AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0970790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970790 MtrunA17_Chr6g0449731 97.717 219 5 0 1 219 1 219 3.08e-156 431
Msa0970790 MtrunA17_Chr6g0449771 97.273 220 6 0 1 220 1 220 3.44e-156 431
Msa0970790 MtrunA17_Chr6g0449751 95.000 220 11 0 1 220 1 220 2.43e-152 421
Msa0970790 MtrunA17_Chr6g0449761 96.296 216 8 0 1 216 1 216 3.54e-152 422
Msa0970790 MtrunA17_Chr1g0189841 82.028 217 36 3 7 220 6 222 1.30e-125 354
Msa0970790 MtrunA17_Chr2g0285871 78.440 218 45 2 5 220 4 221 1.48e-120 341
Msa0970790 MtrunA17_Chr4g0007041 76.471 221 51 1 1 220 1 221 2.67e-120 340
Msa0970790 MtrunA17_Chr4g0007031 77.982 218 46 2 5 220 4 221 2.97e-120 340
Msa0970790 MtrunA17_Chr5g0419971 77.982 218 46 2 5 220 4 221 2.97e-120 340
Msa0970790 MtrunA17_Chr5g0419981 77.982 218 46 2 5 220 4 221 2.97e-120 340
Msa0970790 MtrunA17_Chr4g0007051 77.982 218 46 2 5 220 4 221 3.36e-120 340
Msa0970790 MtrunA17_Chr6g0449781 75.455 220 53 1 1 220 1 219 5.07e-114 324
Msa0970790 MtrunA17_Chr6g0449791 71.635 208 58 1 1 207 1 208 5.13e-103 296
Msa0970790 MtrunA17_Chr1g0156131 62.814 199 64 2 19 215 19 209 2.59e-84 249
Msa0970790 MtrunA17_Chr2g0292831 62.312 199 68 2 19 215 19 212 1.70e-83 247
Msa0970790 MtrunA17_Chr2g0292901 62.000 200 68 3 19 215 19 213 9.41e-81 240
Msa0970790 MtrunA17_Chr2g0292861 65.116 172 57 2 47 215 7 178 5.24e-76 227
Msa0970790 MtrunA17_Chr2g0292841 65.116 172 57 2 47 215 7 178 1.69e-74 223
Msa0970790 MtrunA17_Chr1g0193671 47.143 210 101 4 11 214 8 213 2.03e-59 186
Msa0970790 MtrunA17_Chr7g0271211 51.531 196 89 3 22 215 20 211 5.54e-57 179
Msa0970790 MtrunA17_Chr1g0193421 48.500 200 97 3 18 215 20 215 7.28e-56 177
Msa0970790 MtrunA17_Chr2g0292911 68.644 118 35 1 47 162 7 124 1.28e-53 169
Msa0970790 MtrunA17_Chr5g0414971 47.716 197 96 4 22 215 27 219 4.53e-53 170
Msa0970790 MtrunA17_Chr1g0210761 43.519 216 107 6 2 215 5 207 1.63e-48 158
Msa0970790 MtrunA17_Chr1g0178711 39.048 210 118 4 12 215 16 221 2.42e-43 145
Msa0970790 MtrunA17_Chr2g0300561 42.056 214 109 5 1 212 3 203 4.36e-43 144
Msa0970790 MtrunA17_Chr8g0344021 44.503 191 87 5 5 189 7 184 4.18e-42 141
Msa0970790 MtrunA17_Chr2g0300581 39.070 215 116 5 1 213 3 204 2.09e-39 134
Msa0970790 MtrunA17_Chr2g0300591 39.252 214 115 5 1 212 3 203 3.04e-39 134
Msa0970790 MtrunA17_Chr8g0335851 42.262 168 94 2 22 188 26 191 2.69e-35 124
Msa0970790 MtrunA17_Chr8g0343911 39.474 190 107 4 26 213 19 202 4.15e-35 123
Msa0970790 MtrunA17_Chr8g0343934 37.264 212 120 5 5 215 6 205 1.42e-34 122
Msa0970790 MtrunA17_Chr3g0084531 38.208 212 118 5 5 215 6 205 2.67e-34 121
Msa0970790 MtrunA17_Chr8g0343954 39.683 189 106 4 28 215 24 205 1.88e-33 119
