AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365690 MtrunA17_Chr3g0145831 96.190 525 8 4 1 521 1 517 0.0 1016
Msa1365690 MtrunA17_Chr8g0337941 68.208 519 140 9 14 520 14 519 0.0 690
Msa1365690 MtrunA17_Chr8g0337931 64.343 502 158 8 30 520 15 506 0.0 634
Msa1365690 MtrunA17_Chr2g0291441 54.867 452 178 8 8 456 2 430 3.84e-157 456
Msa1365690 MtrunA17_Chr3g0144171 43.888 499 249 10 1 485 1 482 6.22e-134 399
Msa1365690 MtrunA17_Chr5g0407381 41.717 501 263 8 3 497 19 496 1.78e-127 383
Msa1365690 MtrunA17_Chr8g0370181 40.546 513 273 9 1 507 27 513 1.82e-126 381
Msa1365690 MtrunA17_Chr6g0462051 37.833 526 299 9 5 521 2 508 2.62e-118 360
Msa1365690 MtrunA17_Chr2g0326301 40.039 517 273 10 1 508 1 489 7.37e-118 359
Msa1365690 MtrunA17_Chr2g0317801 40.717 474 247 10 5 469 2 450 3.64e-114 348
Msa1365690 MtrunA17_Chr3g0144201 37.158 549 279 9 10 509 9 540 1.50e-111 342
Msa1365690 MtrunA17_Chr4g0040611 35.907 518 294 10 10 521 5 490 4.85e-105 325
Msa1365690 MtrunA17_Chr2g0277471 38.013 463 267 8 9 468 6 451 9.67e-90 285
Msa1365690 MtrunA17_Chr5g0405641 33.838 396 242 9 6 395 4 385 8.00e-51 178
Msa1365690 MtrunA17_Chr5g0405651 42.188 64 37 0 407 470 1 64 5.31e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365690 AT4G02600.2 65.693 548 139 10 1 521 1 526 0.0 689
Msa1365690 AT4G02600.1 65.693 548 139 10 1 521 1 526 0.0 689
Msa1365690 AT2G44110.2 58.008 512 188 8 1 511 1 486 0.0 595
Msa1365690 AT2G44110.1 58.203 512 186 9 1 511 1 485 0.0 591
Msa1365690 AT4G24250.1 54.772 482 191 7 13 484 8 472 6.20e-173 496
Msa1365690 AT4G24250.2 55.529 416 163 6 10 420 5 403 3.06e-148 431
Msa1365690 AT2G33670.1 44.181 464 238 6 14 477 17 459 9.84e-128 382
Msa1365690 AT1G61560.1 39.231 520 301 8 10 521 6 518 5.08e-123 373
Msa1365690 AT1G61560.4 39.530 511 291 9 10 511 6 507 2.88e-122 371
Msa1365690 AT2G17480.1 43.297 455 230 9 14 461 41 474 7.05e-122 370
Msa1365690 AT2G17430.1 41.213 478 255 7 2 479 24 475 1.47e-120 365
Msa1365690 AT1G42560.1 43.886 458 238 6 14 468 16 457 1.21e-119 360
Msa1365690 AT1G11310.1 39.808 520 295 9 10 520 6 516 1.41e-116 356
Msa1365690 AT1G61560.10 41.060 453 249 7 10 451 6 451 1.83e-116 352
Msa1365690 AT2G39200.1 39.877 489 277 7 10 492 4 481 2.26e-114 350
Msa1365690 AT5G53760.2 40.286 489 268 9 3 484 7 478 3.08e-113 347
Msa1365690 AT5G53760.1 40.286 489 268 9 3 484 7 478 3.08e-113 347
Msa1365690 AT1G26700.1 38.976 508 295 8 6 511 4 498 1.43e-110 340
Msa1365690 AT1G26700.2 38.976 508 295 8 6 511 4 498 1.43e-110 340
Msa1365690 AT5G65970.1 40.043 462 244 8 3 461 25 456 1.44e-110 340
Msa1365690 AT3G45290.1 38.428 458 259 6 13 469 18 453 1.36e-106 328
Msa1365690 AT1G61560.7 40.048 417 237 6 10 420 6 415 7.67e-104 318
Msa1365690 AT1G61560.9 40.048 417 237 6 10 420 6 415 7.67e-104 318
Msa1365690 AT1G61560.6 40.786 407 226 7 10 410 6 403 4.03e-103 315
Msa1365690 AT1G61560.8 40.786 407 226 7 10 410 6 403 4.03e-103 315
Msa1365690 AT1G61560.5 40.786 407 226 7 10 410 6 403 4.03e-103 315
Msa1365690 AT1G61560.2 37.797 463 273 8 67 521 1 456 8.69e-101 313
Msa1365690 AT1G61560.3 37.797 463 273 8 67 521 1 456 8.69e-101 313
Msa1365690 AT1G11310.3 38.877 463 265 9 67 520 1 454 1.08e-97 305
Msa1365690 AT1G11310.2 40.095 419 237 6 10 420 6 418 1.59e-97 301
Msa1365690 AT1G11000.1 38.186 474 250 10 9 468 6 450 2.36e-88 283
Msa1365690 AT1G11000.3 38.186 474 250 10 9 468 6 450 2.36e-88 283
Msa1365690 AT1G42560.2 42.667 375 196 6 14 385 16 374 5.06e-87 273
Msa1365690 AT5G65970.2 39.153 378 189 9 3 373 25 368 1.32e-81 262
Msa1365690 AT1G11000.2 38.208 424 225 10 9 421 6 403 5.40e-72 236

Find 143 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTTGGCATACATATTTC+TGG 0.151627 tig0018384:+23756 Msa1365690:intron
TCAACTCTTCTTTGATCTTC+TGG 0.174477 tig0018384:-21523 Msa1365690:intergenic
CAAAGAAGAGTTGATGCTTT+TGG 0.184648 tig0018384:+21532 Msa1365690:CDS
ATGCTATCTCAAAAGCATTT+TGG 0.206491 tig0018384:-24922 Msa1365690:intergenic
GCCATAAAATTGCTTGAAAA+AGG 0.208333 tig0018384:-22588 Msa1365690:intergenic
ATGGTTGCAGTTGGTATCTT+TGG 0.209055 tig0018384:+23027 Msa1365690:intron
GGGTTATAGGGTATTTATTC+AGG 0.269576 tig0018384:+25299 Msa1365690:intron
CGGGAGCTGATGCCCTCTTC+TGG 0.279234 tig0018384:-25635 Msa1365690:intergenic
TCACACAACATTACAAAATA+AGG 0.289610 tig0018384:-25757 Msa1365690:intergenic
TGGATTTGACTCCTGTATAA+TGG 0.294490 tig0018384:+25119 Msa1365690:CDS
ATTAAGGTACTTACAATAAC+AGG 0.304841 tig0018384:-23791 Msa1365690:intergenic
TGCAAGTGGGCATTGTTGGC+TGG 0.318793 tig0018384:+25493 Msa1365690:CDS
ATTGTTCCAAGGCTCGTTAT+TGG 0.341091 tig0018384:+25156 Msa1365690:CDS
AACCATCAGATAATCACTTT+TGG 0.341472 tig0018384:+24852 Msa1365690:CDS
AACAACCAAGTCACCTTCTA+TGG 0.342321 tig0018384:-24828 Msa1365690:intergenic
CTTTGTAGGACATGCTGGAC+TGG 0.346785 tig0018384:+25840 Msa1365690:three_prime_UTR
CAGCTACTTCATGAGCTAGT+TGG 0.351518 tig0018384:-24793 Msa1365690:intergenic
TTGTTCCAAGGCTCGTTATT+GGG 0.352604 tig0018384:+25157 Msa1365690:CDS
GTTAATGTTATAAACGCAAT+AGG 0.356028 tig0018384:+25718 Msa1365690:three_prime_UTR
GAAGAAGAACCTCTTAAAAC+TGG 0.362207 tig0018384:+21749 Msa1365690:CDS
AATGAAGTAAATGCACAAAC+AGG 0.366506 tig0018384:-26083 Msa1365690:intergenic
GAGCTTCGTAAAGTGACTTT+TGG 0.367340 tig0018384:-21499 Msa1365690:intergenic
