AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379100 MtrunA17_Chr2g0285371 70.857 350 22 4 1 270 1 350 1.29e-158 450
Msa1379100 MtrunA17_Chr2g0285371 48.052 77 24 3 236 296 393 469 1.63e-12 67.4
Msa1379100 MtrunA17_Chr2g0285351 66.857 350 36 4 1 270 1 350 1.02e-153 438
Msa1379100 MtrunA17_Chr2g0285351 60.784 51 11 1 255 296 419 469 5.18e-12 65.9
Msa1379100 MtrunA17_Chr2g0285381 56.364 330 58 6 20 270 24 346 6.53e-115 339
Msa1379100 MtrunA17_Chr3g0133011 45.977 348 99 6 12 270 30 377 2.03e-91 280
Msa1379100 MtrunA17_Chr4g0009721 48.454 291 118 4 10 270 13 301 5.48e-86 263
Msa1379100 MtrunA17_Chr4g0009701 46.061 330 93 6 21 270 28 352 1.99e-82 256
Msa1379100 MtrunA17_Chr4g0009681 44.083 338 110 5 10 270 14 349 8.93e-81 251
Msa1379100 MtrunA17_Chr4g0009661 43.731 327 105 5 21 270 28 352 4.66e-80 250
Msa1379100 MtrunA17_Chr4g0009651 43.731 327 105 6 21 270 28 352 1.36e-77 243
Msa1379100 MtrunA17_Chr4g0009711 42.012 338 117 5 10 270 17 352 1.63e-75 238
Msa1379100 MtrunA17_Chr4g0009671 43.366 309 96 5 39 270 11 317 2.73e-73 231
Msa1379100 MtrunA17_Chr4g0009641 37.870 338 107 6 10 270 17 328 4.19e-60 197
Msa1379100 MtrunA17_Chr3g0093971 32.456 342 130 7 11 270 9 331 1.48e-50 172
Msa1379100 MtrunA17_Chr7g0234051 36.441 236 100 3 11 198 10 243 6.46e-40 145
Msa1379100 MtrunA17_Chr2g0279371 45.333 150 67 1 16 165 11 145 5.63e-39 135
Msa1379100 MtrunA17_Chr8g0338461 35.366 246 109 3 1 198 1 244 8.52e-39 142
Msa1379100 MtrunA17_Chr7g0234041 30.392 306 145 6 12 249 1 306 2.64e-36 135
Msa1379100 MtrunA17_Chr7g0249431 32.083 240 109 5 11 198 8 245 5.98e-32 123
Msa1379100 MtrunA17_Chr4g0038311 34.591 159 91 5 13 163 9 162 2.86e-20 90.5
Msa1379100 MtrunA17_Chr4g0028271 34.783 115 69 1 51 165 101 209 8.10e-20 89.4
Msa1379100 MtrunA17_Chr2g0327401 38.095 105 60 2 60 164 113 212 8.78e-20 89.4
Msa1379100 MtrunA17_Chr2g0327381 38.261 115 65 3 51 164 98 207 4.02e-19 87.4
Msa1379100 MtrunA17_Chr4g0028281 32.174 115 72 1 51 165 99 207 5.68e-19 86.7
Msa1379100 MtrunA17_Chr1g0153881 42.342 111 58 2 33 142 90 195 5.83e-19 86.7
Msa1379100 MtrunA17_Chr1g0153931 39.286 112 62 2 33 143 76 182 6.83e-19 84.3
Msa1379100 MtrunA17_Chr4g0028241 35.238 105 62 1 60 164 102 200 8.69e-19 86.3
Msa1379100 MtrunA17_Chr3g0131731 35.821 134 78 3 15 147 13 139 1.15e-18 85.9
Msa1379100 MtrunA17_Chr4g0028261 33.913 115 70 1 51 165 122 230 1.38e-18 85.9
Msa1379100 MtrunA17_Chr2g0327371 34.815 135 75 4 36 169 79 201 1.61e-18 85.5
Msa1379100 MtrunA17_Chr8g0385871 37.671 146 76 6 24 162 25 162 1.93e-18 85.1
Msa1379100 MtrunA17_Chr1g0171411 33.333 114 70 1 51 164 87 194 2.99e-18 84.7
Msa1379100 MtrunA17_Chr2g0281621 31.667 180 109 5 5 176 2 175 3.53e-18 84.3
Msa1379100 MtrunA17_Chr2g0309541 33.951 162 86 7 5 155 3 154 6.22e-18 83.6
Msa1379100 MtrunA17_Chr3g0118861 35.833 120 71 2 33 151 76 190 9.55e-18 83.2
Msa1379100 MtrunA17_Chr4g0068841 32.026 153 96 5 13 163 20 166 1.98e-17 82.0
Msa1379100 MtrunA17_Chr2g0309511 31.481 162 94 5 2 151 4 160 2.22e-17 82.0
Msa1379100 MtrunA17_Chr3g0118881 35.385 130 77 3 36 163 81 205 2.53e-17 82.0
Msa1379100 MtrunA17_Chr1g0199171 33.333 114 69 2 51 164 94 200 3.19e-17 81.6
Msa1379100 MtrunA17_Chr1g0153941 38.739 111 62 2 33 142 78 183 4.32e-17 81.3
Msa1379100 MtrunA17_Chr5g0431301 30.380 158 100 4 12 165 6 157 5.13e-17 80.9
Msa1379100 MtrunA17_Chr4g0047861 33.094 139 87 4 32 168 53 187 5.19e-17 80.9
Msa1379100 MtrunA17_Chr4g0068861 32.704 159 90 6 14 162 67 218 5.95e-17 80.9
Msa1379100 MtrunA17_Chr1g0199991 31.724 145 84 4 9 143 2 141 5.96e-17 80.9
Msa1379100 MtrunA17_Chr3g0094811 40.206 97 50 3 51 146 48 137 1.84e-16 79.3
Msa1379100 MtrunA17_Chr3g0118831 33.083 133 82 3 33 163 78 205 3.45e-16 78.6
Msa1379100 MtrunA17_Chr7g0219051 33.088 136 79 4 36 165 39 168 5.98e-16 77.8
Msa1379100 MtrunA17_Chr2g0318911 36.434 129 68 5 36 155 44 167 6.65e-16 77.8
Msa1379100 MtrunA17_Chr2g0309521 29.630 162 97 5 2 151 4 160 7.09e-16 77.4
Msa1379100 MtrunA17_Chr3g0118851 34.615 130 78 3 36 163 81 205 9.67e-16 77.4
Msa1379100 MtrunA17_Chr1g0199971 30.986 142 83 4 12 143 5 141 1.19e-15 77.0
Msa1379100 MtrunA17_Chr3g0118891 35.043 117 70 2 36 151 81 192 1.75e-15 76.3
Msa1379100 MtrunA17_Chr3g0126031 34.307 137 83 3 32 167 28 158 2.64e-15 75.9
Msa1379100 MtrunA17_Chr7g0221551 31.387 137 85 3 11 146 9 137 3.07e-15 75.5
Msa1379100 MtrunA17_Chr2g0304931 35.780 109 59 3 51 158 56 154 3.15e-15 75.5
Msa1379100 MtrunA17_Chr3g0118841 33.077 130 80 3 36 163 82 206 3.97e-15 75.5
Msa1379100 MtrunA17_Chr3g0126051 34.146 123 73 4 32 153 34 149 2.13e-14 73.2
Msa1379100 MtrunA17_Chr1g0165811 34.259 108 57 4 51 157 48 142 2.60e-14 71.6
Msa1379100 MtrunA17_Chr4g0020241 34.783 115 68 3 33 146 74 182 4.83e-14 72.0
Msa1379100 MtrunA17_Chr3g0090331 33.043 115 70 3 33 146 75 183 6.72e-14 71.6
Msa1379100 MtrunA17_Chr1g0204191 32.710 107 60 3 51 156 109 204 1.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379100 AT2G22970.2 42.466 292 116 3 30 269 22 313 2.25e-75 233
Msa1379100 AT2G22920.4 43.003 293 114 4 30 269 22 314 1.26e-74 231
Msa1379100 AT2G22970.4 42.466 292 116 3 30 269 22 313 2.96e-74 233
Msa1379100 AT2G22970.3 42.466 292 116 3 30 269 22 313 5.41e-74 234
Msa1379100 AT2G22970.1 42.466 292 116 3 30 269 22 313 7.04e-74 233
Msa1379100 AT2G22920.1 43.003 293 114 4 30 269 22 314 2.47e-73 231
Msa1379100 AT2G22980.2 43.151 292 118 3 27 270 20 311 2.59e-73 231
Msa1379100 AT2G22980.4 43.151 292 118 3 27 270 20 311 4.82e-73 231
Msa1379100 AT2G22980.1 43.151 292 118 3 27 270 20 311 5.18e-73 231
Msa1379100 AT2G22920.2 43.003 293 114 4 30 269 22 314 5.25e-73 231
Msa1379100 AT2G22980.3 43.197 294 117 4 27 270 20 313 1.40e-72 227
Msa1379100 AT3G10450.4 42.809 299 118 4 25 270 21 319 5.14e-72 228
Msa1379100 AT3G10450.1 42.809 299 118 4 25 270 21 319 1.37e-71 227
Msa1379100 AT1G73290.3 42.905 296 118 3 25 269 24 319 7.25e-71 224
Msa1379100 AT2G23010.2 42.006 319 122 7 10 270 6 319 1.14e-70 225
Msa1379100 AT2G23010.1 42.006 319 122 7 10 270 6 319 1.38e-70 225
Msa1379100 AT1G73290.1 42.905 296 118 3 25 269 24 319 1.65e-70 224
Msa1379100 AT1G73310.2 42.617 298 118 3 25 269 25 322 1.93e-70 224
Msa1379100 AT1G73310.1 42.617 298 118 3 25 269 25 322 2.59e-70 224
Msa1379100 AT1G73300.1 43.279 305 106 5 25 269 25 322 1.34e-69 222
Msa1379100 AT1G73300.2 43.279 305 106 5 25 269 25 322 1.34e-69 222
Msa1379100 AT1G73270.1 43.686 293 112 4 30 269 30 322 1.73e-68 220
Msa1379100 AT1G73270.2 43.686 293 112 4 30 269 30 322 1.77e-68 219
Msa1379100 AT5G09640.1 36.705 346 131 6 12 272 6 348 6.79e-68 219
Msa1379100 AT5G36180.1 43.607 305 105 5 25 269 25 322 6.90e-68 218
Msa1379100 AT1G73280.2 39.564 321 138 4 5 269 2 322 1.36e-67 215
Msa1379100 AT2G22990.4 42.475 299 111 7 30 270 20 315 5.38e-67 215
Msa1379100 AT2G22990.1 42.475 299 111 7 30 270 20 315 7.22e-67 215
Msa1379100 AT2G22990.3 42.475 299 111 7 30 270 20 315 7.53e-67 216
Msa1379100 AT1G73280.1 39.564 321 138 4 5 269 2 322 9.11e-67 215
Msa1379100 AT1G73290.2 45.957 235 79 2 25 211 24 258 2.25e-65 207
Msa1379100 AT1G33540.1 38.750 320 117 4 30 270 26 345 2.31e-65 212
Msa1379100 AT2G23000.1 41.137 299 117 6 30 270 22 319 5.00e-64 208
Msa1379100 AT2G23000.2 41.137 299 117 6 30 270 22 319 5.00e-64 208
Msa1379100 AT3G12240.1 39.274 303 131 4 25 274 20 322 1.74e-63 206
Msa1379100 AT3G10450.3 40.876 274 109 4 50 270 3 276 2.23e-61 199
Msa1379100 AT3G10450.2 40.876 274 109 4 50 270 3 276 5.29e-61 199
Msa1379100 AT2G22990.5 41.137 299 106 8 30 270 20 306 1.55e-60 198
Msa1379100 AT3G12220.1 40.789 304 113 7 27 270 21 317 4.48e-60 197
Msa1379100 AT3G12203.1 36.012 336 111 5 12 270 11 319 3.51e-59 195
Msa1379100 AT3G12230.1 38.047 297 131 4 27 270 21 317 7.86e-59 194
Msa1379100 AT3G12203.3 36.478 318 100 4 30 270 6 298 4.18e-58 192
Msa1379100 AT1G33540.2 37.458 299 108 4 51 270 4 302 7.63e-56 186
Msa1379100 AT3G12220.3 37.329 292 88 3 27 270 21 265 2.75e-55 184
Msa1379100 AT3G12220.2 38.596 285 108 7 46 270 10 287 9.75e-49 167
Msa1379100 AT3G12203.2 32.517 286 91 4 62 270 1 261 7.85e-40 143
Msa1379100 AT4G12910.2 34.307 274 128 5 10 234 11 281 3.41e-38 140
Msa1379100 AT4G12910.1 34.307 274 128 5 10 234 11 281 5.94e-38 140
Msa1379100 AT3G25420.1 32.353 238 111 3 11 200 8 243 3.67e-35 132
Msa1379100 AT1G73310.3 32.273 220 96 3 103 269 1 220 2.77e-25 103
Msa1379100 AT5G36180.2 33.921 227 83 5 103 269 1 220 3.93e-24 100
Msa1379100 AT5G36180.4 33.921 227 83 5 103 269 1 220 5.65e-24 100
Msa1379100 AT5G36180.5 33.921 227 83 5 103 269 1 220 6.31e-24 99.8
Msa1379100 AT5G36180.3 33.921 227 83 5 103 269 1 220 6.31e-24 99.8
Msa1379100 AT1G73280.4 30.909 220 99 3 103 269 1 220 5.32e-22 94.4
Msa1379100 AT5G23210.3 36.054 147 83 5 23 163 38 179 1.12e-20 92.0
Msa1379100 AT5G23210.1 36.054 147 83 5 23 163 38 179 1.52e-20 91.7
Msa1379100 AT1G28110.1 38.406 138 75 4 33 168 32 161 1.07e-19 89.4
Msa1379100 AT1G28110.2 38.406 138 75 4 33 168 32 161 1.07e-19 89.4
Msa1379100 AT3G52020.1 40.000 115 63 2 32 146 79 187 3.61e-19 87.8
Msa1379100 AT5G22980.1 35.965 114 66 2 51 164 102 208 1.66e-18 85.9