Msa0970790 MtrunA17_Chr3g0084521 37.736 212 118 5 5 215 6 204 4.81e-33 118
Msa0970790 MtrunA17_Chr3g0084511 37.264 212 119 5 5 215 6 204 8.77e-33 117
Msa0970790 MtrunA17_Chr2g0313961 38.191 199 115 4 18 215 14 205 1.09e-32 117
Msa0970790 MtrunA17_Chr2g0302171 37.736 212 119 5 5 215 6 205 1.52e-32 117
Msa0970790 MtrunA17_Chr2g0297231 37.688 199 116 4 18 215 14 205 3.77e-32 115
Msa0970790 MtrunA17_Chr2g0297241 37.688 199 116 4 18 215 14 205 1.09e-31 114
Msa0970790 MtrunA17_Chr8g0343961 35.981 214 124 6 3 215 4 205 9.35e-31 112
Msa0970790 MtrunA17_Chr8g0344051 37.788 217 114 6 5 215 7 208 1.32e-30 112
Msa0970790 MtrunA17_Chr3g0130241 33.953 215 135 4 1 211 65 276 2.28e-30 113
Msa0970790 MtrunA17_Chr8g0343921 39.474 190 105 6 28 215 22 203 2.43e-30 111
Msa0970790 MtrunA17_Chr4g0003361 39.080 174 99 4 43 215 34 201 3.08e-30 110
Msa0970790 MtrunA17_Chr2g0301611 36.683 199 118 4 18 215 14 205 4.17e-30 110
Msa0970790 MtrunA17_Chr8g0344041 36.316 190 112 4 28 215 27 209 4.32e-29 108
Msa0970790 MtrunA17_Chr8g0344031 34.434 212 131 4 5 215 3 207 2.21e-28 106
Msa0970790 MtrunA17_Chr5g0411961 34.171 199 123 4 18 215 14 205 1.57e-27 103
Msa0970790 MtrunA17_Chr2g0286171 34.101 217 132 6 1 215 1 208 1.98e-27 103
Msa0970790 MtrunA17_Chr2g0302541 36.126 191 114 4 26 215 22 205 4.41e-27 102
Msa0970790 MtrunA17_Chr4g0012651 36.126 191 114 4 26 215 22 205 5.69e-27 102
Msa0970790 MtrunA17_Chr7g0217811 35.602 191 115 4 26 215 22 205 8.89e-27 102
Msa0970790 MtrunA17_Chr4g0026191 39.161 143 82 3 74 215 67 205 2.84e-26 100
Msa0970790 MtrunA17_Chr4g0026201 39.161 143 82 3 74 215 67 205 3.26e-26 100
Msa0970790 MtrunA17_Chr2g0321581 34.389 221 114 8 2 215 8 204 4.77e-26 100
Msa0970790 MtrunA17_Chr2g0321591 34.562 217 111 8 6 215 12 204 7.14e-26 99.8
Msa0970790 MtrunA17_Chr3g0115141 35.450 189 112 5 28 215 27 206 3.45e-25 98.2
Msa0970790 MtrunA17_Chr2g0321601 33.953 215 123 7 2 215 7 203 3.88e-25 97.8
Msa0970790 MtrunA17_Chr2g0292881 71.930 57 16 0 93 149 1 57 6.26e-23 87.8
Msa0970790 MtrunA17_Chr3g0084551 32.487 197 117 7 18 212 14 196 7.38e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970790 AT5G39120.1 64.840 219 73 3 1 215 1 219 1.66e-93 273
Msa0970790 AT5G39150.1 64.384 219 74 3 1 215 1 219 1.01e-92 271
Msa0970790 AT5G39180.1 64.384 219 74 3 1 215 1 219 1.80e-92 270
Msa0970790 AT5G39110.1 64.651 215 73 2 4 215 6 220 5.38e-92 269
Msa0970790 AT5G38940.1 67.347 196 62 1 22 215 26 221 1.69e-90 265
Msa0970790 AT5G38940.2 67.347 196 62 1 22 215 50 245 2.68e-90 266
Msa0970790 AT5G38930.1 67.677 198 62 1 20 215 24 221 1.01e-89 263
Msa0970790 AT3G05950.1 66.986 209 64 4 11 215 14 221 1.32e-88 261
Msa0970790 AT5G39160.1 66.834 199 62 3 20 215 22 219 1.74e-88 260
