AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1377240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377240 MtrunA17_Chr2g0322981 93.902 246 15 0 1 246 1 246 7.33e-166 457
Msa1377240 MtrunA17_Chr2g0323011 74.390 246 63 0 1 246 1 246 6.79e-135 379
Msa1377240 MtrunA17_Chr7g0234231 35.865 237 146 3 10 243 3 236 3.62e-49 162
Msa1377240 MtrunA17_Chr6g0474901 39.506 243 137 5 9 245 6 244 4.67e-47 166
Msa1377240 MtrunA17_Chr6g0474901 31.556 225 144 4 22 243 265 482 6.28e-31 120
Msa1377240 MtrunA17_Chr6g0474901 26.776 183 109 3 76 238 186 363 3.61e-11 62.8
Msa1377240 MtrunA17_Chr6g0475001 39.544 263 129 9 1 245 1 251 9.70e-46 162
Msa1377240 MtrunA17_Chr6g0475001 31.579 228 145 6 22 246 272 491 2.42e-29 115
Msa1377240 MtrunA17_Chr1g0206531 36.066 244 147 5 6 243 9 249 3.85e-45 160
Msa1377240 MtrunA17_Chr5g0428591 38.278 209 123 3 38 243 38 243 5.40e-44 149
Msa1377240 MtrunA17_Chr1g0206291 35.887 248 149 6 6 245 20 265 1.83e-43 154
Msa1377240 MtrunA17_Chr1g0206351 39.286 224 125 5 29 245 35 254 6.98e-43 154
Msa1377240 MtrunA17_Chr6g0474971 35.968 253 136 5 7 245 4 244 1.19e-41 144
Msa1377240 MtrunA17_Chr6g0475201 36.328 256 135 7 8 245 5 250 8.74e-40 145
Msa1377240 MtrunA17_Chr6g0475201 32.301 226 137 5 24 243 274 489 5.23e-31 120
Msa1377240 MtrunA17_Chr6g0475201 27.542 236 140 8 28 238 141 370 7.61e-12 64.7
Msa1377240 MtrunA17_Chr6g0475091 39.574 235 129 6 22 245 28 260 1.52e-39 145
Msa1377240 MtrunA17_Chr6g0475091 32.444 225 138 5 24 243 283 498 3.83e-31 121
Msa1377240 MtrunA17_Chr1g0205771 38.073 218 129 4 33 246 45 260 2.79e-39 144
Msa1377240 MtrunA17_Chr5g0428571 38.756 209 122 3 38 243 39 244 4.23e-39 142
Msa1377240 MtrunA17_Chr5g0394021 34.855 241 146 5 7 243 13 246 6.19e-39 142
Msa1377240 MtrunA17_Chr6g0474811 38.224 259 139 8 1 245 1 252 9.61e-39 143
Msa1377240 MtrunA17_Chr6g0474811 31.739 230 137 5 22 243 274 491 3.74e-30 118
Msa1377240 MtrunA17_Chr6g0474811 24.016 254 153 10 17 238 127 372 3.08e-11 63.2
Msa1377240 MtrunA17_Chr1g0206361 35.965 228 135 6 23 243 29 252 2.14e-38 141
Msa1377240 MtrunA17_Chr6g0475111 36.885 244 143 5 6 243 13 251 3.55e-38 141
Msa1377240 MtrunA17_Chr6g0475111 34.978 223 134 3 29 246 287 503 8.71e-34 129
Msa1377240 MtrunA17_Chr6g0474871 39.286 252 143 6 1 245 1 249 1.69e-37 139
Msa1377240 MtrunA17_Chr6g0474871 31.140 228 147 4 22 246 269 489 6.73e-32 123
Msa1377240 MtrunA17_Chr3g0081001 31.405 242 162 3 6 245 7 246 2.54e-37 138
Msa1377240 MtrunA17_Chr5g0428531 35.950 242 139 7 15 243 8 246 2.55e-37 132
Msa1377240 MtrunA17_Chr5g0394011 35.047 214 126 7 39 243 41 250 4.39e-37 137
Msa1377240 MtrunA17_Chr8g0347571 34.855 241 145 5 6 243 10 241 4.73e-37 138
Msa1377240 MtrunA17_Chr8g0347571 34.188 234 140 5 21 246 262 489 8.73e-32 123
Msa1377240 MtrunA17_Chr1g0154371 34.252 254 144 8 6 239 10 260 6.43e-37 137
Msa1377240 MtrunA17_Chr5g0393981 39.524 210 116 6 39 243 113 316 9.15e-37 137
Msa1377240 MtrunA17_Chr1g0154361 33.878 245 149 7 9 243 9 250 1.20e-36 131
Msa1377240 MtrunA17_Chr1g0154311 33.469 245 151 6 4 239 5 246 1.30e-36 136
Msa1377240 MtrunA17_Chr8g0354271 32.231 242 158 5 4 243 10 247 3.17e-35 132