GTTACAGAAGTATTGTCTTC+GGG 0.367463 tig0018384:-25654 Msa1365690:intergenic
AGAAATGAACGCAGCATTGA+TGG 0.368050 tig0018384:-25899 Msa1365690:intergenic
TTTGCAAAATCACAGCGATA+TGG 0.374052 tig0018384:-26028 Msa1365690:intergenic
TACACTTATCATCTGTCATA+TGG 0.374885 tig0018384:+25962 Msa1365690:three_prime_UTR
ACTTGTGAAAATTAAACTTT+GGG 0.379514 tig0018384:-22794 Msa1365690:intergenic
AGCTACTTCATGAGCTAGTT+GGG 0.384754 tig0018384:-24792 Msa1365690:intergenic
TACTTGTGAAAATTAAACTT+TGG 0.386200 tig0018384:-22795 Msa1365690:intergenic
GGATTTGACTCCTGTATAAT+GGG 0.399306 tig0018384:+25120 Msa1365690:CDS
ACTGGGGAAGTATTACTATT+AGG 0.400570 tig0018384:-26003 Msa1365690:intergenic
AGAATGAGTGGTGGAGGTGA+AGG 0.410123 tig0018384:+21344 Msa1365690:exon
CATGTGCAAGTGGGCATTGT+TGG 0.413610 tig0018384:+25489 Msa1365690:CDS
TGGCGAAGCATTGTCTTTGT+AGG 0.414966 tig0018384:+25826 Msa1365690:three_prime_UTR
TCAAGCAAGTTGTCGGCATA+AGG 0.417979 tig0018384:+22844 Msa1365690:CDS
TTCTTGTTGTTAAATATCAA+TGG 0.418291 tig0018384:+23065 Msa1365690:CDS
AGTTACAGAAGTATTGTCTT+CGG 0.421254 tig0018384:-25655 Msa1365690:intergenic
TCGTATTCTCAGGTTACATA+TGG 0.421389 tig0018384:+25099 Msa1365690:intron
ATTAAGACTTGGCTTCATTA+CGG 0.421485 tig0018384:+22637 Msa1365690:CDS
ACTTTCCGTGGGAACGAAGC+TGG 0.425162 tig0018384:+24757 Msa1365690:CDS
TTGGTATCTTTGGCTCTTTG+TGG 0.431225 tig0018384:+23037 Msa1365690:CDS
CCAACTGAGTATGCTTATCT+AGG 0.433871 tig0018384:+25691 Msa1365690:exon
GAAAAGCATGCAGCCATAGA+AGG 0.433917 tig0018384:+24815 Msa1365690:CDS
GGACATGCTGGACTGGGTAT+AGG 0.441101 tig0018384:+25847 Msa1365690:three_prime_UTR
AGATGGGAAGTCACTTTAAG+AGG 0.441814 tig0018384:+25451 Msa1365690:intron
AGGGTGTGGTGGCAGATCTT+AGG 0.442821 tig0018384:-25927 Msa1365690:intergenic
GTGGAGCGTGTTCTTCACTA+TGG 0.444422 tig0018384:+21452 Msa1365690:CDS
GAGAACTTCCTTGGCTAGGC+TGG 0.446072 tig0018384:-25557 Msa1365690:intergenic
CTTGCTTGAAATCATCTTCA+AGG 0.448142 tig0018384:-22830 Msa1365690:intergenic
GGTAGTACTGGTAGTAGTAC+TGG 0.448339 tig0018384:+25591 Msa1365690:CDS
AGAGAGAGAATGAGTGGTGG+AGG 0.449897 tig0018384:+21338 Msa1365690:exon
ATGAGTGGTGGAGGTGAAGG+AGG 0.453792 tig0018384:+21347 Msa1365690:CDS
AAAGCTTCGACAGATAATAA+AGG 0.455273 tig0018384:-21893 Msa1365690:intergenic
ACACCGACGTGGGTAGTTGC+CGG 0.455609 tig0018384:+21395 Msa1365690:CDS
GATGATTTCAAGCAAGTTGT+CGG 0.456829 tig0018384:+22837 Msa1365690:CDS
AACGCAATAGGATGCTTTGT+AGG 0.461397 tig0018384:+25730 Msa1365690:three_prime_UTR
TCAACAGCATGAATTTATCA+AGG 0.469213 tig0018384:+22253 Msa1365690:CDS
CATGAGTATGAGAACTTCCT+TGG 0.473751 tig0018384:-25566 Msa1365690:intergenic
AGATACGTCAGTGGAAGCGC+TGG 0.481697 tig0018384:+22083 Msa1365690:intron
GCAAGTGGGCATTGTTGGCT+GGG 0.482752 tig0018384:+25494 Msa1365690:CDS
TCTTTGTCCTCCAGTCTACA+TGG 0.483314 tig0018384:-21638 Msa1365690:intergenic
CTTTGGGTTTGTCTTGCAGT+GGG 0.484627 tig0018384:-22778 Msa1365690:intergenic
CATACTCATGAGGGTAGTAC+TGG 0.487612 tig0018384:+25579 Msa1365690:CDS
TTTGTAGGACATGCTGGACT+GGG 0.495776 tig0018384:+25841 Msa1365690:three_prime_UTR
CATACTCAGTTGGACCCCTC+AGG 0.496662 tig0018384:-25681 Msa1365690:intergenic
CATTGTTGGCTGGGCAGAGA+AGG 0.507997 tig0018384:+25503 Msa1365690:CDS
AACTGGTTTCTGCGGTCGCA+AGG 0.509634 tig0018384:+21766 Msa1365690:CDS
CTCTGCTCTCATCGGTTGGT+TGG 0.510427 tig0018384:+22301 Msa1365690:CDS
AATCACAGCGATATGGTGAC+TGG 0.511740 tig0018384:-26021 Msa1365690:intergenic
AGTAGTACTGGAATTCAGCT+TGG 0.515296 tig0018384:+25603 Msa1365690:CDS
GGCAAAGACTCTGCTCTCAT+CGG 0.516978 tig0018384:+22293 Msa1365690:CDS
CGTCTTGCAATTCTACCAGC+TGG 0.518487 tig0018384:-21701 Msa1365690:intergenic
ACGAACTTGACCCATTATAC+AGG 0.519596 tig0018384:-25130 Msa1365690:intergenic
ACTTTGGGTTTGTCTTGCAG+TGG 0.521242 tig0018384:-22779 Msa1365690:intergenic
ATTGTCTTTGTAGGACATGC+TGG 0.525451 tig0018384:+25835 Msa1365690:three_prime_UTR
TCACATGCTTCCATGTAGAC+TGG 0.535010 tig0018384:+21628 Msa1365690:CDS
AAGACTCTGCTCTCATCGGT+TGG 0.545020 tig0018384:+22297 Msa1365690:CDS
TGTTGAACATGAGTCAACTT+TGG 0.546220 tig0018384:-22236 Msa1365690:intergenic
GTAGTACTGGAATTCAGCTT+GGG 0.550167 tig0018384:+25604 Msa1365690:CDS
AAGTTCGTTACATTGTTCCA+AGG 0.552285 tig0018384:+25145 Msa1365690:CDS
TAAGAGGTTCTTCTTCTGCA+AGG 0.553608 tig0018384:-21742 Msa1365690:intergenic
CTTTGGGGTAGCTTAACCCA+TGG 0.555130 tig0018384:+26110 Msa1365690:three_prime_UTR
ATGCTCCAGCTTCGTTCCCA+CGG 0.556685 tig0018384:-24762 Msa1365690:intergenic
GATTATGTCACATTAAGACT+TGG 0.560197 tig0018384:+22626 Msa1365690:CDS
TTGCTTGAAATCATCTTCAA+GGG 0.563434 tig0018384:-22829 Msa1365690:intergenic
TGCAGCCATAGAAGGTGACT+TGG 0.563591 tig0018384:+24823 Msa1365690:CDS
ATCACAGCGATATGGTGACT+GGG 0.566071 tig0018384:-26020 Msa1365690:intergenic
TAGTAACTAGTCAGAGGGTG+TGG 0.569921 tig0018384:-25941 Msa1365690:intergenic
GTAGCTTGAAGTTATGCCCA+TGG 0.570673 tig0018384:-26127 Msa1365690:intergenic
GATTGTTGCGATTTCACTTG+CGG 0.578805 tig0018384:+21430 Msa1365690:CDS
GTATGAGAACTTCCTTGGCT+AGG 0.580640 tig0018384:-25561 Msa1365690:intergenic
ATTCAATGACCATGTGCAAG+TGG 0.582074 tig0018384:+25479 Msa1365690:CDS
CCTAGATAAGCATACTCAGT+TGG 0.583411 tig0018384:-25691 Msa1365690:intergenic
AGCATGTGACGCAATACACC+AGG 0.586001 tig0018384:-21614 Msa1365690:intergenic
AATTACCCAATAACGAGCCT+TGG 0.587733 tig0018384:-25162 Msa1365690:intergenic