Msa0970790 AT5G39130.1 66.332 199 63 3 20 215 22 219 1.96e-88 260
Msa0970790 AT5G39190.1 66.834 199 62 3 20 215 22 219 2.88e-88 259
Msa0970790 AT5G38960.1 64.677 201 68 2 18 215 22 222 2.65e-87 257
Msa0970790 AT5G38910.1 63.470 219 76 4 1 215 1 219 3.05e-87 257
Msa0970790 AT4G14630.1 64.824 199 67 2 20 215 24 222 3.14e-85 252
Msa0970790 AT5G39160.3 64.322 199 63 3 20 215 22 215 1.00e-83 248
Msa0970790 AT3G04200.1 62.037 216 75 4 3 215 11 222 2.31e-82 245
Msa0970790 AT3G04150.1 57.658 222 86 5 1 215 1 221 5.52e-76 229
Msa0970790 AT3G04190.1 59.804 204 78 3 15 215 19 221 3.28e-75 226
Msa0970790 AT5G39190.2 59.898 197 57 2 20 215 22 197 2.50e-74 224
Msa0970790 AT5G39160.2 59.391 197 58 2 20 215 22 197 5.74e-74 223
Msa0970790 AT3G04150.2 54.274 234 88 5 1 215 1 234 8.83e-74 224
Msa0970790 AT3G04170.1 57.416 209 81 5 11 215 14 218 1.47e-71 218
Msa0970790 AT3G04180.1 56.863 204 84 3 15 215 19 221 1.80e-71 217
Msa0970790 AT5G38910.2 51.598 219 65 5 1 215 1 182 1.12e-60 188
Msa0970790 AT1G02335.1 47.980 198 97 3 20 215 22 215 1.43e-57 182
Msa0970790 AT1G09560.1 50.254 197 92 3 22 216 24 216 1.69e-57 181
Msa0970790 AT3G62020.1 47.642 212 104 4 7 215 8 215 2.12e-56 179
Msa0970790 AT3G05930.1 46.364 220 108 5 1 215 1 215 2.29e-56 179
Msa0970790 AT1G18970.1 46.009 213 107 4 7 217 14 220 1.08e-55 177
Msa0970790 AT1G18980.1 48.485 198 94 4 22 217 29 220 1.15e-53 172
Msa0970790 AT5G26700.1 46.890 209 92 6 11 215 16 209 1.91e-53 171
Msa0970790 AT3G62020.2 48.889 180 87 3 39 215 9 186 3.21e-49 159
Msa0970790 AT1G10460.1 42.211 199 108 5 22 215 19 215 6.01e-48 157
Msa0970790 AT3G10080.1 40.796 201 111 4 19 215 23 219 4.15e-44 147
Msa0970790 AT3G10080.2 40.594 202 112 4 18 215 93 290 2.31e-43 147
Msa0970790 AT5G20630.1 40.838 191 101 4 1 189 3 183 3.19e-39 134
Msa0970790 AT5G61750.1 42.162 185 97 4 5 187 7 183 2.57e-38 132
Msa0970790 AT1G74820.1 37.615 218 120 5 8 215 14 225 3.98e-36 127
Msa0970790 AT1G72610.1 38.095 189 109 4 26 212 19 201 1.44e-32 117
Msa0970790 AT5G38950.1 64.062 64 23 0 144 207 2 65 2.46e-20 82.8

Find 51 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTGCTAATGCTGTATT+TGG 0.057045 6_4:-2450429 Msa0970790:CDS
CTTGTTTGTGACAGCCTTCT+TGG 0.121595 6_4:-2451121 Msa0970790:CDS
CTTTGATCCCAGCCCTTTAC+AGG 0.229771 6_4:-2451076 Msa0970790:CDS
TAGTGATTACACCTGGATTT+TGG 0.253401 6_4:+2450448 None:intergenic
TTCACTTTCAATTGAATGTT+GGG 0.325573 6_4:-2450506 Msa0970790:CDS
TCATTTGCTGTAGCAAGCTT+TGG 0.355521 6_4:+2450819 None:intergenic
AGTATACATACCACCATTCT+TGG 0.356363 6_4:+2451029 None:intergenic
ATACTAGGACTAAACACTTT+AGG 0.375557 6_4:-2450720 Msa0970790:CDS
TTGGAGGGTACTCTTTATGT+TGG 0.391607 6_4:-2450612 Msa0970790:CDS
GGAAATGCAGTTGTCATTGC+TGG 0.408325 6_4:-2450480 Msa0970790:CDS