Msa1377240 MtrunA17_Chr3g0081011 32.075 212 140 3 33 243 35 243 4.43e-35 132
Msa1377240 MtrunA17_Chr6g0475121 38.150 173 102 2 78 245 79 251 5.13e-35 131
Msa1377240 MtrunA17_Chr6g0475121 36.095 169 101 3 80 243 323 489 2.31e-30 118
Msa1377240 MtrunA17_Chr6g0475121 27.848 237 138 6 28 238 141 370 5.76e-14 70.9
Msa1377240 MtrunA17_Chr8g0354421 30.488 246 163 3 3 243 26 268 8.25e-35 131
Msa1377240 MtrunA17_Chr1g0206461 34.286 245 144 6 10 243 8 246 9.18e-35 131
Msa1377240 MtrunA17_Chr1g0206521 39.431 246 131 10 10 243 650 889 9.88e-35 131
Msa1377240 MtrunA17_Chr1g0206521 43.030 165 89 4 82 243 85 247 3.93e-34 129
Msa1377240 MtrunA17_Chr5g0394001 33.465 254 146 5 3 243 5 248 1.60e-34 130
Msa1377240 MtrunA17_Chr3g0081031 31.687 243 159 4 6 243 17 257 1.63e-34 130
Msa1377240 MtrunA17_Chr1g0206571 33.173 208 130 4 38 239 47 251 8.14e-34 124
Msa1377240 MtrunA17_Chr1g0154341 33.058 242 147 9 9 239 9 246 2.16e-33 122
Msa1377240 MtrunA17_Chr3g0081051 29.752 242 160 5 6 244 6 240 2.84e-33 121
Msa1377240 MtrunA17_Chr1g0206331 33.484 221 132 6 33 243 36 251 4.44e-33 126
Msa1377240 MtrunA17_Chr1g0206231 31.944 216 145 2 30 243 37 252 1.04e-32 125
Msa1377240 MtrunA17_Chr6g0474861 33.603 247 148 7 9 246 6 245 3.40e-32 123
Msa1377240 MtrunA17_Chr1g0206651 32.271 251 155 8 7 245 4 251 4.17e-32 118
Msa1377240 MtrunA17_Chr1g0206201 29.167 240 168 2 6 243 13 252 4.76e-32 118
Msa1377240 MtrunA17_Chr1g0154321 34.959 246 141 10 10 239 8 250 3.63e-31 121
Msa1377240 MtrunA17_Chr1g0206561 32.917 240 153 4 9 243 1 237 3.80e-31 120
Msa1377240 MtrunA17_Chr2g0280391 33.175 211 129 5 37 243 43 245 5.98e-31 115
Msa1377240 MtrunA17_Chr2g0280361 29.767 215 137 5 32 243 37 240 6.49e-31 115
Msa1377240 MtrunA17_Chr1g0206601 30.894 246 150 8 11 239 27 269 4.22e-30 113
Msa1377240 MtrunA17_Chr1g0206451 38.554 166 98 2 82 243 119 284 9.63e-30 117
Msa1377240 MtrunA17_Chr8g0354411 25.806 217 159 1 29 243 30 246 1.30e-29 112
Msa1377240 MtrunA17_Chr1g0154351 34.135 208 127 6 39 239 42 246 9.14e-29 114
Msa1377240 MtrunA17_Chr8g0354441 27.459 244 168 3 3 239 9 250 2.06e-28 113
Msa1377240 MtrunA17_Chr1g0206251 31.780 236 140 8 20 243 282 508 8.09e-28 110
Msa1377240 MtrunA17_Chr1g0206251 31.472 197 122 4 60 245 71 265 1.43e-20 90.1
Msa1377240 MtrunA17_Chr8g0354351 29.565 230 153 5 14 239 13 237 1.43e-27 110
Msa1377240 MtrunA17_Chr3g0119041 31.641 256 153 5 11 246 10 263 3.87e-27 109
Msa1377240 MtrunA17_Chr7g0230381 28.692 237 155 5 5 238 16 241 3.36e-25 100
Msa1377240 MtrunA17_Chr8g0354341 29.907 214 145 4 29 239 29 240 4.85e-25 99.8
Msa1377240 MtrunA17_Chr8g0354281 27.854 219 151 4 29 243 30 245 6.64e-25 102
Msa1377240 MtrunA17_Chr8g0354431 25.301 249 178 3 3 246 4 249 2.88e-24 101
Msa1377240 MtrunA17_Chr3g0110311 27.966 236 152 6 3 238 4 221 1.06e-23 96.3
Msa1377240 MtrunA17_Chr1g0206401 31.111 225 136 9 30 243 29 245 2.07e-22 95.9
Msa1377240 MtrunA17_Chr2g0280381 31.818 198 123 6 49 243 51 239 1.09e-21 90.9
Msa1377240 MtrunA17_Chr5g0426941 27.083 240 165 5 11 243 3 239 1.27e-20 90.5
Msa1377240 MtrunA17_Chr5g0434531 28.085 235 157 5 5 238 3 226 3.54e-20 87.0
Msa1377240 MtrunA17_Chr1g0206381 28.070 228 147 8 30 245 30 252 1.59e-19 85.9
