610 MtrunA17_Chr3g0144201 37.158 549 277 9 10 507 9 540 3.02e-111 342
Msa1376610 MtrunA17_Chr4g0040611 36.047 516 294 10 10 519 5 490 2.55e-105 326
Msa1376610 MtrunA17_Chr2g0277471 38.280 465 261 10 9 466 6 451 3.17e-89 284
Msa1376610 MtrunA17_Chr5g0405641 33.920 398 237 11 6 393 4 385 4.54e-51 179
Msa1376610 MtrunA17_Chr5g0405651 42.188 64 37 0 405 468 1 64 4.49e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376610 AT4G02600.2 65.511 548 138 10 1 519 1 526 0.0 688
Msa1376610 AT4G02600.1 65.511 548 138 10 1 519 1 526 0.0 688
Msa1376610 AT2G44110.2 58.008 512 186 8 1 509 1 486 0.0 595
Msa1376610 AT2G44110.1 58.203 512 184 9 1 509 1 485 0.0 591
Msa1376610 AT4G24250.1 54.772 482 189 8 13 482 8 472 1.52e-171 493
Msa1376610 AT4G24250.2 55.529 416 161 7 10 418 5 403 3.31e-147 428
Msa1376610 AT2G33670.1 44.589 462 237 6 14 475 17 459 5.36e-128 383
Msa1376610 AT1G61560.1 39.306 519 300 8 10 519 6 518 9.69e-123 372
Msa1376610 AT1G61560.4 39.539 521 296 10 10 519 6 518 8.27e-122 370
Msa1376610 AT2G17480.1 43.016 451 235 8 14 459 41 474 1.88e-121 369
Msa1376610 AT2G17430.1 41.387 476 255 7 2 477 24 475 6.29e-121 366
Msa1376610 AT1G42560.1 43.982 457 239 6 14 467 16 458 6.76e-120 360
Msa1376610 AT1G61560.10 41.150 452 248 7 10 449 6 451 2.95e-116 351
Msa1376610 AT1G11310.1 39.808 520 293 9 10 518 6 516 1.19e-115 353
Msa1376610 AT2G39200.1 39.506 486 281 6 10 490 4 481 5.28e-114 349
Msa1376610 AT5G53760.2 40.447 492 261 10 3 482 7 478 1.44e-113 348
Msa1376610 AT5G53760.1 40.447 492 261 10 3 482 7 478 1.44e-113 348
Msa1376610 AT1G26700.1 39.130 506 295 8 6 509 4 498 7.10e-111 340
Msa1376610 AT1G26700.2 39.130 506 295 8 6 509 4 498 7.10e-111 340
Msa1376610 AT5G65970.1 40.217 460 244 8 3 459 25 456 9.69e-111 340
Msa1376610 AT3G45290.1 38.596 456 259 6 13 467 18 453 5.41e-107 329
Msa1376610 AT1G61560.7 40.144 416 236 6 10 418 6 415 1.58e-103 317
Msa1376610 AT1G61560.9 40.144 416 236 6 10 418 6 415 1.58e-103 317
Msa1376610 AT1G61560.6 40.887 406 225 7 10 408 6 403 1.02e-102 314
Msa1376610 AT1G61560.8 40.887 406 225 7 10 408 6 403 1.02e-102 314
Msa1376610 AT1G61560.5 40.887 406 225 7 10 408 6 403 1.02e-102 314
Msa1376610 AT1G61560.2 37.879 462 272 8 67 519 1 456 1.68e-100 313
Msa1376610 AT1G61560.3 37.879 462 272 8 67 519 1 456 1.68e-100 313
Msa1376610 AT1G11310.3 38.877 463 263 9 67 518 1 454 9.81e-97 303
Msa1376610 AT1G11310.2 40.095 419 235 6 10 418 6 418 1.91e-96 299
Msa1376610 AT1G42560.2 42.895 373 196 6 14 383 16 374 1.96e-87 274
Msa1376610 AT1G11000.1 37.975 474 249 10 9 466 6 450 2.10e-87 280
Msa1376610 AT1G11000.3 37.975 474 249 10 9 466 6 450 2.10e-87 280
Msa1376610 AT5G65970.2 39.096 376 190 8 3 371 25 368 8.68e-82 263
Msa1376610 AT1G11000.2 37.972 424 224 10 9 419 6 403 5.00e-71 233

Find 143 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTTGGCATACATATTTC+TGG 0.151627 tig0019825:-107595 Msa1376610:CDS
TCAACTCTTCTTTGATCTTC+TGG 0.174477 tig0019825:+109797 None:intergenic
CAAAGAAGAGTTGATGCTTT+TGG 0.184648 tig0019825:-109788 Msa1376610:CDS
ATGCTATCTCAAAAGCATTT+TGG 0.206491 tig0019825:+106432 None:intergenic
GCCATAAAATTGCTTGAAAA+AGG 0.208333 tig0019825:+108735 None:intergenic
ATGGTTGCAGTTGGTATCTT+TGG 0.209055 tig0019825:-108295 Msa1376610:intron
GGGTTATAGGGTATTTATTC+AGG 0.269576 tig0019825:-106054 Msa1376610:intron
CTTTGTAGGACATGCTGGTC+TGG 0.275970 tig0019825:-105513 Msa1376610:three_prime_UTR
CGGGAGCTGATGCCCTCTTC+TGG 0.279234 tig0019825:+105718 None:intergenic
TCACACAACATTACAAAATA+AGG 0.289610 tig0019825:+105596 None:intergenic
TGGATTTGACTCCTGTATAA+TGG 0.294490 tig0019825:-106234 Msa1376610:CDS
ATTAAGGTACTTACAATAAC+AGG 0.304841 tig0019825:+107560 None:intergenic
TGCAAGTGGGCATTGTTGGC+TGG 0.318793 tig0019825:-105860 Msa1376610:CDS
ATTGTTCCAAGGCTCGTTAT+TGG 0.341091 tig0019825:-106197 Msa1376610:CDS
AACCATCAGATAATCACTTT+TGG 0.341472 tig0019825:-106502 Msa1376610:CDS
AACAACCAAGTCACCTTCTA+TGG 0.342321 tig0019825:+106526 None:intergenic
CAGCTACTTCATGAGCTAGT+TGG 0.351518 tig0019825:+106561 None:intergenic
TTGTTCCAAGGCTCGTTATT+GGG 0.352604 tig0019825:-106196 Msa1376610:intron
GTTAATGTTATAAACGCAAT+AGG 0.356028 tig0019825:-105635 Msa1376610:three_prime_UTR
GAAGAAGAACCTCTTAAAAC+TGG 0.362207 tig0019825:-109577 Msa1376610:CDS
AATGAAGTAAATGCACAAAC+AGG 0.366506 tig0019825:+105270 None:intergenic
GAGCTTCGTAAAGTGACTTT+TGG 0.367340 tig0019825:+109821 None:intergenic
GTTACAGAAGTATTGTCTTC+GGG 0.367463 tig0019825:+105699 None:intergenic
AGAAATGAACGCAGCATTGA+TGG 0.368050 tig0019825:+105454 None:intergenic
TTTGCAAAATCACAGCGATA+TGG 0.374052 tig0019825:+105325 None:intergenic
TACACTTATCATCTGTCATA+TGG 0.374885 tig0019825:-105391 Msa1376610:three_prime_UTR
ACTTGTGAAAATTAAACTTT+GGG 0.379514 tig0019825:+108529 None:intergenic
AGCTACTTCATGAGCTAGTT+GGG 0.384754 tig0019825:+106562 None:intergenic
TACTTGTGAAAATTAAACTT+TGG 0.386200 tig0019825:+108528 None:intergenic
GGATTTGACTCCTGTATAAT+GGG 0.399306 tig0019825:-106233 Msa1376610:CDS
ACTGGGGAAGTATTACTATT+AGG 0.400570 tig0019825:+105350 None:intergenic
AGAATGAGTGGTGGAGGTGA+AGG 0.410123 tig0019825:-109976 Msa1376610:CDS
GGACATGCTGGTCTGGGTAT+AGG 0.412054 tig0019825:-105506 Msa1376610:three_prime_UTR
CATGTGCAAGTGGGCATTGT+TGG 0.413610 tig0019825:-105864 Msa1376610:CDS
TGGCGAAGCATTGTCTTTGT+AGG 0.414966 tig0019825:-105527 Msa1376610:three_prime_UTR
TCAAGCAAGTTGTCGGCATA+AGG 0.417979 tig0019825:-108479 Msa1376610:CDS
TTCTTGTTGTTAAATATCAA+TGG 0.418291 tig0019825:-108257 Msa1376610:intron
AGTTACAGAAGTATTGTCTT+CGG 0.421254 tig0019825:+105698 None:intergenic
TCGTATTCTCAGGTTACATA+TGG 0.421389 tig0019825:-106254 Msa1376610:intron
ATTAAGACTTGGCTTCATTA+CGG 0.421485 tig0019825:-108686 Msa1376610:intron
ACTTTCCGTGGGAACGAAGC+TGG 0.425162 tig0019825:-106597 Msa1376610:CDS
TTGGTATCTTTGGCTCTTTG+TGG 0.431225 tig0019825:-108285 Msa1376610:CDS
CCAACTGAGTATGCTTATCT+AGG 0.433871 tig0019825:-105662 Msa1376610:exon
GAAAAGCATGCAGCCATAGA+AGG 0.433917 tig0019825:-106539 Msa1376610:CDS
AGATGGGAAGTCACTTTAAG+AGG 0.441814 tig0019825:-105902 Msa1376610:CDS
AGGGTGTGGTGGCAGATCTT+AGG 0.442821 tig0019825:+105426 None:intergenic
GTGGAGCGTGTTCTTCACTA+TGG 0.444422 tig0019825:-109868 Msa1376610:CDS
GAGAACTTCCTTGGCTAGGC+TGG 0.446072 tig0019825:+105796 None:intergenic
CTTGCTTGAAATCATCTTCA+AGG 0.448142 tig0019825:+108493 None:intergenic
GGTAGTACTGGTAGTAGTAC+TGG 0.448339 tig0019825:-105762 Msa1376610:CDS
AGAGAGAGAATGAGTGGTGG+AGG 0.449897 tig0019825:-109982 Msa1376610:exon
ATGAGTGGTGGAGGTGAAGG+AGG 0.453792 tig0019825:-109973 Msa1376610:CDS
TTTGTAGGACATGCTGGTCT+GGG 0.453952 tig0019825:-105512 Msa1376610:three_prime_UTR
AAAGCTTCGACAGATAATAA+AGG 0.455273 tig0019825:+109435 None:intergenic
ACACCGACGTGGGTAGTTGC+CGG 0.455609 tig0019825:-109925 Msa1376610:CDS
GATGATTTCAAGCAAGTTGT+CGG 0.456829 tig0019825:-108486 Msa1376610:CDS
AACGCAATAGGATGCTTTGT+AGG 0.461397 tig0019825:-105623 Msa1376610:three_prime_UTR
TCAACAGCATGAATTTATCA+AGG 0.469213 tig0019825:-109075 Msa1376610:CDS
CATGAGTATGAGAACTTCCT+TGG 0.473751 tig0019825:+105787 None:intergenic
AGATACGTCAGTGGAAGCGC+TGG 0.481697 tig0019825:-109245 Msa1376610:CDS
GCAAGTGGGCATTGTTGGCT+GGG 0.482752 tig0019825:-105859 Msa1376610:CDS
TCTTTGTCCTCCAGTCTACA+TGG 0.483314 tig0019825:+109682 None:intergenic
CTTTGGGTTTGTCTTGCAGT+GGG 0.484627 tig0019825:+108545 None:intergenic
CATACTCATGAGGGTAGTAC+TGG 0.487612 tig0019825:-105774 Msa1376610:CDS
CATACTCAGTTGGACCCCTC+AGG 0.496662 tig0019825:+105672 None:intergenic
ATTGTCTTTGTAGGACATGC+TGG 0.496691 tig0019825:-105518 Msa1376610:three_prime_UTR
CATTGTTGGCTGGGCAGAGA+AGG 0.507997 tig0019825:-105850 Msa1376610:CDS
AACTGGTTTCTGCGGTCGCA+AGG 0.509634 tig0019825:-109560 Msa1376610:intron
CTCTGCTCTCATCGGTTGGT+TGG 0.510427 tig0019825:-109027 Msa1376610:intron
AATCACAGCGATATGGTGAC+TGG 0.511740 tig0019825:+105332 None:intergenic
AGTAGTACTGGAATTCAGCT+TGG 0.515296 tig0019825:-105750 Msa1376610:CDS
GGCAAAGACTCTGCTCTCAT+CGG 0.516978 tig0019825:-109035 Msa1376610:CDS
CGTCTTGCAATTCTACCAGC+TGG 0.518487 tig0019825:+109625 None:intergenic
ACGAACTTGACCCATTATAC+AGG 0.519596 tig0019825:+106223 None:intergenic
ACTTTGGGTTTGTCTTGCAG+TGG 0.521242 tig0019825:+108544 None:intergenic
TCACATGCTTCCATGTAGAC+TGG 0.535010 tig0019825:-109692 Msa1376610:CDS
AAGACTCTGCTCTCATCGGT+TGG 0.545020 tig0019825:-109031 Msa1376610:CDS
TGTTGAACATGAGTCAACTT+TGG 0.546220 tig0019825:+109092 None:intergenic
GTAGTACTGGAATTCAGCTT+GGG 0.550167 tig0019825:-105749 Msa1376610:CDS
AAGTTCGTTACATTGTTCCA+AGG 0.552285 tig0019825:-106208 Msa1376610:CDS
TAAGAGGTTCTTCTTCTGCA+AGG 0.553608 tig0019825:+109584 None:intergenic
CTTTGGGGTAGCTTAACCCA+TGG 0.555130 tig0019825:-105243 Msa1376610:three_prime_UTR
ATGCTCCAGCTTCGTTCCCA+CGG 0.556685 tig0019825:+106592 None:intergenic
GATTATGTCACATTAAGACT+TGG 0.560197 tig0019825:-108697 Msa1376610:CDS
TTGCTTGAAATCATCTTCAA+GGG 0.563434 tig0019825:+108494 None:intergenic
TGCAGCCATAGAAGGTGACT+TGG 0.563591 tig0019825:-106531 Msa1376610:CDS
ATCACAGCGATATGGTGACT+GGG 0.566071 tig0019825:+105333 None:intergenic
TAGTAACTAGTCAGAGGGTG+TGG 0.569921 tig0019825:+105412 None:intergenic
GTAGCTTGAAGTTATGCCCA+TGG 0.570673 tig0019825:+105226 None:intergenic
GATTGTTGCGATTTCACTTG+CGG 0.578805 tig0019825:-109890 Msa1376610:CDS
GTATGAGAACTTCCTTGGCT+AGG 0.580640 tig0019825:+105792 None:intergenic
ATTCAATGACCATGTGCAAG+TGG 0.582074 tig0019825:-105874 Msa1376610:CDS
CCTAGATAAGCATACTCAGT+TGG 0.583411 tig0019825:+105662 None:intergenic
AGCATGTGACGCAATACACC+AGG 0.586001 tig0019825:+109706 None:intergenic
CTGGTCTGGGTATAGGTATG+TGG 0.586723 tig0019825:-105499 Msa1376610:three_prime_UTR
AATTACCCAATAACGAGCCT+TGG 0.587733 tig0019825:+106191 None:intergenic
CAACAGCATGAATTTATCAA+GGG 0.591378 tig0019825:-109074 Msa1376610:CDS
TAACAACTGCGTAGAGTGGT+AGG 0.592499 tig0019825:+106012 None:intergenic
CTGGGAAGATTCTATTGCAA+AGG 0.593005 tig0019825:-109226 Msa1376610:CDS
ACTTCTGTAACTAAACCTGA+GGG 0.596923 tig0019825:-105687 Msa1376610:CDS
GCTGATGGCCAGCCTAGCCA+AGG 0.603904 tig0019825:-105804 Msa1376610:CDS
GATGGGAAGTCACTTTAAGA+GGG 0.604640 tig0019825:-105901 Msa1376610:CDS
TAGCTTGAAGTTATGCCCAT+GGG 0.604707 tig0019825:+105227 None:intergenic
GGAAGTTCTCATACTCATGA+GGG 0.610453 tig0019825:-105783 Msa1376610:CDS
AGTAAAAGAAGAACGACGGT+TGG 0.611653 tig0019825:-110030 Msa1376610:five_prime_UTR
TTTGGGGTAGCTTAACCCAT+GGG 0.611762 tig0019825:-105242 Msa1376610:three_prime_UTR
CCTCTTAAAACTGGTTTCTG+CGG 0.613016 tig0019825:-109568 Msa1376610:CDS
GATACGTCAGTGGAAGCGCT+GGG 0.613910 tig0019825:-109244 Msa1376610:CDS
TTCAATGACCATGTGCAAGT+GGG 0.616207 tig0019825:-105873 Msa1376610:CDS
GAGAATTATGATACTAACAA+AGG 0.617402 tig0019825:-109204 Msa1376610:intron
AGGAAGTTCTCATACTCATG+AGG 0.617919 tig0019825:-105784 Msa1376610:CDS
AAGAAAGCACTAAAAGCTGA+TGG 0.617932 tig0019825:-105819 Msa1376610:CDS
CAACAATGCCCACTTGCACA+TGG 0.622950 tig0019825:+105865 None:intergenic
TAACTAGTCAGAGGGTGTGG+TGG 0.624133 tig0019825:+105415 None:intergenic
AAGACAATGCTTCGCCACGC+TGG 0.624136 tig0019825:+105533 None:intergenic
AAGTGTAGTAACTAGTCAGA+GGG 0.624877 tig0019825:+105407 None:intergenic
TACTTCTGTAACTAAACCTG+AGG 0.629767 tig0019825:-105688 Msa1376610:CDS
CTTTGCCGAAACCAGAAAAG+CGG 0.634483 tig0019825:+109051 None:intergenic
ACCAGCTGGAAAAGAGAAAG+CGG 0.639460 tig0019825:+109639 None:intergenic
CACTTGAGTTCACACCGACG+TGG 0.642618 tig0019825:-109936 Msa1376610:CDS
ATGAAGTAAATGCACAAACA+GGG 0.642673 tig0019825:+105271 None:intergenic
AACAACTGCGTAGAGTGGTA+GGG 0.646677 tig0019825:+106013 None:intergenic
AACAATCACAGTGCATACGC+CGG 0.646759 tig0019825:+109906 None:intergenic
TAAGTGTAGTAACTAGTCAG+AGG 0.653617 tig0019825:+105406 None:intergenic
AACCAAAAGTGATTATCTGA+TGG 0.656311 tig0019825:+106500 None:intergenic
TGTGTAACAACTGCGTAGAG+TGG 0.658879 tig0019825:+106008 None:intergenic
GAGGTTCTTCTTCTGCAAGG+AGG 0.660182 tig0019825:+109587 None:intergenic
GCTACTCCACGGTTACACCA+TGG 0.661652 tig0019825:-105208 None:intergenic
ATTAAGAAGAGAACGATGTG+AGG 0.663083 tig0019825:+106470 None:intergenic
GAGCGTGTTCTTCACTATGG+AGG 0.672633 tig0019825:-109865 Msa1376610:CDS
ACTCTACGCAGTTGTTACAC+AGG 0.675035 tig0019825:-106006 Msa1376610:intron
CATAACTTCAAGCTACTCCA+CGG 0.675292 tig0019825:-105219 Msa1376610:three_prime_UTR
TGTTGCGATTTCACTTGCGG+TGG 0.678387 tig0019825:-109887 Msa1376610:CDS
TAATAATATAGATACGTCAG+TGG 0.683998 tig0019825:-109254 Msa1376610:intron
TCACAGCGATATGGTGACTG+GGG 0.686278 tig0019825:+105334 None:intergenic
CATGCTTCCATGTAGACTGG+AGG 0.690856 tig0019825:-109689 Msa1376610:CDS
ACTTGAGTTCACACCGACGT+GGG 0.706980 tig0019825:-109935 Msa1376610:CDS
AAGTAAATGCACAAACAGGG+AGG 0.713853 tig0019825:+105274 None:intergenic
GAACAGTAAAAGAAGAACGA+CGG 0.720401 tig0019825:-110034 Msa1376610:five_prime_UTR
TGAGAACGGAGAAAGTGACG+TGG 0.720981 tig0019825:+109373 None:intergenic
ATGTGACGCAATACACCAGG+CGG 0.723088 tig0019825:+109709 None:intergenic
CTTCTGTAACTAAACCTGAG+GGG 0.738449 tig0019825:-105686 Msa1376610:CDS
ACGCCGGCAACTACCCACGT+CGG 0.774441 tig0019825:+109922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTGTAAAAAAAAAAAAAAA+AGG + tig0019825:105794-105813 None:intergenic 10.0%
!! AAATAAATATATTGTTAATC+TGG + tig0019825:106401-106420 None:intergenic 10.0%
!! TGTTATTATGATTTATTTAT+TGG + tig0019825:106665-106684 None:intergenic 10.0%
!!! TATTTTTCTTTGTAAATTTA+TGG + tig0019825:107127-107146 None:intergenic 10.0%
!! ATAAATTTACAAAGAAAAAT+AGG - tig0019825:107126-107145 Msa1376610:intron 10.0%
!! ATGAAAATAAACAATAAAAA+AGG + tig0019825:107733-107752 None:intergenic 10.0%
!!! TTTTTTATTGTTTATTTTCA+TGG - tig0019825:107732-107751 Msa1376610:intron 10.0%
!!! CAGTTTTTTTTTTTTTTTTT+TGG + tig0019825:107934-107953 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAAAAAC+TGG - tig0019825:107932-107951 Msa1376610:intron 10.0%
!!! TTTTTTTTTTTTACAGAACA+AGG - tig0019825:105797-105816 Msa1376610:CDS 15.0%
!! GTATAAAATATTAGGAAAAA+TGG + tig0019825:106489-106508 None:intergenic 15.0%
!!! TGAAAGAAGTATAAAATATT+AGG + tig0019825:106497-106516 None:intergenic 15.0%
!!! CAATTCTAAATATATTTTCA+TGG - tig0019825:106943-106962 Msa1376610:intron 15.0%
!! TTATAAGAAGAAACATAAAT+AGG + tig0019825:107355-107374 None:intergenic 15.0%
!! TAAACAATAATAAATGGTAT+AGG + tig0019825:107415-107434 None:intergenic 15.0%
!! CATATGTAAACAATAATAAA+TGG + tig0019825:107421-107440 None:intergenic 15.0%
!!! TATGATAAATTTTTGTGATT+GGG - tig0019825:107500-107519 Msa1376610:intron 15.0%
!! ATAAACAATAAAAAAGGAAA+AGG + tig0019825:107727-107746 None:intergenic 15.0%
!! ATGTGCAATAATAAGTTATA+AGG + tig0019825:106085-106104 None:intergenic 20.0%
!! TGAAAATGAATAATAATGTG+AGG + tig0019825:106297-106316 None:intergenic 20.0%
!! AAAAACAAGATTGAAAAACA+GGG + tig0019825:106328-106347 None:intergenic 20.0%
!! AAAAAACAAGATTGAAAAAC+AGG + tig0019825:106329-106348 None:intergenic 20.0%
!! TATAGTGGTAATTAAAACTA+GGG + tig0019825:106354-106373 None:intergenic 20.0%
!! ACTTGTGAAAATTAAACTTT+GGG + tig0019825:106731-106750 None:intergenic 20.0%
!! TACTTGTGAAAATTAAACTT+TGG + tig0019825:106732-106751 None:intergenic 20.0%
!!! TTTTTGACAAAATTAGTCTA+CGG + tig0019825:106813-106832 None:intergenic 20.0%
!!! TTCTTGTTGTTAAATATCAA+TGG - tig0019825:107000-107019 Msa1376610:intron 20.0%
!! TTAAAAACATAATGTGAGTA+TGG - tig0019825:107184-107203 Msa1376610:intron 20.0%
!! TAAAAACATAATGTGAGTAT+GGG - tig0019825:107185-107204 Msa1376610:intron 20.0%
!! TAACATTATCTGATCTAAAA+TGG - tig0019825:107372-107391 Msa1376610:intron 20.0%
!! TTTATTTAAACAACACTTTC+TGG - tig0019825:107477-107496 Msa1376610:intron 20.0%
!!! GTATGATAAATTTTTGTGAT+TGG - tig0019825:107499-107518 Msa1376610:intron 20.0%
!!! AAAAGGAAAAGGTTTTATTA+AGG + tig0019825:107716-107735 None:intergenic 20.0%
!! AAGTTCAATGAGTTAATTAT+CGG + tig0019825:108018-108037 None:intergenic 20.0%
!! AAGATAGTATACTATACTTA+GGG + tig0019825:108251-108270 None:intergenic 20.0%
!! AAAGATAGTATACTATACTT+AGG + tig0019825:108252-108271 None:intergenic 20.0%
!!! GAATGACATGTTATTTATAT+TGG - tig0019825:108345-108364 Msa1376610:intron 20.0%
!!! ATTTACTTCATTTTCACTTT+GGG - tig0019825:109998-110017 Msa1376610:five_prime_UTR 20.0%
!!! ACTTTTGGTCTTTACTTTTA+AGG + tig0019825:105424-105443 None:intergenic 25.0%
! TAATAATATAGATACGTCAG+TGG - tig0019825:106003-106022 Msa1376610:intron 25.0%
! GAGAATTATGATACTAACAA+AGG - tig0019825:106053-106072 Msa1376610:intron 25.0%
! GTATAGTGGTAATTAAAACT+AGG + tig0019825:106355-106374 None:intergenic 25.0%
! TGTATAAAAGAACTGTATAG+TGG + tig0019825:106369-106388 None:intergenic 25.0%
!!! TCCTTTTTCAAGCAATTTTA+TGG - tig0019825:106521-106540 Msa1376610:CDS 25.0%
! AGATCATTTGACAACAAATA+TGG + tig0019825:106612-106631 None:intergenic 25.0%
! CAAATGATCTCTCAATTAAT+TGG - tig0019825:106622-106641 Msa1376610:intron 25.0%
!!! CAATTAATTGGCTTTTTATC+TGG - tig0019825:106634-106653 Msa1376610:intron 25.0%
! ACAACAAAGAAATATACGAA+AGG + tig0019825:106689-106708 None:intergenic 25.0%
!! AATTTCTCTCTCTATTGTTT+TGG + tig0019825:107166-107185 None:intergenic 25.0%
! ATTTCAGTTCATCACTTAAT+TGG - tig0019825:107275-107294 Msa1376610:intron 25.0%
!! ATTAAGGTACTTACAATAAC+AGG + tig0019825:107700-107719 None:intergenic 25.0%
! AAATTAAGACATGAGAGATT+TGG + tig0019825:107782-107801 None:intergenic 25.0%
!! TCATGTCTTAATTTTGTGAA+AGG - tig0019825:107788-107807 Msa1376610:intron 25.0%
!! CATGTCTTAATTTTGTGAAA+GGG - tig0019825:107789-107808 Msa1376610:intron 25.0%
! AGTATACTATACTAGTGTAA+GGG + tig0019825:107906-107925 None:intergenic 25.0%
! AAGTATACTATACTAGTGTA+AGG + tig0019825:107907-107926 None:intergenic 25.0%
! AAAACTGGTATAGTATAGTT+AGG - tig0019825:107947-107966 Msa1376610:intron 25.0%
! AAACTGGTATAGTATAGTTA+GGG - tig0019825:107948-107967 Msa1376610:intron 25.0%
! GATAATTAACTCATTGAACT+TGG - tig0019825:108017-108036 Msa1376610:intron 25.0%
!! GACATGTTATTTATATTGGA+TGG - tig0019825:108349-108368 Msa1376610:intron 25.0%
! CCAAGGGTAATAATAATAAT+TGG + tig0019825:108405-108424 None:intergenic 25.0%
! CCAATTATTATTATTACCCT+TGG - tig0019825:108402-108421 Msa1376610:intron 25.0%
! ATTATTATTACCCTTGGTTA+TGG - tig0019825:108408-108427 Msa1376610:intron 25.0%
!! TTTTCTATAACCATAACCAA+GGG + tig0019825:108421-108440 None:intergenic 25.0%
! GAAACAATAACTGATAGAAA+GGG + tig0019825:108467-108486 None:intergenic 25.0%
! AGAAACAATAACTGATAGAA+AGG + tig0019825:108468-108487 None:intergenic 25.0%
! AAAACATGTCTGTGAAAATA+AGG + tig0019825:108497-108516 None:intergenic 25.0%
!!! ATAATCACTTTTGGTTTCAT+CGG - tig0019825:108764-108783 Msa1376610:intron 25.0%
!!! TTGAGATAGCATTTTTTTTC+TGG - tig0019825:108836-108855 Msa1376610:intron 25.0%
!!! TAGCATTTTTTTTCTGGATA+TGG - tig0019825:108842-108861 Msa1376610:intron 25.0%
!!! AGCATTTTTTTTCTGGATAT+GGG - tig0019825:108843-108862 Msa1376610:intron 25.0%
!!! ATATGGGTAAGCAAATTTTT+TGG - tig0019825:108859-108878 Msa1376610:intron 25.0%
! GAAAAGAAGAACAAGTAAAA+TGG + tig0019825:108912-108931 None:intergenic 25.0%
! GTTAATGTTATAAACGCAAT+AGG - tig0019825:109622-109641 Msa1376610:CDS 25.0%
! TCACACAACATTACAAAATA+AGG + tig0019825:109664-109683 None:intergenic 25.0%
!! CATTTACTTCATTTTCACTT+TGG - tig0019825:109997-110016 Msa1376610:five_prime_UTR 25.0%
!! TTTACTTCATTTTCACTTTG+GGG - tig0019825:109999-110018 Msa1376610:five_prime_UTR 25.0%
!!! AAAGAAGAGTTGATGCTTTT+GGG - tig0019825:105470-105489 Msa1376610:three_prime_UTR 30.0%
AGAACAAACAGATCAATGAA+TGG + tig0019825:105768-105787 None:intergenic 30.0%
AAAGCTTCGACAGATAATAA+AGG + tig0019825:105825-105844 None:intergenic 30.0%
CAAGAACAAAAATGAAGATG+TGG + tig0019825:105857-105876 None:intergenic 30.0%
TCAACAGCATGAATTTATCA+AGG - tig0019825:106182-106201 Msa1376610:intron 30.0%
CAACAGCATGAATTTATCAA+GGG - tig0019825:106183-106202 Msa1376610:intron 30.0%
GGAAAAGTTAAAGAAAAGCA+AGG + tig0019825:106468-106487 None:intergenic 30.0%
GCCATAAAATTGCTTGAAAA+AGG + tig0019825:106525-106544 None:intergenic 30.0%
GATTATGTCACATTAAGACT+TGG - tig0019825:106560-106579 Msa1376610:CDS 30.0%
ATTAAGACTTGGCTTCATTA+CGG - tig0019825:106571-106590 Msa1376610:CDS 30.0%
TTGCTTGAAATCATCTTCAA+GGG + tig0019825:106766-106785 None:intergenic 30.0%
TCTCAGATATACATCAGTTT+AGG - tig0019825:106860-106879 Msa1376610:intron 30.0%
TTATGCAATGACATGAACAA+AGG + tig0019825:106902-106921 None:intergenic 30.0%
! TATATTTTCATGGTTGCAGT+TGG - tig0019825:106953-106972 Msa1376610:intron 30.0%
ATTTATGGTTGTCACACAAA+TGG + tig0019825:107112-107131 None:intergenic 30.0%
!! AAGAAAAATAGGTATCGACA+CGG - tig0019825:107137-107156 Msa1376610:intron 30.0%
GAAGAAACATAAATAGGTTC+TGG + tig0019825:107349-107368 None:intergenic 30.0%
TATAGGAATACCAACAACAA+TGG + tig0019825:107398-107417 None:intergenic 30.0%
CCTTGAACACAAAACTAAAT+TGG + tig0019825:107552-107571 None:intergenic 30.0%
!!! CCAATTTAGTTTTGTGTTCA+AGG - tig0019825:107549-107568 Msa1376610:intron 30.0%
! CTTAATTTTGTGAAAGGGAT+AGG - tig0019825:107794-107813 Msa1376610:intron 30.0%
!!! CTTTTTTTTTAGCTCGAACT+CGG + tig0019825:108143-108162 None:intergenic 30.0%
ATGTTGTAAACTAATGGAGT+GGG + tig0019825:108317-108336 None:intergenic 30.0%
AGTCAGATGTTGTAAACTAA+TGG + tig0019825:108323-108342 None:intergenic 30.0%
! CTTTTCTATAACCATAACCA+AGG + tig0019825:108422-108441 None:intergenic 30.0%
AGGGACAAGAAAAAAAATCA+AGG + tig0019825:108580-108599 None:intergenic 30.0%
AAACTGAGAAACAAAAAAGC+AGG + tig0019825:108616-108635 None:intergenic 30.0%
GAAAGTAAAAGCTGAAAGAA+CGG + tig0019825:108646-108665 None:intergenic 30.0%
! AACCATCAGATAATCACTTT+TGG - tig0019825:108755-108774 Msa1376610:intron 30.0%
AACCAAAAGTGATTATCTGA+TGG + tig0019825:108760-108779 None:intergenic 30.0%
!!! ATGCTATCTCAAAAGCATTT+TGG + tig0019825:108828-108847 None:intergenic 30.0%
AGAAGAACAAGTAAAATGGT+TGG + tig0019825:108908-108927 None:intergenic 30.0%
! TTCTTCTTTTCGTTTCGAAA+GGG - tig0019825:108921-108940 Msa1376610:intron 30.0%
AACAAGAGGAAAGATAAATG+AGG + tig0019825:109165-109184 None:intergenic 30.0%
!! AGTTACAGAAGTATTGTCTT+CGG + tig0019825:109562-109581 None:intergenic 30.0%
TACACTTATCATCTGTCATA+TGG - tig0019825:109866-109885 Msa1376610:CDS 30.0%
ATGAAGTAAATGCACAAACA+GGG + tig0019825:109989-110008 None:intergenic 30.0%
AATGAAGTAAATGCACAAAC+AGG + tig0019825:109990-110009 None:intergenic 30.0%
GAACAGTAAAAGAAGAACGA+CGG - tig0019825:105223-105242 Msa1376610:three_prime_UTR 35.0%
TCAACTCTTCTTTGATCTTC+TGG + tig0019825:105463-105482 None:intergenic 35.0%
!!! CAAAGAAGAGTTGATGCTTT+TGG - tig0019825:105469-105488 Msa1376610:three_prime_UTR 35.0%
GAAGAAGAACCTCTTAAAAC+TGG - tig0019825:105680-105699 Msa1376610:CDS 35.0%
GAACAAAAATGAAGATGTGG+AGG + tig0019825:105854-105873 None:intergenic 35.0%
TCCAAAAACAACAGTGAGAA+CGG + tig0019825:105901-105920 None:intergenic 35.0%
TGTTGAACATGAGTCAACTT+TGG + tig0019825:106168-106187 None:intergenic 35.0%
CTTGCTTGAAATCATCTTCA+AGG + tig0019825:106767-106786 None:intergenic 35.0%
GATGATTTCAAGCAAGTTGT+CGG - tig0019825:106771-106790 Msa1376610:intron 35.0%
CAGATATACATCAGTTTAGG+TGG - tig0019825:106863-106882 Msa1376610:intron 35.0%
! TCACTTAATTGGCTCTTACA+TGG - tig0019825:107286-107305 Msa1376610:intron 35.0%
! CACTTAATTGGCTCTTACAT+GGG - tig0019825:107287-107306 Msa1376610:intron 35.0%
CTTATGTAAAGTGACAAGTC+TGG - tig0019825:107320-107339 Msa1376610:intron 35.0%
! TCTAAAATGGCCATTGTTGT+TGG - tig0019825:107385-107404 Msa1376610:intron 35.0%
AGCTGAGTAAACTTAATGTG+TGG + tig0019825:107758-107777 None:intergenic 35.0%
! GTACTGTTGAGATCATTTTC+TGG + tig0019825:107884-107903 None:intergenic 35.0%
!!! GAACTATTTTCGAGTAGGTT+CGG + tig0019825:107985-108004 None:intergenic 35.0%
CAACTCAAGTTCAACTCATT+TGG + tig0019825:108051-108070 None:intergenic 35.0%
CGACTCGATAAGATTTGAAT+CGG + tig0019825:108195-108214 None:intergenic 35.0%
TAGTATACTATACTTAGGGC+TGG + tig0019825:108247-108266 None:intergenic 35.0%
GATGTTGTAAACTAATGGAG+TGG + tig0019825:108318-108337 None:intergenic 35.0%
ACAAAAAAGCAGGAGATACA+AGG + tig0019825:108606-108625 None:intergenic 35.0%
! TTTCAGCTTTTACTTTCCGT+GGG - tig0019825:108649-108668 Msa1376610:intron 35.0%
ATTAAGAAGAGAACGATGTG+AGG + tig0019825:108790-108809 None:intergenic 35.0%
!!! TCTCAAAAGCATTTTGGAAG+AGG + tig0019825:108822-108841 None:intergenic 35.0%
! GTTCTTCTTTTCGTTTCGAA+AGG - tig0019825:108920-108939 Msa1376610:intron 35.0%
TCGTATTCTCAGGTTACATA+TGG - tig0019825:109003-109022 Msa1376610:intron 35.0%
TGGATTTGACTCCTGTATAA+TGG - tig0019825:109023-109042 Msa1376610:intron 35.0%
GGATTTGACTCCTGTATAAT+GGG - tig0019825:109024-109043 Msa1376610:intron 35.0%
AAGTTCGTTACATTGTTCCA+AGG - tig0019825:109049-109068 Msa1376610:CDS 35.0%
! GGGTTATAGGGTATTTATTC+AGG - tig0019825:109203-109222 Msa1376610:intron 35.0%
AAGTTTGAATAGCTGTGCAA+AGG + tig0019825:109279-109298 None:intergenic 35.0%
CATCTACAGTGTGAGAATAA+CGG + tig0019825:109340-109359 None:intergenic 35.0%
GTTATTCTCACACTGTAGAT+GGG - tig0019825:109339-109358 Msa1376610:intron 35.0%
!! AAGAAAGCACTAAAAGCTGA+TGG - tig0019825:109438-109457 Msa1376610:CDS 35.0%
!! GTTACAGAAGTATTGTCTTC+GGG + tig0019825:109561-109580 None:intergenic 35.0%
TACTTCTGTAACTAAACCTG+AGG - tig0019825:109569-109588 Msa1376610:CDS 35.0%
ACTTCTGTAACTAAACCTGA+GGG - tig0019825:109570-109589 Msa1376610:CDS 35.0%
AAGTGTAGTAACTAGTCAGA+GGG + tig0019825:109853-109872 None:intergenic 35.0%
TAAGTGTAGTAACTAGTCAG+AGG + tig0019825:109854-109873 None:intergenic 35.0%
!! ACTGGGGAAGTATTACTATT+AGG + tig0019825:109910-109929 None:intergenic 35.0%
TTTGCAAAATCACAGCGATA+TGG + tig0019825:109935-109954 None:intergenic 35.0%
AGTAAAAGAAGAACGACGGT+TGG - tig0019825:105227-105246 Msa1376610:three_prime_UTR 40.0%
GATTGTTGCGATTTCACTTG+CGG - tig0019825:105367-105386 Msa1376610:three_prime_UTR 40.0%
! GAGCTTCGTAAAGTGACTTT+TGG + tig0019825:105439-105458 None:intergenic 40.0%
ACAAAAATATGTGTTCCGCC+TGG - tig0019825:105533-105552 Msa1376610:three_prime_UTR 40.0%
TAAGAGGTTCTTCTTCTGCA+AGG + tig0019825:105676-105695 None:intergenic 40.0%
! CCTCTTAAAACTGGTTTCTG+CGG - tig0019825:105689-105708 Msa1376610:CDS 40.0%
!!! TCCGTTCTCACTGTTGTTTT+TGG - tig0019825:105897-105916 Msa1376610:CDS 40.0%
!!! GTTCTCACTGTTGTTTTTGG+AGG - tig0019825:105900-105919 Msa1376610:CDS 40.0%
CTGGGAAGATTCTATTGCAA+AGG - tig0019825:106031-106050 Msa1376610:CDS 40.0%
! ATGGTTGCAGTTGGTATCTT+TGG - tig0019825:106962-106981 Msa1376610:intron 40.0%
!! TTGGTATCTTTGGCTCTTTG+TGG - tig0019825:106972-106991 Msa1376610:intron 40.0%
GATGTCTGCTTTACTCTTTC+AGG - tig0019825:107643-107662 Msa1376610:intron 40.0%
! TCTGCTTTACTCTTTCAGGT+TGG - tig0019825:107647-107666 Msa1376610:intron 40.0%
! CAGGTTGGCATACATATTTC+TGG - tig0019825:107662-107681 Msa1376610:intron 40.0%
TGGTATAGTATAGTTAGGGC+TGG - tig0019825:107952-107971 Msa1376610:intron 40.0%
!!! GTCTCGAACTATTTTCGAGT+AGG + tig0019825:107990-108009 None:intergenic 40.0%
! CTTTCAGCTTTTACTTTCCG+TGG - tig0019825:108648-108667 Msa1376610:intron 40.0%
AGCTACTTCATGAGCTAGTT+GGG + tig0019825:108698-108717 None:intergenic 40.0%
AACAACCAAGTCACCTTCTA+TGG + tig0019825:108734-108753 None:intergenic 40.0%
ATCTATCAGCTCGTATTCTC+AGG - tig0019825:108993-109012 Msa1376610:intron 40.0%
ACGAACTTGACCCATTATAC+AGG + tig0019825:109037-109056 None:intergenic 40.0%
ATTGTTCCAAGGCTCGTTAT+TGG - tig0019825:109060-109079 Msa1376610:CDS 40.0%
TTGTTCCAAGGCTCGTTATT+GGG - tig0019825:109061-109080 Msa1376610:CDS 40.0%
AATTACCCAATAACGAGCCT+TGG + tig0019825:109069-109088 None:intergenic 40.0%
ATGGAGGGACAAAAAACAAG+AGG + tig0019825:109179-109198 None:intergenic 40.0%
!!! TGTTTTTTGTCCCTCCATGT+TGG - tig0019825:109181-109200 Msa1376610:intron 40.0%
!!! GTTTTTTGTCCCTCCATGTT+GGG - tig0019825:109182-109201 Msa1376610:intron 40.0%
!!! TTTTTTGTCCCTCCATGTTG+GGG - tig0019825:109183-109202 Msa1376610:intron 40.0%
AATACCCTATAACCCCAACA+TGG + tig0019825:109198-109217 None:intergenic 40.0%
CGTTATTCTCACACTGTAGA+TGG - tig0019825:109338-109357 Msa1376610:intron 40.0%
! AGATGGGAAGTCACTTTAAG+AGG - tig0019825:109355-109374 Msa1376610:CDS 40.0%
! GATGGGAAGTCACTTTAAGA+GGG - tig0019825:109356-109375 Msa1376610:CDS 40.0%
ATTCAATGACCATGTGCAAG+TGG - tig0019825:109383-109402 Msa1376610:CDS 40.0%
TTCAATGACCATGTGCAAGT+GGG - tig0019825:109384-109403 Msa1376610:CDS 40.0%
CATGAGTATGAGAACTTCCT+TGG + tig0019825:109473-109492 None:intergenic 40.0%
AGGAAGTTCTCATACTCATG+AGG - tig0019825:109473-109492 Msa1376610:intron 40.0%
GGAAGTTCTCATACTCATGA+GGG - tig0019825:109474-109493 Msa1376610:intron 40.0%
! AGTAGTACTGGAATTCAGCT+TGG - tig0019825:109507-109526 Msa1376610:intron 40.0%
! GTAGTACTGGAATTCAGCTT+GGG - tig0019825:109508-109527 Msa1376610:intron 40.0%
CTTCTGTAACTAAACCTGAG+GGG - tig0019825:109571-109590 Msa1376610:CDS 40.0%
CCTAGATAAGCATACTCAGT+TGG + tig0019825:109598-109617 None:intergenic 40.0%
CCAACTGAGTATGCTTATCT+AGG - tig0019825:109595-109614 Msa1376610:CDS 40.0%
AACGCAATAGGATGCTTTGT+AGG - tig0019825:109634-109653 Msa1376610:CDS 40.0%
!!! TCTTATTTTCTTTGCCAGCG+TGG - tig0019825:109710-109729 Msa1376610:CDS 40.0%
ATTGTCTTTGTAGGACATGC+TGG - tig0019825:109739-109758 Msa1376610:CDS 40.0%
! AGAAATGAACGCAGCATTGA+TGG + tig0019825:109806-109825 None:intergenic 40.0%
! TATGGTTTTTGCTCTGTGCA+TGG - tig0019825:109884-109903 Msa1376610:CDS 40.0%
AAGTAAATGCACAAACAGGG+AGG + tig0019825:109986-110005 None:intergenic 40.0%
TAGCTTGAAGTTATGCCCAT+GGG + tig0019825:110033-110052 None:intergenic 40.0%
CATAACTTCAAGCTACTCCA+CGG - tig0019825:110038-110057 Msa1376610:five_prime_UTR 40.0%
AGAGAGAGAGAGAGAATGAG+TGG - tig0019825:105269-105288 Msa1376610:three_prime_UTR 45.0%
AACAATCACAGTGCATACGC+CGG + tig0019825:105354-105373 None:intergenic 45.0%
TCACATGCTTCCATGTAGAC+TGG - tig0019825:105565-105584 Msa1376610:three_prime_UTR 45.0%
TCTTTGTCCTCCAGTCTACA+TGG + tig0019825:105578-105597 None:intergenic 45.0%
ACCAGCTGGAAAAGAGAAAG+CGG + tig0019825:105621-105640 None:intergenic 45.0%
!!! CCGCAGAAACCAGTTTTAAG+AGG + tig0019825:105692-105711 None:intergenic 45.0%
!!! TTTATCAAGGGCCGCTTTTC+TGG - tig0019825:106195-106214 Msa1376610:intron 45.0%
CTTTGCCGAAACCAGAAAAG+CGG + tig0019825:106209-106228 None:intergenic 45.0%
GACTTGGCTTCATTACGGTA+AGG - tig0019825:106576-106595 Msa1376610:CDS 45.0%
! CTTTGGGTTTGTCTTGCAGT+GGG + tig0019825:106715-106734 None:intergenic 45.0%
! ACTTTGGGTTTGTCTTGCAG+TGG + tig0019825:106716-106735 None:intergenic 45.0%
TCAAGCAAGTTGTCGGCATA+AGG - tig0019825:106778-106797 Msa1376610:intron 45.0%
GAAAGGGCAACACTAGCTAA+AGG + tig0019825:108451-108470 None:intergenic 45.0%
CAGCTACTTCATGAGCTAGT+TGG + tig0019825:108699-108718 None:intergenic 45.0%
! GAAAAGCATGCAGCCATAGA+AGG - tig0019825:108718-108737 Msa1376610:CDS 45.0%
! GTTTCGAAAGGGCATACTGT+GGG - tig0019825:108932-108951 Msa1376610:intron 45.0%
! TTTCGAAAGGGCATACTGTG+GGG - tig0019825:108933-108952 Msa1376610:intron 45.0%
AACAACTGCGTAGAGTGGTA+GGG + tig0019825:109247-109266 None:intergenic 45.0%
TAACAACTGCGTAGAGTGGT+AGG + tig0019825:109248-109267 None:intergenic 45.0%
TGTGTAACAACTGCGTAGAG+TGG + tig0019825:109252-109271 None:intergenic 45.0%
ACTCTACGCAGTTGTTACAC+AGG - tig0019825:109251-109270 Msa1376610:intron 45.0%
GTATGAGAACTTCCTTGGCT+AGG + tig0019825:109468-109487 None:intergenic 45.0%
CATACTCATGAGGGTAGTAC+TGG - tig0019825:109483-109502 Msa1376610:intron 45.0%
!! GGTAGTACTGGTAGTAGTAC+TGG - tig0019825:109495-109514 Msa1376610:intron 45.0%
! TTGGGTCAGTTTTCCAGAAG+AGG - tig0019825:109526-109545 Msa1376610:intron 45.0%
! TGGGTCAGTTTTCCAGAAGA+GGG - tig0019825:109527-109546 Msa1376610:intron 45.0%
!! TGGCGAAGCATTGTCTTTGT+AGG - tig0019825:109730-109749 Msa1376610:CDS 45.0%
! TTTGTAGGACATGCTGGTCT+GGG - tig0019825:109745-109764 Msa1376610:CDS 45.0%
TAGTAACTAGTCAGAGGGTG+TGG + tig0019825:109848-109867 None:intergenic 45.0%
ATCACAGCGATATGGTGACT+GGG + tig0019825:109927-109946 None:intergenic 45.0%
AATCACAGCGATATGGTGAC+TGG + tig0019825:109928-109947 None:intergenic 45.0%
! TTTGGGGTAGCTTAACCCAT+GGG - tig0019825:110015-110034 Msa1376610:five_prime_UTR 45.0%
GTAGCTTGAAGTTATGCCCA+TGG + tig0019825:110034-110053 None:intergenic 45.0%
!! TAATAATAATGAATTATAAA+AGG + tig0019825:105739-105758 None:intergenic 5.0%
GAGAGAGAGAGAATGAGTGG+TGG - tig0019825:105272-105291 Msa1376610:three_prime_UTR 50.0%
AGAGAGAGAATGAGTGGTGG+AGG - tig0019825:105275-105294 Msa1376610:three_prime_UTR 50.0%
! AGAATGAGTGGTGGAGGTGA+AGG - tig0019825:105281-105300 Msa1376610:three_prime_UTR 50.0%
ACTTGAGTTCACACCGACGT+GGG - tig0019825:105322-105341 Msa1376610:three_prime_UTR 50.0%
TGTTGCGATTTCACTTGCGG+TGG - tig0019825:105370-105389 Msa1376610:three_prime_UTR 50.0%
GTGGAGCGTGTTCTTCACTA+TGG - tig0019825:105389-105408 Msa1376610:three_prime_UTR 50.0%
GAGCGTGTTCTTCACTATGG+AGG - tig0019825:105392-105411 Msa1376610:three_prime_UTR 50.0%
ATGTGACGCAATACACCAGG+CGG + tig0019825:105551-105570 None:intergenic 50.0%
AGCATGTGACGCAATACACC+AGG + tig0019825:105554-105573 None:intergenic 50.0%
CATGCTTCCATGTAGACTGG+AGG - tig0019825:105568-105587 Msa1376610:three_prime_UTR 50.0%
! TCCGCTTTCTCTTTTCCAGC+TGG - tig0019825:105617-105636 Msa1376610:three_prime_UTR 50.0%
CGTCTTGCAATTCTACCAGC+TGG + tig0019825:105635-105654 None:intergenic 50.0%
GAGGTTCTTCTTCTGCAAGG+AGG + tig0019825:105673-105692 None:intergenic 50.0%
TGAGAACGGAGAAAGTGACG+TGG + tig0019825:105887-105906 None:intergenic 50.0%
!!! AAGGGCCGCTTTTCTGGTTT+CGG - tig0019825:106201-106220 Msa1376610:CDS 50.0%
GGCAAAGACTCTGCTCTCAT+CGG - tig0019825:106222-106241 Msa1376610:CDS 50.0%
AAGACTCTGCTCTCATCGGT+TGG - tig0019825:106226-106245 Msa1376610:CDS 50.0%
GGTGATGAGTCAAGCATGAC+TGG - tig0019825:107521-107540 Msa1376610:intron 50.0%
GAGTCGAACTCAGTTCAGCT+CGG + tig0019825:108220-108239 None:intergenic 50.0%
AGCAGGAGATACAAGGTGCA+GGG + tig0019825:108599-108618 None:intergenic 50.0%
AAGCAGGAGATACAAGGTGC+AGG + tig0019825:108600-108619 None:intergenic 50.0%
TGCAGCCATAGAAGGTGACT+TGG - tig0019825:108726-108745 Msa1376610:CDS 50.0%
GGCAGACAACATCACGAGTA+TGG + tig0019825:108887-108906 None:intergenic 50.0%
! CGTTTCGAAAGGGCATACTG+TGG - tig0019825:108931-108950 Msa1376610:intron 50.0%
TCCCTCCATGTTGGGGTTAT+AGG - tig0019825:109190-109209 Msa1376610:intron 50.0%
CCCTATAACCCCAACATGGA+GGG + tig0019825:109194-109213 None:intergenic 50.0%
CCCTCCATGTTGGGGTTATA+GGG - tig0019825:109191-109210 Msa1376610:intron 50.0%
ACCCTATAACCCCAACATGG+AGG + tig0019825:109195-109214 None:intergenic 50.0%
CAACAATGCCCACTTGCACA+TGG + tig0019825:109395-109414 None:intergenic 50.0%
! CATGTGCAAGTGGGCATTGT+TGG - tig0019825:109393-109412 Msa1376610:CDS 50.0%
CTTTGTAGGACATGCTGGTC+TGG - tig0019825:109744-109763 Msa1376610:CDS 50.0%
CTGGTCTGGGTATAGGTATG+TGG - tig0019825:109758-109777 Msa1376610:CDS 50.0%
! TAACTAGTCAGAGGGTGTGG+TGG + tig0019825:109845-109864 None:intergenic 50.0%
TCACAGCGATATGGTGACTG+GGG + tig0019825:109926-109945 None:intergenic 50.0%
!! CTTTGGGGTAGCTTAACCCA+TGG - tig0019825:110014-110033 Msa1376610:five_prime_UTR 50.0%
! ATGAGTGGTGGAGGTGAAGG+AGG - tig0019825:105284-105303 Msa1376610:three_prime_UTR 55.0%
CACTTGAGTTCACACCGACG+TGG - tig0019825:105321-105340 Msa1376610:three_prime_UTR 55.0%
! AACTGGTTTCTGCGGTCGCA+AGG - tig0019825:105697-105716 Msa1376610:CDS 55.0%
! AGATACGTCAGTGGAAGCGC+TGG - tig0019825:106012-106031 Msa1376610:CDS 55.0%
!! GATACGTCAGTGGAAGCGCT+GGG - tig0019825:106013-106032 Msa1376610:CDS 55.0%
! CTCTGCTCTCATCGGTTGGT+TGG - tig0019825:106230-106249 Msa1376610:CDS 55.0%
ACTTTCCGTGGGAACGAAGC+TGG - tig0019825:108660-108679 Msa1376610:intron 55.0%
ATGCTCCAGCTTCGTTCCCA+CGG + tig0019825:108668-108687 None:intergenic 55.0%
! AAGGGCATACTGTGGGGTTG+AGG - tig0019825:108939-108958 Msa1376610:intron 55.0%
AGGGCATACTGTGGGGTTGA+GGG - tig0019825:108940-108959 Msa1376610:intron 55.0%
! TGCAAGTGGGCATTGTTGGC+TGG - tig0019825:109397-109416 Msa1376610:CDS 55.0%
! GCAAGTGGGCATTGTTGGCT+GGG - tig0019825:109398-109417 Msa1376610:CDS 55.0%
! CATTGTTGGCTGGGCAGAGA+AGG - tig0019825:109407-109426 Msa1376610:CDS 55.0%
GAGAACTTCCTTGGCTAGGC+TGG + tig0019825:109464-109483 None:intergenic 55.0%
CATACTCAGTTGGACCCCTC+AGG + tig0019825:109588-109607 None:intergenic 55.0%
AAGACAATGCTTCGCCACGC+TGG + tig0019825:109727-109746 None:intergenic 55.0%
! GGACATGCTGGTCTGGGTAT+AGG - tig0019825:109751-109770 Msa1376610:CDS 55.0%
AGGGTGTGGTGGCAGATCTT+AGG + tig0019825:109834-109853 None:intergenic 55.0%
ACACCGACGTGGGTAGTTGC+CGG - tig0019825:105332-105351 Msa1376610:three_prime_UTR 60.0%
ACGCCGGCAACTACCCACGT+CGG + tig0019825:105338-105357 None:intergenic 65.0%
GCTGATGGCCAGCCTAGCCA+AGG - tig0019825:109453-109472 Msa1376610:intron 65.0%
CGGGAGCTGATGCCCTCTTC+TGG + tig0019825:109542-109561 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019825 gene 105209 110070 105209 ID=Msa1376610;Name=Msa1376610
tig0019825 mRNA 105209 110070 105209 ID=Msa1376610-mRNA-1;Parent=Msa1376610;Name=Msa1376610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=75|0.90|0.91|1|0.72|0.83|12|468|519
tig0019825 exon 105209 105922 105209 ID=Msa1376610-mRNA-1:exon:5292;Parent=Msa1376610-mRNA-1
tig0019825 exon 106007 106067 106007 ID=Msa1376610-mRNA-1:exon:5291;Parent=Msa1376610-mRNA-1
tig0019825 exon 106197 106264 106197 ID=Msa1376610-mRNA-1:exon:5290;Parent=Msa1376610-mRNA-1
tig0019825 exon 106415 106624 106415 ID=Msa1376610-mRNA-1:exon:5289;Parent=Msa1376610-mRNA-1
tig0019825 exon 107574 107614 107574 ID=Msa1376610-mRNA-1:exon:5288;Parent=Msa1376610-mRNA-1
tig0019825 exon 108258 108307 108258 ID=Msa1376610-mRNA-1:exon:5287;Parent=Msa1376610-mRNA-1
tig0019825 exon 108468 108568 108468 ID=Msa1376610-mRNA-1:exon:5286;Parent=Msa1376610-mRNA-1
tig0019825 exon 108687 108761 108687 ID=Msa1376610-mRNA-1:exon:5285;Parent=Msa1376610-mRNA-1
tig0019825 exon 109028 109122 109028 ID=Msa1376610-mRNA-1:exon:5284;Parent=Msa1376610-mRNA-1
tig0019825 exon 109205 109265 109205 ID=Msa1376610-mRNA-1:exon:5283;Parent=Msa1376610-mRNA-1
tig0019825 exon 109350 109466 109350 ID=Msa1376610-mRNA-1:exon:5282;Parent=Msa1376610-mRNA-1
tig0019825 exon 109561 110070 109561 ID=Msa1376610-mRNA-1:exon:5281;Parent=Msa1376610-mRNA-1
tig0019825 five_prime_UTR 109996 110070 109996 ID=Msa1376610-mRNA-1:five_prime_utr;Parent=Msa1376610-mRNA-1
tig0019825 CDS 109561 109995 109561 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 109350 109466 109350 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 109205 109265 109205 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 109028 109122 109028 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 108687 108761 108687 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 108468 108568 108468 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 108258 108307 108258 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 107574 107614 107574 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 106415 106624 106415 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 106197 106264 106197 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 106007 106067 106007 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 CDS 105677 105922 105677 ID=Msa1376610-mRNA-1:cds;Parent=Msa1376610-mRNA-1
tig0019825 three_prime_UTR 105209 105676 105209 ID=Msa1376610-mRNA-1:three_prime_utr;Parent=Msa1376610-mRNA-1
Gene Sequence

>Msa1376610

ATGAGTGGTGGAGGTGAAGGAGGAGAAGAAGAGAACACACTTGAGTTCACACCGACGTGGGTAGTTGCCGGCGTATGCACTGTGATTGTTGCGATTTCACTTGCGGTGGAGCGTGTTCTTCACTATGGAGGAAAGTTCCTTAAAAGTAAAGACCAAAAGTCACTTTACGAAGCTCTCCAGAAGATCAAAGAAGAGTTGATGCTTTTGGGTTTCATTTCTCTTCTTCTTACTGTTTCTCAAAATCGTCTTACAAAAATATGTGTTCCGCCTGGTGTATTGCGTCACATGCTTCCATGTAGACTGGAGGACAAAGAATCACATTCGCATTCGCATTCCGCTTTCTCTTTTCCAGCTGGTAGAATTGCAAGACGTCTTCTCGCAGATCGCCTCCTTGCAGAAGAAGAACCTCTTAAAACTGGTTTCTGCGGTCGCAAGAACAAGGTTCCTTTATTATCTGTCGAAGCTTTGCATCACCTCCACATCTTCATTTTTGTTCTTGCTGTCGTCCACGTCACTTTCTCCGTTCTCACTGTTGTTTTTGGAGGCGCAAGAATACGTCAGTGGAAGCGCTGGGAAGATTCTATTGCAAAGGAGAATTATGATACTAACAAAGTTCTCAAACCAAAGTTGACTCATGTTCAACAGCATGAATTTATCAAGGGCCGCTTTTCTGGTTTCGGCAAAGACTCTGCTCTCATCGGTTGGTTGCAATCCTTTTTCAAGCAATTTTATGGCTCTGTGACAAAATCAGATTATGTCACATTAAGACTTGGCTTCATTACGACCCACTGCAAGACAAACCCAAAGTTTAATTTTCACAAGTACATGATTCGTGCCCTTGAAGATGATTTCAAGCAAGTTGTCGGCATAAGGCAAGTGCTTCCTTGGTATCTTTGGCTCTTTGTGGTCATCTTCTTGTTGTTAAATATCAATGGTTGGCATACATATTTCTGGATTGCTTTCGTTCCTGTTATTCTTTTACTTTCCGTGGGAACGAAGCTGGAGCATGTAATAACCCAACTAGCTCATGAAGTAGCTGAAAAGCATGCAGCCATAGAAGGTGACTTGGTTGTTCAACCATCAGATAATCACTTTTGGTTTCATCGGCCTCACATCGTTCTCTTCTTAATTCACTTTATCCTCTTCCAAAATGCTTTTGAGATAGCATTTTTTTTCTGGATATGGGTTACATATGGATTTGACTCCTGTATAATGGGTCAAGTTCGTTACATTGTTCCAAGGCTCGTTATTGGGGTATTTATTCAGGTACTATGTAGCTACAGCACCCTACCACTCTACGCAGTTGTTACACAGATGGGAAGTCACTTTAAGAGGGCAATATTCAATGACCATGTGCAAGTGGGCATTGTTGGCTGGGCAGAGAAGGTAAAAAAGAAGAAAGCACTAAAAGCTGATGGCCAGCCTAGCCAAGGAAGTTCTCATACTCATGAGGGTAGTACTGGTAGTAGTACTGGAATTCAGCTTGGGTCAGTTTTCCAGAAGAGGGCATCAGCTCCCGAAGACAATACTTCTGTAACTAAACCTGAGGGGTCCAACTGA

Protein sequence

>Msa1376610

MSGGGEGGEEENTLEFTPTWVVAGVCTVIVAISLAVERVLHYGGKFLKSKDQKSLYEALQKIKEELMLLGFISLLLTVSQNRLTKICVPPGVLRHMLPCRLEDKESHSHSHSAFSFPAGRIARRLLADRLLAEEEPLKTGFCGRKNKVPLLSVEALHHLHIFIFVLAVVHVTFSVLTVVFGGARIRQWKRWEDSIAKENYDTNKVLKPKLTHVQQHEFIKGRFSGFGKDSALIGWLQSFFKQFYGSVTKSDYVTLRLGFITTHCKTNPKFNFHKYMIRALEDDFKQVVGIRQVLPWYLWLFVVIFLLLNINGWHTYFWIAFVPVILLLSVGTKLEHVITQLAHEVAEKHAAIEGDLVVQPSDNHFWFHRPHIVLFLIHFILFQNAFEIAFFFWIWVTYGFDSCIMGQVRYIVPRLVIGVFIQVLCSYSTLPLYAVVTQMGSHFKRAIFNDHVQVGIVGWAEKVKKKKALKADGQPSQGSSHTHEGSTGSSTGIQLGSVFQKRASAPEDNTSVTKPEGSN*