AGTATCTCATTAACTGTAAC+CGG 0.413639 6_4:+2450738 None:intergenic
CCACTATGTTATTGTCCACT+TGG 0.415021 6_4:+2450364 None:intergenic
TGAAAGTGAATGAGGCCAAT+TGG 0.419001 6_4:+2450519 None:intergenic
TGGAGGGTACTCTTTATGTT+GGG 0.430272 6_4:-2450611 Msa0970790:CDS
ATTCACTTTCAATTGAATGT+TGG 0.434824 6_4:-2450507 Msa0970790:CDS
TTTCAATTGAATGTTGGGTA+TGG 0.435827 6_4:-2450501 Msa0970790:CDS
GATGTCTTCGTGTTTCCAAT+TGG 0.447280 6_4:-2450534 Msa0970790:CDS
CTATTGCTAATGCTGTATTT+GGG 0.459960 6_4:-2450428 Msa0970790:CDS
TTCTTCTACTCGGTGAAAGA+AGG 0.467010 6_4:-2450795 Msa0970790:CDS
ATTGTCCACTTGGAAAGCTT+TGG 0.467417 6_4:+2450374 None:intergenic
ATAAGAATCTCAGTGGCTCT+AGG 0.470121 6_4:+2450639 None:intergenic
ACAAAAGTCCTGTAAAGGGC+TGG 0.473345 6_4:+2451068 None:intergenic
TGAGATTCTTATCGTGTTGG+AGG 0.479548 6_4:-2450628 Msa0970790:CDS
TCGCATTGACTTCGCTGCTA+GGG 0.481033 6_4:-2450685 Msa0970790:CDS
GCCACACAAAAGTCCTGTAA+AGG 0.489153 6_4:+2451063 None:intergenic
CCACACAAAAGTCCTGTAAA+GGG 0.499728 6_4:+2451064 None:intergenic
CTCGCATTGACTTCGCTGCT+AGG 0.500918 6_4:-2450686 Msa0970790:CDS
CTGTAAAGGGCTGGGATCAA+AGG 0.503397 6_4:+2451077 None:intergenic
CAAAAGTCCTGTAAAGGGCT+GGG 0.517672 6_4:+2451069 None:intergenic
CACTGAGATTCTTATCGTGT+TGG 0.542092 6_4:-2450631 Msa0970790:CDS
GTGGCTCTAGGGTGAGTATG+TGG 0.548107 6_4:+2450651 None:intergenic
TAAGAATCTCAGTGGCTCTA+GGG 0.548530 6_4:+2450640 None:intergenic
CGCATTGACTTCGCTGCTAG+GGG 0.548623 6_4:-2450684 Msa0970790:CDS
GGACTTAGCAGCCAAAATCC+AGG 0.549743 6_4:-2450459 Msa0970790:CDS
CATTCAATTGAAAGTGAATG+AGG 0.551568 6_4:+2450511 None:intergenic
AGCAAATGATTTCTTCTACT+CGG 0.553402 6_4:-2450805 Msa0970790:CDS
GTTACAGTTAATGAGATACT+AGG 0.558743 6_4:-2450735 Msa0970790:CDS
ACAAGATGCTAAAGCCAAGA+AGG 0.574992 6_4:+2451107 None:intergenic
TGTGAATGGCAAATTCTGCA+AGG 0.584711 6_4:-2450844 Msa0970790:CDS
GAGATTCTTATCGTGTTGGA+GGG 0.612927 6_4:-2450627 Msa0970790:CDS
CCAAGTGGACAATAACATAG+TGG 0.613774 6_4:-2450364 Msa0970790:CDS
TTAGCAATAGTGATTACACC+TGG 0.624375 6_4:+2450441 None:intergenic
ATCAATGACACCAAGAATGG+TGG 0.627435 6_4:-2451039 Msa0970790:intron
GCTATCAATGACACCAAGAA+TGG 0.633041 6_4:-2451042 Msa0970790:CDS
GGAAACACATCAAATCCACT+TGG 0.642079 6_4:-2450774 Msa0970790:CDS
ATCACAAAAGTACTCAACAA+AGG 0.644517 6_4:-2450558 Msa0970790:CDS
AGGGCTGGGATCAAAGGCAA+AGG 0.658426 6_4:+2451083 None:intergenic
TCTCACCAAAGCTTTCCAAG+TGG 0.665947 6_4:-2450379 Msa0970790:CDS
ACTTGGTTCAAAAGTGACAC+CGG 0.669513 6_4:-2450757 Msa0970790:CDS
GCTCTAGGGTGAGTATGTGG+AGG 0.673911 6_4:+2450654 None:intergenic
CAACACGATAAGAATCTCAG+TGG 0.757588 6_4:+2450632 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTATTTTGACTAGTT+TGG - chr6_4:2450467-2450486 Msa0970790:CDS 15.0%