Msa1377240 MtrunA17_Chr1g0206421 35.099 151 83 5 82 217 11 161 2.55e-19 86.7
Msa1377240 MtrunA17_Chr5g0428601 36.066 122 75 2 124 243 1 121 2.50e-17 80.1
Msa1377240 MtrunA17_Chr1g0206581 25.926 216 141 6 38 238 61 272 8.22e-16 75.1
Msa1377240 MtrunA17_Chr6g0474961 39.130 92 55 1 156 246 17 108 2.64e-15 73.2
Msa1377240 MtrunA17_Chr8g0391511 27.317 205 132 6 39 238 42 234 1.70e-14 71.2
Msa1377240 MtrunA17_Chr7g0226901 24.176 182 128 4 65 246 67 238 1.26e-13 68.6
Msa1377240 MtrunA17_Chr3g0082951 36.275 102 62 2 33 133 122 221 6.80e-13 65.9
Msa1377240 MtrunA17_Chr1g0206171 39.773 88 49 3 156 243 19 102 9.58e-13 63.5
Msa1377240 MtrunA17_Chr6g0477591 31.579 76 52 0 80 155 2 77 3.54e-12 60.8
Msa1377240 MtrunA17_Chr3g0109411 23.464 179 123 3 81 246 80 257 1.26e-11 63.9
Msa1377240 MtrunA17_Chr7g0262011 24.623 199 141 2 44 242 116 305 9.48e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377240 AT3G22060.1 57.273 220 87 4 29 245 35 250 1.05e-83 250
Msa1377240 AT3G58310.1 43.644 236 121 5 17 244 23 254 7.05e-58 185
Msa1377240 AT5G48540.1 37.083 240 145 4 8 243 3 240 1.11e-49 164
Msa1377240 AT3G21990.1 40.611 229 117 6 29 245 34 255 2.04e-48 160
Msa1377240 AT4G05200.1 36.179 246 147 5 8 246 8 250 5.20e-48 168
Msa1377240 AT4G20640.1 40.611 229 117 6 29 245 34 255 5.31e-48 159
Msa1377240 AT4G20630.1 40.611 229 117 6 29 245 34 255 5.31e-48 159
Msa1377240 AT4G20580.1 40.611 229 117 6 29 245 34 255 5.31e-48 159
Msa1377240 AT4G20600.1 40.611 229 117 6 29 245 34 255 5.31e-48 159
Msa1377240 AT4G20620.1 40.611 229 117 6 29 245 34 255 5.31e-48 159
Msa1377240 AT4G20610.1 40.611 229 117 6 29 245 34 255 5.31e-48 159
Msa1377240 AT4G20590.1 40.611 229 117 6 29 245 34 255 5.31e-48 159
Msa1377240 AT4G20670.1 40.611 229 117 6 29 245 34 255 5.46e-48 159
Msa1377240 AT4G20570.1 40.611 229 117 6 29 245 48 269 5.53e-48 160
Msa1377240 AT4G20560.1 40.611 229 117 6 29 245 48 269 5.53e-48 160
Msa1377240 AT4G20540.1 40.611 229 117 6 29 245 48 269 5.53e-48 160
Msa1377240 AT4G20645.1 40.611 229 117 6 29 245 48 269 5.53e-48 160
Msa1377240 AT4G20530.1 40.611 229 117 6 29 245 48 269 5.53e-48 160
Msa1377240 AT4G20550.1 40.611 229 117 6 29 245 48 269 5.53e-48 160
Msa1377240 AT4G05200.2 36.179 246 147 5 8 246 26 268 6.70e-48 168
Msa1377240 AT2G31620.1 41.410 227 117 8 29 245 34 254 1.85e-44 150
Msa1377240 AT3G21960.1 38.053 226 127 5 29 245 40 261 7.06e-43 146
Msa1377240 AT4G20680.1 40.948 232 117 10 29 245 40 266 1.05e-42 146
Msa1377240 AT3G22000.1 40.517 232 118 10 29 245 40 266 1.02e-41 144
Msa1377240 AT3G22050.1 42.353 170 86 5 86 246 92 258 1.16e-38 135
Msa1377240 AT3G22040.1 35.593 236 118 10 29 245 36 256 2.70e-37 132
Msa1377240 AT3G22010.1 35.965 228 130 8 29 245 40 262 5.11e-37 131
Msa1377240 AT4G23180.3 36.207 232 124 8 27 246 36 255 1.50e-35 132
Msa1377240 AT4G23180.2 35.088 228 132 6 27 246 36 255 3.34e-35 132
Msa1377240 AT3G21940.2 39.326 178 87 3 88 245 3 179 3.54e-35 124
Msa1377240 AT1G61750.1 34.389 221 138 3 24 239 23 241 4.41e-35 128
Msa1377240 AT4G23170.1 33.047 233 141 6 23 246 21 247 4.69e-35 126
Msa1377240 AT4G23180.1 35.088 228 132 6 27 246 36 255 5.45e-35 132
Msa1377240 AT3G21940.1 32.727 275 145 8 1 245 10 274 7.56e-35 126
Msa1377240 AT3G21970.1 31.801 261 159 9 2 246 7 264 1.40e-34 125
Msa1377240 AT4G38830.1 34.685 222 136 5 28 243 26 244 4.11e-34 129
Msa1377240 AT3G21910.1 32.035 231 138 7 29 244 40 266 1.55e-32 120
Msa1377240 AT4G21230.1 36.916 214 114 7 38 243 40 240 6.69e-32 123
Msa1377240 AT3G21900.2 31.496 254 143 9 6 244 11 248 3.75e-31 115
Msa1377240 AT4G23230.1 33.632 223 133 6 31 246 29 243 1.13e-30 119
Msa1377240 AT4G23130.3 36.726 226 130 7 27 246 28 246 2.45e-30 118
Msa1377240 AT4G23130.1 36.726 226 130 7 27 246 28 246 2.59e-30 119
Msa1377240 AT4G23130.2 36.726 226 130 7 27 246 28 246 2.80e-30 119
Msa1377240 AT4G23280.3 32.479 234 140 7 22 246 20 244 6.26e-30 117
Msa1377240 AT4G23160.1 31.250 224 143 4 29 246 46 264 6.76e-30 117
Msa1377240 AT4G23160.3 30.603 232 148 5 23 246 618 844 7.04e-30 117
Msa1377240 AT4G23160.2 30.603 232 148 5 23 246 618 844 7.04e-30 117
Msa1377240 AT4G23280.2 32.479 234 140 7 22 246 20 244 7.88e-30 117
Msa1377240 AT4G23280.1 32.479 234 140 7 22 246 20 244 7.91e-30 117
Msa1377240 AT4G23150.1 33.333 234 139 7 23 246 21 247 1.57e-29 116
Msa1377240 AT1G63550.1 29.018 224 151 4 21 239 24 244 1.77e-29 113
Msa1377240 AT4G21410.2 31.034 232 152 6 17 243 21 249 4.88e-29 114
Msa1377240 AT4G21410.3 31.034 232 152 6 17 243 21 249 6.93e-29 114
Msa1377240 AT3G29040.1 32.468 231 143 7 27 246 27 255 7.48e-29 110
Msa1377240 AT3G21930.1 32.911 237 130 9 29 244 40 268 2.21e-28 109
Msa1377240 AT3G21920.1 32.911 237 130 9 29 244 40 268 2.63e-28 108
Msa1377240 AT3G21920.2 32.911 237 130 9 29 244 62 290 3.99e-28 108
Msa1377240 AT4G23270.2 32.549 255 141 7 8 246 3 242 4.52e-28 112
Msa1377240 AT4G23270.1 32.549 255 141 7 8 246 3 242 4.52e-28 112
Msa1377240 AT4G23270.3 32.549 255 141 7 8 246 3 242 4.58e-28 112
Msa1377240 AT3G45860.1 33.074 257 140 8 12 246 3 249 9.44e-28 111
Msa1377240 AT3G22030.1 38.621 145 77 5 110 245 111 252 1.60e-27 106
Msa1377240 AT3G21900.1 30.315 254 138 9 6 244 11 240 1.85e-27 106
Msa1377240 AT4G23140.1 31.760 233 144 6 23 246 22 248 5.40e-27 109
Msa1377240 AT4G23140.2 31.760 233 144 6 23 246 22 248 6.10e-27 109
Msa1377240 AT3G21980.1 31.858 226 110 6 29 245 34 224 1.75e-26 102
Msa1377240 AT1G63590.1 28.340 247 165 5 2 240 3 245 7.62e-26 102
Msa1377240 AT4G23310.1 28.634 227 152 4 18 240 131 351 1.08e-25 105
Msa1377240 AT4G23310.1 28.000 225 147 7 23 238 21 239 5.57e-15 74.3
Msa1377240 AT4G23310.2 28.319 226 154 4 18 240 131 351 1.14e-25 105
Msa1377240 AT4G23310.2 28.000 225 147 7 23 238 21 239 6.64e-15 74.3
Msa1377240 AT4G21400.3 28.959 221 150 5 28 243 33 251 1.33e-25 105
Msa1377240 AT4G21400.6 28.959 221 150 5 28 243 33 251 1.65e-25 104
Msa1377240 AT4G21400.4 28.959 221 150 5 28 243 33 251 1.65e-25 104
Msa1377240 AT4G21400.5 28.959 221 150 5 28 243 33 251 1.65e-25 104
Msa1377240 AT4G21400.2 28.959 221 150 5 28 243 33 251 2.32e-25 104
Msa1377240 AT4G21400.1 28.959 221 150 5 28 243 33 251 2.44e-25 104
Msa1377240 AT4G23220.1 28.767 219 145 5 33 243 25 240 2.78e-25 104
Msa1377240 AT3G29050.2 30.000 250 128 9 29 244 38 274 4.63e-25 100
Msa1377240 AT4G11460.1 26.255 259 166 7 1 243 1 250 5.88e-25 103
Msa1377240 AT4G23200.2 28.700 223 144 6 33 243 24 243 6.13e-25 103
Msa1377240 AT4G11460.3 26.255 259 166 7 1 243 1 250 6.46e-25 103
Msa1377240 AT4G23200.1 28.700 223 144 6 33 243 24 243 8.21e-25 103
Msa1377240 AT3G60720.2 29.187 209 132 3 35 238 35 232 1.21e-24 98.6
Msa1377240 AT3G60720.1 29.187 209 132 3 35 238 35 232 2.01e-24 98.6
Msa1377240 AT3G60720.3 29.187 209 132 3 35 238 35 232 2.27e-24 99.0
Msa1377240 AT1G63600.1 29.108 213 138 3 36 239 44 252 5.87e-24 98.6
Msa1377240 AT4G21400.7 30.588 170 114 3 78 243 56 225 7.83e-24 100
Msa1377240 AT1G63570.3 25.726 241 171 3 6 241 5 242 2.13e-23 96.3
Msa1377240 AT1G63570.1 25.726 241 171 3 6 241 5 242 2.13e-23 96.3
Msa1377240 AT1G63570.2 25.726 241 171 3 6 241 58 295 4.37e-23 96.3
Msa1377240 AT4G11521.1 28.829 222 132 6 39 244 31 242 4.91e-23 94.7
Msa1377240 AT1G70690.1 28.440 218 135 6 29 240 32 234 1.65e-22 94.0
Msa1377240 AT5G37660.2 28.436 211 139 4 29 239 38 236 7.88e-21 89.4
Msa1377240 AT5G37660.1 28.436 211 139 4 29 239 38 236 9.25e-21 89.0
Msa1377240 AT2G01660.2 28.311 219 138 5 27 239 25 230 1.92e-20 87.8
Msa1377240 AT4G11460.2 28.000 175 112 3 83 243 1 175 2.65e-20 90.1
Msa1377240 AT2G01660.3 27.982 218 138 5 27 238 25 229 5.15e-20 87.0
Msa1377240 AT2G01660.1 27.982 218 138 5 27 238 25 229 5.49e-20 87.0
Msa1377240 AT4G00970.2 31.081 222 141 8 24 239 41 256 2.51e-19 87.0
Msa1377240 AT4G00970.1 31.081 222 141 8 24 239 41 256 2.81e-19 87.0
Msa1377240 AT4G11530.1 26.484 219 145 5 39 244 32 247 4.58e-19 86.3
Msa1377240 AT4G23260.2 25.778 225 146 6 34 243 32 250 8.75e-19 85.5
Msa1377240 AT4G23260.1 25.778 225 146 6 34 243 32 250 1.09e-18 85.1
Msa1377240 AT4G23300.1 27.869 244 156 8 19 245 12 252 1.71e-18 84.7
Msa1377240 AT4G23190.1 26.744 258 164 10 1 243 1 248 2.83e-18 84.0
Msa1377240 AT4G23190.2 26.744 258 164 10 1 243 1 248 3.15e-18 84.0
Msa1377240 AT3G22020.2 36.552 145 81 5 86 222 58 199 3.69e-18 80.5
Msa1377240 AT3G22020.1 36.552 145 81 5 86 222 58 199 3.69e-18 80.5
Msa1377240 AT4G23210.1 26.577 222 145 6 39 245 34 252 1.92e-17 81.6
Msa1377240 AT5G41300.1 25.498 251 167 6 3 240 4 247 2.03e-17 79.7
Msa1377240 AT4G23210.2 26.577 222 145 6 39 245 34 252 2.33e-17 81.3
Msa1377240 AT4G23210.4 26.577 222 145 6 39 245 34 252 2.33e-17 81.3
Msa1377240 AT4G23210.3 26.577 222 145 6 39 245 34 252 2.41e-17 81.3
Msa1377240 AT4G23210.5 26.577 222 145 6 39 245 34 252 2.93e-17 80.9
Msa1377240 AT5G41290.1 24.590 244 176 3 3 241 4 244 3.06e-17 79.3
Msa1377240 AT4G04500.1 28.713 202 118 6 64 245 59 254 4.07e-17 80.9
Msa1377240 AT4G04500.2 28.713 202 118 6 64 245 59 254 4.84e-17 80.5
Msa1377240 AT4G04500.3 28.713 202 118 6 64 245 59 254 4.84e-17 80.5
Msa1377240 AT4G23290.2 25.764 229 137 8 36 244 32 247 4.89e-17 80.5
Msa1377240 AT1G63580.1 26.606 218 144 6 36 240 24 238 1.08e-16 77.8
Msa1377240 AT4G23240.1 25.000 220 152 6 33 243 29 244 1.02e-14 73.6
Msa1377240 AT4G11480.2 24.066 241 164 7 6 239 6 234 4.22e-14 71.6
Msa1377240 AT4G11480.4 24.066 241 164 7 6 239 6 234 4.46e-14 71.6
Msa1377240 AT4G11480.3 24.066 241 164 7 6 239 6 234 4.72e-14 71.6
Msa1377240 AT4G23320.2 37.500 104 52 3 154 244 4 107 5.05e-14 71.6
Msa1377240 AT4G23320.1 37.500 104 52 3 154 244 4 107 5.05e-14 71.6
Msa1377240 AT4G23320.3 37.500 104 52 3 154 244 25 128 5.40e-14 71.2
Msa1377240 AT4G11490.1 23.904 251 164 7 6 244 11 246 5.49e-14 71.6
Msa1377240 AT4G11480.1 24.066 241 164 7 6 239 6 234 5.66e-14 71.6
Msa1377240 AT4G23190.3 26.471 170 114 3 85 243 1 170 7.85e-14 70.9
Msa1377240 AT4G23190.4 26.471 170 114 3 85 243 1 170 7.85e-14 70.9
Msa1377240 AT4G11470.1 24.031 258 158 8 6 243 6 245 3.19e-13 69.3
Msa1377240 AT4G04510.1 24.706 255 157 8 10 243 7 247 3.74e-13 68.9
Msa1377240 AT4G04510.2 24.706 255 157 8 10 243 9 249 3.78e-13 68.9
Msa1377240 AT4G11470.2 24.031 258 158 8 6 243 11 250 3.78e-13 68.9
Msa1377240 AT4G23250.2 25.108 231 145 7 34 243 32 255 5.43e-13 68.6
Msa1377240 AT4G23250.1 25.108 231 145 7 34 243 32 255 5.75e-13 68.6
Msa1377240 AT4G23250.3 25.108 231 145 7 34 243 32 255 6.41e-13 68.6
Msa1377240 AT4G04490.1 29.148 223 133 8 37 243 33 246 8.57e-13 67.8
Msa1377240 AT5G40380.3 25.410 244 156 9 7 243 12 236 1.15e-11 64.3
Msa1377240 AT5G40380.2 25.410 244 156 9 7 243 12 236 1.29e-11 64.3
Msa1377240 AT5G40380.1 25.820 244 155 10 7 243 12 236 1.38e-11 64.3
Msa1377240 AT5G41280.1 26.702 191 117 5 58 239 67 243 2.09e-11 62.8
Msa1377240 AT4G21410.1 31.452 124 81 3 124 243 1 124 3.43e-11 63.2
Msa1377240 AT1G70520.1 26.214 206 144 5 41 244 47 246 3.56e-11 63.2
Msa1377240 AT4G04540.2 26.457 223 142 7 39 243 35 253 4.81e-11 62.8
Msa1377240 AT4G04540.3 26.457 223 142 7 39 243 35 253 5.37e-11 62.4
Msa1377240 AT4G04540.4 26.457 223 142 7 39 243 35 253 5.46e-11 62.4
Msa1377240 AT4G04540.1 26.457 223 142 7 39 243 35 253 6.86e-11 62.4

Find 37 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGCATGTTCAAATATT+TGG 0.127073 tig0019874:+114416 Msa1377240:CDS
CAATGTTTGTCCATATAAAA+AGG 0.147126 tig0019874:+114374 Msa1377240:CDS
GGAGAATCAGAGAGAGTTTA+TGG 0.176209 tig0019874:+114609 Msa1377240:CDS
GCCCATATGCTTGTTGGTTT+TGG 0.205733 tig0019874:-114278 None:intergenic
TCTTGCTAATGAAGCTTCTA+TGG 0.243008 tig0019874:+114551 Msa1377240:CDS
TTCTTTATTCAAACAGCCTT+TGG 0.315222 tig0019874:+114105 Msa1377240:CDS
TATTTGGACAATGATTTCTT+TGG 0.337508 tig0019874:+114432 Msa1377240:CDS
AAAACCCCTTCAACAGGTTT+TGG 0.339347 tig0019874:+114228 Msa1377240:CDS
ATGAAATTTACCCTTTCGTT+AGG 0.341451 tig0019874:+114766 Msa1377240:CDS
GAGCTAGCCCATATGCTTGT+TGG 0.350069 tig0019874:-114284 None:intergenic
GCTAGTGGAGAGTTGAAGAT+TGG 0.363707 tig0019874:+114588 Msa1377240:CDS
GCAATTATCGTACCATATAA+TGG 0.374511 tig0019874:-114400 None:intergenic
ATCTACAAAACCCCTTCAAC+AGG 0.382778 tig0019874:+114222 Msa1377240:CDS
TACCAAAACCAACAAGCATA+TGG 0.393254 tig0019874:+114276 Msa1377240:CDS
GTCATGTTGTTGAATTTGAT+AGG 0.427422 tig0019874:-114510 None:intergenic
GATTGTAAGAAGTGTCTTGA+TGG 0.459889 tig0019874:+114666 Msa1377240:CDS
GAGAATCAGAGAGAGTTTAT+GGG 0.488405 tig0019874:+114610 Msa1377240:CDS
CCACTGCCAAAACCTGTTGA+AGG 0.489227 tig0019874:-114234 None:intergenic
CAAATTCAACAACATGACTA+AGG 0.496004 tig0019874:+114515 Msa1377240:CDS
TGAAATTTACCCTTTCGTTA+GGG 0.515842 tig0019874:+114767 Msa1377240:CDS
GTTGAACAAATGTGGAAAAG+TGG 0.517504 tig0019874:-114135 None:intergenic
AATAATCGTAAAGAGCTTTG+AGG 0.517728 tig0019874:-114061 None:intergenic
ACCAAAACCAACAAGCATAT+GGG 0.520056 tig0019874:+114277 Msa1377240:CDS
GAAAAGTGGGTCGGCTCCAA+AGG 0.521250 tig0019874:-114121 None:intergenic
AAAGGAGGCAGAGTTGTTGG+TGG 0.540106 tig0019874:+114726 Msa1377240:CDS
GAGTTTACTCCCTAACGAAA+GGG 0.545719 tig0019874:-114776 None:intergenic
TCTTACAATCAACACTAGAA+AGG 0.547293 tig0019874:-114653 None:intergenic
TGAGTTTACTCCCTAACGAA+AGG 0.550623 tig0019874:-114777 None:intergenic
GAACTTCCAAATTGCTGTGA+TGG 0.557359 tig0019874:+114699 Msa1377240:CDS
TCTCAGAGGTTGAACAAATG+TGG 0.566804 tig0019874:-114143 None:intergenic
CACTGCCAAAACCTGTTGAA+GGG 0.570055 tig0019874:-114233 None:intergenic
AACTTCCAAATTGCTGTGAT+GGG 0.577173 tig0019874:+114700 Msa1377240:CDS
TTGAACAAATGTGGAAAAGT+GGG 0.598581 tig0019874:-114134 None:intergenic
ACTGCCAAAACCTGTTGAAG+GGG 0.600045 tig0019874:-114232 None:intergenic
ACAAATGTGGAAAAGTGGGT+CGG 0.648482 tig0019874:-114130 None:intergenic
TATGGGCTAGCTCTTTGTCG+TGG 0.668182 tig0019874:+114294 Msa1377240:CDS
ATGTGATGTGAAGTTCTCAG+AGG 0.753488 tig0019874:-114157 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTTTGTCCATATAAAAA+GGG + tig0019874:114375-114394 Msa1377240:CDS 20.0%
!! TAATTGCATGTTCAAATATT+TGG + tig0019874:114416-114435 Msa1377240:CDS 20.0%
! CAATGTTTGTCCATATAAAA+AGG + tig0019874:114374-114393 Msa1377240:CDS 25.0%
! TATTTGGACAATGATTTCTT+TGG + tig0019874:114432-114451 Msa1377240:CDS 25.0%
! GATAAAAAACTTTATGCTAG+TGG + tig0019874:114573-114592 Msa1377240:CDS 25.0%
AATAATCGTAAAGAGCTTTG+AGG - tig0019874:114064-114083 None:intergenic 30.0%
TTCTTTATTCAAACAGCCTT+TGG + tig0019874:114105-114124 Msa1377240:CDS 30.0%
TTGAACAAATGTGGAAAAGT+GGG - tig0019874:114137-114156 None:intergenic 30.0%
! ATAATGGCACCCTTTTTATA+TGG - tig0019874:114387-114406 None:intergenic 30.0%
!! ATAAAAAGGGTGCCATTATA+TGG + tig0019874:114388-114407 Msa1377240:CDS 30.0%
GCAATTATCGTACCATATAA+TGG - tig0019874:114403-114422 None:intergenic 30.0%
GTCATGTTGTTGAATTTGAT+AGG - tig0019874:114513-114532 None:intergenic 30.0%
CAAATTCAACAACATGACTA+AGG + tig0019874:114515-114534 Msa1377240:CDS 30.0%
TCTTACAATCAACACTAGAA+AGG - tig0019874:114656-114675 None:intergenic 30.0%
ATGAAATTTACCCTTTCGTT+AGG + tig0019874:114766-114785 Msa1377240:CDS 30.0%
TGAAATTTACCCTTTCGTTA+GGG + tig0019874:114767-114786 Msa1377240:CDS 30.0%
GTTGAACAAATGTGGAAAAG+TGG - tig0019874:114138-114157 None:intergenic 35.0%
!!! TGCTTGTTGGTTTTGGTATT+GGG - tig0019874:114274-114293 None:intergenic 35.0%
!!! ATGCTTGTTGGTTTTGGTAT+TGG - tig0019874:114275-114294 None:intergenic 35.0%
TACCAAAACCAACAAGCATA+TGG + tig0019874:114276-114295 Msa1377240:CDS 35.0%
ACCAAAACCAACAAGCATAT+GGG + tig0019874:114277-114296 Msa1377240:CDS 35.0%
! AACACAAGTTTTGCATTCTG+AGG - tig0019874:114331-114350 None:intergenic 35.0%
TCTTGCTAATGAAGCTTCTA+TGG + tig0019874:114551-114570 Msa1377240:CDS 35.0%
GAGAATCAGAGAGAGTTTAT+GGG + tig0019874:114610-114629 Msa1377240:CDS 35.0%
!! GATTGTAAGAAGTGTCTTGA+TGG + tig0019874:114666-114685 Msa1377240:CDS 35.0%
AACTTCCAAATTGCTGTGAT+GGG + tig0019874:114700-114719 Msa1377240:CDS 35.0%
! TTTTTCCCATCACAGCAATT+TGG - tig0019874:114708-114727 None:intergenic 35.0%
! AATTGCTGTGATGGGAAAAA+AGG + tig0019874:114708-114727 Msa1377240:CDS 35.0%
ACAAATGTGGAAAAGTGGGT+CGG - tig0019874:114133-114152 None:intergenic 40.0%
TCTCAGAGGTTGAACAAATG+TGG - tig0019874:114146-114165 None:intergenic 40.0%
ATGTGATGTGAAGTTCTCAG+AGG - tig0019874:114160-114179 None:intergenic 40.0%
ATCTACAAAACCCCTTCAAC+AGG + tig0019874:114222-114241 Msa1377240:CDS 40.0%
! AAAACCCCTTCAACAGGTTT+TGG + tig0019874:114228-114247 Msa1377240:CDS 40.0%
GGAGAATCAGAGAGAGTTTA+TGG + tig0019874:114609-114628 Msa1377240:CDS 40.0%
GAACTTCCAAATTGCTGTGA+TGG + tig0019874:114699-114718 Msa1377240:CDS 40.0%
AAAAAAGGAGGCAGAGTTGT+TGG + tig0019874:114723-114742 Msa1377240:CDS 40.0%
ACTGCCAAAACCTGTTGAAG+GGG - tig0019874:114235-114254 None:intergenic 45.0%
CACTGCCAAAACCTGTTGAA+GGG - tig0019874:114236-114255 None:intergenic 45.0%
!!! GCCCATATGCTTGTTGGTTT+TGG - tig0019874:114281-114300 None:intergenic 45.0%
GCTAGTGGAGAGTTGAAGAT+TGG + tig0019874:114588-114607 Msa1377240:CDS 45.0%
! TGCTGTGATGGGAAAAAAGG+AGG + tig0019874:114711-114730 Msa1377240:CDS 45.0%
CCACTGCCAAAACCTGTTGA+AGG - tig0019874:114237-114256 None:intergenic 50.0%
!! CCTTCAACAGGTTTTGGCAG+TGG + tig0019874:114234-114253 Msa1377240:CDS 50.0%
!! AGGTTTTGGCAGTGGATCAG+TGG + tig0019874:114242-114261 Msa1377240:CDS 50.0%
!! GGTTTTGGCAGTGGATCAGT+GGG + tig0019874:114243-114262 Msa1377240:CDS 50.0%
GAGCTAGCCCATATGCTTGT+TGG - tig0019874:114287-114306 None:intergenic 50.0%
!! TATGGGCTAGCTCTTTGTCG+TGG + tig0019874:114294-114313 Msa1377240:CDS 50.0%
AAAGGAGGCAGAGTTGTTGG+TGG + tig0019874:114726-114745 Msa1377240:CDS 50.0%
! GAAAAGTGGGTCGGCTCCAA+AGG - tig0019874:114124-114143 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0019874 gene 114054 114794 114054 ID=Msa1377240;Name=Msa1377240
tig0019874 mRNA 114054 114794 114054 ID=Msa1377240-mRNA-1;Parent=Msa1377240;Name=Msa1377240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|246
tig0019874 exon 114054 114794 114054 ID=Msa1377240-mRNA-1:exon:5491;Parent=Msa1377240-mRNA-1
tig0019874 CDS 114054 114794 114054 ID=Msa1377240-mRNA-1:cds;Parent=Msa1377240-mRNA-1
Gene Sequence

>Msa1377240

ATGGGTTCCTCAAAGCTCTTTACGATTATTCTCTTCTCATTTACTTTTGCTTTCTTTATTCAAACAGCCTTTGGAGCCGACCCACTTTTCCACATTTGTTCAACCTCTGAGAACTTCACATCACATAGTCAATATGAATCGAACTTGAAAACACTCATCAACTCACTTATCTACAAAACCCCTTCAACAGGTTTTGGCAGTGGATCAGTGGGTCTGACCCAATACCAAAACCAACAAGCATATGGGCTAGCTCTTTGTCGTGGCGATGTATCAACCTCAGAATGCAAAACTTGTGTTTCACAAGCAACTAAAGAAATTCTCAATGTTTGTCCATATAAAAAGGGTGCCATTATATGGTACGATAATTGCATGTTCAAATATTTGGACAATGATTTCTTTGGTAAAATTGATAATACAAACAAGTTCGCTTTATTGAATGTACAAAATGTTAGTGATCCTATCAAATTCAACAACATGACTAAGGACTTATTGAGCTTTCTTGCTAATGAAGCTTCTATGGATAAAAAACTTTATGCTAGTGGAGAGTTGAAGATTGGAGAATCAGAGAGAGTTTATGGGCTAACTCAATGCACTAGAGACCTTTCTAGTGTTGATTGTAAGAAGTGTCTTGATGGTGCAATTAGTGAACTTCCAAATTGCTGTGATGGGAAAAAAGGAGGCAGAGTTGTTGGTGGAAGTTGCAATATTCGATATGAAATTTACCCTTTCGTTAGGGAGTAA
Protein sequence

>Msa1377240

MGSSKLFTIILFSFTFAFFIQTAFGADPLFHICSTSENFTSHSQYESNLKTLINSLIYKTPSTGFGSGSVGLTQYQNQQAYGLALCRGDVSTSECKTCVSQATKEILNVCPYKKGAIIWYDNCMFKYLDNDFFGKIDNTNKFALLNVQNVSDPIKFNNMTKDLLSFLANEASMDKKLYASGELKIGESERVYGLTQCTRDLSSVDCKKCLDGAISELPNCCDGKKGGRVVGGSCNIRYEIYPFVRE*