Msa1379100 AT2G22980.5 30.412 194 87 3 125 270 1 194 2.01e-18 84.0
Msa1379100 AT2G33530.1 38.519 135 73 5 36 168 37 163 7.17e-18 84.0
Msa1379100 AT3G56540.1 33.913 115 70 2 32 146 79 187 1.02e-17 81.3
Msa1379100 AT4G30810.1 33.333 138 84 3 15 149 18 150 1.20e-17 83.2
Msa1379100 AT2G22990.6 31.863 204 78 7 125 270 1 201 3.58e-17 80.9
Msa1379100 AT2G22990.2 31.863 204 78 7 125 270 1 201 3.68e-17 80.9
Msa1379100 AT3G52000.1 30.303 132 87 1 32 163 63 189 3.92e-17 81.6
Msa1379100 AT3G63470.1 33.333 120 73 3 32 150 81 194 4.88e-17 81.6
Msa1379100 AT3G10410.1 34.211 114 68 2 51 164 103 209 7.06e-17 80.9
Msa1379100 AT3G45010.1 36.190 105 60 2 60 164 114 211 1.25e-16 80.5
Msa1379100 AT4G15100.1 30.189 159 92 4 1 146 1 153 2.91e-16 79.3
Msa1379100 AT2G22920.3 39.823 113 62 3 165 271 25 137 2.93e-16 77.0
Msa1379100 AT1G43780.1 34.559 136 82 3 31 165 36 165 3.23e-16 79.0
Msa1379100 AT1G11080.2 34.286 140 84 5 26 163 44 177 5.11e-16 78.6
Msa1379100 AT1G11080.1 34.286 140 84 5 26 163 44 177 5.43e-16 78.6
Msa1379100 AT2G24010.1 38.017 121 68 4 32 151 30 144 9.03e-16 77.8
Msa1379100 AT1G61130.1 31.250 176 110 5 32 205 31 197 1.04e-15 77.4
Msa1379100 AT2G12480.1 34.307 137 83 3 32 167 31 161 1.45e-15 77.0
Msa1379100 AT2G12480.2 34.307 137 83 3 32 167 31 161 1.47e-15 77.0
Msa1379100 AT2G12480.4 34.307 137 83 3 32 167 31 161 1.49e-15 77.0
Msa1379100 AT3G52010.1 34.821 112 68 2 32 143 64 170 1.69e-15 77.0
Msa1379100 AT2G12480.3 34.307 137 83 3 32 167 31 161 1.71e-15 77.0
Msa1379100 AT4G30610.1 37.190 121 68 5 33 151 33 147 1.99e-15 76.6
Msa1379100 AT5G42230.1 34.815 135 81 3 32 165 28 156 2.68e-15 76.3
Msa1379100 AT5G42230.2 34.815 135 81 3 32 165 28 156 2.68e-15 76.3
Msa1379100 AT2G24000.1 37.302 126 66 5 33 151 31 150 3.20e-15 75.9
Msa1379100 AT5G08260.1 37.719 114 63 5 32 143 39 146 4.28e-15 75.9
Msa1379100 AT5G42240.1 33.577 137 84 3 32 167 32 162 6.19e-15 75.1
Msa1379100 AT3G02110.1 33.813 139 76 5 36 164 41 173 1.60e-14 73.9
Msa1379100 AT3G17180.2 31.897 116 71 5 51 163 57 167 1.92e-14 73.6
Msa1379100 AT3G17180.1 31.897 116 71 5 51 163 57 167 2.11e-14 73.6
Msa1379100 AT3G07990.1 34.211 114 67 3 36 146 37 145 2.21e-14 73.6
Msa1379100 AT2G35780.1 35.088 114 66 3 36 146 33 141 2.37e-14 73.6
Msa1379100 AT2G05850.1 29.927 137 86 3 32 163 63 194 3.83e-14 72.8
Msa1379100 AT2G35770.1 34.426 122 69 3 36 151 41 157 1.08e-13 71.6
Msa1379100 AT5G22960.1 26.316 114 59 2 51 164 38 126 9.96e-11 60.5

Find 69 sgRNAs with CRISPR-Local

Find 656 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTACTAAATATGAAAATT+TGG 0.172062 tig0020262:+115391 Msa1379100:intergenic
ACAAAGTTTAGTTCAACTTA+TGG 0.250544 tig0020262:-115273 Msa1379100:CDS
CAATAACCCATGAGGAAATA+TGG 0.267050 tig0020262:+106077 Msa1379100:intergenic
CATATTTCCTCATGGGTTAT+TGG 0.274804 tig0020262:-106076 Msa1379100:CDS
TCTGGTCTAATGCTTGAAAT+TGG 0.287626 tig0020262:-114925 Msa1379100:intron
ATATTTCCTCATGGGTTATT+GGG 0.296825 tig0020262:-106075 Msa1379100:CDS
AAATTTGTCATAAATATAAA+TGG 0.320056 tig0020262:-115465 Msa1379100:five_prime_UTR
TATTATATTTGTAGATTTGC+CGG 0.329137 tig0020262:-113782 Msa1379100:CDS
GAGATTTGTGTTGAGGAAAT+TGG 0.349292 tig0020262:+106234 Msa1379100:intergenic
CAAAGTTTAGTTCAACTTAT+GGG 0.357058 tig0020262:-115272 Msa1379100:CDS
AGGATGATCCTCTCATACTA+TGG 0.360528 tig0020262:-114978 Msa1379100:CDS
TTTCTTCAGGGATACTTGTT+GGG 0.364854 tig0020262:-107281 Msa1379100:intron
TTTGCGAACATTATCATCAT+TGG 0.369155 tig0020262:+106052 Msa1379100:intergenic
CCTGGTTGCTCTGCTTTGTC+TGG 0.374838 tig0020262:-114943 Msa1379100:CDS
TCTATAGTGAAGTTTCTTCC+TGG 0.395633 tig0020262:-115186 Msa1379100:CDS
CCTCTCATACTATGGCTAAC+TGG 0.396512 tig0020262:-114970 Msa1379100:CDS
CTTTCTTCAGGGATACTTGT+TGG 0.403695 tig0020262:-107282 Msa1379100:intron
TGATCTTGAGGCAACATTCA+TGG 0.408972 tig0020262:-113946 Msa1379100:CDS
GCACAAAAGGAAGGGGTCCT+TGG 0.428977 tig0020262:+115160 Msa1379100:intergenic
ATATTTGTTGTTAAGGTATG+TGG 0.432299 tig0020262:-115064 Msa1379100:intron
ACCAAGTTCATCAATTTCTC+AGG 0.441699 tig0020262:-113693 Msa1379100:CDS
TTGTTAAGGTATGTGGGAGT+TGG 0.444634 tig0020262:-115057 Msa1379100:intron
AGTATGAGAGGATCATCCTT+TGG 0.453644 tig0020262:+114982 Msa1379100:intergenic
TAAGTGAAGCCTGTGGAAAC+CGG 0.454907 tig0020262:+113763 Msa1379100:intergenic
AGTCCCATTCCATGAGCAAA+AGG 0.456013 tig0020262:+107218 Msa1379100:intergenic
AACCTGGTTTCAAGCACAAA+AGG 0.460586 tig0020262:+115147 Msa1379100:intergenic
GGAAGGGGTCCTTGGAATCC+AGG 0.464903 tig0020262:+115168 Msa1379100:intergenic
AACATGTCAAAACATTCTTT+AGG 0.471328 tig0020262:+104983 Msa1379100:intergenic
TGTTGCCTCAAGATCAGATT+AGG 0.476145 tig0020262:+113953 Msa1379100:intergenic
TCCTGAGAAATTGATGAACT+TGG 0.480271 tig0020262:+113692 Msa1379100:intergenic
CATTCTTTAGGCCGGTACTC+TGG 0.485777 tig0020262:+104995 Msa1379100:intergenic
TTTCAAGCCACTCGCAACTC+GGG 0.497080 tig0020262:+106293 Msa1379100:intergenic
TATTTGTTGTTAAGGTATGT+GGG 0.503693 tig0020262:-115063 Msa1379100:intron
ACTTATGCCACAGCAGAATC+CGG 0.506910 tig0020262:-113745 Msa1379100:CDS
AAGTTTCTTCCTGGATTCCA+AGG 0.510461 tig0020262:-115177 Msa1379100:CDS
GTAGATTTGCCGGTTTCCAC+AGG 0.511485 tig0020262:-113772 Msa1379100:CDS
TGCTTTCAAGTTGCAACATG+TGG 0.513785 tig0020262:-115210 Msa1379100:CDS
GACACACAGCTCCAGAGTAC+CGG 0.518961 tig0020262:-105006 Msa1379100:CDS
AGTTATCCATATTTCCTCAT+GGG 0.521327 tig0020262:-106083 Msa1379100:CDS
GAGTTATCCATATTTCCTCA+TGG 0.523834 tig0020262:-106084 Msa1379100:CDS
CTATGGCTAACTGGTGGACC+TGG 0.525006 tig0020262:-114961 Msa1379100:CDS
TTCTTCAGGGATACTTGTTG+GGG 0.528905 tig0020262:-107280 Msa1379100:intron
ATTACTCGACAGCTTAAAAG+TGG 0.540742 tig0020262:+106205 Msa1379100:intergenic
GGTTTCAAGCACAAAAGGAA+GGG 0.546029 tig0020262:+115152 Msa1379100:intergenic
TGTGGGAGTTGGTGAGAAAG+AGG 0.550305 tig0020262:-115046 Msa1379100:CDS
TGTCAAAACATTCTTTAGGC+CGG 0.556404 tig0020262:+104987 Msa1379100:intergenic
GCAATTTGAGATTTGTGTTG+AGG 0.557107 tig0020262:+106227 Msa1379100:intergenic
TGGTTTCAAGCACAAAAGGA+AGG 0.558434 tig0020262:+115151 Msa1379100:intergenic
GTTTAGTTCAACTTATGGGA+AGG 0.563304 tig0020262:-115268 Msa1379100:CDS
CCAGTTAGCCATAGTATGAG+AGG 0.570952 tig0020262:+114970 Msa1379100:intergenic
ATTTGTGTTGAGGAAATTGG+TGG 0.579479 tig0020262:+106237 Msa1379100:intergenic
GAATGCTGCAACAACCAGAA+AGG 0.579584 tig0020262:-107258 Msa1379100:CDS
AGTTCATCAATTTCTCAGGA+AGG 0.588723 tig0020262:-113689 Msa1379100:intron
GTCCCATTCCATGAGCAAAA+GGG 0.589244 tig0020262:+107219 Msa1379100:intergenic
AATTACGTCGTATAGTTCAT+CGG 0.595080 tig0020262:+107190 Msa1379100:intergenic
TTTAGCACCGGATTCTGCTG+TGG 0.596870 tig0020262:+113738 Msa1379100:intergenic
GTCTACCTAATCTGATCTTG+AGG 0.598449 tig0020262:-113958 Msa1379100:CDS
GTTTCAAGCACAAAAGGAAG+GGG 0.604176 tig0020262:+115153 Msa1379100:intergenic
TGAATCGCTTCGTTTAGCAC+CGG 0.613421 tig0020262:+113726 Msa1379100:intergenic
CCAGACAAAGCAGAGCAACC+AGG 0.613500 tig0020262:+114943 Msa1379100:intergenic
TGAATCAGAAAAGAATCCAA+AGG 0.623512 tig0020262:-114998 Msa1379100:CDS
CTCATACTATGGCTAACTGG+TGG 0.626625 tig0020262:-114967 Msa1379100:CDS
CAAAGCGCTACATATTCAGA+AGG 0.633829 tig0020262:-106033 Msa1379100:intron
TTATAGACCCGAGTTGCGAG+TGG 0.649508 tig0020262:-106300 Msa1379100:CDS
GAGGCAACATTCATGGACAA+AGG 0.660602 tig0020262:-113939 Msa1379100:intron
AGTGGCTTGAAAATTCTCCA+AGG 0.665223 tig0020262:-106282 Msa1379100:CDS
CATTGGCCCAATAACCCATG+AGG 0.706316 tig0020262:+106069 Msa1379100:intergenic
GTGTCAAGAACAATATTGAG+TGG 0.725137 tig0020262:-115433 Msa1379100:five_prime_UTR
TGTGGCATAAGTGAAGCCTG+TGG 0.758304 tig0020262:+113756 Msa1379090:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - tig0020262:115460-115479 Msa1379100:five_prime_UTR 0.0%
!! ATATATATATATATATATAT+GGG - tig0020262:115461-115480 Msa1379100:five_prime_UTR 0.0%
!! AAATTTGTCATAAATATAAA+TGG - tig0020262:104900-104919 Msa1379100:three_prime_UTR 10.0%
!!! AGTTTTTTTTTAATCTATTA+TGG - tig0020262:105257-105276 Msa1379100:intron 10.0%
!! TTATTAACAAAAATTTCAAT+TGG + tig0020262:105517-105536 Msa1379100:intergenic 10.0%
!!! TGAATTTTAATTACTTATAA+TGG - tig0020262:105708-105727 Msa1379100:intron 10.0%
!! ATATAAATACATGATTTAAA+AGG + tig0020262:106524-106543 Msa1379100:intergenic 10.0%
!! ATTGTTTAATTATATAACTT+TGG + tig0020262:108672-108691 Msa1379100:intergenic 10.0%
!!! AATTACTTCAATTTTTATTT+AGG + tig0020262:110074-110093 Msa1379100:intergenic 10.0%
!!! TATATTATTTTAAAGAGAAA+TGG - tig0020262:112133-112152 Msa1379100:intron 10.0%
!! TTAAAAGTCAAAAAAAAATT+CGG - tig0020262:113669-113688 Msa1379100:intron 10.0%
!!! AATTAAAACTGAAAAATTTT+CGG - tig0020262:113706-113725 Msa1379100:CDS 10.0%
!!! ATATAATAAGAGTTTATTTT+TGG + tig0020262:115445-115464 Msa1379100:intergenic 10.0%
!! TACTACTAAATATGAAAATT+TGG + tig0020262:104977-104996 Msa1379100:intergenic 15.0%
!! TGTTAATAAAGAAAAATGAA+TGG - tig0020262:105528-105547 Msa1379100:intron 15.0%
!! GTTAATAAAGAAAAATGAAT+GGG - tig0020262:105529-105548 Msa1379100:intron 15.0%
!! TAAATCATGTATTTATATAC+TGG - tig0020262:106526-106545 Msa1379100:intron 15.0%
!!! TATTTATAAGATTTTTTCCT+TGG - tig0020262:106549-106568 Msa1379100:intron 15.0%