!!! TTTATTTATTTTGACTAGTT+TGG - chr6_4:2450467-2450486 Msa0970790:CDS 15.0%
! ATTCACTTTCAATTGAATGT+TGG - chr6_4:2450954-2450973 Msa0970790:intron 25.0%
! TTCACTTTCAATTGAATGTT+GGG - chr6_4:2450955-2450974 Msa0970790:intron 25.0%
!!! AGAACTTCTGAAGAAATTTT+TGG + chr6_4:2451065-2451084 None:intergenic 25.0%
! ACAATCTTCAAAAACAATTC+TGG - chr6_4:2451120-2451139 Msa0970790:CDS 25.0%
! CAATCTTCAAAAACAATTCT+GGG - chr6_4:2451121-2451140 Msa0970790:CDS 25.0%
! ATTCACTTTCAATTGAATGT+TGG - chr6_4:2450954-2450973 Msa0970790:intron 25.0%
! TTCACTTTCAATTGAATGTT+GGG - chr6_4:2450955-2450974 Msa0970790:intron 25.0%
!!! AGAACTTCTGAAGAAATTTT+TGG + chr6_4:2451065-2451084 None:intergenic 25.0%
! ACAATCTTCAAAAACAATTC+TGG - chr6_4:2451120-2451139 Msa0970790:CDS 25.0%
! CAATCTTCAAAAACAATTCT+GGG - chr6_4:2451121-2451140 Msa0970790:CDS 25.0%
! CTTTTGTATCATAGTTCAAC+TGG + chr6_4:2450507-2450526 None:intergenic 30.0%
TGTATGTATCAATGTTGTCT+AGG + chr6_4:2450544-2450563 None:intergenic 30.0%
! TGTTTTGCAGTTTTTGTGAA+TGG - chr6_4:2450603-2450622 Msa0970790:CDS 30.0%
AGCAAATGATTTCTTCTACT+CGG - chr6_4:2450656-2450675 Msa0970790:CDS 30.0%
AGTATCTCATTAACTGTAAC+CGG + chr6_4:2450726-2450745 None:intergenic 30.0%
GTTACAGTTAATGAGATACT+AGG - chr6_4:2450726-2450745 Msa0970790:CDS 30.0%
ATACTAGGACTAAACACTTT+AGG - chr6_4:2450741-2450760 Msa0970790:CDS 30.0%
!! ATCACAAAAGTACTCAACAA+AGG - chr6_4:2450903-2450922 Msa0970790:intron 30.0%
CATTCAATTGAAAGTGAATG+AGG + chr6_4:2450953-2450972 None:intergenic 30.0%
TTTCAATTGAATGTTGGGTA+TGG - chr6_4:2450960-2450979 Msa0970790:intron 30.0%
ACTATTGCTAATGCTGTATT+TGG - chr6_4:2451032-2451051 Msa0970790:intron 30.0%
CTATTGCTAATGCTGTATTT+GGG - chr6_4:2451033-2451052 Msa0970790:intron 30.0%
! CTTTTGTATCATAGTTCAAC+TGG + chr6_4:2450507-2450526 None:intergenic 30.0%
TGTATGTATCAATGTTGTCT+AGG + chr6_4:2450544-2450563 None:intergenic 30.0%
! TGTTTTGCAGTTTTTGTGAA+TGG - chr6_4:2450603-2450622 Msa0970790:CDS 30.0%
AGCAAATGATTTCTTCTACT+CGG - chr6_4:2450656-2450675 Msa0970790:CDS 30.0%
AGTATCTCATTAACTGTAAC+CGG + chr6_4:2450726-2450745 None:intergenic 30.0%
GTTACAGTTAATGAGATACT+AGG - chr6_4:2450726-2450745 Msa0970790:CDS 30.0%
ATACTAGGACTAAACACTTT+AGG - chr6_4:2450741-2450760 Msa0970790:CDS 30.0%
!! ATCACAAAAGTACTCAACAA+AGG - chr6_4:2450903-2450922 Msa0970790:intron 30.0%
CATTCAATTGAAAGTGAATG+AGG + chr6_4:2450953-2450972 None:intergenic 30.0%
TTTCAATTGAATGTTGGGTA+TGG - chr6_4:2450960-2450979 Msa0970790:intron 30.0%
ACTATTGCTAATGCTGTATT+TGG - chr6_4:2451032-2451051 Msa0970790:intron 30.0%
CTATTGCTAATGCTGTATTT+GGG - chr6_4:2451033-2451052 Msa0970790:intron 30.0%
AGTATACATACCACCATTCT+TGG + chr6_4:2450435-2450454 None:intergenic 35.0%
! TGAGTACTTTTGTGATGAGA+CGG + chr6_4:2450899-2450918 None:intergenic 35.0%