CAACAGCATGAATTTATCAA+GGG 0.591378 tig0018384:+22254 Msa1365690:CDS
TAACAACTGCGTAGAGTGGT+AGG 0.592499 tig0018384:-25341 Msa1365690:intergenic
CTGGGAAGATTCTATTGCAA+AGG 0.593005 tig0018384:+22102 Msa1365690:CDS
ACTTCTGTAACTAAACCTGA+GGG 0.596923 tig0018384:+25666 Msa1365690:CDS
GCTGATGGCCAGCCTAGCCA+AGG 0.603904 tig0018384:+25549 Msa1365690:CDS
CTGGACTGGGTATAGGTATG+TGG 0.604351 tig0018384:+25854 Msa1365690:three_prime_UTR
GATGGGAAGTCACTTTAAGA+GGG 0.604640 tig0018384:+25452 Msa1365690:intron
TAGCTTGAAGTTATGCCCAT+GGG 0.604707 tig0018384:-26126 Msa1365690:intergenic
GGAAGTTCTCATACTCATGA+GGG 0.610453 tig0018384:+25570 Msa1365690:CDS
AGTAAAAGAAGAACGACGGT+TGG 0.611653 tig0018384:+21284 Msa1365690:five_prime_UTR
TTTGGGGTAGCTTAACCCAT+GGG 0.611762 tig0018384:+26111 Msa1365690:three_prime_UTR
CCTCTTAAAACTGGTTTCTG+CGG 0.613016 tig0018384:+21758 Msa1365690:CDS
GATACGTCAGTGGAAGCGCT+GGG 0.613910 tig0018384:+22084 Msa1365690:intron
TTCAATGACCATGTGCAAGT+GGG 0.616207 tig0018384:+25480 Msa1365690:CDS
GAGAATTATGATACTAACAA+AGG 0.617402 tig0018384:+22124 Msa1365690:CDS
AGGAAGTTCTCATACTCATG+AGG 0.617919 tig0018384:+25569 Msa1365690:CDS
AAGAAAGCACTAAAAGCTGA+TGG 0.617932 tig0018384:+25534 Msa1365690:CDS
CAACAATGCCCACTTGCACA+TGG 0.622950 tig0018384:-25488 Msa1365690:intergenic
TAACTAGTCAGAGGGTGTGG+TGG 0.624133 tig0018384:-25938 Msa1365690:intergenic
AAGACAATGCTTCGCCACGC+TGG 0.624136 tig0018384:-25820 Msa1365690:intergenic
AAGTGTAGTAACTAGTCAGA+GGG 0.624877 tig0018384:-25946 Msa1365690:intergenic
TACTTCTGTAACTAAACCTG+AGG 0.629767 tig0018384:+25665 Msa1365690:CDS
CTTTGCCGAAACCAGAAAAG+CGG 0.634483 tig0018384:-22277 Msa1365690:intergenic
ACCAGCTGGAAAAGAGAAAG+CGG 0.639460 tig0018384:-21687 Msa1365690:intergenic
CACTTGAGTTCACACCGACG+TGG 0.642618 tig0018384:+21384 Msa1365690:CDS
ATGAAGTAAATGCACAAACA+GGG 0.642673 tig0018384:-26082 Msa1365690:intergenic
AACAACTGCGTAGAGTGGTA+GGG 0.646677 tig0018384:-25340 Msa1365690:intergenic
AACAATCACAGTGCATACGC+CGG 0.646759 tig0018384:-21414 Msa1365690:intergenic
TAAGTGTAGTAACTAGTCAG+AGG 0.653617 tig0018384:-25947 Msa1365690:intergenic
AACCAAAAGTGATTATCTGA+TGG 0.656311 tig0018384:-24854 Msa1365690:intergenic
TGTGTAACAACTGCGTAGAG+TGG 0.658879 tig0018384:-25345 Msa1365690:intergenic
GAGGTTCTTCTTCTGCAAGG+AGG 0.660182 tig0018384:-21739 Msa1365690:intergenic
GCTACTCCACGGTTACACCA+TGG 0.661652 tig0018384:+26145 Msa1365690:three_prime_UTR
ATTAAGAAGAGAACGATGTG+AGG 0.663083 tig0018384:-24884 Msa1365690:intergenic
GAGCGTGTTCTTCACTATGG+AGG 0.672633 tig0018384:+21455 Msa1365690:CDS
ACTCTACGCAGTTGTTACAC+AGG 0.675035 tig0018384:+25347 Msa1365690:CDS
CATAACTTCAAGCTACTCCA+CGG 0.675292 tig0018384:+26134 Msa1365690:three_prime_UTR
TGTTGCGATTTCACTTGCGG+TGG 0.678387 tig0018384:+21433 Msa1365690:CDS
TAATAATATAGATACGTCAG+TGG 0.683998 tig0018384:+22074 Msa1365690:intron
TCACAGCGATATGGTGACTG+GGG 0.686278 tig0018384:-26019 Msa1365690:intergenic
CATGCTTCCATGTAGACTGG+AGG 0.690856 tig0018384:+21631 Msa1365690:CDS
ACTTGAGTTCACACCGACGT+GGG 0.706980 tig0018384:+21385 Msa1365690:CDS
AAGTAAATGCACAAACAGGG+AGG 0.713853 tig0018384:-26079 Msa1365690:intergenic
GAACAGTAAAAGAAGAACGA+CGG 0.720401 tig0018384:+21280 Msa1365690:five_prime_UTR
TGAGAACGGAGAAAGTGACG+TGG 0.720981 tig0018384:-21955 Msa1365690:intergenic
ATGTGACGCAATACACCAGG+CGG 0.723088 tig0018384:-21611 Msa1365690:intergenic
CTTCTGTAACTAAACCTGAG+GGG 0.738449 tig0018384:+25667 Msa1365690:CDS
ACGCCGGCAACTACCCACGT+CGG 0.774441 tig0018384:-21398 Msa1365680:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG - tig0018384:24027-24046 Msa1365690:intergenic 0.0%
!! TGTTATTATGATTTATTTAT+TGG - tig0018384:22731-22750 Msa1365690:intergenic 10.0%
!!! TATTTTTCTTTGTAAATTTA+TGG - tig0018384:23221-23240 Msa1365690:intergenic 10.0%
!! ATAAATTTACAAAGAAAAAT+AGG + tig0018384:23220-23239 Msa1365690:intron 10.0%
!! ATGAAAATAAACAATAAAAA+AGG - tig0018384:23827-23846 Msa1365690:intergenic 10.0%
!!! TTTTTTATTGTTTATTTTCA+TGG + tig0018384:23826-23845 Msa1365690:intron 10.0%
!!! TTTTTTTTTTTTACAGAACA+AGG + tig0018384:21868-21887 Msa1365690:intron 15.0%
!! GTATAAAATATTAGGAAAAA+TGG - tig0018384:22555-22574 Msa1365690:intergenic 15.0%
!!! TGAAAGAAGTATAAAATATT+AGG - tig0018384:22563-22582 Msa1365690:intergenic 15.0%
!!! CAATTCTAAATATATTTTCA+TGG + tig0018384:23008-23027 Msa1365690:intron 15.0%
!! TTATAAGAAGAAACATAAAT+AGG - tig0018384:23449-23468 Msa1365690:intergenic 15.0%
!! TAAACAATAATAAATGGTAT+AGG - tig0018384:23509-23528 Msa1365690:intergenic 15.0%
!! CATATGTAAACAATAATAAA+TGG - tig0018384:23515-23534 Msa1365690:intergenic 15.0%
!!! TATGATAAATTTTTGTGATT+GGG + tig0018384:23594-23613 Msa1365690:intron 15.0%
!! ATAAACAATAAAAAAGGAAA+AGG - tig0018384:23821-23840 Msa1365690:intergenic 15.0%
!! ATGTGCAATAATAAGTTATA+AGG - tig0018384:22156-22175 Msa1365690:intergenic 20.0%
!! TGAAAATGAATAATAATGTG+AGG - tig0018384:22368-22387 Msa1365690:intergenic 20.0%
!! AAAAACAAGATTGAAAAACA+GGG - tig0018384:22399-22418 Msa1365690:intergenic 20.0%
!! AAAAAACAAGATTGAAAAAC+AGG - tig0018384:22400-22419 Msa1365690:intergenic 20.0%
!! TATAGTGGTAATTAAAACTA+GGG - tig0018384:22424-22443 Msa1365690:intergenic 20.0%
!! CAGAAAATATATTGTTAATC+TGG - tig0018384:22471-22490 Msa1365690:intergenic 20.0%