!! TATATAAACACTTACTAATT+GGG + tig0020262:106881-106900 Msa1379100:intergenic 15.0%
!! ATATATAAACACTTACTAAT+TGG + tig0020262:106882-106901 Msa1379100:intergenic 15.0%
!! AATTAGTAAGTGTTTATATA+TGG - tig0020262:106881-106900 Msa1379100:intron 15.0%
!! ATTAGTAAGTGTTTATATAT+GGG - tig0020262:106882-106901 Msa1379100:intron 15.0%
!!! TATTATTTTAAAGAGATCAA+TGG - tig0020262:107480-107499 Msa1379100:intron 15.0%
!!! TAATACCATATTAATTTGAA+CGG - tig0020262:107611-107630 Msa1379100:intron 15.0%
!! ATTTATCCTTAATGTATTTA+GGG + tig0020262:107997-108016 Msa1379100:intergenic 15.0%
!! CAAAACATAAAAAAATTGTT+TGG - tig0020262:108213-108232 Msa1379100:intron 15.0%
!! AGAAAATAAAATAATGCATA+AGG - tig0020262:108239-108258 Msa1379100:intron 15.0%
!! TTATTGCATATTTATAAGTT+TGG + tig0020262:108382-108401 Msa1379100:intergenic 15.0%
!! AAACTTATAAATATGCAATA+AGG - tig0020262:108381-108400 Msa1379100:intron 15.0%
!! TCATATAAATTAGAATTTAG+AGG - tig0020262:108728-108747 Msa1379100:intron 15.0%
!!! ACTAGTTCTTAATTTTTAAA+GGG + tig0020262:109254-109273 Msa1379100:intergenic 15.0%
!! TTTAAAAATTAAGAACTAGT+GGG - tig0020262:109254-109273 Msa1379100:intron 15.0%
!!! TTAAGGATATAACTTTTTTA+AGG + tig0020262:109424-109443 Msa1379100:intergenic 15.0%
!! TAAAAAAGTTATATCCTTAA+TGG - tig0020262:109424-109443 Msa1379100:intron 15.0%
!!! ATTTGGATTTTTGAAAAAAA+AGG - tig0020262:109555-109574 Msa1379100:intron 15.0%
!! ATAAAAATTGAAGTAATTCT+TGG - tig0020262:110076-110095 Msa1379100:intron 15.0%
!!! TAATACCATATTAATTTGAA+CGG - tig0020262:107611-107630 Msa1379100:intron 15.0%
!!! TTTTTGTTATTGTTGTTTTT+TGG + tig0020262:112576-112595 Msa1379100:intergenic 15.0%
!!! ATTAAAACTGAAAAATTTTC+GGG - tig0020262:113707-113726 Msa1379100:CDS 15.0%
!!! AAACTGAATTTTTTTTTTGA+AGG - tig0020262:113733-113752 Msa1379100:CDS 15.0%
!! AAAAACAAAAAAAATAAGTC+AGG - tig0020262:113760-113779 Msa1379100:CDS 15.0%
!! AAAACAAAAAAAATAAGTCA+GGG - tig0020262:113761-113780 Msa1379100:CDS 15.0%
!! TGAAATTTGACAAAAATAAA+AGG + tig0020262:113964-113983 Msa1379100:intergenic 15.0%
!!! ATTTTCCATAAGAAAAATAT+AGG + tig0020262:114720-114739 Msa1379100:intergenic 15.0%
!! TTTGATATTTATAATAACAG+CGG - tig0020262:114743-114762 Msa1379100:intron 15.0%
!! GTTATTAAATATAACCATTA+TGG - tig0020262:114914-114933 Msa1379100:intron 15.0%
!!! TTATGATTATGAATTTGTTT+AGG + tig0020262:115272-115291 Msa1379100:intergenic 15.0%
!!! CATATTCATATTTGTTGTTA+AGG - tig0020262:105294-105313 Msa1379100:intron 20.0%
!!! AAACATAAACATTTTCTCAA+AGG - tig0020262:106087-106106 Msa1379100:intron 20.0%
!! TAGATATAATTCATCTTTGT+AGG - tig0020262:106240-106259 Msa1379100:CDS 20.0%
!! AAGACATTCAAATCAAAATT+AGG - tig0020262:106264-106283 Msa1379100:CDS 20.0%
!! GATCAAATTGTAAATGTTAT+AGG - tig0020262:106349-106368 Msa1379100:intron 20.0%
!! ACTATGGATAACAAAAAATA+TGG + tig0020262:106465-106484 Msa1379100:intergenic 20.0%
!!! TTATCCATAGTTAGATTTTT+CGG - tig0020262:106474-106493 Msa1379100:intron 20.0%
!! TATTATATTTGTAGATTTGC+CGG - tig0020262:106583-106602 Msa1379100:intron 20.0%
!! TTAATTCTAGTGAAGAAAAT+TGG - tig0020262:106786-106805 Msa1379100:intron 20.0%
!! ATATAAACACTTACTAATTG+GGG + tig0020262:106880-106899 Msa1379100:intergenic 20.0%
!! AAGAATCATATATTATCGAA+GGG + tig0020262:107402-107421 Msa1379100:intergenic 20.0%
!! TTCGATAATATATGATTCTT+CGG - tig0020262:107402-107421 Msa1379100:intron 20.0%
!! GTATTATTACCATTCTATTA+TGG + tig0020262:107597-107616 Msa1379100:intergenic 20.0%
!! GAAATTCAAATTTAACAGTT+TGG - tig0020262:107893-107912 Msa1379100:intron 20.0%
!!! GTCTTAAAATTGTTGTTTTT+TGG + tig0020262:107923-107942 Msa1379100:intergenic 20.0%
!! GATTTATCCTTAATGTATTT+AGG + tig0020262:107998-108017 Msa1379100:intergenic 20.0%
!! TATGCAATAAGGAAAATAAA+TGG - tig0020262:108392-108411 Msa1379100:intron 20.0%
!!! ATTTTAAAACTTGAGTAACT+TGG - tig0020262:108638-108657 Msa1379100:intron 20.0%
!!! CACTAGTTCTTAATTTTTAA+AGG + tig0020262:109255-109274 Msa1379100:intergenic 20.0%
!!! CTTTAAAAATTAAGAACTAG+TGG - tig0020262:109253-109272 Msa1379100:intron 20.0%
!! TTAAAAATTAAGAACTAGTG+GGG - tig0020262:109255-109274 Msa1379100:intron 20.0%
!! AGTAACATATTGTACTTAAA+TGG - tig0020262:110425-110444 Msa1379100:intron 20.0%
!! ATTAAGAATCGTTATTACAA+TGG - tig0020262:110707-110726 Msa1379100:intron 20.0%
!!! TAAGATTTGCTAATATACAA+AGG + tig0020262:111362-111381 Msa1379100:intergenic 20.0%
!! TTGTATATTAGCAAATCTTA+TGG - tig0020262:111362-111381 Msa1379100:intron 20.0%
!! TTAATTCTAGTGAAGAAAAT+TGG - tig0020262:106786-106805 Msa1379100:intron 20.0%
!! TATATAAACACTTACTAGTT+GGG + tig0020262:111543-111562 Msa1379100:intergenic 20.0%
!! ATATATAAACACTTACTAGT+TGG + tig0020262:111544-111563 Msa1379100:intergenic 20.0%
!! AACTAGTAAGTGTTTATATA+TGG - tig0020262:111543-111562 Msa1379100:intron 20.0%
!! ACTAGTAAGTGTTTATATAT+GGG - tig0020262:111544-111563 Msa1379100:intron 20.0%
!! AAGAATCATATATTATCGAA+GGG + tig0020262:107402-107421 Msa1379100:intergenic 20.0%
!! TTCGATAATATATGATTCTT+CGG - tig0020262:107402-107421 Msa1379100:intron 20.0%
!!! ATTATTTTAAAGAGAAATGG+TGG - tig0020262:112136-112155 Msa1379100:intron 20.0%
!! GTATTATTACCATTCTATTA+TGG + tig0020262:107597-107616 Msa1379100:intergenic 20.0%
!! GAAATTCAAATTTAACAGTT+TGG - tig0020262:107893-107912 Msa1379100:intron 20.0%
!!! TTATGCATAAATTTTTGTAG+TGG - tig0020262:112601-112620 Msa1379100:intron 20.0%
!!! ACTTCATTTGATTGAAATTT+TGG + tig0020262:112639-112658 Msa1379100:intergenic 20.0%
!! AAACAAAAAAAATAAGTCAG+GGG - tig0020262:113762-113781 Msa1379100:CDS 20.0%
!! TTTAACTGATTAAACTTTGT+AGG - tig0020262:113859-113878 Msa1379100:intron 20.0%
!! TTAACTGATTAAACTTTGTA+GGG - tig0020262:113860-113879 Msa1379100:intron 20.0%
!!! ACTTTTTTAATGGAAAATAG+AGG + tig0020262:114449-114468 Msa1379100:intergenic 20.0%
!!! AATGTGAAGAACTTTTTTAA+TGG + tig0020262:114459-114478 Msa1379100:intergenic 20.0%
!! TTTCTTATGAGGTATATTAA+AGG + tig0020262:114581-114600 Msa1379100:intergenic 20.0%
!! AAACAAATGTTAATTCAACT+TGG + tig0020262:114952-114971 Msa1379100:intergenic 20.0%
!!! CATTCATATTATCTTGTTTA+AGG + tig0020262:115043-115062 Msa1379100:intergenic 20.0%
!! CTTAAACAAGATAATATGAA+TGG - tig0020262:115041-115060 Msa1379100:CDS 20.0%
!!! GTGCTTATTGTTAATTTTTA+AGG + tig0020262:115089-115108 Msa1379100:intergenic 20.0%
!! CATAATCATAATCATGTATT+CGG - tig0020262:115281-115300 Msa1379100:exon 20.0%
!!! TATTGATTGATCAAATTTTC+AGG - tig0020262:115330-115349 Msa1379100:five_prime_UTR 20.0%
!!! ATTGATTGATCAAATTTTCA+GGG - tig0020262:115331-115350 Msa1379100:five_prime_UTR 20.0%
! AGTACTCATAAAGAAAAAGA+GGG - tig0020262:105048-105067 Msa1379100:intron 25.0%
!! ACAAAGTTTAGTTCAACTTA+TGG - tig0020262:105092-105111 Msa1379100:intron 25.0%
!! CAAAGTTTAGTTCAACTTAT+GGG - tig0020262:105093-105112 Msa1379100:intron 25.0%
!!! ATATTTGTTGTTAAGGTATG+TGG - tig0020262:105301-105320 Msa1379100:intron 25.0%
!!! TATTTGTTGTTAAGGTATGT+GGG - tig0020262:105302-105321 Msa1379100:intron 25.0%
!! CTTTTCAAATTGTTCACTTT+TGG - tig0020262:105476-105495 Msa1379100:intron 25.0%
! TCTTTGTTACTAAATGTTCA+TGG - tig0020262:106150-106169 Msa1379100:intron 25.0%
! AAATCTTCACCAACTATATA+GGG + tig0020262:106219-106238 Msa1379100:intergenic 25.0%
! TTAAAAAAGGAGGAATACAA+TGG - tig0020262:106382-106401 Msa1379100:intron 25.0%
! TAAAAAAGGAGGAATACAAT+GGG - tig0020262:106383-106402 Msa1379100:intron 25.0%
! AAAACCGAAAAATCTAACTA+TGG + tig0020262:106481-106500 Msa1379100:intergenic 25.0%
! AATTGGAAAGAAAAACACTA+TGG - tig0020262:106803-106822 Msa1379100:intron 25.0%
! GTTTCTTAATTGGATATATC+CGG + tig0020262:107121-107140 Msa1379100:intergenic 25.0%
!!! GAAACTTGTTAAAAACAAGT+CGG + tig0020262:107300-107319 Msa1379100:intergenic 25.0%
! GAAGAATCATATATTATCGA+AGG + tig0020262:107403-107422 Msa1379100:intergenic 25.0%
!!! TATTTTAAAGAGATCAATGG+TGG - tig0020262:107483-107502 Msa1379100:intron 25.0%
!!! ATAAGGCTGTTATTTTGTTT+TGG - tig0020262:108256-108275 Msa1379100:intron 25.0%
!! GAATTTTTGTTCTTAGACTT+GGG + tig0020262:108922-108941 Msa1379100:intergenic 25.0%
!! AGAATTTTTGTTCTTAGACT+TGG + tig0020262:108923-108942 Msa1379100:intergenic 25.0%
! AGTTCAAAAATAAGACAAGT+TGG + tig0020262:108975-108994 Msa1379100:intergenic 25.0%
!!! ACTTGTCTTATTTTTGAACT+TGG - tig0020262:108975-108994 Msa1379100:intron 25.0%
!!! CTTGTCTTATTTTTGAACTT+GGG - tig0020262:108976-108995 Msa1379100:intron 25.0%
! CGATAAATAACGAAACATAT+AGG - tig0020262:109083-109102 Msa1379100:intron 25.0%
! CTATGATCACTTTAACATTT+AGG + tig0020262:109117-109136 Msa1379100:intergenic 25.0%
! TAAAAATTAAGAACTAGTGG+GGG - tig0020262:109256-109275 Msa1379100:intron 25.0%
! TATGAACTTGGTTTATACAT+TGG - tig0020262:109382-109401 Msa1379100:intron 25.0%
! AGGAACAATAAATGATGAAA+TGG - tig0020262:109463-109482 Msa1379100:intron 25.0%
! AAAAAGGAACTAAAACTTGA+TGG - tig0020262:109571-109590 Msa1379100:intron 25.0%
!! ATGGATATTATTTTCGTGAT+AGG + tig0020262:109680-109699 Msa1379100:intergenic 25.0%
!! ATGTGAAAGTTGTCTTTTTA+TGG - tig0020262:109753-109772 Msa1379100:intron 25.0%
!! CATGAATTGCAAAAATTTTC+AGG + tig0020262:109810-109829 Msa1379100:intergenic 25.0%
!! CTGAAAATTTTTGCAATTCA+TGG - tig0020262:109808-109827 Msa1379100:intron 25.0%