! TAGTGATTACACCTGGATTT+TGG + chr6_4:2451016-2451035 None:intergenic 35.0%
TTAGCAATAGTGATTACACC+TGG + chr6_4:2451023-2451042 None:intergenic 35.0%
TCTTCAAAAACAATTCTGGG+TGG - chr6_4:2451124-2451143 Msa0970790:CDS 35.0%
AGTATACATACCACCATTCT+TGG + chr6_4:2450435-2450454 None:intergenic 35.0%
! TGAGTACTTTTGTGATGAGA+CGG + chr6_4:2450899-2450918 None:intergenic 35.0%
! TAGTGATTACACCTGGATTT+TGG + chr6_4:2451016-2451035 None:intergenic 35.0%
TTAGCAATAGTGATTACACC+TGG + chr6_4:2451023-2451042 None:intergenic 35.0%
TCTTCAAAAACAATTCTGGG+TGG - chr6_4:2451124-2451143 Msa0970790:CDS 35.0%
ACAAGATGCTAAAGCCAAGA+AGG + chr6_4:2450357-2450376 None:intergenic 40.0%
CCACACAAAAGTCCTGTAAA+GGG + chr6_4:2450400-2450419 None:intergenic 40.0%
GCTATCAATGACACCAAGAA+TGG - chr6_4:2450419-2450438 Msa0970790:CDS 40.0%
ATCAATGACACCAAGAATGG+TGG - chr6_4:2450422-2450441 Msa0970790:CDS 40.0%
TGTGAATGGCAAATTCTGCA+AGG - chr6_4:2450617-2450636 Msa0970790:CDS 40.0%
!! TCATTTGCTGTAGCAAGCTT+TGG + chr6_4:2450645-2450664 None:intergenic 40.0%
! TTCTTCTACTCGGTGAAAGA+AGG - chr6_4:2450666-2450685 Msa0970790:CDS 40.0%
GGAAACACATCAAATCCACT+TGG - chr6_4:2450687-2450706 Msa0970790:CDS 40.0%
ACTTGGTTCAAAAGTGACAC+CGG - chr6_4:2450704-2450723 Msa0970790:CDS 40.0%
! TAAGAATCTCAGTGGCTCTA+GGG + chr6_4:2450824-2450843 None:intergenic 40.0%
ATAAGAATCTCAGTGGCTCT+AGG + chr6_4:2450825-2450844 None:intergenic 40.0%
CAACACGATAAGAATCTCAG+TGG + chr6_4:2450832-2450851 None:intergenic 40.0%
CACTGAGATTCTTATCGTGT+TGG - chr6_4:2450830-2450849 Msa0970790:CDS 40.0%
TGAGATTCTTATCGTGTTGG+AGG - chr6_4:2450833-2450852 Msa0970790:CDS 40.0%
GAGATTCTTATCGTGTTGGA+GGG - chr6_4:2450834-2450853 Msa0970790:CDS 40.0%
!! TTGGAGGGTACTCTTTATGT+TGG - chr6_4:2450849-2450868 Msa0970790:CDS 40.0%
!! TGGAGGGTACTCTTTATGTT+GGG - chr6_4:2450850-2450869 Msa0970790:CDS 40.0%
! TTTGTGATGAGACGGTTTTC+TGG + chr6_4:2450891-2450910 None:intergenic 40.0%
GATGTCTTCGTGTTTCCAAT+TGG - chr6_4:2450927-2450946 Msa0970790:intron 40.0%
TGAAAGTGAATGAGGCCAAT+TGG + chr6_4:2450945-2450964 None:intergenic 40.0%
ATTGTCCACTTGGAAAGCTT+TGG + chr6_4:2451090-2451109 None:intergenic 40.0%
CCACTATGTTATTGTCCACT+TGG + chr6_4:2451100-2451119 None:intergenic 40.0%
CCAAGTGGACAATAACATAG+TGG - chr6_4:2451097-2451116 Msa0970790:CDS 40.0%
ACAAGATGCTAAAGCCAAGA+AGG + chr6_4:2450357-2450376 None:intergenic 40.0%
CCACACAAAAGTCCTGTAAA+GGG + chr6_4:2450400-2450419 None:intergenic 40.0%
GCTATCAATGACACCAAGAA+TGG - chr6_4:2450419-2450438 Msa0970790:CDS 40.0%
ATCAATGACACCAAGAATGG+TGG - chr6_4:2450422-2450441 Msa0970790:CDS 40.0%
TGTGAATGGCAAATTCTGCA+AGG - chr6_4:2450617-2450636 Msa0970790:CDS 40.0%
!! TCATTTGCTGTAGCAAGCTT+TGG + chr6_4:2450645-2450664 None:intergenic 40.0%