!! ACTTGTGAAAATTAAACTTT+GGG - tig0018384:22797-22816 Msa1365690:intergenic 20.0%
!! TACTTGTGAAAATTAAACTT+TGG - tig0018384:22798-22817 Msa1365690:intergenic 20.0%
!!! TTTTTGACAAAATTAGTCTA+CGG - tig0018384:22879-22898 Msa1365690:intergenic 20.0%
!!! TTCTTGTTGTTAAATATCAA+TGG + tig0018384:23065-23084 Msa1365690:CDS 20.0%
!! TTAAAAACATAATGTGAGTA+TGG + tig0018384:23278-23297 Msa1365690:intron 20.0%
!! TAAAAACATAATGTGAGTAT+GGG + tig0018384:23279-23298 Msa1365690:intron 20.0%
!! TAACATTATCTGATCTAAAA+TGG + tig0018384:23466-23485 Msa1365690:intron 20.0%
!! TTTATTTAAACAACACTTTC+TGG + tig0018384:23571-23590 Msa1365690:intron 20.0%
!!! GTATGATAAATTTTTGTGAT+TGG + tig0018384:23593-23612 Msa1365690:intron 20.0%
!!! AAAAGGAAAAGGTTTTATTA+AGG - tig0018384:23810-23829 Msa1365690:intergenic 20.0%
!! AAGTTCAATGAGTTAATTAT+CGG - tig0018384:24115-24134 Msa1365690:intergenic 20.0%
!! AAGATAGTATACTATACTTA+GGG - tig0018384:24348-24367 Msa1365690:intergenic 20.0%
!! AAAGATAGTATACTATACTT+AGG - tig0018384:24349-24368 Msa1365690:intergenic 20.0%
!!! GAATGACATGTTATTTATAT+TGG + tig0018384:24442-24461 Msa1365690:intron 20.0%
!! AAAAAGAAGAACAAGTAAAA+TGG - tig0018384:25009-25028 Msa1365690:intergenic 20.0%
!!! ATTTACTTCATTTTCACTTT+GGG + tig0018384:26094-26113 Msa1365690:three_prime_UTR 20.0%
!!! ACTTTTGGTCTTTACTTTTA+AGG - tig0018384:21487-21506 Msa1365690:intergenic 25.0%
! TAATAATATAGATACGTCAG+TGG + tig0018384:22074-22093 Msa1365690:intron 25.0%
! GAGAATTATGATACTAACAA+AGG + tig0018384:22124-22143 Msa1365690:CDS 25.0%
! GTATAGTGGTAATTAAAACT+AGG - tig0018384:22425-22444 Msa1365690:intergenic 25.0%
! TGTATAAAAGAACTGTATAG+TGG - tig0018384:22439-22458 Msa1365690:intergenic 25.0%
!!! TCCTTTTTCAAGCAATTTTA+TGG + tig0018384:22587-22606 Msa1365690:CDS 25.0%
! AGATCATTTGACAACAAATA+TGG - tig0018384:22678-22697 Msa1365690:intergenic 25.0%
! CAAATGATCTCTCAATTAAT+TGG + tig0018384:22688-22707 Msa1365690:intron 25.0%
!!! CAATTAATTGGCTTTTTATC+TGG + tig0018384:22700-22719 Msa1365690:intron 25.0%
! ACAACAAAGAAATATACGAA+AGG - tig0018384:22755-22774 Msa1365690:intergenic 25.0%
!! AATTTCTCTCTCTATTGTTT+TGG - tig0018384:23260-23279 Msa1365690:intergenic 25.0%
! ATTTCAGTTCATCACTTAAT+TGG + tig0018384:23369-23388 Msa1365690:intron 25.0%
!! ATTAAGGTACTTACAATAAC+AGG - tig0018384:23794-23813 Msa1365690:intergenic 25.0%
! AAATTAAGACATGAGAGATT+TGG - tig0018384:23876-23895 Msa1365690:intergenic 25.0%
!! TCATGTCTTAATTTTGTGAA+AGG + tig0018384:23882-23901 Msa1365690:intron 25.0%
!! CATGTCTTAATTTTGTGAAA+GGG + tig0018384:23883-23902 Msa1365690:intron 25.0%
! AGTATACTATACTAGTGTAA+GGG - tig0018384:24000-24019 Msa1365690:intergenic 25.0%
! AAGTATACTATACTAGTGTA+AGG - tig0018384:24001-24020 Msa1365690:intergenic 25.0%
! AAAACTGGTATAGTATAGTT+AGG + tig0018384:24044-24063 Msa1365690:intron 25.0%
! AAACTGGTATAGTATAGTTA+GGG + tig0018384:24045-24064 Msa1365690:intron 25.0%
! GATAATTAACTCATTGAACT+TGG + tig0018384:24114-24133 Msa1365690:intron 25.0%
!! GACATGTTATTTATATTGGA+TGG + tig0018384:24446-24465 Msa1365690:intron 25.0%
! CCAAGGGTAATAATAATAAT+TGG - tig0018384:24502-24521 Msa1365690:intergenic 25.0%
! CCAATTATTATTATTACCCT+TGG + tig0018384:24499-24518 Msa1365690:intron 25.0%
! ATTATTATTACCCTTGGTTA+TGG + tig0018384:24505-24524 Msa1365690:intron 25.0%
!! TTTTCTATAACCATAACCAA+GGG - tig0018384:24518-24537 Msa1365690:intergenic 25.0%
! GAAACAATAACTGATAGAAA+GGG - tig0018384:24564-24583 Msa1365690:intergenic 25.0%
! AGAAACAATAACTGATAGAA+AGG - tig0018384:24565-24584 Msa1365690:intergenic 25.0%
! AAAACATGTCTGTGAAAATA+AGG - tig0018384:24594-24613 Msa1365690:intergenic 25.0%
!!! ATAATCACTTTTGGTTTCAT+CGG + tig0018384:24861-24880 Msa1365690:CDS 25.0%
!!! TTGAGATAGCATTTTTTTTC+TGG + tig0018384:24933-24952 Msa1365690:CDS 25.0%
!!! TAGCATTTTTTTTCTGGATA+TGG + tig0018384:24939-24958 Msa1365690:CDS 25.0%
!!! AGCATTTTTTTTCTGGATAT+GGG + tig0018384:24940-24959 Msa1365690:CDS 25.0%
!!! ATATGGGTAAGCAAATTTTT+TGG + tig0018384:24956-24975 Msa1365690:intron 25.0%
!!! TTCTTCTTTTTGTTTCGAAA+GGG + tig0018384:25018-25037 Msa1365690:intron 25.0%
! GTTAATGTTATAAACGCAAT+AGG + tig0018384:25718-25737 Msa1365690:three_prime_UTR 25.0%
! TCACACAACATTACAAAATA+AGG - tig0018384:25760-25779 Msa1365690:intergenic 25.0%
!! CATTTACTTCATTTTCACTT+TGG + tig0018384:26093-26112 Msa1365690:three_prime_UTR 25.0%
!! TTTACTTCATTTTCACTTTG+GGG + tig0018384:26095-26114 Msa1365690:three_prime_UTR 25.0%
!!! AAAGAAGAGTTGATGCTTTT+GGG + tig0018384:21533-21552 Msa1365690:CDS 30.0%
AGAACAAACAGATCAATGAA+TGG - tig0018384:21837-21856 Msa1365690:intergenic 30.0%
AAAGCTTCGACAGATAATAA+AGG - tig0018384:21896-21915 Msa1365690:intergenic 30.0%
CAAGAACAAAAATGAAGATG+TGG - tig0018384:21928-21947 Msa1365690:intergenic 30.0%
TCAACAGCATGAATTTATCA+AGG + tig0018384:22253-22272 Msa1365690:CDS 30.0%
CAACAGCATGAATTTATCAA+GGG + tig0018384:22254-22273 Msa1365690:CDS 30.0%
GGAAAAGTTAAAGAAAAGCA+AGG - tig0018384:22534-22553 Msa1365690:intergenic 30.0%
GCCATAAAATTGCTTGAAAA+AGG - tig0018384:22591-22610 Msa1365690:intergenic 30.0%
GATTATGTCACATTAAGACT+TGG + tig0018384:22626-22645 Msa1365690:CDS 30.0%
ATTAAGACTTGGCTTCATTA+CGG + tig0018384:22637-22656 Msa1365690:CDS 30.0%
!!! TTAATTGGCTTTTTATCTGG+CGG + tig0018384:22703-22722 Msa1365690:intron 30.0%
TTGCTTGAAATCATCTTCAA+GGG - tig0018384:22832-22851 Msa1365690:intergenic 30.0%
TCTCAGATATACATCAGTTT+AGG + tig0018384:22926-22945 Msa1365690:intron 30.0%
! TATATTTTCATGGTTGCAGT+TGG + tig0018384:23018-23037 Msa1365690:intron 30.0%
ATTTATGGTTGTCACACAAA+TGG - tig0018384:23206-23225 Msa1365690:intergenic 30.0%
!! AAGAAAAATAGGTATCGACA+CGG + tig0018384:23231-23250 Msa1365690:intron 30.0%
GAAGAAACATAAATAGGTTC+TGG - tig0018384:23443-23462 Msa1365690:intergenic 30.0%
TATAGGAATACCAACAACAA+TGG - tig0018384:23492-23511 Msa1365690:intergenic 30.0%
CCTTGAACACAAAACTAAAT+TGG - tig0018384:23646-23665 Msa1365690:intergenic 30.0%
!!! CCAATTTAGTTTTGTGTTCA+AGG + tig0018384:23643-23662 Msa1365690:intron 30.0%
! CTTAATTTTGTGAAAGGGAT+AGG + tig0018384:23888-23907 Msa1365690:intron 30.0%
!!! CTTTTTTTTTAGCTCGAACT+CGG - tig0018384:24240-24259 Msa1365690:intergenic 30.0%
ATGTTGTAAACTAATGGAGT+GGG - tig0018384:24414-24433 Msa1365690:intergenic 30.0%
AGTCAGATGTTGTAAACTAA+TGG - tig0018384:24420-24439 Msa1365690:intergenic 30.0%
! CTTTTCTATAACCATAACCA+AGG - tig0018384:24519-24538 Msa1365690:intergenic 30.0%
AGGGACAAGAAAAAAAATCA+AGG - tig0018384:24677-24696 Msa1365690:intergenic 30.0%
AAACTGAGAAACAAAAAAGC+AGG - tig0018384:24713-24732 Msa1365690:intergenic 30.0%
GAAAGTAAAAGCTGAAAGAA+CGG - tig0018384:24743-24762 Msa1365690:intergenic 30.0%
! AACCATCAGATAATCACTTT+TGG + tig0018384:24852-24871 Msa1365690:CDS 30.0%
AACCAAAAGTGATTATCTGA+TGG - tig0018384:24857-24876 Msa1365690:intergenic 30.0%
!!! ATGCTATCTCAAAAGCATTT+TGG - tig0018384:24925-24944 Msa1365690:intergenic 30.0%
AGAAGAACAAGTAAAATGGT+TGG - tig0018384:25005-25024 Msa1365690:intergenic 30.0%
!! GTTCTTCTTTTTGTTTCGAA+AGG + tig0018384:25017-25036 Msa1365690:intron 30.0%
AACAAGAGGAAAGATAAATG+AGG - tig0018384:25261-25280 Msa1365690:intergenic 30.0%
!! AGTTACAGAAGTATTGTCTT+CGG - tig0018384:25658-25677 Msa1365690:intergenic 30.0%
TACACTTATCATCTGTCATA+TGG + tig0018384:25962-25981 Msa1365690:three_prime_UTR 30.0%
ATGAAGTAAATGCACAAACA+GGG - tig0018384:26085-26104 Msa1365690:intergenic 30.0%
AATGAAGTAAATGCACAAAC+AGG - tig0018384:26086-26105 Msa1365690:intergenic 30.0%
GAACAGTAAAAGAAGAACGA+CGG + tig0018384:21280-21299 Msa1365690:five_prime_UTR 35.0%
TCAACTCTTCTTTGATCTTC+TGG - tig0018384:21526-21545 Msa1365690:intergenic 35.0%
!!! CAAAGAAGAGTTGATGCTTT+TGG + tig0018384:21532-21551 Msa1365690:CDS 35.0%
GAAGAAGAACCTCTTAAAAC+TGG + tig0018384:21749-21768 Msa1365690:CDS 35.0%
GAACAAAAATGAAGATGTGG+AGG - tig0018384:21925-21944 Msa1365690:intergenic 35.0%
TCCAAAAACAACAGTGAGAA+CGG - tig0018384:21972-21991 Msa1365690:intergenic 35.0%
TGTTGAACATGAGTCAACTT+TGG - tig0018384:22239-22258 Msa1365690:intergenic 35.0%
CTTGCTTGAAATCATCTTCA+AGG - tig0018384:22833-22852 Msa1365690:intergenic 35.0%
GATGATTTCAAGCAAGTTGT+CGG + tig0018384:22837-22856 Msa1365690:CDS 35.0%
CAGATATACATCAGTTTAGG+TGG + tig0018384:22929-22948 Msa1365690:intron 35.0%
! TCACTTAATTGGCTCTTACA+TGG + tig0018384:23380-23399 Msa1365690:intron 35.0%
! CACTTAATTGGCTCTTACAT+GGG + tig0018384:23381-23400 Msa1365690:intron 35.0%
CTTATGTAAAGTGACAAGTC+TGG + tig0018384:23414-23433 Msa1365690:intron 35.0%
! TCTAAAATGGCCATTGTTGT+TGG + tig0018384:23479-23498 Msa1365690:intron 35.0%
AGCTGAGTAAACTTAATGTG+TGG - tig0018384:23852-23871 Msa1365690:intergenic 35.0%
! GTACTGTTGAGATCATTTTC+TGG - tig0018384:23978-23997 Msa1365690:intergenic 35.0%
!!! GAACTATTTTCGAGTAGGTT+CGG - tig0018384:24082-24101 Msa1365690:intergenic 35.0%
CAACTCAAGTTCAACTCATT+TGG - tig0018384:24148-24167 Msa1365690:intergenic 35.0%
CGACTCGATAAGATTTGAAT+CGG - tig0018384:24292-24311 Msa1365690:intergenic 35.0%
TAGTATACTATACTTAGGGC+TGG - tig0018384:24344-24363 Msa1365690:intergenic 35.0%
GATGTTGTAAACTAATGGAG+TGG - tig0018384:24415-24434 Msa1365690:intergenic 35.0%
ACAAAAAAGCAGGAGATACA+AGG - tig0018384:24703-24722 Msa1365690:intergenic 35.0%
! TTTCAGCTTTTACTTTCCGT+GGG + tig0018384:24746-24765 Msa1365690:intron 35.0%
ATTAAGAAGAGAACGATGTG+AGG - tig0018384:24887-24906 Msa1365690:intergenic 35.0%
!!! TCTCAAAAGCATTTTGGAAG+AGG - tig0018384:24919-24938 Msa1365690:intergenic 35.0%
TCGTATTCTCAGGTTACATA+TGG + tig0018384:25099-25118 Msa1365690:intron 35.0%
TGGATTTGACTCCTGTATAA+TGG + tig0018384:25119-25138 Msa1365690:CDS 35.0%
GGATTTGACTCCTGTATAAT+GGG + tig0018384:25120-25139 Msa1365690:CDS 35.0%
AAGTTCGTTACATTGTTCCA+AGG + tig0018384:25145-25164 Msa1365690:CDS 35.0%
! GGGTTATAGGGTATTTATTC+AGG + tig0018384:25299-25318 Msa1365690:intron 35.0%
AAGTTTGAATAGCTGTGCAA+AGG - tig0018384:25375-25394 Msa1365690:intergenic 35.0%
CATCTACAGTGTGAGAATAA+CGG - tig0018384:25436-25455 Msa1365690:intergenic 35.0%
GTTATTCTCACACTGTAGAT+GGG + tig0018384:25435-25454 Msa1365690:intron 35.0%
!! AAGAAAGCACTAAAAGCTGA+TGG + tig0018384:25534-25553 Msa1365690:CDS 35.0%
!! GTTACAGAAGTATTGTCTTC+GGG - tig0018384:25657-25676 Msa1365690:intergenic 35.0%
TACTTCTGTAACTAAACCTG+AGG + tig0018384:25665-25684 Msa1365690:CDS 35.0%
ACTTCTGTAACTAAACCTGA+GGG + tig0018384:25666-25685 Msa1365690:CDS 35.0%
AAGTGTAGTAACTAGTCAGA+GGG - tig0018384:25949-25968 Msa1365690:intergenic 35.0%
TAAGTGTAGTAACTAGTCAG+AGG - tig0018384:25950-25969 Msa1365690:intergenic 35.0%
!! ACTGGGGAAGTATTACTATT+AGG - tig0018384:26006-26025 Msa1365690:intergenic 35.0%
TTTGCAAAATCACAGCGATA+TGG - tig0018384:26031-26050 Msa1365690:intergenic 35.0%
AGTAAAAGAAGAACGACGGT+TGG + tig0018384:21284-21303 Msa1365690:five_prime_UTR 40.0%
GATTGTTGCGATTTCACTTG+CGG + tig0018384:21430-21449 Msa1365690:CDS 40.0%
! GAGCTTCGTAAAGTGACTTT+TGG - tig0018384:21502-21521 Msa1365690:intergenic 40.0%
ACAAAAATATGTGTTCCGCC+TGG + tig0018384:21596-21615 Msa1365690:CDS 40.0%
TAAGAGGTTCTTCTTCTGCA+AGG - tig0018384:21745-21764 Msa1365690:intergenic 40.0%
! CCTCTTAAAACTGGTTTCTG+CGG + tig0018384:21758-21777 Msa1365690:CDS 40.0%
!!! TCCGTTCTCACTGTTGTTTT+TGG + tig0018384:21968-21987 Msa1365690:CDS 40.0%
!!! GTTCTCACTGTTGTTTTTGG+AGG + tig0018384:21971-21990 Msa1365690:CDS 40.0%
CTGGGAAGATTCTATTGCAA+AGG + tig0018384:22102-22121 Msa1365690:CDS 40.0%
! ATGGTTGCAGTTGGTATCTT+TGG + tig0018384:23027-23046 Msa1365690:intron 40.0%
!! TTGGTATCTTTGGCTCTTTG+TGG + tig0018384:23037-23056 Msa1365690:CDS 40.0%
GATGTCTGCTTTACTCTTTC+AGG + tig0018384:23737-23756 Msa1365690:intron 40.0%
! TCTGCTTTACTCTTTCAGGT+TGG + tig0018384:23741-23760 Msa1365690:intron 40.0%
! CAGGTTGGCATACATATTTC+TGG + tig0018384:23756-23775 Msa1365690:intron 40.0%
TGGTATAGTATAGTTAGGGC+TGG + tig0018384:24049-24068 Msa1365690:intron 40.0%
!!! GTCTCGAACTATTTTCGAGT+AGG - tig0018384:24087-24106 Msa1365690:intergenic 40.0%
! CTTTCAGCTTTTACTTTCCG+TGG + tig0018384:24745-24764 Msa1365690:intron 40.0%
AGCTACTTCATGAGCTAGTT+GGG - tig0018384:24795-24814 Msa1365690:intergenic 40.0%
AACAACCAAGTCACCTTCTA+TGG - tig0018384:24831-24850 Msa1365690:intergenic 40.0%
ATCTATCAGCTCGTATTCTC+AGG + tig0018384:25089-25108 Msa1365690:intron 40.0%
ACGAACTTGACCCATTATAC+AGG - tig0018384:25133-25152 Msa1365690:intergenic 40.0%
ATTGTTCCAAGGCTCGTTAT+TGG + tig0018384:25156-25175 Msa1365690:CDS 40.0%
TTGTTCCAAGGCTCGTTATT+GGG + tig0018384:25157-25176 Msa1365690:CDS 40.0%
AATTACCCAATAACGAGCCT+TGG - tig0018384:25165-25184 Msa1365690:intergenic 40.0%
ATGGAGGGACAAAAAACAAG+AGG - tig0018384:25275-25294 Msa1365690:intergenic 40.0%
!!! TGTTTTTTGTCCCTCCATGT+TGG + tig0018384:25277-25296 Msa1365690:intron 40.0%
!!! GTTTTTTGTCCCTCCATGTT+GGG + tig0018384:25278-25297 Msa1365690:intron 40.0%
!!! TTTTTTGTCCCTCCATGTTG+GGG + tig0018384:25279-25298 Msa1365690:intron 40.0%
AATACCCTATAACCCCAACA+TGG - tig0018384:25294-25313 Msa1365690:intergenic 40.0%
CGTTATTCTCACACTGTAGA+TGG + tig0018384:25434-25453 Msa1365690:intron 40.0%
! AGATGGGAAGTCACTTTAAG+AGG + tig0018384:25451-25470 Msa1365690:intron 40.0%
! GATGGGAAGTCACTTTAAGA+GGG + tig0018384:25452-25471 Msa1365690:intron 40.0%
ATTCAATGACCATGTGCAAG+TGG + tig0018384:25479-25498 Msa1365690:CDS 40.0%
TTCAATGACCATGTGCAAGT+GGG + tig0018384:25480-25499 Msa1365690:CDS 40.0%
CATGAGTATGAGAACTTCCT+TGG - tig0018384:25569-25588 Msa1365690:intergenic 40.0%
AGGAAGTTCTCATACTCATG+AGG + tig0018384:25569-25588 Msa1365690:CDS 40.0%
GGAAGTTCTCATACTCATGA+GGG + tig0018384:25570-25589 Msa1365690:CDS 40.0%
! AGTAGTACTGGAATTCAGCT+TGG + tig0018384:25603-25622 Msa1365690:CDS 40.0%
! GTAGTACTGGAATTCAGCTT+GGG + tig0018384:25604-25623 Msa1365690:CDS 40.0%
CTTCTGTAACTAAACCTGAG+GGG + tig0018384:25667-25686 Msa1365690:CDS 40.0%
CCTAGATAAGCATACTCAGT+TGG - tig0018384:25694-25713 Msa1365690:intergenic 40.0%
CCAACTGAGTATGCTTATCT+AGG + tig0018384:25691-25710 Msa1365690:exon 40.0%
AACGCAATAGGATGCTTTGT+AGG + tig0018384:25730-25749 Msa1365690:three_prime_UTR 40.0%
!!! TCTTATTTTCTTTGCCAGCG+TGG + tig0018384:25806-25825 Msa1365690:three_prime_UTR 40.0%
ATTGTCTTTGTAGGACATGC+TGG + tig0018384:25835-25854 Msa1365690:three_prime_UTR 40.0%
! AGAAATGAACGCAGCATTGA+TGG - tig0018384:25902-25921 Msa1365690:intergenic 40.0%
! TATGGTTTTTGCTCTGTGCA+TGG + tig0018384:25980-25999 Msa1365690:three_prime_UTR 40.0%
AAGTAAATGCACAAACAGGG+AGG - tig0018384:26082-26101 Msa1365690:intergenic 40.0%
TAGCTTGAAGTTATGCCCAT+GGG - tig0018384:26129-26148 Msa1365690:intergenic 40.0%
CATAACTTCAAGCTACTCCA+CGG + tig0018384:26134-26153 Msa1365690:three_prime_UTR 40.0%
AGAGAGAGAGAGAGAATGAG+TGG + tig0018384:21332-21351 Msa1365690:exon 45.0%
AACAATCACAGTGCATACGC+CGG - tig0018384:21417-21436 Msa1365690:intergenic 45.0%
TCACATGCTTCCATGTAGAC+TGG + tig0018384:21628-21647 Msa1365690:CDS 45.0%
TCTTTGTCCTCCAGTCTACA+TGG - tig0018384:21641-21660 Msa1365690:intergenic 45.0%
ACCAGCTGGAAAAGAGAAAG+CGG - tig0018384:21690-21709 Msa1365690:intergenic 45.0%
!!! CCGCAGAAACCAGTTTTAAG+AGG - tig0018384:21761-21780 Msa1365690:intergenic 45.0%
!!! TTTATCAAGGGCCGCTTTTC+TGG + tig0018384:22266-22285 Msa1365690:CDS 45.0%
CTTTGCCGAAACCAGAAAAG+CGG - tig0018384:22280-22299 Msa1365690:intergenic 45.0%
GACTTGGCTTCATTACGGTA+AGG + tig0018384:22642-22661 Msa1365690:intron 45.0%
! CTTTGGGTTTGTCTTGCAGT+GGG - tig0018384:22781-22800 Msa1365690:intergenic 45.0%
! ACTTTGGGTTTGTCTTGCAG+TGG - tig0018384:22782-22801 Msa1365690:intergenic 45.0%
TCAAGCAAGTTGTCGGCATA+AGG + tig0018384:22844-22863 Msa1365690:CDS 45.0%
GAGTCGAACTTAGTTCAGCT+CGG - tig0018384:24317-24336 Msa1365690:intergenic 45.0%
GAAAGGGCAACACTAGCAAA+AGG - tig0018384:24548-24567 Msa1365690:intergenic 45.0%
CAGCTACTTCATGAGCTAGT+TGG - tig0018384:24796-24815 Msa1365690:intergenic 45.0%
! GAAAAGCATGCAGCCATAGA+AGG + tig0018384:24815-24834 Msa1365690:CDS 45.0%
GGCAGACAACATCACAAGTA+TGG - tig0018384:24984-25003 Msa1365690:intergenic 45.0%
! TGTTTCGAAAGGGCATACTG+TGG + tig0018384:25028-25047 Msa1365690:intron 45.0%
! GTTTCGAAAGGGCATACTGT+GGG + tig0018384:25029-25048 Msa1365690:intron 45.0%
! TTTCGAAAGGGCATACTGTG+GGG + tig0018384:25030-25049 Msa1365690:intron 45.0%
AACAACTGCGTAGAGTGGTA+GGG - tig0018384:25343-25362 Msa1365690:intergenic 45.0%
TAACAACTGCGTAGAGTGGT+AGG - tig0018384:25344-25363 Msa1365690:intergenic 45.0%
TGTGTAACAACTGCGTAGAG+TGG - tig0018384:25348-25367 Msa1365690:intergenic 45.0%
ACTCTACGCAGTTGTTACAC+AGG + tig0018384:25347-25366 Msa1365690:CDS 45.0%
GTATGAGAACTTCCTTGGCT+AGG - tig0018384:25564-25583 Msa1365690:intergenic 45.0%
CATACTCATGAGGGTAGTAC+TGG + tig0018384:25579-25598 Msa1365690:CDS 45.0%
!! GGTAGTACTGGTAGTAGTAC+TGG + tig0018384:25591-25610 Msa1365690:CDS 45.0%
! TTGGGTCAGTTTTCCAGAAG+AGG + tig0018384:25622-25641 Msa1365690:CDS 45.0%
! TGGGTCAGTTTTCCAGAAGA+GGG + tig0018384:25623-25642 Msa1365690:CDS 45.0%
!! TGGCGAAGCATTGTCTTTGT+AGG + tig0018384:25826-25845 Msa1365690:three_prime_UTR 45.0%
TTTGTAGGACATGCTGGACT+GGG + tig0018384:25841-25860 Msa1365690:three_prime_UTR 45.0%
TAGTAACTAGTCAGAGGGTG+TGG - tig0018384:25944-25963 Msa1365690:intergenic 45.0%
ATCACAGCGATATGGTGACT+GGG - tig0018384:26023-26042 Msa1365690:intergenic 45.0%
AATCACAGCGATATGGTGAC+TGG - tig0018384:26024-26043 Msa1365690:intergenic 45.0%
! TTTGGGGTAGCTTAACCCAT+GGG + tig0018384:26111-26130 Msa1365690:three_prime_UTR 45.0%
GTAGCTTGAAGTTATGCCCA+TGG - tig0018384:26130-26149 Msa1365690:intergenic 45.0%
!! TAATAATAATGAATTATAAA+AGG - tig0018384:21808-21827 Msa1365690:intergenic 5.0%
!! TGTAAAAAAAAAAAAAAAAA+AGG - tig0018384:21863-21882 Msa1365690:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAAAC+TGG + tig0018384:24029-24048 Msa1365690:intron 5.0%
GAGAGAGAGAGAATGAGTGG+TGG + tig0018384:21335-21354 Msa1365690:exon 50.0%
AGAGAGAGAATGAGTGGTGG+AGG + tig0018384:21338-21357 Msa1365690:exon 50.0%
! AGAATGAGTGGTGGAGGTGA+AGG + tig0018384:21344-21363 Msa1365690:exon 50.0%
ACTTGAGTTCACACCGACGT+GGG + tig0018384:21385-21404 Msa1365690:CDS 50.0%
TGTTGCGATTTCACTTGCGG+TGG + tig0018384:21433-21452 Msa1365690:CDS 50.0%
GTGGAGCGTGTTCTTCACTA+TGG + tig0018384:21452-21471 Msa1365690:CDS 50.0%
GAGCGTGTTCTTCACTATGG+AGG + tig0018384:21455-21474 Msa1365690:CDS 50.0%
ATGTGACGCAATACACCAGG+CGG - tig0018384:21614-21633 Msa1365690:intergenic 50.0%
AGCATGTGACGCAATACACC+AGG - tig0018384:21617-21636 Msa1365690:intergenic 50.0%
CATGCTTCCATGTAGACTGG+AGG + tig0018384:21631-21650 Msa1365690:CDS 50.0%
! TCCGCTTTCTCTTTTCCAGC+TGG + tig0018384:21686-21705 Msa1365690:CDS 50.0%
CGTCTTGCAATTCTACCAGC+TGG - tig0018384:21704-21723 Msa1365690:intergenic 50.0%
GAGGTTCTTCTTCTGCAAGG+AGG - tig0018384:21742-21761 Msa1365690:intergenic 50.0%
TGAGAACGGAGAAAGTGACG+TGG - tig0018384:21958-21977 Msa1365690:intergenic 50.0%
!!! AAGGGCCGCTTTTCTGGTTT+CGG + tig0018384:22272-22291 Msa1365690:CDS 50.0%
GGCAAAGACTCTGCTCTCAT+CGG + tig0018384:22293-22312 Msa1365690:CDS 50.0%
AAGACTCTGCTCTCATCGGT+TGG + tig0018384:22297-22316 Msa1365690:CDS 50.0%
GGTGATGAGTCAAGCATGAC+TGG + tig0018384:23615-23634 Msa1365690:intron 50.0%
AGCAGGAGATACAAGGTGCA+GGG - tig0018384:24696-24715 Msa1365690:intergenic 50.0%
AAGCAGGAGATACAAGGTGC+AGG - tig0018384:24697-24716 Msa1365690:intergenic 50.0%
TGCAGCCATAGAAGGTGACT+TGG + tig0018384:24823-24842 Msa1365690:CDS 50.0%
TCCCTCCATGTTGGGGTTAT+AGG + tig0018384:25286-25305 Msa1365690:intron 50.0%
CCCTATAACCCCAACATGGA+GGG - tig0018384:25290-25309 Msa1365690:intergenic 50.0%
CCCTCCATGTTGGGGTTATA+GGG + tig0018384:25287-25306 Msa1365690:intron 50.0%
ACCCTATAACCCCAACATGG+AGG - tig0018384:25291-25310 Msa1365690:intergenic 50.0%
CAACAATGCCCACTTGCACA+TGG - tig0018384:25491-25510 Msa1365690:intergenic 50.0%
! CATGTGCAAGTGGGCATTGT+TGG + tig0018384:25489-25508 Msa1365690:CDS 50.0%
CTTTGTAGGACATGCTGGAC+TGG + tig0018384:25840-25859 Msa1365690:three_prime_UTR 50.0%
! CTGGACTGGGTATAGGTATG+TGG + tig0018384:25854-25873 Msa1365690:three_prime_UTR 50.0%
! TAACTAGTCAGAGGGTGTGG+TGG - tig0018384:25941-25960 Msa1365690:intergenic 50.0%
TCACAGCGATATGGTGACTG+GGG - tig0018384:26022-26041 Msa1365690:intergenic 50.0%
!! CTTTGGGGTAGCTTAACCCA+TGG + tig0018384:26110-26129 Msa1365690:three_prime_UTR 50.0%
! ATGAGTGGTGGAGGTGAAGG+AGG + tig0018384:21347-21366 Msa1365690:CDS 55.0%
CACTTGAGTTCACACCGACG+TGG + tig0018384:21384-21403 Msa1365690:CDS 55.0%
! AACTGGTTTCTGCGGTCGCA+AGG + tig0018384:21766-21785 Msa1365690:CDS 55.0%
! AGATACGTCAGTGGAAGCGC+TGG + tig0018384:22083-22102 Msa1365690:intron 55.0%
!! GATACGTCAGTGGAAGCGCT+GGG + tig0018384:22084-22103 Msa1365690:intron 55.0%
! CTCTGCTCTCATCGGTTGGT+TGG + tig0018384:22301-22320 Msa1365690:CDS 55.0%
ACTTTCCGTGGGAACGAAGC+TGG + tig0018384:24757-24776 Msa1365690:CDS 55.0%
ATGCTCCAGCTTCGTTCCCA+CGG - tig0018384:24765-24784 Msa1365690:intergenic 55.0%
! AAGGGCATACTGTGGGGTTG+AGG + tig0018384:25036-25055 Msa1365690:intron 55.0%
AGGGCATACTGTGGGGTTGA+GGG + tig0018384:25037-25056 Msa1365690:intron 55.0%
! TGCAAGTGGGCATTGTTGGC+TGG + tig0018384:25493-25512 Msa1365690:CDS 55.0%
! GCAAGTGGGCATTGTTGGCT+GGG + tig0018384:25494-25513 Msa1365690:CDS 55.0%
! CATTGTTGGCTGGGCAGAGA+AGG + tig0018384:25503-25522 Msa1365690:CDS 55.0%
GAGAACTTCCTTGGCTAGGC+TGG - tig0018384:25560-25579 Msa1365690:intergenic 55.0%
CATACTCAGTTGGACCCCTC+AGG - tig0018384:25684-25703 Msa1365690:intergenic 55.0%
AAGACAATGCTTCGCCACGC+TGG - tig0018384:25823-25842 Msa1365690:intergenic 55.0%
! GGACATGCTGGACTGGGTAT+AGG + tig0018384:25847-25866 Msa1365690:three_prime_UTR 55.0%
AGGGTGTGGTGGCAGATCTT+AGG - tig0018384:25930-25949 Msa1365690:intergenic 55.0%
ACACCGACGTGGGTAGTTGC+CGG + tig0018384:21395-21414 Msa1365690:CDS 60.0%
ACGCCGGCAACTACCCACGT+CGG - tig0018384:21401-21420 Msa1365690:intergenic 65.0%
GCTGATGGCCAGCCTAGCCA+AGG + tig0018384:25549-25568 Msa1365690:CDS 65.0%
CGGGAGCTGATGCCCTCTTC+TGG - tig0018384:25638-25657 Msa1365690:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0018384 gene 21266 26166 21266 ID=Msa1365690;Name=Msa1365690
tig0018384 mRNA 21266 26166 21266 ID=Msa1365690-mRNA-1;Parent=Msa1365690;Name=Msa1365690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=81|0.90|0.91|1|0.72|0.83|12|468|521
tig0018384 exon 21266 21787 21266 ID=Msa1365690-mRNA-1:exon:14746;Parent=Msa1365690-mRNA-1
tig0018384 exon 21884 22000 21884 ID=Msa1365690-mRNA-1:exon:14747;Parent=Msa1365690-mRNA-1
tig0018384 exon 22085 22145 22085 ID=Msa1365690-mRNA-1:exon:14748;Parent=Msa1365690-mRNA-1
tig0018384 exon 22228 22322 22228 ID=Msa1365690-mRNA-1:exon:14749;Parent=Msa1365690-mRNA-1
tig0018384 exon 22584 22658 22584 ID=Msa1365690-mRNA-1:exon:14750;Parent=Msa1365690-mRNA-1
tig0018384 exon 22777 22877 22777 ID=Msa1365690-mRNA-1:exon:14751;Parent=Msa1365690-mRNA-1
tig0018384 exon 23037 23086 23037 ID=Msa1365690-mRNA-1:exon:14752;Parent=Msa1365690-mRNA-1
tig0018384 exon 23759 23799 23759 ID=Msa1365690-mRNA-1:exon:14753;Parent=Msa1365690-mRNA-1
tig0018384 exon 24752 24961 24752 ID=Msa1365690-mRNA-1:exon:14754;Parent=Msa1365690-mRNA-1
tig0018384 exon 25111 25178 25111 ID=Msa1365690-mRNA-1:exon:14755;Parent=Msa1365690-mRNA-1
tig0018384 exon 25308 25368 25308 ID=Msa1365690-mRNA-1:exon:14756;Parent=Msa1365690-mRNA-1
tig0018384 exon 25453 26166 25453 ID=Msa1365690-mRNA-1:exon:14757;Parent=Msa1365690-mRNA-1
tig0018384 five_prime_UTR 21266 21346 21266 ID=Msa1365690-mRNA-1:five_prime_utr;Parent=Msa1365690-mRNA-1
tig0018384 CDS 21347 21787 21347 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 21884 22000 21884 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 22085 22145 22085 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 22228 22322 22228 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 22584 22658 22584 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 22777 22877 22777 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 23037 23086 23037 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 23759 23799 23759 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 24752 24961 24752 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 25111 25178 25111 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 25308 25368 25308 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 CDS 25453 25698 25453 ID=Msa1365690-mRNA-1:cds;Parent=Msa1365690-mRNA-1
tig0018384 three_prime_UTR 25699 26166 25699 ID=Msa1365690-mRNA-1:three_prime_utr;Parent=Msa1365690-mRNA-1
Gene Sequence

>Msa1365690

ATGAGTGGTGGAGGTGAAGGAGGAGAAGAAGAGAACACACTTGAGTTCACACCGACGTGGGTAGTTGCCGGCGTATGCACTGTGATTGTTGCGATTTCACTTGCGGTGGAGCGTGTTCTTCACTATGGAGGAAAGTTCCTTAAAAGTAAAGACCAAAAGTCACTTTACGAAGCTCTCCAGAAGATCAAAGAAGAGTTGATGCTTTTGGGTTTCATTTCTCTTCTTCTTACTGTTTCTCAAAATCGTCTTACAAAAATATGTGTTCCGCCTGGTGTATTGCGTCACATGCTTCCATGTAGACTGGAGGACAAAGAATCACATTCGCATTCGCATTCGCATTCCGCTTTCTCTTTTCCAGCTGGTAGAATTGCAAGACGTCTTCTCGCAGATCGCCTCCTTGCAGAAGAAGAACCTCTTAAAACTGGTTTCTGCGGTCGCAAGAACAAGGTTCCTTTATTATCTGTCGAAGCTTTGCATCACCTCCACATCTTCATTTTTGTTCTTGCTGTCGTCCACGTCACTTTCTCCGTTCTCACTGTTGTTTTTGGAGGCGCAAGAATACGTCAGTGGAAGCGCTGGGAAGATTCTATTGCAAAGGAGAATTATGATACTAACAAAGTTCTCAAACCAAAGTTGACTCATGTTCAACAGCATGAATTTATCAAGGGCCGCTTTTCTGGTTTCGGCAAAGACTCTGCTCTCATCGGTTGGTTGCAATCCTTTTTCAAGCAATTTTATGGCTCTGTGACAAAATCAGATTATGTCACATTAAGACTTGGCTTCATTACGACCCACTGCAAGACAAACCCAAAGTTTAATTTTCACAAGTACATGATTCGTGCCCTTGAAGATGATTTCAAGCAAGTTGTCGGCATAAGGCAAGTGCTTCCTTGGTATCTTTGGCTCTTTGTGGTCATCTTCTTGTTGTTAAATATCAATGGTTGGCATACATATTTCTGGATTGCTTTCGTTCCTGTTATTCTTTTACTTTCCGTGGGAACGAAGCTGGAGCATGTAATAACCCAACTAGCTCATGAAGTAGCTGAAAAGCATGCAGCCATAGAAGGTGACTTGGTTGTTCAACCATCAGATAATCACTTTTGGTTTCATCGGCCTCACATCGTTCTCTTCTTAATTCACTTTATCCTCTTCCAAAATGCTTTTGAGATAGCATTTTTTTTCTGGATATGGGTTACATATGGATTTGACTCCTGTATAATGGGTCAAGTTCGTTACATTGTTCCAAGGCTCGTTATTGGGGTATTTATTCAGGTACTATGTAGCTACAGCACCCTACCACTCTACGCAGTTGTTACACAGATGGGAAGTCACTTTAAGAGGGCAATATTCAATGACCATGTGCAAGTGGGCATTGTTGGCTGGGCAGAGAAGGTAAAAAAGAAGAAAGCACTAAAAGCTGATGGCCAGCCTAGCCAAGGAAGTTCTCATACTCATGAGGGTAGTACTGGTAGTAGTACTGGAATTCAGCTTGGGTCAGTTTTCCAGAAGAGGGCATCAGCTCCCGAAGACAATACTTCTGTAACTAAACCTGAGGGGTCCAACTGA

Protein sequence

>Msa1365690

MSGGGEGGEEENTLEFTPTWVVAGVCTVIVAISLAVERVLHYGGKFLKSKDQKSLYEALQKIKEELMLLGFISLLLTVSQNRLTKICVPPGVLRHMLPCRLEDKESHSHSHSHSAFSFPAGRIARRLLADRLLAEEEPLKTGFCGRKNKVPLLSVEALHHLHIFIFVLAVVHVTFSVLTVVFGGARIRQWKRWEDSIAKENYDTNKVLKPKLTHVQQHEFIKGRFSGFGKDSALIGWLQSFFKQFYGSVTKSDYVTLRLGFITTHCKTNPKFNFHKYMIRALEDDFKQVVGIRQVLPWYLWLFVVIFLLLNINGWHTYFWIAFVPVILLLSVGTKLEHVITQLAHEVAEKHAAIEGDLVVQPSDNHFWFHRPHIVLFLIHFILFQNAFEIAFFFWIWVTYGFDSCIMGQVRYIVPRLVIGVFIQVLCSYSTLPLYAVVTQMGSHFKRAIFNDHVQVGIVGWAEKVKKKKALKADGQPSQGSSHTHEGSTGSSTGIQLGSVFQKRASAPEDNTSVTKPEGSN*