! AATATGTGATTGCAAGTTTA+CGG + tig0020262:110187-110206 Msa1379100:intergenic 25.0%
!! TTTAGAATACACCTATGAAA+AGG - tig0020262:111233-111252 Msa1379100:intron 25.0%
! AATTGGAAAGAAAAACACTA+TGG - tig0020262:106803-106822 Msa1379100:intron 25.0%
! ATATAAACACTTACTAGTTG+GGG + tig0020262:111542-111561 Msa1379100:intergenic 25.0%
! GTTTCTTAATTGGATATATC+CGG + tig0020262:107121-107140 Msa1379100:intergenic 25.0%
!!! GAAACTTGTTAAAAACAAGT+CGG + tig0020262:107300-107319 Msa1379100:intergenic 25.0%
! GAAGAATCATATATTATCGA+AGG + tig0020262:107403-107422 Msa1379100:intergenic 25.0%
! CAATTTGATTATGTTACCAT+TGG - tig0020262:112745-112764 Msa1379100:intron 25.0%
!! GAAGAAAGTGTAATATTTCA+TGG + tig0020262:113071-113090 Msa1379100:intergenic 25.0%
! TGAAATATTACACTTTCTTC+AGG - tig0020262:113071-113090 Msa1379100:intron 25.0%
! GAAATATTACACTTTCTTCA+GGG - tig0020262:113072-113091 Msa1379100:intron 25.0%
! TCACTGCAAAAAAATTGTAA+AGG - tig0020262:113279-113298 Msa1379100:intron 25.0%
! TTAACTGATTAAACTTTGCA+GGG + tig0020262:113484-113503 Msa1379100:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG + tig0020262:113485-113504 Msa1379100:intergenic 25.0%
! TCAAATTAACAAAATGGCAT+GGG + tig0020262:113802-113821 Msa1379100:intergenic 25.0%
! ATCAAATTAACAAAATGGCA+TGG + tig0020262:113803-113822 Msa1379100:intergenic 25.0%
! ACGTCATCAAATTAACAAAA+TGG + tig0020262:113808-113827 Msa1379100:intergenic 25.0%
! TAACTGATTAAACTTTGTAG+GGG - tig0020262:113861-113880 Msa1379100:intron 25.0%
!! TTTTTCATTAGAGATTTCCT+TGG + tig0020262:114103-114122 Msa1379100:intergenic 25.0%
! CAAGCTAACAAAATATTTCA+AGG + tig0020262:114236-114255 Msa1379100:intergenic 25.0%
! ATACTTTGATAAACAACATG+AGG + tig0020262:114396-114415 Msa1379100:intergenic 25.0%
!! CTAGTCCTATATTTTTCTTA+TGG - tig0020262:114712-114731 Msa1379100:intron 25.0%
!! TGATATGACAATTCCATTTT+TGG - tig0020262:114772-114791 Msa1379100:intron 25.0%
! GGTCATATATAAATCCATAA+TGG + tig0020262:114931-114950 Msa1379100:intergenic 25.0%
!!! TGTTAATTTTTAAGGCAAAC+CGG + tig0020262:115081-115100 Msa1379100:intergenic 25.0%
! AACATGTCAAAACATTCTTT+AGG + tig0020262:115385-115404 Msa1379100:intergenic 25.0%
!!! AATGTTTTGACATGTTTAGT+AGG - tig0020262:115389-115408 Msa1379100:five_prime_UTR 25.0%
GAGTACTCATAAAGAAAAAG+AGG - tig0020262:105047-105066 Msa1379100:intron 30.0%
TGAATCAGAAAAGAATCCAA+AGG - tig0020262:105367-105386 Msa1379100:intron 30.0%
TATTTGTAGACTTTCGTGTT+AGG + tig0020262:105826-105845 Msa1379100:intergenic 30.0%
! ACTGGATTATGTTAGTTTCT+AGG - tig0020262:105933-105952 Msa1379100:intron 30.0%
! CTGGATTATGTTAGTTTCTA+GGG - tig0020262:105934-105953 Msa1379100:intron 30.0%
CAACTATATAGGGCTTAATT+AGG + tig0020262:106209-106228 Msa1379100:intergenic 30.0%
CTAATTAAGCCCTATATAGT+TGG - tig0020262:106207-106226 Msa1379100:intron 30.0%
GAAATCTTCACCAACTATAT+AGG + tig0020262:106220-106239 Msa1379100:intergenic 30.0%
!!! TATAAGATTTTTTCCTTGGC+AGG - tig0020262:106553-106572 Msa1379100:intron 30.0%
GTAAATCAGTCAATAACTGT+TGG - tig0020262:106755-106774 Msa1379100:intron 30.0%
TATGGAAAAAACTAGTGTGT+GGG - tig0020262:106821-106840 Msa1379100:intron 30.0%
TAAAAATGTCCCACATTGAA+CGG - tig0020262:106851-106870 Msa1379100:intron 30.0%
!!! AACGCGTTTTGTTTCTTAAT+TGG + tig0020262:107131-107150 Msa1379100:intergenic 30.0%
TAACAAAAAACGAGTGACTT+GGG + tig0020262:107180-107199 Msa1379100:intergenic 30.0%
TACAAACTCTCCCTATAAAA+AGG - tig0020262:107198-107217 Msa1379100:CDS 30.0%
! TTCGGTGTAAAGAATCAAAT+GGG + tig0020262:107233-107252 Msa1379100:intergenic 30.0%
! TTTCGGTGTAAAGAATCAAA+TGG + tig0020262:107234-107253 Msa1379100:intergenic 30.0%
! ATAGTGCCATATTCATGTTT+TGG - tig0020262:107527-107546 Msa1379100:intron 30.0%
ACTTCTCCAAAACATGAATA+TGG + tig0020262:107536-107555 Msa1379100:intergenic 30.0%
!!! ATGTTTTGGAGAAGTTAGAA+TGG - tig0020262:107541-107560 Msa1379100:intron 30.0%
CGAAACCGTTCAAATTAATA+TGG + tig0020262:107619-107638 Msa1379100:intergenic 30.0%
AGAATTACACCCTCAAAATA+TGG + tig0020262:107691-107710 Msa1379100:intergenic 30.0%
ACCTCAATATGTAACTTCTT+CGG + tig0020262:107966-107985 Msa1379100:intergenic 30.0%
AGTTGTCCCTAAATACATTA+AGG - tig0020262:107988-108007 Msa1379100:intron 30.0%
TAAACATTGATATCACGTAC+TGG - tig0020262:108301-108320 Msa1379100:intron 30.0%
TGAAAAAGATTGCACTTTGA+TGG - tig0020262:108525-108544 Msa1379100:intron 30.0%
CACACAACTAATAACATAGA+AGG + tig0020262:108572-108591 Msa1379100:intergenic 30.0%
! TTATTGATGACTGTGAACTT+TGG - tig0020262:108832-108851 Msa1379100:intron 30.0%
! TATTGATGACTGTGAACTTT+GGG - tig0020262:108833-108852 Msa1379100:intron 30.0%
TCTGAACTATACTTAGATTC+TGG - tig0020262:109003-109022 Msa1379100:intron 30.0%
GCCTATGAATATGTATTCAT+CGG - tig0020262:109055-109074 Msa1379100:intron 30.0%
CCTATGAATATGTATTCATC+GGG - tig0020262:109056-109075 Msa1379100:intron 30.0%
CCACTATTCTTTAGTTAAAG+GGG + tig0020262:109175-109194 Msa1379100:intergenic 30.0%
CCCACTATTCTTTAGTTAAA+GGG + tig0020262:109176-109195 Msa1379100:intergenic 30.0%
CCCTTTAACTAAAGAATAGT+GGG - tig0020262:109173-109192 Msa1379100:intron 30.0%
CCTTTAACTAAAGAATAGTG+GGG - tig0020262:109174-109193 Msa1379100:intron 30.0%
CTTTAACTAAAGAATAGTGG+GGG - tig0020262:109175-109194 Msa1379100:intron 30.0%
! ATTGCTAAAGAGTATGAACT+TGG - tig0020262:109370-109389 Msa1379100:intron 30.0%
AAAATCCAAATACAACCGAT+TGG + tig0020262:109546-109565 Msa1379100:intergenic 30.0%
TACTATCGAGTTATAAATGG+CGG + tig0020262:109723-109742 Msa1379100:intergenic 30.0%
GAGTACTATCGAGTTATAAA+TGG + tig0020262:109726-109745 Msa1379100:intergenic 30.0%
ACTAGAAGAACAAGTCTATA+TGG - tig0020262:109779-109798 Msa1379100:intron 30.0%
! ATTTTTGCAATTCATGGACA+AGG - tig0020262:109814-109833 Msa1379100:intron 30.0%
! AAATTTTTCATGCATTCCTC+AGG + tig0020262:109889-109908 Msa1379100:intergenic 30.0%
ACATAATATACGAGCATCAT+TGG - tig0020262:110241-110260 Msa1379100:intron 30.0%
! TTAGAGAGTGTATCTCTAAA+TGG - tig0020262:110765-110784 Msa1379100:intron 30.0%
ATCTATACTCTATGTTGAGT+GGG - tig0020262:111068-111087 Msa1379100:intron 30.0%
!!! AAACCATTTTGAAGTCAAGT+GGG - tig0020262:111407-111426 Msa1379100:intron 30.0%
TATGGAAAAAACTAGTGTGT+GGG - tig0020262:106821-106840 Msa1379100:intron 30.0%
TAAAAATGTCCCACATTGAA+CGG - tig0020262:106851-106870 Msa1379100:intron 30.0%
!!! AACGCGTTTTGTTTCTTAAT+TGG + tig0020262:107131-107150 Msa1379100:intergenic 30.0%
TAACAAAAAACGAGTGACTT+GGG + tig0020262:107180-107199 Msa1379100:intergenic 30.0%
TACAAACTCTCCCTATAAAA+AGG - tig0020262:107198-107217 Msa1379100:CDS 30.0%
! TTCGGTGTAAAGAATCAAAT+GGG + tig0020262:107233-107252 Msa1379100:intergenic 30.0%
! TTTCGGTGTAAAGAATCAAA+TGG + tig0020262:107234-107253 Msa1379100:intergenic 30.0%
ACTTCTCCAAAACATGAATA+TGG + tig0020262:107536-107555 Msa1379100:intergenic 30.0%
!!! ATGTTTTGGAGAAGTTAGAA+TGG - tig0020262:107541-107560 Msa1379100:intron 30.0%
CGAAACCGTTCAAATTAATA+TGG + tig0020262:107619-107638 Msa1379100:intergenic 30.0%
AGAATTACACCCTCAAAATA+TGG + tig0020262:107691-107710 Msa1379100:intergenic 30.0%
! GCATAAATTTTTGTAGTGGT+TGG - tig0020262:112605-112624 Msa1379100:intron 30.0%
! TCAAATGAAGTTTTCATTGC+TGG - tig0020262:112648-112667 Msa1379100:intron 30.0%
ATTGTTCAAGAAATTGCACA+AGG - tig0020262:112702-112721 Msa1379100:intron 30.0%
TTCAACATACAGTAAACCAA+TGG + tig0020262:112764-112783 Msa1379100:intergenic 30.0%
! TTTTCATTTCCTGCAAACAA+GGG + tig0020262:112808-112827 Msa1379100:intergenic 30.0%
! TTTTTCATTTCCTGCAAACA+AGG + tig0020262:112809-112828 Msa1379100:intergenic 30.0%
TTGTTTGCAGGAAATGAAAA+AGG - tig0020262:112808-112827 Msa1379100:intron 30.0%
TGTTTGCAGGAAATGAAAAA+GGG - tig0020262:112809-112828 Msa1379100:intron 30.0%
AATTTGCAGAACTAGTTGAA+AGG + tig0020262:112901-112920 Msa1379100:intergenic 30.0%
! TACATAGTTTTTCTCCTTTC+TGG + tig0020262:113124-113143 Msa1379100:intergenic 30.0%
AATTACGTCGTATAGTTCAT+CGG + tig0020262:113178-113197 Msa1379100:intergenic 30.0%
CAGTTAGTGCTACATATATA+CGG + tig0020262:113241-113260 Msa1379100:intergenic 30.0%
TAACTGATTAAACTTTGCAG+GGG + tig0020262:113483-113502 Msa1379100:intergenic 30.0%
!!! TTATGGTAATTTTGATGACG+TGG + tig0020262:113537-113556 Msa1379100:intergenic 30.0%
CGTCATCAAAATTACCATAA+TGG - tig0020262:113537-113556 Msa1379100:intron 30.0%
TCAAAATTACCATAATGGCA+TGG - tig0020262:113542-113561 Msa1379100:intron 30.0%
CAAAATTACCATAATGGCAT+GGG - tig0020262:113543-113562 Msa1379100:intron 30.0%
AAGAAAAAAAAATAGCCCAG+GGG + tig0020262:113583-113602 Msa1379100:intergenic 30.0%
GAAGAAAAAAAAATAGCCCA+GGG + tig0020262:113584-113603 Msa1379100:intergenic 30.0%
TGAAGAAAAAAAAATAGCCC+AGG + tig0020262:113585-113604 Msa1379100:intergenic 30.0%
CCTGTAGAAAAAGTAAAGAA+TGG + tig0020262:114018-114037 Msa1379100:intergenic 30.0%
!!! CCATTCTTTACTTTTTCTAC+AGG - tig0020262:114015-114034 Msa1379100:intron 30.0%
CACTGCATTGCATAAATATA+TGG + tig0020262:114195-114214 Msa1379100:intergenic 30.0%
GGAAATATGGATAACTCTAA+GGG + tig0020262:114278-114297 Msa1379100:intergenic 30.0%
AGGAAATATGGATAACTCTA+AGG + tig0020262:114279-114298 Msa1379100:intergenic 30.0%
AGTTATCCATATTTCCTCAT+GGG - tig0020262:114282-114301 Msa1379100:intron 30.0%
! ATATTTCCTCATGGGTTATT+GGG - tig0020262:114290-114309 Msa1379100:intron 30.0%
TTTGCGAACATTATCATCAT+TGG + tig0020262:114316-114335 Msa1379100:intergenic 30.0%
GCAGTTATAACATAAGAACT+TGG - tig0020262:114512-114531 Msa1379100:intron 30.0%
TTAGGGATATCTTTCTTATG+AGG + tig0020262:114592-114611 Msa1379100:intergenic 30.0%
CAAGATAATCATAGCTGTTA+GGG + tig0020262:114609-114628 Msa1379100:intergenic 30.0%
ACAAGATAATCATAGCTGTT+AGG + tig0020262:114610-114629 Msa1379100:intergenic 30.0%
CTTGTAAATCTCAGTAGAAA+AGG - tig0020262:114625-114644 Msa1379100:intron 30.0%
GAGTTAACGACTATAACTAT+CGG + tig0020262:114894-114913 Msa1379100:intergenic 30.0%
!!! GTTAATTTTTAAGGCAAACC+GGG + tig0020262:115080-115099 Msa1379100:intergenic 30.0%
GTGTCAAGAACAATATTGAG+TGG - tig0020262:104932-104951 Msa1379100:three_prime_UTR 35.0%
ACTCATAAAGAAAAAGAGGG+TGG - tig0020262:105051-105070 Msa1379100:intron 35.0%
! GTTTAGTTCAACTTATGGGA+AGG - tig0020262:105097-105116 Msa1379100:intron 35.0%
TCTATAGTGAAGTTTCTTCC+TGG - tig0020262:105179-105198 Msa1379100:intron 35.0%
TCTGGTCTAATGCTTGAAAT+TGG - tig0020262:105440-105459 Msa1379100:intron 35.0%
AGGTCCACTTGAGTTAAAAA+AGG - tig0020262:106369-106388 Msa1379100:intron 35.0%
TCCACTTGAGTTAAAAAAGG+AGG - tig0020262:106372-106391 Msa1379100:intron 35.0%
!!! TCCTCCTTTTTTAACTCAAG+TGG + tig0020262:106376-106395 Msa1379100:intergenic 35.0%
ACCAAGTTCATCAATTTCTC+AGG - tig0020262:106672-106691 Msa1379100:intron 35.0%
TCCTGAGAAATTGATGAACT+TGG + tig0020262:106676-106695 Msa1379100:intergenic 35.0%
AGTTCATCAATTTCTCAGGA+AGG - tig0020262:106676-106695 Msa1379100:intron 35.0%
CTATGGAAAAAACTAGTGTG+TGG - tig0020262:106820-106839 Msa1379100:intron 35.0%
GTTCACCCTTTCACAAAATT+GGG + tig0020262:106941-106960 Msa1379100:intergenic 35.0%
! TTCTGGATATGCTTTTGGAT+CGG + tig0020262:107094-107113 Msa1379100:intergenic 35.0%
!! GAAGTTTCTGGATATGCTTT+TGG + tig0020262:107099-107118 Msa1379100:intergenic 35.0%
AAAGCATATCCAGAAACTTC+CGG - tig0020262:107099-107118 Msa1379100:intron 35.0%
AAACAAAACGCGTTTGCTTA+AGG - tig0020262:107137-107156 Msa1379100:intron 35.0%
AACAAAAAACGAGTGACTTG+GGG + tig0020262:107179-107198 Msa1379100:intergenic 35.0%
GTAACAAAAAACGAGTGACT+TGG + tig0020262:107181-107200 Msa1379100:intergenic 35.0%
TCGGTGTAAAGAATCAAATG+GGG + tig0020262:107232-107251 Msa1379100:intergenic 35.0%
!!! AAGCATCGACTGTGAATTTT+CGG + tig0020262:107251-107270 Msa1379100:intergenic 35.0%
GAGAAGAGAGGAAAAAACAT+AGG + tig0020262:107274-107293 Msa1379100:intergenic 35.0%
CTTGTTAAAAACAAGTCGGA+GGG + tig0020262:107296-107315 Msa1379100:intergenic 35.0%
! ACTTGTTAAAAACAAGTCGG+AGG + tig0020262:107297-107316 Msa1379100:intergenic 35.0%
AGAACACTCTTAATACCGAA+GGG + tig0020262:107345-107364 Msa1379100:intergenic 35.0%
AAGAACACTCTTAATACCGA+AGG + tig0020262:107346-107365 Msa1379100:intergenic 35.0%
GACTATGAACTTAAGACCAA+GGG + tig0020262:107380-107399 Msa1379100:intergenic 35.0%
!! TTTTGGAGAAGTTAGAATGG+TGG - tig0020262:107544-107563 Msa1379100:intron 35.0%
! AACGATTGAGCCATATTTTG+AGG - tig0020262:107678-107697 Msa1379100:intron 35.0%
!! ACGATTGAGCCATATTTTGA+GGG - tig0020262:107679-107698 Msa1379100:intron 35.0%
TTAATCGAACAGTTGTAGCT+GGG - tig0020262:107737-107756 Msa1379100:intron 35.0%
ACTCAACCTAGTAACAACTT+CGG - tig0020262:107854-107873 Msa1379100:intron 35.0%
ACCGAAGAAGTTACATATTG+AGG - tig0020262:107962-107981 Msa1379100:intron 35.0%
!! ATCTTTTTCACAAGAGTGCA+TGG + tig0020262:108515-108534 Msa1379100:intergenic 35.0%
CCCGATGAATACATATTCAT+AGG + tig0020262:109059-109078 Msa1379100:intergenic 35.0%
CCCCTTTAACTAAAGAATAG+TGG - tig0020262:109172-109191 Msa1379100:intron 35.0%
CCCCACTATTCTTTAGTTAA+AGG + tig0020262:109177-109196 Msa1379100:intergenic 35.0%
CAAGATGTTATAGAACCTCA+AGG - tig0020262:109331-109350 Msa1379100:intron 35.0%
CCATAATTCAGCATCCATTA+AGG + tig0020262:109441-109460 Msa1379100:intergenic 35.0%
! CCTTAATGGATGCTGAATTA+TGG - tig0020262:109438-109457 Msa1379100:intron 35.0%
CTCATAGTTGCAAAACCAAT+CGG - tig0020262:109528-109547 Msa1379100:intron 35.0%
CAAAACCAATCGGTTGTATT+TGG - tig0020262:109538-109557 Msa1379100:intron 35.0%
! GGAACTAAAACTTGATGGTA+TGG - tig0020262:109576-109595 Msa1379100:intron 35.0%
!! TGGTATGGTTGATGAATACA+AGG - tig0020262:109591-109610 Msa1379100:intron 35.0%
! GTCTAAAACCTTTGACTACA+AGG + tig0020262:109621-109640 Msa1379100:intergenic 35.0%
! TAAAGGGACTAGTACTCTTA+TGG + tig0020262:109699-109718 Msa1379100:intergenic 35.0%
AGTTATAAATGGCGGCTAAA+GGG + tig0020262:109715-109734 Msa1379100:intergenic 35.0%
TAACTCGATAGTACTCCAAA+TGG - tig0020262:109730-109749 Msa1379100:intron 35.0%
AGACAACTTTCACATCCATT+TGG + tig0020262:109748-109767 Msa1379100:intergenic 35.0%
AATTCATGGACAAGGAAACA+AGG - tig0020262:109822-109841 Msa1379100:intron 35.0%
! TGGTCTAAAATAAACTCCTG+AGG - tig0020262:109870-109889 Msa1379100:intron 35.0%
ATCTCAAGTGTTCTTACACT+TGG + tig0020262:110215-110234 Msa1379100:intergenic 35.0%
AAGTGTAAGAACACTTGAGA+TGG - tig0020262:110214-110233 Msa1379100:intron 35.0%
TGTGCAAGTTTACTAGTAGA+CGG - tig0020262:110324-110343 Msa1379100:intron 35.0%
AAGTTTACTAGTAGACGGAT+GGG - tig0020262:110329-110348 Msa1379100:intron 35.0%
TCATGACTCTTTCTATAGCA+TGG + tig0020262:110363-110382 Msa1379100:intergenic 35.0%
ATGCTATAGAAAGAGTCATG+AGG - tig0020262:110362-110381 Msa1379100:intron 35.0%
!! GACTCTAAGATTACTTCACT+AGG - tig0020262:110402-110421 Msa1379100:intron 35.0%
ATCTCAGATTCATTCCATAG+TGG + tig0020262:110560-110579 Msa1379100:intergenic 35.0%
AAACTAGTGAAGAAGCAAGT+TGG - tig0020262:110594-110613 Msa1379100:intron 35.0%
TGAATTAACACAGCTGGTAA+CGG + tig0020262:110659-110678 Msa1379100:intergenic 35.0%
TCACAATGAATTAACACAGC+TGG + tig0020262:110665-110684 Msa1379100:intergenic 35.0%
AATTCATTGTGATAGTACCG+CGG - tig0020262:110673-110692 Msa1379100:intron 35.0%
CTATTAAGTCCTTTCGTCAA+AGG + tig0020262:110837-110856 Msa1379100:intergenic 35.0%
ATCCCAAGAAATAGGTTCAA+TGG - tig0020262:110941-110960 Msa1379100:intron 35.0%
TCCCAAGAAATAGGTTCAAT+GGG - tig0020262:110942-110961 Msa1379100:intron 35.0%
! ACCCATTGAACCTATTTCTT+GGG + tig0020262:110946-110965 Msa1379100:intergenic 35.0%
! TACCCATTGAACCTATTTCT+TGG + tig0020262:110947-110966 Msa1379100:intergenic 35.0%
GGTAAAAACAAGTCATGAAG+TGG - tig0020262:110963-110982 Msa1379100:intron 35.0%
GATCTATACTCTATGTTGAG+TGG - tig0020262:111067-111086 Msa1379100:intron 35.0%
TCTATACTCTATGTTGAGTG+GGG - tig0020262:111069-111088 Msa1379100:intron 35.0%
!! TATGCAAAGGTTCAAGTTGT+TGG - tig0020262:111331-111350 Msa1379100:intron 35.0%
!!! GAAACCATTTTGAAGTCAAG+TGG - tig0020262:111406-111425 Msa1379100:intron 35.0%
!!! AACCATTTTGAAGTCAAGTG+GGG - tig0020262:111408-111427 Msa1379100:intron 35.0%
CTATGGAAAAAACTAGTGTG+TGG - tig0020262:106820-106839 Msa1379100:intron 35.0%
GTTCACCCTTTCACAAAATT+GGG + tig0020262:106941-106960 Msa1379100:intergenic 35.0%
! TTCTGGATATGCTTTTGGAT+CGG + tig0020262:107094-107113 Msa1379100:intergenic 35.0%
!! GAAGTTTCTGGATATGCTTT+TGG + tig0020262:107099-107118 Msa1379100:intergenic 35.0%
AAAGCATATCCAGAAACTTC+CGG - tig0020262:107099-107118 Msa1379100:intron 35.0%
AAACAAAACGCGTTTGCTTA+AGG - tig0020262:107137-107156 Msa1379100:intron 35.0%
AACAAAAAACGAGTGACTTG+GGG + tig0020262:107179-107198 Msa1379100:intergenic 35.0%
GTAACAAAAAACGAGTGACT+TGG + tig0020262:107181-107200 Msa1379100:intergenic 35.0%
TCGGTGTAAAGAATCAAATG+GGG + tig0020262:107232-107251 Msa1379100:intergenic 35.0%
!!! AAGCATCGACTGTGAATTTT+CGG + tig0020262:107251-107270 Msa1379100:intergenic 35.0%
CTTGTTAAAAACAAGTCGGA+GGG + tig0020262:107296-107315 Msa1379100:intergenic 35.0%
! ACTTGTTAAAAACAAGTCGG+AGG + tig0020262:107297-107316 Msa1379100:intergenic 35.0%
AGAACACTCTTAATACCGAA+GGG + tig0020262:107345-107364 Msa1379100:intergenic 35.0%
AAGAACACTCTTAATACCGA+AGG + tig0020262:107346-107365 Msa1379100:intergenic 35.0%
GACTATGAACTTAAGACCAA+GGG + tig0020262:107380-107399 Msa1379100:intergenic 35.0%
! GTAGTGCCATATTCATGTTT+TGG - tig0020262:112180-112199 Msa1379100:intron 35.0%
!! TTTTGGAGAAGTTAGAATGG+TGG - tig0020262:107544-107563 Msa1379100:intron 35.0%
GTCTCAACACCATAATAGAA+TGG - tig0020262:112238-112257 Msa1379100:intron 35.0%
! AACGATTGAGCCATATTTTG+AGG - tig0020262:107678-107697 Msa1379100:intron 35.0%
!! ACGATTGAGCCATATTTTGA+GGG - tig0020262:107679-107698 Msa1379100:intron 35.0%
TTAATCGAACAGTTGTAGCT+GGG - tig0020262:107737-107756 Msa1379100:intron 35.0%
ACTCAACCTAGTAACAACTT+CGG - tig0020262:107854-107873 Msa1379100:intron 35.0%
CTTCGGTAGATGATAGAATT+TGG - tig0020262:112524-112543 Msa1379100:intron 35.0%
GCAATTTCTTGAACAATGAC+AGG + tig0020262:112699-112718 Msa1379100:intergenic 35.0%
GTTTGCAGGAAATGAAAAAG+GGG - tig0020262:112810-112829 Msa1379100:intron 35.0%
!! GATACTTTAAGATGTTGACC+TGG + tig0020262:112855-112874 Msa1379100:intergenic 35.0%
AAGTATCACTCTCTCATGTT+AGG - tig0020262:112868-112887 Msa1379100:intron 35.0%
GTCGATGCTTTATAGTCTAT+AGG + tig0020262:112980-112999 Msa1379100:intergenic 35.0%
TTTCTTCAGGGATACTTGTT+GGG - tig0020262:113084-113103 Msa1379100:intron 35.0%
! TATGTAATCCCTTTTGCTCA+TGG - tig0020262:113138-113157 Msa1379100:intron 35.0%
AGATATCAGTTCATTCGATG+AGG - tig0020262:113344-113363 Msa1379100:intron 35.0%
TGTTATTCGTCCCTACAAAT+AGG - tig0020262:113411-113430 Msa1379100:intron 35.0%
GTTATTCGTCCCTACAAATA+GGG - tig0020262:113412-113431 Msa1379100:intron 35.0%
TTATTCGTCCCTACAAATAG+GGG - tig0020262:113413-113432 Msa1379100:intron 35.0%
TTAAACGACCCCTATTTGTA+GGG + tig0020262:113424-113443 Msa1379100:intergenic 35.0%
TTTAAACGACCCCTATTTGT+AGG + tig0020262:113425-113444 Msa1379100:intergenic 35.0%
! AAAAAGGATTAGCGATTGCA+GGG + tig0020262:113889-113908 Msa1379100:intergenic 35.0%
! TAAAAAGGATTAGCGATTGC+AGG + tig0020262:113456-113475 Msa1379100:intergenic 35.0%
CTTTGTAGGGGCAAAAAAAA+AGG - tig0020262:113873-113892 Msa1379100:intron 35.0%
! AAAAAAGGATTAGCGATTGC+AGG - tig0020262:113888-113907 Msa1379100:intron 35.0%
! AAAAAGGATTAGCGATTGCA+GGG - tig0020262:113889-113908 Msa1379100:intron 35.0%
ATTTGTGTTGAGGAAATTGG+TGG + tig0020262:114131-114150 Msa1379100:intergenic 35.0%
GAGATTTGTGTTGAGGAAAT+TGG + tig0020262:114134-114153 Msa1379100:intergenic 35.0%
! GCAATTTGAGATTTGTGTTG+AGG + tig0020262:114141-114160 Msa1379100:intergenic 35.0%
ATTACTCGACAGCTTAAAAG+TGG + tig0020262:114163-114182 Msa1379100:intergenic 35.0%
! AATATGGATAACTCTAAGGG+TGG + tig0020262:114275-114294 Msa1379100:intergenic 35.0%
GAGTTATCCATATTTCCTCA+TGG - tig0020262:114281-114300 Msa1379100:intron 35.0%
CAATAACCCATGAGGAAATA+TGG + tig0020262:114291-114310 Msa1379100:intergenic 35.0%
! CATATTTCCTCATGGGTTAT+TGG - tig0020262:114289-114308 Msa1379100:intron 35.0%
GCATTCGTTCACTAATTTAC+AGG - tig0020262:114647-114666 Msa1379100:intron 35.0%
! CTAACTCCATCATTGATGAT+TGG - tig0020262:114823-114842 Msa1379100:intron 35.0%
!!! ATTTTGATTACCCTGCAACT+TGG + tig0020262:114869-114888 Msa1379100:intergenic 35.0%
AGTAGCAAATGTCATCTGAT+TGG + tig0020262:115011-115030 Msa1379100:intergenic 35.0%
CAATAAGCACTCTTTGATTG+TGG - tig0020262:115099-115118 Msa1379100:intron 35.0%
! TTGTGGTTCATTCTCTAAGA+TGG - tig0020262:115116-115135 Msa1379100:intron 35.0%
!! GATTGATCAAATTTTCAGGG+TGG - tig0020262:115334-115353 Msa1379100:five_prime_UTR 35.0%
TGTCAAAACATTCTTTAGGC+CGG + tig0020262:115381-115400 Msa1379100:intergenic 35.0%
!! GTTTTGACATGTTTAGTAGG+TGG - tig0020262:115392-115411 Msa1379100:five_prime_UTR 35.0%
!! TGCTTTCAAGTTGCAACATG+TGG - tig0020262:105155-105174 Msa1379100:intron 40.0%
AAGTTTCTTCCTGGATTCCA+AGG - tig0020262:105188-105207 Msa1379100:intron 40.0%
GTTTCAAGCACAAAAGGAAG+GGG + tig0020262:105215-105234 Msa1379100:intergenic 40.0%
GGTTTCAAGCACAAAAGGAA+GGG + tig0020262:105216-105235 Msa1379100:intergenic 40.0%
TGGTTTCAAGCACAAAAGGA+AGG + tig0020262:105217-105236 Msa1379100:intergenic 40.0%
! TTCCTTTTGTGCTTGAAACC+AGG - tig0020262:105216-105235 Msa1379100:intron 40.0%
AACCTGGTTTCAAGCACAAA+AGG + tig0020262:105221-105240 Msa1379100:intergenic 40.0%
! CTTGAAACCAGGTTAGTTCA+TGG - tig0020262:105227-105246 Msa1379100:intron 40.0%
TGTAAAGCCATGAACTAACC+TGG + tig0020262:105237-105256 Msa1379100:intergenic 40.0%
TTGTTAAGGTATGTGGGAGT+TGG - tig0020262:105308-105327 Msa1379100:intron 40.0%
AGTATGAGAGGATCATCCTT+TGG + tig0020262:105386-105405 Msa1379100:intergenic 40.0%
AGGATGATCCTCTCATACTA+TGG - tig0020262:105387-105406 Msa1379100:intron 40.0%
GTACAAGCTCTCAATGTTAC+TGG - tig0020262:105915-105934 Msa1379100:intron 40.0%
CTCTGTTGCTGAAGATTACT+GGG + tig0020262:105990-106009 Msa1379100:intergenic 40.0%
GTCTACCTAATCTGATCTTG+AGG - tig0020262:106407-106426 Msa1379100:intron 40.0%
TGTTGCCTCAAGATCAGATT+AGG + tig0020262:106415-106434 Msa1379100:intergenic 40.0%
TGATCTTGAGGCAACATTCA+TGG - tig0020262:106419-106438 Msa1379100:intron 40.0%
CAACATTCATGGACAAAGGT+GGG - tig0020262:106430-106449 Msa1379100:intron 40.0%
AACATTCATGGACAAAGGTG+GGG - tig0020262:106431-106450 Msa1379100:intron 40.0%
ATAATACTACTCACCTGCCA+AGG + tig0020262:106569-106588 Msa1379100:intergenic 40.0%
! GGGTACCCAATTTTGTGAAA+GGG - tig0020262:106933-106952 Msa1379100:intron 40.0%
CGTTCACCCTTTCACAAAAT+TGG + tig0020262:106942-106961 Msa1379100:intergenic 40.0%
! TCTGGATATGCTTTTGGATC+GGG + tig0020262:107093-107112 Msa1379100:intergenic 40.0%
TGGATATATCCGGAAGTTTC+TGG + tig0020262:107111-107130 Msa1379100:intergenic 40.0%
TTAATACCGAAGGGACAGAA+AGG + tig0020262:107336-107355 Msa1379100:intergenic 40.0%
TTCTTAAGACCATAGTCCCT+TGG - tig0020262:107361-107380 Msa1379100:intron 40.0%
AACTTAAGACCAAGGGACTA+TGG + tig0020262:107373-107392 Msa1379100:intergenic 40.0%
GGACTATGAACTTAAGACCA+AGG + tig0020262:107381-107400 Msa1379100:intergenic 40.0%
GTGGTATCACCATATTTGAG+TGG - tig0020262:107502-107521 Msa1379100:intron 40.0%
GCACTATGACCACTCAAATA+TGG + tig0020262:107514-107533 Msa1379100:intergenic 40.0%
GTGGTAACACCATATTTGAG+TGG - tig0020262:107563-107582 Msa1379100:intron 40.0%
GTCTCAGCACCATAATAGAA+TGG - tig0020262:107585-107604 Msa1379100:intron 40.0%
TTGAACGGTTTCGAATAGAG+CGG - tig0020262:107626-107645 Msa1379100:intron 40.0%
GTTAATCGAACAGTTGTAGC+TGG - tig0020262:107736-107755 Msa1379100:intron 40.0%
TAGTCTACCTTGCACAACTT+TGG - tig0020262:107790-107809 Msa1379100:intron 40.0%
AGTCTACCTTGCACAACTTT+GGG - tig0020262:107791-107810 Msa1379100:intron 40.0%
CATCTACCGAAGTTGTTACT+AGG + tig0020262:107863-107882 Msa1379100:intergenic 40.0%
GTAACAACTTCGGTAGATGA+TGG - tig0020262:107864-107883 Msa1379100:intron 40.0%
!! CTTCGGTAGATGATGGAATT+TGG - tig0020262:107871-107890 Msa1379100:intron 40.0%
TAGTGAGTTCAACTCTCTTG+GGG + tig0020262:109030-109049 Msa1379100:intergenic 40.0%
CTAGTGAGTTCAACTCTCTT+GGG + tig0020262:109031-109050 Msa1379100:intergenic 40.0%
ACTAGTGAGTTCAACTCTCT+TGG + tig0020262:109032-109051 Msa1379100:intergenic 40.0%
GATGTTATAGAACCTCAAGG+AGG - tig0020262:109334-109353 Msa1379100:intron 40.0%
! TTAGCTTTCTTACCTCCTTG+AGG + tig0020262:109349-109368 Msa1379100:intergenic 40.0%
ATGGATGCTGAATTATGGCA+AGG - tig0020262:109443-109462 Msa1379100:intron 40.0%
AAGGCTTTCCTTGTAGTCAA+AGG - tig0020262:109610-109629 Msa1379100:intron 40.0%
GAGTTATAAATGGCGGCTAA+AGG + tig0020262:109716-109735 Msa1379100:intergenic 40.0%
GTCGGATCTAATACATTCTG+TGG + tig0020262:110282-110301 Msa1379100:intergenic 40.0%
TTTCACGACATCGACAATGT+CGG + tig0020262:110300-110319 Msa1379100:intergenic 40.0%
CAAGTTTACTAGTAGACGGA+TGG - tig0020262:110328-110347 Msa1379100:intron 40.0%
!! GATATTGACTCAGTCCACTA+TGG - tig0020262:110543-110562 Msa1379100:intron 40.0%
AAAAGGGATTTCAGCTAGCA+AGG + tig0020262:110627-110646 Msa1379100:intergenic 40.0%
! TGCTAGCTGAAATCCCTTTT+TGG - tig0020262:110627-110646 Msa1379100:intron 40.0%
! GCTAGCTGAAATCCCTTTTT+GGG - tig0020262:110628-110647 Msa1379100:intron 40.0%
GTAACGGTTTCTCCCAAAAA+GGG + tig0020262:110643-110662 Msa1379100:intergenic 40.0%
CTTAATCTTTGCAATAGCCG+CGG + tig0020262:110693-110712 Msa1379100:intergenic 40.0%
ATGGTAAGAGACGACAGATA+AGG - tig0020262:110726-110745 Msa1379100:intron 40.0%
GAGTGTATCTCTAAATGGAG+CGG - tig0020262:110770-110789 Msa1379100:intron 40.0%
TTAGCTGATCCTTTGACGAA+AGG - tig0020262:110825-110844 Msa1379100:intron 40.0%
AAGTCCAAGAAACATCCAGT+AGG - tig0020262:110862-110881 Msa1379100:intron 40.0%
CAAGAAACATCCAGTAGGAT+GGG - tig0020262:110867-110886 Msa1379100:intron 40.0%
CGTATAGGTGAGTCTATCAA+GGG + tig0020262:111113-111132 Msa1379100:intergenic 40.0%
TCGTATAGGTGAGTCTATCA+AGG + tig0020262:111114-111133 Msa1379100:intergenic 40.0%
TAGACTCACCTATACGAATG+TGG - tig0020262:111117-111136 Msa1379100:intron 40.0%
CCTAAGTTCCACATTCGTAT+AGG + tig0020262:111128-111147 Msa1379100:intergenic 40.0%
CCTATACGAATGTGGAACTT+AGG - tig0020262:111125-111144 Msa1379100:intron 40.0%
ATTCTGCCTCGAAATTCCAT+AGG + tig0020262:111156-111175 Msa1379100:intergenic 40.0%
! CCTAGAGCATTCGTTAAAAC+CGG - tig0020262:111177-111196 Msa1379100:intron 40.0%
! CTAGAGCATTCGTTAAAACC+GGG - tig0020262:111178-111197 Msa1379100:intron 40.0%
! CCACACACAAACCTTTTCAT+AGG + tig0020262:111247-111266 Msa1379100:intergenic 40.0%
CCTATGAAAAGGTTTGTGTG+TGG - tig0020262:111244-111263 Msa1379100:intron 40.0%
GAATACCTTCCACTATGCAA+AGG - tig0020262:111318-111337 Msa1379100:intron 40.0%
! TTGAACCTTTGCATAGTGGA+AGG + tig0020262:111326-111345 Msa1379100:intergenic 40.0%
CAACTTGAACCTTTGCATAG+TGG + tig0020262:111330-111349 Msa1379100:intergenic 40.0%
!!! ACCATTTTGAAGTCAAGTGG+GGG - tig0020262:111409-111428 Msa1379100:intron 40.0%
! GGGTACCCAATTTTGTGAAA+GGG - tig0020262:106933-106952 Msa1379100:intron 40.0%
CGTTCACCCTTTCACAAAAT+TGG + tig0020262:106942-106961 Msa1379100:intergenic 40.0%
! TCTGGATATGCTTTTGGATC+GGG + tig0020262:107093-107112 Msa1379100:intergenic 40.0%
TGGATATATCCGGAAGTTTC+TGG + tig0020262:107111-107130 Msa1379100:intergenic 40.0%
GAGAAGAGAGGAAAAAACAC+AGG + tig0020262:111931-111950 Msa1379100:intergenic 40.0%
TTAATACCGAAGGGACAGAA+AGG + tig0020262:107336-107355 Msa1379100:intergenic 40.0%
TTCTTAAGACCATAGTCCCT+TGG - tig0020262:107361-107380 Msa1379100:intron 40.0%
AACTTAAGACCAAGGGACTA+TGG + tig0020262:107373-107392 Msa1379100:intergenic 40.0%
GGACTATGAACTTAAGACCA+AGG + tig0020262:107381-107400 Msa1379100:intergenic 40.0%
GTGGTATCACCATATTTGAG+TGG - tig0020262:107502-107521 Msa1379100:intron 40.0%
GTGGTAACACCATATTTGAG+TGG - tig0020262:107563-107582 Msa1379100:intron 40.0%
GTGTTGAGACCACTCAAATA+TGG + tig0020262:112228-112247 Msa1379100:intergenic 40.0%
TTGAACGGTTTCGAATAGAG+CGG - tig0020262:107626-107645 Msa1379100:intron 40.0%
GTTAATCGAACAGTTGTAGC+TGG - tig0020262:107736-107755 Msa1379100:intron 40.0%
TAGTCTACCTTGCACAACTT+TGG - tig0020262:107790-107809 Msa1379100:intron 40.0%
AGTCTACCTTGCACAACTTT+GGG - tig0020262:107791-107810 Msa1379100:intron 40.0%
CATCTACCGAAGTTGTTACT+AGG + tig0020262:107863-107882 Msa1379100:intergenic 40.0%
TCTTGAACAATGACAGGAAC+AGG + tig0020262:112693-112712 Msa1379100:intergenic 40.0%
! TCACAAATTCCCTTGTTTGC+AGG - tig0020262:112796-112815 Msa1379100:intron 40.0%
TTGACCTGGAGATTTATCCA+TGG + tig0020262:112841-112860 Msa1379100:intergenic 40.0%
CTTTCTTCAGGGATACTTGT+TGG - tig0020262:113083-113102 Msa1379100:intron 40.0%
! TTCTTCAGGGATACTTGTTG+GGG - tig0020262:113085-113104 Msa1379100:intron 40.0%
! AATCCCTTTTGCTCATGGAA+TGG - tig0020262:113143-113162 Msa1379100:intron 40.0%
! ATCCCTTTTGCTCATGGAAT+GGG - tig0020262:113144-113163 Msa1379100:intron 40.0%
CTTTGCAGGGGCAAATAAAA+AGG + tig0020262:113471-113490 Msa1379100:intergenic 40.0%
GAATTGACGAAAATACCCCT+GGG - tig0020262:113565-113584 Msa1379100:intron 40.0%
! GCAGTCATTAACTTGGTCAA+GGG - tig0020262:113829-113848 Msa1379100:intron 40.0%
TTATTCGTCCCTGCAAATAG+GGG + tig0020262:113931-113950 Msa1379100:intergenic 40.0%
GTTATTCGTCCCTGCAAATA+GGG + tig0020262:113932-113951 Msa1379100:intergenic 40.0%
TGTTATTCGTCCCTGCAAAT+AGG + tig0020262:113933-113952 Msa1379100:intergenic 40.0%
! CTTTTTCTACAGGTCACATC+AGG - tig0020262:114025-114044 Msa1379100:intron 40.0%
AGTGGCTTGAAAATTCTCCA+AGG - tig0020262:114083-114102 Msa1379100:intron 40.0%
! CAAAGCGCTACATATTCAGA+AGG - tig0020262:114332-114351 Msa1379100:intron 40.0%
CATGCTTGTGTTGCCAAAAA+TGG + tig0020262:114788-114807 Msa1379100:intergenic 40.0%
!!! CATTTTTGGCAACACAAGCA+TGG - tig0020262:114786-114805 Msa1379100:intron 40.0%
CTGTCTCCAATCATCAATGA+TGG + tig0020262:114832-114851 Msa1379100:intergenic 40.0%
! TCATTGATGATTGGAGACAG+TGG - tig0020262:114832-114851 Msa1379100:intron 40.0%
TGTGCAAGTGTAGATACACA+AGG - tig0020262:114978-114997 Msa1379100:CDS 40.0%
! GATGACATTTGCTACTGTGA+AGG - tig0020262:115015-115034 Msa1379100:CDS 40.0%
!!! ATTTTTAAGGCAAACCGGGT+GGG + tig0020262:115076-115095 Msa1379100:intergenic 40.0%
!!! AATTTTTAAGGCAAACCGGG+TGG + tig0020262:115077-115096 Msa1379100:intergenic 40.0%
!! TGATCAAATTTTCAGGGTGG+AGG - tig0020262:115337-115356 Msa1379100:five_prime_UTR 40.0%
CCAGTTAGCCATAGTATGAG+AGG + tig0020262:105398-105417 Msa1379100:intergenic 45.0%
CCTCTCATACTATGGCTAAC+TGG - tig0020262:105395-105414 Msa1379100:intron 45.0%
CTCATACTATGGCTAACTGG+TGG - tig0020262:105398-105417 Msa1379100:intron 45.0%
GCTCTGTTGCTGAAGATTAC+TGG + tig0020262:105991-106010 Msa1379100:intergenic 45.0%
TCTTCAGCAACAGAGCTACA+AGG - tig0020262:105995-106014 Msa1379100:intron 45.0%
GAGGCAACATTCATGGACAA+AGG - tig0020262:106426-106445 Msa1379100:intron 45.0%
GCAACATTCATGGACAAAGG+TGG - tig0020262:106429-106448 Msa1379100:intron 45.0%
ACATTCATGGACAAAGGTGG+GGG - tig0020262:106432-106451 Msa1379100:intron 45.0%
TAAGTGAAGCCTGTGGAAAC+CGG + tig0020262:106605-106624 Msa1379100:intergenic 45.0%
ACTTATGCCACAGCAGAATC+CGG - tig0020262:106620-106639 Msa1379100:intron 45.0%
TGAATCGCTTCGTTTAGCAC+CGG + tig0020262:106642-106661 Msa1379100:intergenic 45.0%
TATGGGAAAAGTGACCTCCA+AGG - tig0020262:106899-106918 Msa1379100:intron 45.0%
ATGGGAAAAGTGACCTCCAA+GGG - tig0020262:106900-106919 Msa1379100:intron 45.0%
CACAAAATTGGGTACCCCAA+GGG + tig0020262:106930-106949 Msa1379100:intergenic 45.0%
TCACAAAATTGGGTACCCCA+AGG + tig0020262:106931-106950 Msa1379100:intergenic 45.0%
!! GGGGTACCCAATTTTGTGAA+AGG - tig0020262:106932-106951 Msa1379100:intron 45.0%
TTTGTTACGCGTAGCGCTTA+CGG + tig0020262:107051-107070 Msa1379100:intergenic 45.0%
! ATATGCTTTTGGATCGGGTC+GGG + tig0020262:107088-107107 Msa1379100:intergenic 45.0%
! GATATGCTTTTGGATCGGGT+CGG + tig0020262:107089-107108 Msa1379100:intergenic 45.0%
! GGCGAGCTCTCCTTTTTATA+GGG + tig0020262:107211-107230 Msa1379100:intergenic 45.0%
TCTACTCCTTTCTGTCCCTT+CGG - tig0020262:107327-107346 Msa1379100:intron 45.0%
GTGCTGAGACCACTCAAATA+TGG + tig0020262:107575-107594 Msa1379100:intergenic 45.0%
TTGATCGAAGCCACTCGATA+CGG + tig0020262:107659-107678 Msa1379100:intergenic 45.0%
!!! TAGCTGGGCTTGTTTTATCC+TGG - tig0020262:107752-107771 Msa1379100:intron 45.0%
!! GCTCTCTTTAAGACGTTTCG+TGG + tig0020262:107822-107841 Msa1379100:intergenic 45.0%
! TAATGGGAGCACGACATTAG+TGG - tig0020262:109213-109232 Msa1379100:intron 45.0%
! AATGGGAGCACGACATTAGT+GGG - tig0020262:109214-109233 Msa1379100:intron 45.0%
TGCACATTGAGCATCACTAG+AGG - tig0020262:110500-110519 Msa1379100:intron 45.0%
! GGTAACGGTTTCTCCCAAAA+AGG + tig0020262:110644-110663 Msa1379100:intergenic 45.0%
CCATCCTACTGGATGTTTCT+TGG + tig0020262:110869-110888 Msa1379100:intergenic 45.0%
CCAAGAAACATCCAGTAGGA+TGG - tig0020262:110866-110885 Msa1379100:intron 45.0%
! TACCATCACTTGTGGGCTAT+AGG + tig0020262:110900-110919 Msa1379100:intergenic 45.0%
GACTGGAGATCCCAAGAAAT+AGG - tig0020262:110933-110952 Msa1379100:intron 45.0%
GCCTCGAAATTCCATAGGAT+CGG + tig0020262:111151-111170 Msa1379100:intergenic 45.0%
!! CCGGTTTTAACGAATGCTCT+AGG + tig0020262:111180-111199 Msa1379100:intergenic 45.0%
! CTAAAAGCCCGTGCGTTTTA+AGG + tig0020262:111218-111237 Msa1379100:intergenic 45.0%
TCCCCCACTTGACTTCAAAA+TGG + tig0020262:111413-111432 Msa1379100:intergenic 45.0%
TATGGGAAAAGTGACCTCCA+AGG - tig0020262:106899-106918 Msa1379100:intron 45.0%
ATGGGAAAAGTGACCTCCAA+GGG - tig0020262:106900-106919 Msa1379100:intron 45.0%
CACAAAATTGGGTACCCCAA+GGG + tig0020262:106930-106949 Msa1379100:intergenic 45.0%
TCACAAAATTGGGTACCCCA+AGG + tig0020262:106931-106950 Msa1379100:intergenic 45.0%
!! GGGGTACCCAATTTTGTGAA+AGG - tig0020262:106932-106951 Msa1379100:intron 45.0%
TTTGTTACGCGTAGCGCTTA+CGG + tig0020262:107051-107070 Msa1379100:intergenic 45.0%
! ATATGCTTTTGGATCGGGTC+GGG + tig0020262:107088-107107 Msa1379100:intergenic 45.0%
! GATATGCTTTTGGATCGGGT+CGG + tig0020262:107089-107108 Msa1379100:intergenic 45.0%
! GGCGAGCTCTCCTTTTTATA+GGG + tig0020262:107211-107230 Msa1379100:intergenic 45.0%
TCTACTCCTTTCTGTCCCTT+CGG - tig0020262:107327-107346 Msa1379100:intron 45.0%
GCACTACGACCACTCAAATA+TGG + tig0020262:112167-112186 Msa1379100:intergenic 45.0%
TTGATCGAAGCCACTCGATA+CGG + tig0020262:107659-107678 Msa1379100:intergenic 45.0%
!!! TAGCTGGGCTTGTTTTATCC+TGG - tig0020262:107752-107771 Msa1379100:intron 45.0%
!! GCTCTCTTTAAGACGTTTCG+TGG + tig0020262:107822-107841 Msa1379100:intergenic 45.0%
ATTGCTGGTGACTCATACTC+TGG - tig0020262:112663-112682 Msa1379100:intron 45.0%
ATGAAAAAGGGGTCCAACCA+TGG - tig0020262:112821-112840 Msa1379100:intron 45.0%
CCTGGAGATTTATCCATGGT+TGG + tig0020262:112837-112856 Msa1379100:intergenic 45.0%
CCAACCATGGATAAATCTCC+AGG - tig0020262:112834-112853 Msa1379100:intron 45.0%
GAATGCTGCAACAACCAGAA+AGG - tig0020262:113107-113126 Msa1379100:intron 45.0%
GTCCCATTCCATGAGCAAAA+GGG + tig0020262:113149-113168 Msa1379100:intergenic 45.0%
AGTCCCATTCCATGAGCAAA+AGG + tig0020262:113150-113169 Msa1379100:intergenic 45.0%
GCAGTCATTAACTGGGTCAA+GGG + tig0020262:113515-113534 Msa1379100:intergenic 45.0%
TGACGTGGCAGTCATTAACT+GGG + tig0020262:113522-113541 Msa1379100:intergenic 45.0%
ATGACGTGGCAGTCATTAAC+TGG + tig0020262:113523-113542 Msa1379100:intergenic 45.0%
CGTCAATTCCCATGCCATTA+TGG + tig0020262:113554-113573 Msa1379100:intergenic 45.0%
GGAATTGACGAAAATACCCC+TGG - tig0020262:113564-113583 Msa1379100:intron 45.0%
TGACGTCGCAGTCATTAACT+TGG - tig0020262:113822-113841 Msa1379100:intron 45.0%
! CGCAGTCATTAACTTGGTCA+AGG - tig0020262:113828-113847 Msa1379100:intron 45.0%
TTTAAGCGACCCCTATTTGC+AGG - tig0020262:113919-113938 Msa1379100:intron 45.0%
TTAAGCGACCCCTATTTGCA+GGG - tig0020262:113920-113939 Msa1379100:intron 45.0%
!! TTTTCAAGCCACTCGCAACT+CGG + tig0020262:114076-114095 Msa1379100:intergenic 45.0%
! GGATAACTCTAAGGGTGGAA+AGG + tig0020262:114270-114289 Msa1379100:intergenic 45.0%
CACATTCGTGCGAGATTACA+AGG - tig0020262:114473-114492 Msa1379100:intron 45.0%
AACTTGGTTGCATGTGTTGC+AGG - tig0020262:114528-114547 Msa1379100:intron 45.0%
ACTTGGTTGCATGTGTTGCA+GGG - tig0020262:114529-114548 Msa1379100:intron 45.0%
!!! TATTATAATTTTTATATGAT+AGG + tig0020262:105663-105682 Msa1379100:intergenic 5.0%
!! ATAAAATAAATGTTAATTTA+TGG - tig0020262:105858-105877 Msa1379100:intron 5.0%
!! TAAAATAAATGTTAATTTAT+GGG - tig0020262:105859-105878 Msa1379100:intron 5.0%
!!! ATGTTTATTTTATTTTATTT+TGG - tig0020262:113380-113399 Msa1379100:intron 5.0%
!! TATATATATATATATATATG+GGG - tig0020262:115498-115517 Msa1379100:five_prime_UTR 5.0%
!! TGTGGGAGTTGGTGAGAAAG+AGG - tig0020262:105319-105338 Msa1379100:intron 50.0%
!! GTAGATTTGCCGGTTTCCAC+AGG - tig0020262:106593-106612 Msa1379100:intron 50.0%
TGTGGCATAAGTGAAGCCTG+TGG + tig0020262:106612-106631 Msa1379100:intergenic 50.0%
! TTTAGCACCGGATTCTGCTG+TGG + tig0020262:106630-106649 Msa1379100:intergenic 50.0%
TTGGGGTGACCGTTCAATGT+GGG + tig0020262:106863-106882 Msa1379100:intergenic 50.0%
ATTGGGGTGACCGTTCAATG+TGG + tig0020262:106864-106883 Msa1379100:intergenic 50.0%
! GGGCGAGCTCTCCTTTTTAT+AGG + tig0020262:107212-107231 Msa1379100:intergenic 50.0%
!!! CTGGGCTTGTTTTATCCTGG+AGG - tig0020262:107755-107774 Msa1379100:intron 50.0%
!!! GGCTTGTTTTATCCTGGAGG+CGG - tig0020262:107758-107777 Msa1379100:intron 50.0%
GCACTACCCAAAGTTGTGCA+AGG + tig0020262:107800-107819 Msa1379100:intergenic 50.0%
ACGTCTTAAAGAGAGCGACC+TGG - tig0020262:107826-107845 Msa1379100:intron 50.0%
! TACTAGGTTGAGTCACGACC+AGG + tig0020262:107847-107866 Msa1379100:intergenic 50.0%
!! AAGAATAGTGGGGGCACTAG+TGG - tig0020262:109184-109203 Msa1379100:intron 50.0%
!! AGAATAGTGGGGGCACTAGT+GGG - tig0020262:109185-109204 Msa1379100:intron 50.0%
! ATGGGAGCACGACATTAGTG+GGG - tig0020262:109215-109234 Msa1379100:intron 50.0%
GAGCATCATTGGCAGCACTT+AGG - tig0020262:110252-110271 Msa1379100:intron 50.0%
AGGCATTAGTCCCATCCTAC+TGG + tig0020262:110880-110899 Msa1379100:intergenic 50.0%
TGCCTATAGCCCACAAGTGA+TGG - tig0020262:110895-110914 Msa1379100:intron 50.0%
GTCGGGTTACCATCACTTGT+GGG + tig0020262:110907-110926 Msa1379100:intergenic 50.0%
GATCTCCAGTCATGTAGGTC+GGG + tig0020262:110924-110943 Msa1379100:intergenic 50.0%
GGATCTCCAGTCATGTAGGT+CGG + tig0020262:110925-110944 Msa1379100:intergenic 50.0%
CTTGGGATCTCCAGTCATGT+AGG + tig0020262:110929-110948 Msa1379100:intergenic 50.0%
CATGATCCTGCAGCGAAAGA+AGG - tig0020262:111019-111038 Msa1379100:intron 50.0%
TGGAACTTAGGCCGATCCTA+TGG - tig0020262:111137-111156 Msa1379100:intron 50.0%
GCCGATCCTATGGAATTTCG+AGG - tig0020262:111147-111166 Msa1379100:intron 50.0%
TAAAACCGGGATACACGTGC+AGG - tig0020262:111191-111210 Msa1379100:intron 50.0%
AAAACCGGGATACACGTGCA+GGG - tig0020262:111192-111211 Msa1379100:intron 50.0%
GAAGTCAAGTGGGGGATTGT+TGG - tig0020262:111417-111436 Msa1379100:intron 50.0%
TTGGGGTGACCGTTCAATGT+GGG + tig0020262:106863-106882 Msa1379100:intergenic 50.0%
! GGGCGAGCTCTCCTTTTTAT+AGG + tig0020262:107212-107231 Msa1379100:intergenic 50.0%
!!! CTGGGCTTGTTTTATCCTGG+TGG - tig0020262:107755-107774 Msa1379100:intron 50.0%
!!! GGCTTGTTTTATCCTGGTGG+CGG - tig0020262:112411-112430 Msa1379100:intron 50.0%
GCACTACCCAAAGTTGTGCA+AGG + tig0020262:107800-107819 Msa1379100:intergenic 50.0%
ACGTCTTAAAGAGAGCGACC+TGG - tig0020262:107826-107845 Msa1379100:intron 50.0%
! TACTAGGTTGAGTCACGACC+AGG + tig0020262:107847-107866 Msa1379100:intergenic 50.0%
GGCAGTCATTAACTGGGTCA+AGG + tig0020262:113516-113535 Msa1379100:intergenic 50.0%
TTATAGACCCGAGTTGCGAG+TGG - tig0020262:114065-114084 Msa1379100:intron 50.0%
TTTCAAGCCACTCGCAACTC+GGG + tig0020262:114075-114094 Msa1379100:intergenic 50.0%
CATTGGCCCAATAACCCATG+AGG + tig0020262:114299-114318 Msa1379100:intergenic 50.0%
!! TGCAGGGAAGTGTTGCGAAA+TGG - tig0020262:114545-114564 Msa1379100:intron 50.0%
AATGGTTGATTGAGCCCACC+CGG - tig0020262:115059-115078 Msa1379100:intron 50.0%
CATTCTTTAGGCCGGTACTC+TGG + tig0020262:115373-115392 Msa1379100:intergenic 50.0%
GCACAAAAGGAAGGGGTCCT+TGG + tig0020262:105208-105227 Msa1379100:intergenic 55.0%
! CTATGGCTAACTGGTGGACC+TGG - tig0020262:105404-105423 Msa1379100:intron 55.0%
CCAGACAAAGCAGAGCAACC+AGG + tig0020262:105425-105444 Msa1379100:intergenic 55.0%
CCTGGTTGCTCTGCTTTGTC+TGG - tig0020262:105422-105441 Msa1379100:intron 55.0%
ACAAGTCGGAGGGAGAAGAG+AGG + tig0020262:107286-107305 Msa1379100:intergenic 55.0%
CGGTTACGTACCGTATCGAG+TGG - tig0020262:107646-107665 Msa1379100:intron 55.0%
!! GAATAGTGGGGGCACTAGTG+GGG - tig0020262:109186-109205 Msa1379100:intron 55.0%
!! AATAGTGGGGGCACTAGTGG+GGG - tig0020262:109187-109206 Msa1379100:intron 55.0%
! GCACTAGTGGGGGCTCTAAT+GGG - tig0020262:109197-109216 Msa1379100:intron 55.0%
! TGGGAGCACGACATTAGTGG+GGG - tig0020262:109216-109235 Msa1379100:intron 55.0%
GGTCGGGTTACCATCACTTG+TGG + tig0020262:110908-110927 Msa1379100:intergenic 55.0%
GGTAACCCGACCTACATGAC+TGG - tig0020262:110916-110935 Msa1379100:intron 55.0%
CCTCATCCTTCTTTCGCTGC+AGG + tig0020262:111028-111047 Msa1379100:intergenic 55.0%
CCTGCAGCGAAAGAAGGATG+AGG - tig0020262:111025-111044 Msa1379100:intron 55.0%
TGAGTGGGGTACACAGCTAC+AGG - tig0020262:111083-111102 Msa1379100:intron 55.0%
GTGCAGGGCCTTAAAACGCA+CGG - tig0020262:111207-111226 Msa1379100:intron 55.0%
TGCAGGGCCTTAAAACGCAC+GGG - tig0020262:111208-111227 Msa1379100:intron 55.0%
GTTGGGGTGACCGTTCAATG+TGG + tig0020262:111526-111545 Msa1379100:intergenic 55.0%
ACAAGTCGGAGGGAGAAGAG+AGG + tig0020262:107286-107305 Msa1379100:intergenic 55.0%
CGGTTACGTACCGTATCGAG+TGG - tig0020262:107646-107665 Msa1379100:intron 55.0%
GACACACAGCTCCAGAGTAC+CGG - tig0020262:115359-115378 Msa1379100:five_prime_UTR 55.0%
GGAAGGGGTCCTTGGAATCC+AGG + tig0020262:105200-105219 Msa1379100:intergenic 60.0%
! ACCTCCAAGGGTGTGCCCTT+GGG - tig0020262:106912-106931 Msa1379100:intron 60.0%
! GTTTTATCCTGGAGGCGGCG+TGG - tig0020262:107763-107782 Msa1379100:intron 60.0%
! GGCACTAGTGGGGGCTCTAA+TGG - tig0020262:109196-109215 Msa1379100:intron 60.0%
AAGGCCCTGCACGTGTATCC+CGG + tig0020262:111199-111218 Msa1379100:intergenic 60.0%
! ACCTCCAAGGGTGTGCCCTT+GGG - tig0020262:106912-106931 Msa1379100:intron 60.0%
!!! GTTTTATCCTGGTGGCGGCG+TGG - tig0020262:112416-112435 Msa1379100:intron 60.0%
! GACCTCCAAGGGTGTGCCCT+TGG - tig0020262:106911-106930 Msa1379100:intron 65.0%
! CCTCCAAGGGTGTGCCCTTG+GGG - tig0020262:106913-106932 Msa1379100:intron 65.0%
! GTACCCCAAGGGCACACCCT+TGG + tig0020262:106919-106938 Msa1379100:intergenic 65.0%
CTATCAACCACGCCGCCTCC+AGG + tig0020262:107773-107792 Msa1379100:intergenic 65.0%
! GACCTCCAAGGGTGTGCCCT+TGG - tig0020262:106911-106930 Msa1379100:intron 65.0%
! CCTCCAAGGGTGTGCCCTTG+GGG - tig0020262:106913-106932 Msa1379100:intron 65.0%
! GTACCCCAAGGGCACACCCT+TGG + tig0020262:106919-106938 Msa1379100:intergenic 65.0%
CTATCAACCACGCCGCCACC+AGG + tig0020262:112426-112445 Msa1379100:intergenic 65.0%
! CCCCAAGGGCACACCCTTGG+AGG + tig0020262:106916-106935 Msa1379100:intergenic 70.0%
! CCCCAAGGGCACACCCTTGG+AGG + tig0020262:106916-106935 Msa1379100:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020262 gene 104862 115525 104862 ID=Msa1379100;Name=Msa1379100
tig0020262 mRNA 104862 115525 104862 ID=Msa1379100-mRNA-1;Parent=Msa1379100;Name=Msa1379100-mRNA-1;_AED=0.29;_eAED=0.30;_QI=227|0.57|1|1|1|1|8|90|296
tig0020262 exon 104862 105035 104862 ID=Msa1379100-mRNA-1:exon:6424;Parent=Msa1379100-mRNA-1
tig0020262 exon 106034 106105 106034 ID=Msa1379100-mRNA-1:exon:6423;Parent=Msa1379100-mRNA-1
tig0020262 exon 106210 106350 106210 ID=Msa1379100-mRNA-1:exon:6422;Parent=Msa1379100-mRNA-1
tig0020262 exon 107196 107294 107196 ID=Msa1379100-mRNA-1:exon:6421;Parent=Msa1379100-mRNA-1
tig0020262 exon 113690 113812 113690 ID=Msa1379100-mRNA-1:exon:6420;Parent=Msa1379100-mRNA-1
tig0020262 exon 113940 114016 113940 ID=Msa1379100-mRNA-1:exon:6419;Parent=Msa1379100-mRNA-1
tig0020262 exon 114926 115071 114926 ID=Msa1379100-mRNA-1:exon:6418;Parent=Msa1379100-mRNA-1
tig0020262 exon 115150 115525 115150 ID=Msa1379100-mRNA-1:exon:6417;Parent=Msa1379100-mRNA-1
tig0020262 five_prime_UTR 115299 115525 115299 ID=Msa1379100-mRNA-1:five_prime_utr;Parent=Msa1379100-mRNA-1
tig0020262 CDS 115150 115298 115150 ID=Msa1379100-mRNA-1:cds;Parent=Msa1379100-mRNA-1
tig0020262 CDS 114926 115071 114926 ID=Msa1379100-mRNA-1:cds;Parent=Msa1379100-mRNA-1
tig0020262 CDS 113940 114016 113940 ID=Msa1379100-mRNA-1:cds;Parent=Msa1379100-mRNA-1
tig0020262 CDS 113690 113812 113690 ID=Msa1379100-mRNA-1:cds;Parent=Msa1379100-mRNA-1
tig0020262 CDS 107196 107294 107196 ID=Msa1379100-mRNA-1:cds;Parent=Msa1379100-mRNA-1
tig0020262 CDS 106210 106350 106210 ID=Msa1379100-mRNA-1:cds;Parent=Msa1379100-mRNA-1
tig0020262 CDS 106034 106105 106034 ID=Msa1379100-mRNA-1:cds;Parent=Msa1379100-mRNA-1
tig0020262 CDS 104952 105035 104952 ID=Msa1379100-mRNA-1:cds;Parent=Msa1379100-mRNA-1
tig0020262 three_prime_UTR 104862 104951 104862 ID=Msa1379100-mRNA-1:three_prime_utr;Parent=Msa1379100-mRNA-1
Gene Sequence

>Msa1379100

ATGACAAAGTTTAGTTCAACTTATGGGAAGGTTCTTCTTTCTGTTTTTCTTTTATTATCACATATTTGCTTTCAAGTTGCAACATGTGGCTCTATAGTGAAGTTTCTTCCTGGATTCCAAGGACCCCTTCCTTTTGTGCTTGAAACCAGGTATGTGGGAGTTGGTGAGAAAGAGGATGTGCAAGTGTTTTACTATTTCATTGAATCAGAAAAGAATCCAAAGGATGATCCTCTCATACTATGGCTAACTGGTGGACCTGGTTGCTCTGCTTTGTCTGGTCTAATGCTTGAAATTGGTCCACTTGAGTTAAAAAAGGAGGAATACAATGGGAGTCTACCTAATCTGATCTTGAGGCAACATTCATGGACAAAGGTGAGTAGTATTATATTTGTAGATTTGCCGGTTTCCACAGGCTTCACTTATGCCACAGCAGAATCCGGTGCTAAACGAAGCGATTCAATACTAGTTCACCAAGTTCATCAATTTCTCAGGAAGGGATACTTGTTGGGGAATGCTGCAACAACCAGAAAGGAGAAAAACTATGTAATCCCTTTTGCTCATGGAATGGGACTCATATCCGATGAACTATACGACGTCACATCAGGAATTAATAAAGCACATATTATAGACCCGAGTTGCGAGTGGCTTGAAAATTCTCCAAGGAAATCTCTAATGAAAAAAGATTCCACCAATTTCCTCAACACAAATCTCAAATTGCCACTTTTAAGCTGTCGAAGTTATCCATATTTCCTCATGGGTTATTGGGCCAATGATGATAATGTTCGCAAAGCGCTACATATTCAGAAGGGTGGAGGACACACAGCTCCAGAGTACCGGCCTAAAGAATGTTTTGACATGTTTAGTAGGTGGATATCTAAGAGAGCTTTGTAA
Protein sequence

>Msa1379100

MTKFSSTYGKVLLSVFLLLSHICFQVATCGSIVKFLPGFQGPLPFVLETRYVGVGEKEDVQVFYYFIESEKNPKDDPLILWLTGGPGCSALSGLMLEIGPLELKKEEYNGSLPNLILRQHSWTKVSSIIFVDLPVSTGFTYATAESGAKRSDSILVHQVHQFLRKGYLLGNAATTRKEKNYVIPFAHGMGLISDELYDVTSGINKAHIIDPSCEWLENSPRKSLMKKDSTNFLNTNLKLPLLSCRSYPYFLMGYWANDDNVRKALHIQKGGGHTAPEYRPKECFDMFSRWISKRAL*