! TTCTTCTACTCGGTGAAAGA+AGG - chr6_4:2450666-2450685 Msa0970790:CDS 40.0%
GGAAACACATCAAATCCACT+TGG - chr6_4:2450687-2450706 Msa0970790:CDS 40.0%
ACTTGGTTCAAAAGTGACAC+CGG - chr6_4:2450704-2450723 Msa0970790:CDS 40.0%
! TAAGAATCTCAGTGGCTCTA+GGG + chr6_4:2450824-2450843 None:intergenic 40.0%
ATAAGAATCTCAGTGGCTCT+AGG + chr6_4:2450825-2450844 None:intergenic 40.0%
CAACACGATAAGAATCTCAG+TGG + chr6_4:2450832-2450851 None:intergenic 40.0%
CACTGAGATTCTTATCGTGT+TGG - chr6_4:2450830-2450849 Msa0970790:CDS 40.0%
TGAGATTCTTATCGTGTTGG+AGG - chr6_4:2450833-2450852 Msa0970790:CDS 40.0%
GAGATTCTTATCGTGTTGGA+GGG - chr6_4:2450834-2450853 Msa0970790:CDS 40.0%
!! TTGGAGGGTACTCTTTATGT+TGG - chr6_4:2450849-2450868 Msa0970790:CDS 40.0%
!! TGGAGGGTACTCTTTATGTT+GGG - chr6_4:2450850-2450869 Msa0970790:CDS 40.0%
! TTTGTGATGAGACGGTTTTC+TGG + chr6_4:2450891-2450910 None:intergenic 40.0%
GATGTCTTCGTGTTTCCAAT+TGG - chr6_4:2450927-2450946 Msa0970790:intron 40.0%
TGAAAGTGAATGAGGCCAAT+TGG + chr6_4:2450945-2450964 None:intergenic 40.0%
ATTGTCCACTTGGAAAGCTT+TGG + chr6_4:2451090-2451109 None:intergenic 40.0%
CCACTATGTTATTGTCCACT+TGG + chr6_4:2451100-2451119 None:intergenic 40.0%
CCAAGTGGACAATAACATAG+TGG - chr6_4:2451097-2451116 Msa0970790:CDS 40.0%
CTTGTTTGTGACAGCCTTCT+TGG - chr6_4:2450340-2450359 Msa0970790:CDS 45.0%
CAAAAGTCCTGTAAAGGGCT+GGG + chr6_4:2450395-2450414 None:intergenic 45.0%
ACAAAAGTCCTGTAAAGGGC+TGG + chr6_4:2450396-2450415 None:intergenic 45.0%
! CCCTTTACAGGACTTTTGTG+TGG - chr6_4:2450397-2450416 Msa0970790:CDS 45.0%
GCCACACAAAAGTCCTGTAA+AGG + chr6_4:2450401-2450420 None:intergenic 45.0%
!!! GGTGTCACTTTTGAACCAAG+TGG + chr6_4:2450705-2450724 None:intergenic 45.0%
GGAAATGCAGTTGTCATTGC+TGG - chr6_4:2450981-2451000 Msa0970790:intron 45.0%
TCTCACCAAAGCTTTCCAAG+TGG - chr6_4:2451082-2451101 Msa0970790:CDS 45.0%
CTTGTTTGTGACAGCCTTCT+TGG - chr6_4:2450340-2450359 Msa0970790:CDS 45.0%
CAAAAGTCCTGTAAAGGGCT+GGG + chr6_4:2450395-2450414 None:intergenic 45.0%
ACAAAAGTCCTGTAAAGGGC+TGG + chr6_4:2450396-2450415 None:intergenic 45.0%
! CCCTTTACAGGACTTTTGTG+TGG - chr6_4:2450397-2450416 Msa0970790:CDS 45.0%
GCCACACAAAAGTCCTGTAA+AGG + chr6_4:2450401-2450420 None:intergenic 45.0%
!!! GGTGTCACTTTTGAACCAAG+TGG + chr6_4:2450705-2450724 None:intergenic 45.0%
GGAAATGCAGTTGTCATTGC+TGG - chr6_4:2450981-2451000 Msa0970790:intron 45.0%
TCTCACCAAAGCTTTCCAAG+TGG - chr6_4:2451082-2451101 Msa0970790:CDS 45.0%
CTGTAAAGGGCTGGGATCAA+AGG + chr6_4:2450387-2450406 None:intergenic 50.0%
CTTTGATCCCAGCCCTTTAC+AGG - chr6_4:2450385-2450404 Msa0970790:CDS 50.0%
!! TCGCATTGACTTCGCTGCTA+GGG - chr6_4:2450776-2450795 Msa0970790:CDS 50.0%
GGACTTAGCAGCCAAAATCC+AGG - chr6_4:2451002-2451021 Msa0970790:intron 50.0%
CTGTAAAGGGCTGGGATCAA+AGG + chr6_4:2450387-2450406 None:intergenic 50.0%
CTTTGATCCCAGCCCTTTAC+AGG - chr6_4:2450385-2450404 Msa0970790:CDS 50.0%
!! TCGCATTGACTTCGCTGCTA+GGG - chr6_4:2450776-2450795 Msa0970790:CDS 50.0%
GGACTTAGCAGCCAAAATCC+AGG - chr6_4:2451002-2451021 Msa0970790:intron 50.0%
AGGGCTGGGATCAAAGGCAA+AGG + chr6_4:2450381-2450400 None:intergenic 55.0%
!! CTCGCATTGACTTCGCTGCT+AGG - chr6_4:2450775-2450794 Msa0970790:CDS 55.0%
!! CGCATTGACTTCGCTGCTAG+GGG - chr6_4:2450777-2450796 Msa0970790:CDS 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG + chr6_4:2450810-2450829 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG + chr6_4:2450813-2450832 None:intergenic 55.0%
AGGGCTGGGATCAAAGGCAA+AGG + chr6_4:2450381-2450400 None:intergenic 55.0%
!! CTCGCATTGACTTCGCTGCT+AGG - chr6_4:2450775-2450794 Msa0970790:CDS 55.0%
!! CGCATTGACTTCGCTGCTAG+GGG - chr6_4:2450777-2450796 Msa0970790:CDS 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG + chr6_4:2450810-2450829 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG + chr6_4:2450813-2450832 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 2450326 2451157 2450326 ID=Msa0970790;Name=Msa0970790
chr6_4 mRNA 2450326 2451157 2450326 ID=Msa0970790-mRNA-1;Parent=Msa0970790;Name=Msa0970790-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|220
chr6_4 exon 2451040 2451157 2451040 ID=Msa0970790-mRNA-1:exon:1190;Parent=Msa0970790-mRNA-1
chr6_4 exon 2450326 2450870 2450326 ID=Msa0970790-mRNA-1:exon:1189;Parent=Msa0970790-mRNA-1
chr6_4 CDS 2451040 2451157 2451040 ID=Msa0970790-mRNA-1:cds;Parent=Msa0970790-mRNA-1
chr6_4 CDS 2450326 2450870 2450326 ID=Msa0970790-mRNA-1:cds;Parent=Msa0970790-mRNA-1
Gene Sequence

>Msa0970790

ATGAAGACTTCAATCTTGTTTGTGACAGCCTTCTTGGCTTTAGCATCTTGTGCCTTTGCCTTTGATCCCAGCCCTTTACAGGACTTTTGTGTGGCTATCAATGACACCAAGAATGGTGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCTTGCTACAGCAAATGATTTCTTCTACTCGGTGAAAGAAGGAAACACATCAAATCCACTTGGTTCAAAAGTGACACCGGTTACAGTTAATGAGATACTAGGACTAAACACTTTAGGTATCTCTCTTGCTCGCATTGACTTCGCTGCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATCGTGTTGGAGGGTACTCTTTATGTTGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTCTTCGTGTTTCCAATTGGCCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCAGTTGTCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTAATCACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAAATTTCTTCAGAAGTTCTCACCAAAGCTTTCCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTCTGGGTGGACAACAACTAG

Protein sequence

>Msa0970790

MKTSILFVTAFLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKLATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARIDFAARGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNAVVIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN*