AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379390 MtrunA17_Chr3g0125801 96.507 229 6 1 1 229 1 227 2.68e-168 465
Msa1379390 MtrunA17_Chr4g0042501 62.428 173 56 4 11 175 100 271 2.65e-67 213
Msa1379390 MtrunA17_Chr5g0417621 77.600 125 27 1 11 134 129 253 1.30e-65 209
Msa1379390 MtrunA17_Chr6g0480581 63.522 159 54 3 14 168 2 160 1.40e-65 202
Msa1379390 MtrunA17_Chr7g0254261 54.737 190 75 3 1 187 71 252 1.70e-60 193
Msa1379390 MtrunA17_Chr6g0460671 70.909 110 32 0 10 119 93 202 1.15e-55 181
Msa1379390 MtrunA17_Chr6g0460661 51.007 149 70 1 16 164 16 161 8.54e-50 160
Msa1379390 MtrunA17_Chr4g0008551 62.376 101 38 0 16 116 38 138 8.64e-43 147
Msa1379390 MtrunA17_Chr5g0401731 56.436 101 44 0 16 116 15 115 6.79e-38 134
Msa1379390 MtrunA17_Chr6g0454921 51.695 118 50 1 16 133 15 125 7.07e-38 131
Msa1379390 MtrunA17_Chr3g0133601 57.426 101 43 0 16 116 37 137 1.12e-37 131
Msa1379390 MtrunA17_Chr5g0437321 51.887 106 51 0 5 110 8 113 1.75e-36 129
Msa1379390 MtrunA17_Chr4g0053431 55.446 101 45 0 16 116 5 105 3.49e-36 128
Msa1379390 MtrunA17_Chr7g0238631 53.465 101 47 0 16 116 113 213 2.05e-32 123
Msa1379390 MtrunA17_Chr5g0429661 39.759 166 86 2 6 165 112 269 8.54e-32 119
Msa1379390 MtrunA17_Chr3g0139671 49.505 101 51 0 16 116 85 185 5.53e-31 120
Msa1379390 MtrunA17_Chr1g0157731 49.505 101 51 0 16 116 91 191 1.00e-30 119
Msa1379390 MtrunA17_Chr4g0058991 37.255 204 105 5 16 219 209 389 1.16e-29 114
Msa1379390 MtrunA17_Chr3g0117511 47.368 114 57 1 16 129 183 293 6.00e-28 110
Msa1379390 MtrunA17_Chr1g0203441 43.590 117 63 2 16 130 15 130 7.35e-28 106
Msa1379390 MtrunA17_Chr5g0397841 52.174 92 44 0 19 110 113 204 2.31e-27 108
Msa1379390 MtrunA17_Chr6g0470971 38.346 133 79 2 16 146 16 147 2.65e-27 105
Msa1379390 MtrunA17_Chr7g0228531 48.673 113 56 2 16 128 220 330 3.05e-27 107
Msa1379390 MtrunA17_Chr2g0311221 50.485 103 48 2 10 110 10 111 6.35e-27 105
Msa1379390 MtrunA17_Chr4g0022901 49.515 103 49 2 16 116 15 116 6.38e-27 104
Msa1379390 MtrunA17_Chr4g0055981 38.400 125 76 1 16 139 57 181 1.15e-26 102
Msa1379390 MtrunA17_Chr4g0022911 40.268 149 76 4 16 152 15 162 1.20e-26 103
Msa1379390 MtrunA17_Chr2g0323351 45.370 108 56 2 10 115 8 114 1.43e-26 102
Msa1379390 MtrunA17_Chr2g0309911 49.515 103 49 2 16 116 13 114 1.55e-26 104
Msa1379390 MtrunA17_Chr3g0115821 46.789 109 55 2 10 116 8 115 1.93e-26 104
Msa1379390 MtrunA17_Chr1g0187761 43.966 116 62 2 16 129 14 128 2.59e-26 102
Msa1379390 MtrunA17_Chr3g0103281 47.573 103 51 2 16 116 14 115 4.21e-26 103
Msa1379390 MtrunA17_Chr5g0417821 45.098 102 55 1 16 116 9 110 6.12e-26 102
Msa1379390 MtrunA17_Chr4g0022931 48.544 103 50 2 16 116 15 116 6.58e-26 101
Msa1379390 MtrunA17_Chr7g0274581 46.078 102 54 1 16 116 14 115 7.87e-26 99.8
Msa1379390 MtrunA17_Chr8g0360111 45.794 107 57 1 9 114 20 126 9.85e-26 100
Msa1379390 MtrunA17_Chr4g0058631 43.925 107 57 2 16 120 14 119 1.09e-25 102
Msa1379390 MtrunA17_Chr4g0022881 44.660 103 54 2 10 110 8 109 1.14e-25 100
Msa1379390 MtrunA17_Chr7g0270891 44.860 107 56 2 16 120 14 119 1.21e-25 102
Msa1379390 MtrunA17_Chr8g0342541 42.975 121 66 2 16 134 14 133 2.10e-25 101
Msa1379390 MtrunA17_Chr8g0387421 46.729 107 54 2 16 120 14 119 2.77e-25 100
Msa1379390 MtrunA17_Chr5g0397231 52.083 96 43 2 16 109 14 108 3.44e-25 100
Msa1379390 MtrunA17_Chr1g0193801 43.925 107 57 2 16 120 14 119 6.33e-25 100
Msa1379390 MtrunA17_Chr1g0193371 43.396 106 57 2 16 119 14 118 8.00e-25 100
Msa1379390 MtrunA17_Chr5g0434911 41.667 108 62 1 11 117 18 125 8.32e-25 99.0
Msa1379390 MtrunA17_Chr5g0410961 43.519 108 60 1 10 116 8 115 9.10e-25 100
Msa1379390 MtrunA17_Chr3g0117091 44.860 107 56 2 16 120 14 119 9.30e-25 100
Msa1379390 MtrunA17_Chr1g0154031 43.307 127 64 3 16 140 78 198 9.45e-25 100
Msa1379390 MtrunA17_Chr5g0435101 45.872 109 56 2 10 116 7 114 1.06e-24 97.1
Msa1379390 MtrunA17_Chr1g0211161 43.925 107 57 2 16 120 15 120 1.09e-24 97.4
Msa1379390 MtrunA17_Chr5g0441131 41.406 128 65 5 4 129 2 121 1.31e-24 96.3
Msa1379390 MtrunA17_Chr4g0022891 39.844 128 65 4 10 134 8 126 1.36e-24 97.4
Msa1379390 MtrunA17_Chr1g0203411 45.283 106 55 2 16 119 14 118 1.88e-24 98.2
Msa1379390 MtrunA17_Chr8g0385321 45.098 102 55 1 16 116 14 115 2.00e-24 98.6
Msa1379390 MtrunA17_Chr5g0434831 41.284 109 63 1 9 116 2 110 2.29e-24 95.5
Msa1379390 MtrunA17_Chr3g0099131 43.810 105 58 1 16 119 43 147 2.73e-24 100
Msa1379390 MtrunA17_Chr1g0167691 44.860 107 56 2 12 116 10 115 2.86e-24 97.1
Msa1379390 MtrunA17_Chr8g0342521 35.955 178 93 5 16 178 14 185 3.13e-24 98.6
Msa1379390 MtrunA17_Chr2g0330041 48.544 103 50 2 16 116 14 115 3.14e-24 99.4
Msa1379390 MtrunA17_Chr7g0228481 50.526 95 46 1 16 110 220 313 3.29e-24 99.4
Msa1379390 MtrunA17_Chr4g0037141 46.602 103 52 2 16 116 14 115 3.68e-24 97.4
Msa1379390 MtrunA17_Chr5g0395281 42.478 113 62 2 6 116 4 115 4.13e-24 97.4
Msa1379390 MtrunA17_Chr5g0434931 40.909 110 64 1 9 117 30 139 4.98e-24 97.1
Msa1379390 MtrunA17_Chr3g0131121 45.631 103 53 2 16 116 14 115 5.70e-24 97.1
Msa1379390 MtrunA17_Chr5g0434841 42.202 109 62 1 9 116 15 123 6.24e-24 97.4
Msa1379390 MtrunA17_Chr7g0228401 51.190 84 41 0 27 110 290 373 6.58e-24 99.0
Msa1379390 MtrunA17_Chr1g0192411 39.669 121 68 2 4 123 2 118 6.66e-24 98.6
Msa1379390 MtrunA17_Chr8g0342481 39.241 158 77 4 16 154 14 171 7.00e-24 98.2
Msa1379390 MtrunA17_Chr7g0220341 40.541 111 63 1 9 116 20 130 7.48e-24 96.3
Msa1379390 MtrunA17_Chr7g0271241 47.423 97 48 2 16 110 14 109 7.58e-24 97.8
Msa1379390 MtrunA17_Chr1g0180391 41.176 136 75 4 7 138 12 146 8.68e-24 95.1
Msa1379390 MtrunA17_Chr2g0281071 42.857 112 61 2 7 116 6 116 9.05e-24 97.4
Msa1379390 MtrunA17_Chr5g0400821 40.833 120 63 3 10 127 8 121 1.33e-23 96.3
Msa1379390 MtrunA17_Chr4g0039971 44.037 109 58 2 10 116 9 116 1.34e-23 97.1
Msa1379390 MtrunA17_Chr8g0346561 40.909 110 64 1 16 124 14 123 1.39e-23 95.9
Msa1379390 MtrunA17_Chr8g0354661 41.129 124 70 2 16 137 39 161 1.86e-23 98.2
Msa1379390 MtrunA17_Chr3g0135311 40.367 109 63 2 10 116 8 116 1.89e-23 96.3
Msa1379390 MtrunA17_Chr7g0228991 42.157 102 58 1 16 116 31 132 2.07e-23 95.1
Msa1379390 MtrunA17_Chr6g0452271 42.593 108 61 1 10 116 8 115 2.26e-23 95.9
Msa1379390 MtrunA17_Chr4g0048511 43.750 112 60 2 7 116 6 116 3.58e-23 95.9
Msa1379390 MtrunA17_Chr8g0349261 47.115 104 51 3 16 116 15 117 3.58e-23 94.7
Msa1379390 MtrunA17_Chr4g0032401 42.593 108 59 2 16 121 19 125 4.04e-23 95.5
Msa1379390 MtrunA17_Chr7g0228891 44.144 111 59 2 10 118 8 117 4.28e-23 94.4
Msa1379390 MtrunA17_Chr4g0028311 42.202 109 61 2 10 116 8 116 5.99e-23 94.7
Msa1379390 MtrunA17_Chr4g0030881 45.217 115 54 3 16 122 9 122 6.31e-23 93.6
Msa1379390 MtrunA17_Chr7g0275911 40.367 109 64 1 16 123 14 122 8.98e-23 92.8
Msa1379390 MtrunA17_Chr8g0334881 47.619 105 53 2 7 109 3 107 9.72e-23 94.0
Msa1379390 MtrunA17_Chr5g0440781 43.750 112 53 5 10 118 11 115 9.78e-23 91.3
Msa1379390 MtrunA17_Chr1g0152011 40.367 109 63 2 10 116 8 116 1.07e-22 94.4
Msa1379390 MtrunA17_Chr3g0121241 42.157 102 58 1 16 116 44 145 1.39e-22 93.6
Msa1379390 MtrunA17_Chr8g0343831 40.000 110 65 1 12 120 6 115 1.60e-22 92.4
Msa1379390 MtrunA17_Chr1g0194301 37.209 129 78 2 7 133 26 153 1.62e-22 92.8
Msa1379390 MtrunA17_Chr5g0440761 42.342 111 56 4 10 118 11 115 1.73e-22 92.4
Msa1379390 MtrunA17_Chr5g0441141 42.342 111 56 4 10 118 11 115 1.94e-22 92.4
Msa1379390 MtrunA17_Chr7g0217221 39.640 111 66 1 10 119 8 118 2.14e-22 92.4
Msa1379390 MtrunA17_Chr1g0167661 42.056 107 59 2 12 116 10 115 2.47e-22 91.7
Msa1379390 MtrunA17_Chr2g0328771 41.121 107 62 1 16 121 22 128 2.54e-22 92.8
Msa1379390 MtrunA17_Chr4g0070641 39.048 105 63 1 16 119 14 118 2.54e-22 89.7
Msa1379390 MtrunA17_Chr4g0070611 39.048 105 63 1 16 119 14 118 2.81e-22 92.8
Msa1379390 MtrunA17_Chr7g0261281 43.137 102 57 1 16 116 14 115 3.55e-22 91.7
Msa1379390 MtrunA17_Chr7g0240821 45.000 100 52 2 19 116 6 104 3.84e-22 90.9
Msa1379390 MtrunA17_Chr2g0327821 38.255 149 81 5 16 162 8 147 5.72e-22 90.5
Msa1379390 MtrunA17_Chr4g0054391 41.748 103 58 2 10 110 8 110 6.38e-22 91.3
Msa1379390 MtrunA17_Chr3g0088461 44.762 105 55 2 16 118 24 127 7.46e-22 92.0
Msa1379390 MtrunA17_Chr1g0186061 42.857 105 57 2 16 118 22 125 7.52e-22 90.5
Msa1379390 MtrunA17_Chr4g0044421 42.157 102 58 1 16 116 14 115 8.35e-22 89.0
Msa1379390 MtrunA17_Chr1g0209661 39.130 115 69 1 16 129 29 143 9.16e-22 91.3
Msa1379390 MtrunA17_Chr3g0080861 43.810 105 56 2 16 118 39 142 9.82e-22 93.2
Msa1379390 MtrunA17_Chr2g0327351 41.346 104 59 2 10 111 8 111 1.05e-21 91.3
Msa1379390 MtrunA17_Chr1g0151941 41.284 109 62 2 10 116 8 116 1.17e-21 90.1
Msa1379390 MtrunA17_Chr2g0323411 42.202 109 60 2 10 116 8 115 1.50e-21 90.9
Msa1379390 MtrunA17_Chr1g0177901 41.176 102 58 1 27 128 5 104 1.59e-21 88.6
Msa1379390 MtrunA17_Chr1g0194951 41.818 110 61 2 16 123 14 122 2.05e-21 91.3
Msa1379390 MtrunA17_Chr1g0168661 44.762 105 55 2 16 118 23 126 2.97e-21 89.0
Msa1379390 MtrunA17_Chr7g0264641 38.532 109 65 2 10 116 8 116 3.71e-21 89.0
Msa1379390 MtrunA17_Chr2g0322521 45.378 119 61 3 3 118 17 134 4.24e-21 90.5
Msa1379390 MtrunA17_Chr6g0453471 39.450 109 63 2 10 116 8 115 5.92e-21 89.7
Msa1379390 MtrunA17_Chr4g0060721 43.137 102 57 1 16 116 15 116 6.42e-21 89.4
Msa1379390 MtrunA17_Chr4g0068061 38.333 120 68 2 16 134 14 128 6.65e-21 89.4
Msa1379390 MtrunA17_Chr4g0042671 41.748 103 57 2 16 116 14 115 7.80e-21 89.7
Msa1379390 MtrunA17_Chr7g0217741 41.176 102 59 1 16 116 14 115 8.19e-21 88.6
Msa1379390 MtrunA17_Chr4g0072751 41.346 104 59 2 10 111 8 111 1.13e-20 89.0
Msa1379390 MtrunA17_Chr1g0194291 34.328 134 87 1 1 133 8 141 1.57e-20 87.0
Msa1379390 MtrunA17_Chr6g0453211 39.806 103 61 1 10 111 8 110 2.33e-20 87.4
Msa1379390 MtrunA17_Chr4g0013361 45.714 105 55 2 16 118 12 116 3.55e-20 86.7
Msa1379390 MtrunA17_Chr7g0228231 40.323 124 68 3 2 122 5 125 4.27e-20 84.7
Msa1379390 MtrunA17_Chr4g0057031 42.202 109 60 2 10 116 8 115 5.14e-20 85.9
Msa1379390 MtrunA17_Chr7g0254411 41.176 102 59 1 16 116 14 115 1.12e-19 85.9
Msa1379390 MtrunA17_Chr7g0247131 50.633 79 37 1 42 118 5 83 1.86e-19 84.3
Msa1379390 MtrunA17_Chr3g0092401 35.897 117 74 1 16 131 15 131 2.13e-19 84.7
Msa1379390 MtrunA17_Chr3g0110351 39.823 113 65 2 10 120 8 119 2.40e-19 84.7
Msa1379390 MtrunA17_Chr5g0425591 44.681 94 45 4 4 94 2 91 4.27e-19 79.0
Msa1379390 MtrunA17_Chr4g0068921 42.857 105 59 1 6 109 16 120 6.50e-19 81.3
Msa1379390 MtrunA17_Chr6g0450101 39.496 119 68 3 16 132 16 132 6.85e-19 81.6
Msa1379390 MtrunA17_Chr5g0434571 40.179 112 64 2 10 119 44 154 7.04e-19 84.0
Msa1379390 MtrunA17_Chr7g0233061 41.414 99 56 1 11 109 175 271 7.89e-19 84.0
Msa1379390 MtrunA17_Chr7g0238651 40.187 107 61 1 16 119 7 113 8.29e-19 84.0
Msa1379390 MtrunA17_Chr6g0487491 39.316 117 61 3 10 116 8 124 1.16e-18 82.0
Msa1379390 MtrunA17_Chr2g0293911 34.646 127 82 1 8 133 18 144 1.31e-17 80.1
Msa1379390 MtrunA17_Chr8g0362231 33.333 111 74 0 19 129 25 135 1.87e-17 80.5
Msa1379390 MtrunA17_Chr5g0416341 34.921 126 69 2 19 144 29 141 2.24e-17 80.5
Msa1379390 MtrunA17_Chr5g0434901 53.968 63 29 0 48 110 8 70 2.52e-17 75.1
Msa1379390 MtrunA17_Chr7g0269831 43.137 102 57 1 16 116 14 115 1.79e-16 77.0
Msa1379390 MtrunA17_Chr7g0229101 53.226 62 29 0 49 110 8 69 3.56e-16 74.3
Msa1379390 MtrunA17_Chr3g0099141 39.326 89 53 1 10 97 36 124 1.49e-15 71.2
Msa1379390 MtrunA17_Chr8g0342511 48.000 75 36 2 16 88 14 87 3.29e-15 68.9
Msa1379390 MtrunA17_Chr8g0342531 45.455 77 39 2 16 90 14 89 3.43e-15 70.9
Msa1379390 MtrunA17_Chr7g0229131 43.210 81 39 1 49 122 8 88 6.97e-15 70.1
Msa1379390 MtrunA17_Chr8g0342461 45.455 77 40 1 16 90 14 90 1.17e-14 68.6
Msa1379390 MtrunA17_Chr3g0093811 46.377 69 35 2 49 116 18 85 1.95e-14 70.5
Msa1379390 MtrunA17_Chr2g0323321 37.374 99 59 2 10 106 7 104 2.54e-14 67.0
Msa1379390 MtrunA17_Chr6g0453751 36.893 103 55 4 2 94 8 110 2.83e-14 67.4
Msa1379390 MtrunA17_Chr8g0342471 44.156 77 41 1 16 90 14 90 4.31e-14 67.0
Msa1379390 MtrunA17_Chr3g0104501 55.556 54 24 0 13 66 130 183 1.18e-13 67.4
Msa1379390 MtrunA17_Chr5g0395221 41.333 75 43 1 16 89 14 88 3.36e-13 63.2
Msa1379390 MtrunA17_Chr4g0042611 38.667 75 45 1 16 89 14 88 1.25e-12 61.6
Msa1379390 MtrunA17_Chr6g0483051 36.264 91 57 1 19 109 72 161 1.98e-12 65.9
Msa1379390 MtrunA17_Chr6g0483051 33.333 120 69 3 14 123 116 234 3.40e-11 62.4
Msa1379390 MtrunA17_Chr7g0274481 38.824 85 51 1 17 101 8 91 8.67e-12 64.3
Msa1379390 MtrunA17_Chr7g0233151 46.032 63 33 1 66 128 1 62 1.55e-11 60.8
Msa1379390 MtrunA17_Chr5g0421201 53.846 52 21 1 71 122 15 63 5.45e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379390 AT1G17950.1 84.545 110 17 0 14 123 3 112 6.71e-68 209
Msa1379390 AT1G69560.1 84.404 109 17 0 13 121 104 212 2.11e-64 203
Msa1379390 AT1G69560.2 84.404 109 17 0 13 121 120 228 3.02e-64 203
Msa1379390 AT1G73410.1 85.321 109 16 0 14 122 4 112 2.43e-63 197
Msa1379390 AT1G73410.2 85.321 109 16 0 14 122 4 112 4.53e-63 195
Msa1379390 AT1G26780.1 78.947 114 24 0 16 129 98 211 9.18e-63 197
Msa1379390 AT1G26780.2 78.947 114 24 0 16 129 98 211 4.31e-62 198
Msa1379390 AT5G17800.1 76.991 113 26 0 10 122 87 199 4.32e-61 194
Msa1379390 AT4G33450.1 51.244 201 90 3 1 196 3 200 5.53e-61 192
Msa1379390 AT3G29020.1 72.973 111 30 0 11 121 60 170 1.26e-58 185
Msa1379390 AT3G29020.2 72.973 111 30 0 11 121 62 172 7.54e-58 186
Msa1379390 AT5G39700.1 58.407 113 47 0 9 121 49 161 1.07e-41 140
Msa1379390 AT2G39880.1 52.941 119 56 0 5 123 39 157 2.93e-38 136
Msa1379390 AT5G67300.1 59.406 101 41 0 16 116 6 106 3.87e-38 134
Msa1379390 AT3G50060.1 57.426 101 43 0 16 116 6 106 1.11e-37 133
Msa1379390 AT3G09230.1 37.156 218 122 6 16 228 55 262 3.12e-37 134
Msa1379390 AT3G55730.1 55.446 101 45 0 16 116 56 156 1.39e-36 132
Msa1379390 AT4G37260.1 50.459 109 54 0 16 124 13 121 2.61e-35 127
Msa1379390 AT2G23290.1 54.455 101 46 0 16 116 13 113 3.83e-35 127
Msa1379390 AT3G09370.1 55.446 101 45 0 16 116 130 230 8.11e-34 127
Msa1379390 AT3G09370.2 55.446 101 45 0 16 116 135 235 9.41e-34 127
Msa1379390 AT3G09370.3 55.446 101 45 0 16 116 143 243 1.40e-33 126
Msa1379390 AT5G11510.3 49.505 101 51 0 16 116 81 181 3.91e-31 120
Msa1379390 AT5G11510.1 49.505 101 51 0 16 116 81 181 3.91e-31 120
Msa1379390 AT5G11510.4 49.505 101 51 0 16 116 81 181 3.91e-31 120
Msa1379390 AT5G11510.5 49.505 101 51 0 16 116 81 181 4.77e-31 120
Msa1379390 AT5G11510.2 49.505 101 51 0 16 116 81 181 4.92e-31 120
Msa1379390 AT5G11050.1 49.606 127 60 2 12 138 101 223 9.78e-31 117
Msa1379390 AT5G58850.1 47.967 123 61 1 5 127 94 213 1.06e-30 117
Msa1379390 AT5G02320.1 50.495 101 50 0 16 116 127 227 1.28e-30 118
Msa1379390 AT5G02320.2 50.495 101 50 0 16 116 127 227 1.28e-30 118
Msa1379390 AT5G02320.3 50.495 101 50 0 16 116 67 167 1.45e-30 118
Msa1379390 AT3G27785.1 38.462 156 92 2 13 168 186 337 2.72e-30 116
Msa1379390 AT5G40360.1 46.729 107 57 0 16 122 158 264 1.82e-29 113
Msa1379390 AT4G32730.5 47.525 101 53 0 16 116 87 187 2.69e-29 115
Msa1379390 AT4G32730.4 47.525 101 53 0 16 116 87 187 2.69e-29 115
Msa1379390 AT4G32730.3 47.525 101 53 0 16 116 87 187 2.69e-29 115
Msa1379390 AT4G32730.2 47.525 101 53 0 16 116 87 187 2.69e-29 115
Msa1379390 AT4G32730.1 47.525 101 53 0 16 116 87 187 3.07e-29 115
Msa1379390 AT5G14750.1 45.614 114 61 1 4 116 6 119 3.57e-29 108
Msa1379390 AT3G12720.1 51.402 107 49 2 16 120 24 129 6.06e-29 110
Msa1379390 AT5G40330.1 47.059 102 53 1 16 116 14 115 7.35e-28 105
Msa1379390 AT4G25560.1 41.429 140 61 3 16 135 12 150 9.69e-28 107
Msa1379390 AT3G48920.1 47.788 113 52 3 16 122 20 131 2.02e-27 105
Msa1379390 AT1G18570.1 47.059 102 53 1 16 116 15 116 3.14e-27 107
Msa1379390 AT4G18770.1 49.533 107 51 1 16 122 217 320 3.67e-27 107
Msa1379390 AT1G79180.1 46.789 109 55 2 10 116 10 117 7.19e-27 105
Msa1379390 AT5G65230.1 45.133 113 59 2 6 116 4 115 1.27e-26 104
Msa1379390 AT3G27920.1 46.078 102 54 1 16 116 16 117 1.42e-26 102
Msa1379390 AT4G26930.1 48.571 105 53 1 16 119 21 125 1.67e-26 105
Msa1379390 AT5G10280.1 45.133 113 59 2 6 116 4 115 4.46e-26 103
Msa1379390 AT4G00540.2 46.729 107 54 1 13 116 100 206 4.82e-26 104
Msa1379390 AT3G53200.1 46.729 107 54 2 16 120 11 116 5.52e-26 101
Msa1379390 AT3G23250.1 45.098 102 55 1 16 116 14 115 8.64e-26 102
Msa1379390 AT4G00540.1 46.729 107 54 1 13 116 98 204 9.43e-26 104
Msa1379390 AT3G12820.1 46.789 109 55 2 10 116 10 117 1.81e-25 100
Msa1379390 AT2G26960.1 44.167 120 64 2 2 118 6 125 2.18e-25 103
Msa1379390 AT2G26950.1 42.857 112 60 2 12 122 14 122 3.26e-25 102
Msa1379390 AT3G13890.2 40.667 150 78 5 16 157 14 160 3.71e-25 101
Msa1379390 AT2G25230.1 40.741 108 61 1 18 125 28 132 3.90e-25 99.0
Msa1379390 AT4G17785.1 38.816 152 89 3 5 154 4 153 4.96e-25 101
Msa1379390 AT1G74080.1 48.421 95 48 1 16 109 14 108 4.98e-25 100
Msa1379390 AT4G17785.2 44.737 114 60 2 5 116 4 116 5.61e-25 100
Msa1379390 AT1G63910.1 48.113 106 52 2 16 119 14 118 5.66e-25 101
Msa1379390 AT4G01680.3 44.762 105 55 2 16 118 14 117 6.26e-25 98.6
Msa1379390 AT4G38620.1 47.573 103 51 2 16 116 14 115 8.70e-25 99.4
Msa1379390 AT5G52600.1 40.164 122 67 2 16 131 14 135 9.58e-25 97.4
Msa1379390 AT1G56160.1 44.037 109 58 2 10 116 10 117 1.07e-24 99.4
Msa1379390 AT5G54230.1 45.098 102 55 1 16 116 14 115 1.30e-24 99.4
Msa1379390 AT4G01680.1 44.762 105 55 2 16 118 14 117 1.32e-24 99.8
Msa1379390 AT1G22640.1 47.573 103 51 2 16 116 14 115 1.35e-24 98.2
Msa1379390 AT4G05100.1 43.860 114 61 2 5 116 4 116 1.44e-24 99.4
Msa1379390 AT1G74430.1 43.119 109 59 2 10 116 8 115 1.52e-24 98.6
Msa1379390 AT2G32460.1 42.017 119 66 2 2 118 6 123 2.15e-24 100
Msa1379390 AT3G30210.1 44.643 112 59 2 13 122 26 136 2.35e-24 97.8
Msa1379390 AT3G01140.2 44.037 109 58 2 10 116 8 115 2.85e-24 99.0
Msa1379390 AT5G60890.1 41.509 106 61 1 16 120 14 119 3.20e-24 98.2
Msa1379390 AT5G61420.2 43.396 106 59 1 16 120 14 119 3.50e-24 99.0
Msa1379390 AT3G11440.2 43.269 104 58 1 16 118 43 146 3.79e-24 100
Msa1379390 AT3G01140.1 44.037 109 58 2 10 116 51 158 4.10e-24 99.4
Msa1379390 AT3G61250.1 44.954 109 57 2 10 116 8 115 4.37e-24 97.8
Msa1379390 AT5G06100.1 41.818 110 63 1 10 118 28 137 4.38e-24 99.8
Msa1379390 AT3G13890.1 37.975 158 80 5 16 157 14 169 4.80e-24 98.6
Msa1379390 AT1G35515.1 43.137 102 57 1 16 116 14 115 4.86e-24 95.5
Msa1379390 AT3G11440.3 43.269 104 58 1 16 118 43 146 4.88e-24 100
Msa1379390 AT3G11440.4 43.269 104 58 1 16 118 43 146 4.88e-24 100
Msa1379390 AT3G11440.1 43.269 104 58 1 16 118 43 146 4.88e-24 100
Msa1379390 AT5G06100.5 41.818 110 63 1 10 118 28 137 6.26e-24 99.8
Msa1379390 AT5G06100.2 41.818 110 63 1 10 118 28 137 6.26e-24 99.8
Msa1379390 AT5G06100.3 41.818 110 63 1 10 118 28 137 6.26e-24 99.8
Msa1379390 AT5G06100.4 41.818 110 63 1 10 118 28 137 6.26e-24 99.8
Msa1379390 AT1G57560.2 44.660 103 54 2 16 116 14 115 6.82e-24 96.7
Msa1379390 AT1G57560.1 44.660 103 54 2 16 116 14 115 7.14e-24 97.4
Msa1379390 AT5G56110.1 44.954 109 57 2 10 116 8 115 8.21e-24 97.4
Msa1379390 AT4G28110.1 42.593 108 61 1 10 116 8 115 9.88e-24 96.3
Msa1379390 AT1G18710.1 41.284 109 61 2 10 116 8 115 9.93e-24 96.3
Msa1379390 AT3G13540.1 42.991 107 60 1 16 121 25 131 1.35e-23 95.5
Msa1379390 AT5G26660.1 44.762 105 55 2 16 118 14 117 1.40e-23 97.4
Msa1379390 AT5G16770.4 42.593 108 61 1 10 116 8 115 1.63e-23 96.7
Msa1379390 AT5G16770.3 42.593 108 61 1 10 116 8 115 1.63e-23 96.7
Msa1379390 AT1G09540.1 43.925 107 57 2 16 120 14 119 1.65e-23 97.4
Msa1379390 AT2G31180.1 45.631 103 53 2 16 116 14 115 1.70e-23 95.1
Msa1379390 AT3G02940.2 42.593 108 61 1 10 116 8 115 1.72e-23 96.3
Msa1379390 AT5G23000.1 44.037 109 59 2 10 116 8 116 2.03e-23 96.3
Msa1379390 AT2G32460.2 45.714 105 54 2 16 118 8 111 2.06e-23 98.2
Msa1379390 AT5G07700.1 45.098 102 55 1 16 116 14 115 2.11e-23 96.7
Msa1379390 AT5G07700.2 45.098 102 55 1 16 116 14 115 2.11e-23 96.7
Msa1379390 AT5G16770.1 42.593 108 61 1 10 116 8 115 2.37e-23 96.3
Msa1379390 AT5G16770.2 42.593 108 61 1 10 116 8 115 2.37e-23 96.3
Msa1379390 AT1G16490.1 42.241 116 64 2 10 123 10 124 2.45e-23 95.1
Msa1379390 AT3G02940.1 42.593 108 61 1 10 116 8 115 2.71e-23 95.9
Msa1379390 AT3G02940.3 42.593 108 61 1 10 116 8 115 2.71e-23 95.9
Msa1379390 AT5G57620.1 41.284 109 62 2 10 116 8 116 2.85e-23 96.3
Msa1379390 AT2G16720.1 45.631 103 53 2 16 116 14 115 3.10e-23 94.7
Msa1379390 AT4G34990.1 45.631 103 53 2 16 116 14 115 3.42e-23 94.7
Msa1379390 AT5G12870.1 39.496 119 69 2 5 121 9 126 3.83e-23 94.7
Msa1379390 AT4G09460.1 43.689 103 55 2 16 116 14 115 4.20e-23 94.0
Msa1379390 AT3G28470.1 45.545 101 54 1 10 109 8 108 4.23e-23 95.5
Msa1379390 AT5G15310.2 41.667 108 62 1 10 116 8 115 4.75e-23 95.1
Msa1379390 AT5G15310.1 41.667 108 62 1 10 116 8 115 4.94e-23 95.5
Msa1379390 AT5G07690.1 43.564 101 56 1 16 115 14 114 5.58e-23 95.5
Msa1379390 AT5G15310.4 41.667 108 62 1 10 116 8 115 5.98e-23 93.6
Msa1379390 AT4G01680.2 40.171 117 55 2 16 118 14 129 8.08e-23 95.1
Msa1379390 AT1G06180.1 40.517 116 66 2 16 129 14 128 9.76e-23 93.2
Msa1379390 AT4G21440.1 45.631 103 53 2 16 116 14 115 1.10e-22 94.7
Msa1379390 AT5G55020.1 43.810 105 58 1 16 119 28 132 1.16e-22 95.9
Msa1379390 AT1G34670.1 42.593 108 61 1 10 116 8 115 1.25e-22 94.7
Msa1379390 AT5G14340.1 44.762 105 55 2 16 118 26 129 1.41e-22 93.2
Msa1379390 AT3G49690.1 41.284 109 62 2 10 116 8 116 1.61e-22 93.6
Msa1379390 AT1G79180.2 35.616 146 60 2 10 121 10 155 1.85e-22 94.0
Msa1379390 AT3G46130.1 44.037 109 58 2 16 122 11 118 2.66e-22 92.0
Msa1379390 AT5G52260.1 47.573 103 51 2 16 116 14 115 2.98e-22 92.0
Msa1379390 AT5G59780.3 43.119 109 59 2 16 122 10 117 3.22e-22 91.3
Msa1379390 AT1G66370.1 39.474 114 68 1 8 120 2 115 3.66e-22 91.7
Msa1379390 AT3G47600.1 39.655 116 69 1 10 124 8 123 4.28e-22 92.8
Msa1379390 AT5G62470.1 41.346 104 61 0 16 119 14 117 7.37e-22 92.4
Msa1379390 AT5G49330.1 44.118 102 56 1 16 116 14 115 8.66e-22 92.0
Msa1379390 AT5G65790.1 37.600 125 72 3 10 132 8 128 9.57e-22 92.4
Msa1379390 AT4G13480.1 40.476 126 64 3 16 131 8 132 9.94e-22 90.5
Msa1379390 AT5G35550.1 45.263 95 51 1 16 109 16 110 1.08e-21 90.5
Msa1379390 AT3G24310.1 44.762 105 55 2 16 118 20 123 2.12e-21 90.1
Msa1379390 AT5G14750.3 52.941 68 32 0 49 116 18 85 2.13e-21 87.8
Msa1379390 AT3G01530.1 40.000 120 69 2 5 122 16 134 2.48e-21 88.6
Msa1379390 AT3G08500.1 42.308 104 59 1 16 118 32 135 2.72e-21 90.9
Msa1379390 AT2G47190.1 36.090 133 84 1 4 135 10 142 4.99e-21 89.0
Msa1379390 AT3G60460.1 48.958 96 47 2 16 109 13 108 7.24e-21 89.0
Msa1379390 AT1G74650.1 43.137 102 57 1 16 116 14 115 1.24e-20 89.0
Msa1379390 AT2G47460.1 43.137 102 57 1 16 116 14 115 2.02e-20 89.0
Msa1379390 AT3G53200.2 52.778 72 34 0 49 120 12 83 2.08e-20 85.9
Msa1379390 AT4G37780.1 37.615 109 66 2 10 116 8 116 2.47e-20 87.8
Msa1379390 AT1G68320.1 42.453 106 58 2 16 119 21 125 2.72e-20 87.4
Msa1379390 AT5G62470.2 40.952 105 61 1 16 119 14 118 3.68e-20 87.8
Msa1379390 AT5G16600.1 41.071 112 63 2 10 119 8 118 4.94e-20 87.0
Msa1379390 AT1G66380.1 41.667 108 62 1 11 117 5 112 4.94e-20 83.2
Msa1379390 AT2G36890.1 41.284 109 62 2 10 116 8 116 4.98e-20 86.7
Msa1379390 AT3G28910.1 39.815 108 64 1 10 116 8 115 5.32e-20 87.0
Msa1379390 AT1G25340.2 37.607 117 69 1 16 132 20 132 6.46e-20 86.3
Msa1379390 AT2G36890.2 41.284 109 62 2 10 116 49 157 8.14e-20 86.7
Msa1379390 AT1G25340.1 38.655 119 70 2 16 132 20 137 8.52e-20 85.9
Msa1379390 AT4G12350.1 35.156 128 79 3 16 140 14 140 8.80e-20 85.9
Msa1379390 AT1G56650.1 36.957 138 85 2 11 146 5 142 1.03e-19 85.1
Msa1379390 AT1G08810.1 40.741 108 63 1 10 116 8 115 1.14e-19 85.5
Msa1379390 AT1G25340.3 37.288 118 70 1 16 133 20 133 1.20e-19 85.9
Msa1379390 AT5G40430.1 27.041 196 126 4 2 187 40 228 1.46e-19 84.7
Msa1379390 AT4G22680.1 41.284 109 61 2 10 116 8 115 2.02e-19 84.7
Msa1379390 AT1G66230.1 39.823 113 65 2 10 120 8 119 2.45e-19 84.7
Msa1379390 AT5G40350.1 43.158 95 53 1 16 109 19 113 2.85e-19 83.2
Msa1379390 AT1G48000.1 44.211 95 52 1 16 109 34 128 3.16e-19 83.6
Msa1379390 AT3G27810.1 43.158 95 53 1 16 109 22 116 3.88e-19 83.2
Msa1379390 AT2G02820.3 35.484 124 80 0 19 142 33 156 6.16e-19 84.3
Msa1379390 AT2G02820.2 35.484 124 80 0 19 142 33 156 1.01e-18 84.7
Msa1379390 AT2G02820.1 35.484 124 80 0 19 142 33 156 1.05e-18 84.3
Msa1379390 AT3G06490.1 37.795 127 76 2 9 133 14 139 1.20e-18 83.2
Msa1379390 AT3G62610.1 40.196 102 60 1 16 116 14 115 1.55e-18 83.2
Msa1379390 AT5G49620.1 32.558 172 102 3 6 176 18 176 2.71e-18 82.0
Msa1379390 AT1G14350.2 35.075 134 73 2 19 152 28 147 3.17e-18 83.2
Msa1379390 AT1G14350.1 35.075 134 73 2 19 152 28 147 3.17e-18 83.2
Msa1379390 AT3G12820.2 51.471 68 33 0 49 116 2 69 4.46e-18 79.3
Msa1379390 AT3G18100.1 40.426 94 56 0 16 109 546 639 6.60e-18 82.4
Msa1379390 AT5G59780.2 48.649 74 38 0 49 122 23 96 6.64e-18 79.3
Msa1379390 AT3G18100.3 40.426 94 56 0 16 109 498 591 7.80e-18 82.4
Msa1379390 AT3G46130.3 48.649 74 38 0 49 122 13 86 8.85e-18 79.3
Msa1379390 AT3G18100.2 40.426 94 56 0 16 109 333 426 9.01e-18 82.0
Msa1379390 AT3G18100.4 40.426 94 56 0 16 109 385 478 9.06e-18 82.0
Msa1379390 AT3G46130.4 48.649 74 38 0 49 122 23 96 9.66e-18 79.3
Msa1379390 AT1G66390.1 39.815 108 64 1 11 117 5 112 9.70e-18 79.7
Msa1379390 AT5G35550.2 54.839 62 28 0 49 110 53 114 5.83e-17 77.8
Msa1379390 AT5G62320.1 41.818 110 54 3 16 116 15 123 9.15e-17 77.0
Msa1379390 AT5G26660.2 47.143 70 37 0 49 118 17 86 1.87e-16 77.0
Msa1379390 AT3G47600.2 46.053 76 41 0 49 124 42 117 3.03e-16 76.6
Msa1379390 AT2G37630.1 37.273 110 66 1 16 122 4 113 7.61e-16 75.9
Msa1379390 AT5G40350.2 50.820 61 30 0 49 109 8 68 1.63e-15 72.0
Msa1379390 AT3G27810.2 50.820 61 30 0 49 109 7 67 2.64e-15 71.6
Msa1379390 AT5G49620.2 30.108 186 102 4 6 176 18 190 1.13e-14 72.0
Msa1379390 AT1G66380.3 46.835 79 42 0 49 127 11 89 4.20e-14 66.6
Msa1379390 AT5G14750.4 46.552 58 31 0 59 116 1 58 6.28e-14 67.0
Msa1379390 AT5G14750.2 46.552 58 31 0 59 116 1 58 6.28e-14 67.0
Msa1379390 AT1G71030.2 44.615 65 36 0 52 116 5 69 1.22e-13 67.4
Msa1379390 AT1G71030.1 44.615 65 36 0 52 116 19 83 1.38e-13 67.4
Msa1379390 AT1G22640.3 50.000 58 29 0 59 116 1 58 5.23e-13 65.9
Msa1379390 AT3G23250.2 46.552 58 31 0 59 116 1 58 7.48e-13 65.9
Msa1379390 AT1G09770.1 38.824 85 51 1 17 101 8 91 6.29e-12 65.1

Find 50 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCAATTGAATTCCAATTC+TGG 0.202639 tig0020278:-145895 None:intergenic
GGAGCAACCCTCTTGTAATT+TGG 0.255085 tig0020278:-147037 None:intergenic
AAAGGTCTTCTGTTAATTCT+TGG 0.286487 tig0020278:-146569 None:intergenic
AGATACTGTTTATAGAATTA+TGG 0.289199 tig0020278:-145731 None:intergenic
TTTCTTGTGATGCAATTATC+AGG 0.303432 tig0020278:-146938 None:intergenic
AACAATATGGTGCCCAGAAT+TGG 0.308300 tig0020278:+145882 Msa1379390:CDS
TTCCCTTACACAACGAGAAT+TGG 0.308544 tig0020278:+146781 Msa1379390:CDS
CGTCAACTTGTTGAACAATA+TGG 0.317875 tig0020278:+145869 Msa1379390:CDS
CTTCTAGTTCTCTTGCCTCT+TGG 0.331265 tig0020278:+146836 Msa1379390:CDS
GAATCATTGGCATGTTATAA+TGG 0.349760 tig0020278:+146678 Msa1379390:CDS
AAAGGATCTAATATTTATAA+AGG 0.368916 tig0020278:+146940 Msa1379390:CDS
ACTTCTCTTGCCACATAACT+TGG 0.368979 tig0020278:-146741 None:intergenic
AATTGGCAGGGAAAAGTTGT+AGG 0.376520 tig0020278:+146503 Msa1379390:intron
ATCGGATTCACGGGAACAAA+TGG 0.391338 tig0020278:+146608 Msa1379390:CDS
AGTGATGAGAATGCTTGATT+TGG 0.399409 tig0020278:-147013 None:intergenic
AGCAATTGAATTCCAATTCT+GGG 0.403769 tig0020278:-145894 None:intergenic
TATCCAATTCTCGTTGTGTA+AGG 0.414572 tig0020278:-146803 None:intergenic
TCTTCTTCCTCTTCTGTGAA+AGG 0.428456 tig0020278:-146587 None:intergenic
GATAATTGCATCACAAGAAA+AGG 0.455907 tig0020278:+146922 Msa1379390:CDS
AATACATACCTGATCTTCCT+TGG 0.468542 tig0020278:-145925 None:intergenic
CAGGGAAAAGTTGTAGGTTG+AGG 0.483082 tig0020278:+146509 Msa1379390:intron
GTAAGGGAAATTAAGTATAG+AGG 0.483574 tig0020278:-146786 None:intergenic
TTGCGGCTCATCGGATTCAC+GGG 0.496141 tig0020278:+146599 Msa1379390:CDS
AGAGTTGTCCACGTGGTCAC+TGG 0.498220 tig0020278:+145822 Msa1379390:CDS
ATAATGCTGTGAAGAATCAT+TGG 0.498884 tig0020278:+146665 Msa1379390:CDS
CAGAAGACCTTTCACAGAAG+AGG 0.503737 tig0020278:+146561 Msa1379390:CDS
CTTGCGGCTCATCGGATTCA+CGG 0.514410 tig0020278:+146598 Msa1379390:CDS
ACGAGAATTGGATATGAGAA+TGG 0.514578 tig0020278:+146793 Msa1379390:CDS
TCGGATTCACGGGAACAAAT+GGG 0.515800 tig0020278:+146609 Msa1379390:CDS
CAAGAGGCAAGAGAACTAGA+AGG 0.520571 tig0020278:-146854 None:intergenic
GTGACCACGTGGACAACTCT+TGG 0.531230 tig0020278:-145819 None:intergenic
TATAATGGCTAGAAAACAAA+GGG 0.536500 tig0020278:+146693 Msa1379390:CDS
ACAGCATTATCAGTTCTACC+AGG 0.552201 tig0020278:-146671 None:intergenic
AGAGACTACTTGCGGCTCAT+CGG 0.552562 tig0020278:+146590 Msa1379390:CDS
GGAAAAGTTGTAGGTTGAGG+TGG 0.578152 tig0020278:+146512 Msa1379390:CDS
ATCCAATTCTCGTTGTGTAA+GGG 0.578227 tig0020278:-146802 None:intergenic
CATCACTTCCAAATTACAAG+AGG 0.582216 tig0020278:+147010 Msa1379390:CDS
AGGGAACAATCCAAGTTATG+TGG 0.586173 tig0020278:+146712 Msa1379390:CDS
GCCTCTGCAACTACCACACA+TGG 0.588217 tig0020278:+145769 Msa1379390:exon
TCCATGTGTGGTAGTTGCAG+AGG 0.607994 tig0020278:-145770 None:intergenic
ATCACTTCCAAATTACAAGA+GGG 0.621174 tig0020278:+147011 Msa1379390:CDS
TTATAATGGCTAGAAAACAA+AGG 0.628974 tig0020278:+146692 Msa1379390:CDS
CAGCATTATCAGTTCTACCA+GGG 0.636613 tig0020278:-146670 None:intergenic
GGTAGTTGCAGAGGCTGATG+AGG 0.643431 tig0020278:-145761 None:intergenic
CATAGAAGCAAAATTCCAAG+AGG 0.652007 tig0020278:-146870 None:intergenic
GGAAGAAGAGAGACTACTTG+CGG 0.656523 tig0020278:+146582 Msa1379390:CDS
GAAGAAGAATCCTCCATGTG+TGG 0.666109 tig0020278:-145782 None:intergenic
GCGGGTCGCCAGTGACCACG+TGG 0.707521 tig0020278:-145830 None:intergenic
GATACCAAGAGTTGTCCACG+TGG 0.762573 tig0020278:+145815 Msa1379390:CDS
TCTGCAACTACCACACATGG+AGG 0.765362 tig0020278:+145772 Msa1379390:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTCCTTTTAAT+TGG + tig0020278:146486-146505 Msa1379390:intron 10.0%
!!! TTTTTTTTTTTCCTTTTAAT+TGG + tig0020278:146486-146505 Msa1379390:intron 10.0%
!! ATGAATTTGAAAATTAAACA+AGG - tig0020278:145999-146018 None:intergenic 15.0%
!!! TCAACCAATAAAATTTTAAT+TGG + tig0020278:146374-146393 Msa1379390:intron 15.0%
!!! CTTACCAATTAAAATTTTAT+TGG - tig0020278:146381-146400 None:intergenic 15.0%
!! AAAGGATCTAATATTTATAA+AGG + tig0020278:146940-146959 Msa1379390:CDS 15.0%
!! ATGAATTTGAAAATTAAACA+AGG - tig0020278:145999-146018 None:intergenic 15.0%
!!! TCAACCAATAAAATTTTAAT+TGG + tig0020278:146374-146393 Msa1379390:intron 15.0%
!!! CTTACCAATTAAAATTTTAT+TGG - tig0020278:146381-146400 None:intergenic 15.0%
!! AAAGGATCTAATATTTATAA+AGG + tig0020278:146940-146959 Msa1379390:CDS 15.0%
!! AGATACTGTTTATAGAATTA+TGG - tig0020278:145734-145753 None:intergenic 20.0%
!! AATTTGAAAATTAAACAAGG+AGG - tig0020278:145996-146015 None:intergenic 20.0%
!! TTTCAAATTCATAGTGAAAT+TGG + tig0020278:146007-146026 Msa1379390:intron 20.0%
!! TTCAAATTCATAGTGAAATT+GGG + tig0020278:146008-146027 Msa1379390:intron 20.0%
!!! TTTGGAATTTTTGGTTATTT+TGG + tig0020278:146282-146301 Msa1379390:intron 20.0%
!! TACATGAGATAATTAATAGA+TGG - tig0020278:146425-146444 None:intergenic 20.0%
!! AGATACTGTTTATAGAATTA+TGG - tig0020278:145734-145753 None:intergenic 20.0%
!! AATTTGAAAATTAAACAAGG+AGG - tig0020278:145996-146015 None:intergenic 20.0%
!! TTTCAAATTCATAGTGAAAT+TGG + tig0020278:146007-146026 Msa1379390:intron 20.0%
!! TTCAAATTCATAGTGAAATT+GGG + tig0020278:146008-146027 Msa1379390:intron 20.0%
!!! TTTGGAATTTTTGGTTATTT+TGG + tig0020278:146282-146301 Msa1379390:intron 20.0%
!! TACATGAGATAATTAATAGA+TGG - tig0020278:146425-146444 None:intergenic 20.0%
!!! GTTATTTTGGTTTTCTCTAT+TGG + tig0020278:146295-146314 Msa1379390:intron 25.0%
!!! TTTTTTTCCTTTTAATTGGC+AGG + tig0020278:146490-146509 Msa1379390:intron 25.0%
!!! TTTTTTCCTTTTAATTGGCA+GGG + tig0020278:146491-146510 Msa1379390:intron 25.0%
! TTATAATGGCTAGAAAACAA+AGG + tig0020278:146692-146711 Msa1379390:CDS 25.0%
! TATAATGGCTAGAAAACAAA+GGG + tig0020278:146693-146712 Msa1379390:CDS 25.0%
!!! GTTATTTTGGTTTTCTCTAT+TGG + tig0020278:146295-146314 Msa1379390:intron 25.0%
!!! TTTTTTTCCTTTTAATTGGC+AGG + tig0020278:146490-146509 Msa1379390:intron 25.0%
!!! TTTTTTCCTTTTAATTGGCA+GGG + tig0020278:146491-146510 Msa1379390:intron 25.0%
! TTATAATGGCTAGAAAACAA+AGG + tig0020278:146692-146711 Msa1379390:CDS 25.0%
! TATAATGGCTAGAAAACAAA+GGG + tig0020278:146693-146712 Msa1379390:CDS 25.0%
AGCAATTGAATTCCAATTCT+GGG - tig0020278:145897-145916 None:intergenic 30.0%
TGATATCCTTCTTCTTAACA+TGG - tig0020278:146086-146105 None:intergenic 30.0%
ATGTTAAGAAGAAGGATATC+AGG + tig0020278:146085-146104 Msa1379390:intron 30.0%
TGGTATTTATGTTAGTGAGA+AGG + tig0020278:146119-146138 Msa1379390:intron 30.0%
GGTATTTATGTTAGTGAGAA+GGG + tig0020278:146120-146139 Msa1379390:intron 30.0%
! ATTCAAGTTTCTGTTGTTCT+TGG + tig0020278:146204-146223 Msa1379390:intron 30.0%
! TTACATTTGCTTGTTGAGTT+TGG + tig0020278:146264-146283 Msa1379390:intron 30.0%
!! CTTGTTGAGTTTGGAATTTT+TGG + tig0020278:146273-146292 Msa1379390:intron 30.0%
AAAGGTCTTCTGTTAATTCT+TGG - tig0020278:146553-146572 None:intergenic 30.0%
ATAATGCTGTGAAGAATCAT+TGG + tig0020278:146665-146684 Msa1379390:CDS 30.0%
GAATCATTGGCATGTTATAA+TGG + tig0020278:146678-146697 Msa1379390:CDS 30.0%
GTAAGGGAAATTAAGTATAG+AGG - tig0020278:146770-146789 None:intergenic 30.0%
TTTCTTGTGATGCAATTATC+AGG - tig0020278:146922-146941 None:intergenic 30.0%
GATAATTGCATCACAAGAAA+AGG + tig0020278:146922-146941 Msa1379390:CDS 30.0%
ATCACTTCCAAATTACAAGA+GGG + tig0020278:147011-147030 Msa1379390:CDS 30.0%
AGCAATTGAATTCCAATTCT+GGG - tig0020278:145897-145916 None:intergenic 30.0%
TGATATCCTTCTTCTTAACA+TGG - tig0020278:146086-146105 None:intergenic 30.0%
ATGTTAAGAAGAAGGATATC+AGG + tig0020278:146085-146104 Msa1379390:intron 30.0%
TGGTATTTATGTTAGTGAGA+AGG + tig0020278:146119-146138 Msa1379390:intron 30.0%
GGTATTTATGTTAGTGAGAA+GGG + tig0020278:146120-146139 Msa1379390:intron 30.0%
! ATTCAAGTTTCTGTTGTTCT+TGG + tig0020278:146204-146223 Msa1379390:intron 30.0%
! TTACATTTGCTTGTTGAGTT+TGG + tig0020278:146264-146283 Msa1379390:intron 30.0%
!! CTTGTTGAGTTTGGAATTTT+TGG + tig0020278:146273-146292 Msa1379390:intron 30.0%
AAAGGTCTTCTGTTAATTCT+TGG - tig0020278:146553-146572 None:intergenic 30.0%
ATAATGCTGTGAAGAATCAT+TGG + tig0020278:146665-146684 Msa1379390:CDS 30.0%
GAATCATTGGCATGTTATAA+TGG + tig0020278:146678-146697 Msa1379390:CDS 30.0%
GTAAGGGAAATTAAGTATAG+AGG - tig0020278:146770-146789 None:intergenic 30.0%
TTTCTTGTGATGCAATTATC+AGG - tig0020278:146922-146941 None:intergenic 30.0%
GATAATTGCATCACAAGAAA+AGG + tig0020278:146922-146941 Msa1379390:CDS 30.0%
ATCACTTCCAAATTACAAGA+GGG + tig0020278:147011-147030 Msa1379390:CDS 30.0%
! ACGAAGTTTTTCATCTTCAG+CGG - tig0020278:145852-145871 None:intergenic 35.0%
!! CGTCAACTTGTTGAACAATA+TGG + tig0020278:145869-145888 Msa1379390:CDS 35.0%
CAGCAATTGAATTCCAATTC+TGG - tig0020278:145898-145917 None:intergenic 35.0%
TCAATTGCTGAAAAACTCCA+AGG + tig0020278:145908-145927 Msa1379390:CDS 35.0%
AATACATACCTGATCTTCCT+TGG - tig0020278:145928-145947 None:intergenic 35.0%
TCTTCTTAACATGGCATTTC+TGG - tig0020278:146077-146096 None:intergenic 35.0%
GAAATGCCATGTTAAGAAGA+AGG + tig0020278:146077-146096 Msa1379390:intron 35.0%
GATATCAGGAAGTTTCTTGA+TGG + tig0020278:146099-146118 Msa1379390:intron 35.0%
TTATGTTAGTGAGAAGGGAT+CGG + tig0020278:146125-146144 Msa1379390:intron 35.0%
AGTTTCTGTTGTTCTTGGAT+TGG + tig0020278:146209-146228 Msa1379390:intron 35.0%
!!! TTGGATTGGTAACTGTTTTG+TGG + tig0020278:146223-146242 Msa1379390:intron 35.0%
! ACTTTTCCCTGCCAATTAAA+AGG - tig0020278:146500-146519 None:intergenic 35.0%
ATCCAATTCTCGTTGTGTAA+GGG - tig0020278:146786-146805 None:intergenic 35.0%
TATCCAATTCTCGTTGTGTA+AGG - tig0020278:146787-146806 None:intergenic 35.0%
ACGAGAATTGGATATGAGAA+TGG + tig0020278:146793-146812 Msa1379390:CDS 35.0%
CATAGAAGCAAAATTCCAAG+AGG - tig0020278:146854-146873 None:intergenic 35.0%
AGTGATGAGAATGCTTGATT+TGG - tig0020278:146997-147016 None:intergenic 35.0%
CATCACTTCCAAATTACAAG+AGG + tig0020278:147010-147029 Msa1379390:CDS 35.0%
! ACGAAGTTTTTCATCTTCAG+CGG - tig0020278:145852-145871 None:intergenic 35.0%
!! CGTCAACTTGTTGAACAATA+TGG + tig0020278:145869-145888 Msa1379390:CDS 35.0%
CAGCAATTGAATTCCAATTC+TGG - tig0020278:145898-145917 None:intergenic 35.0%
TCAATTGCTGAAAAACTCCA+AGG + tig0020278:145908-145927 Msa1379390:CDS 35.0%
AATACATACCTGATCTTCCT+TGG - tig0020278:145928-145947 None:intergenic 35.0%
TCTTCTTAACATGGCATTTC+TGG - tig0020278:146077-146096 None:intergenic 35.0%
GAAATGCCATGTTAAGAAGA+AGG + tig0020278:146077-146096 Msa1379390:intron 35.0%
GATATCAGGAAGTTTCTTGA+TGG + tig0020278:146099-146118 Msa1379390:intron 35.0%
TTATGTTAGTGAGAAGGGAT+CGG + tig0020278:146125-146144 Msa1379390:intron 35.0%
AGTTTCTGTTGTTCTTGGAT+TGG + tig0020278:146209-146228 Msa1379390:intron 35.0%
!!! TTGGATTGGTAACTGTTTTG+TGG + tig0020278:146223-146242 Msa1379390:intron 35.0%
! ACTTTTCCCTGCCAATTAAA+AGG - tig0020278:146500-146519 None:intergenic 35.0%
ATCCAATTCTCGTTGTGTAA+GGG - tig0020278:146786-146805 None:intergenic 35.0%
TATCCAATTCTCGTTGTGTA+AGG - tig0020278:146787-146806 None:intergenic 35.0%
ACGAGAATTGGATATGAGAA+TGG + tig0020278:146793-146812 Msa1379390:CDS 35.0%
CATAGAAGCAAAATTCCAAG+AGG - tig0020278:146854-146873 None:intergenic 35.0%
AGTGATGAGAATGCTTGATT+TGG - tig0020278:146997-147016 None:intergenic 35.0%
CATCACTTCCAAATTACAAG+AGG + tig0020278:147010-147029 Msa1379390:CDS 35.0%
! CGAAGTTTTTCATCTTCAGC+GGG - tig0020278:145851-145870 None:intergenic 40.0%
AACAATATGGTGCCCAGAAT+TGG + tig0020278:145882-145901 Msa1379390:CDS 40.0%
GAAAAACTCCAAGGAAGATC+AGG + tig0020278:145917-145936 Msa1379390:CDS 40.0%
AATTGGCAGGGAAAAGTTGT+AGG + tig0020278:146503-146522 Msa1379390:intron 40.0%
TCTTCTTCCTCTTCTGTGAA+AGG - tig0020278:146571-146590 None:intergenic 40.0%
! CTAATAGCAAGACTTTTCCC+TGG + tig0020278:146634-146653 Msa1379390:CDS 40.0%
CAGCATTATCAGTTCTACCA+GGG - tig0020278:146654-146673 None:intergenic 40.0%
ACAGCATTATCAGTTCTACC+AGG - tig0020278:146655-146674 None:intergenic 40.0%
AGGGAACAATCCAAGTTATG+TGG + tig0020278:146712-146731 Msa1379390:CDS 40.0%
ACTTCTCTTGCCACATAACT+TGG - tig0020278:146725-146744 None:intergenic 40.0%
TTCCCTTACACAACGAGAAT+TGG + tig0020278:146781-146800 Msa1379390:CDS 40.0%
! CGAAGTTTTTCATCTTCAGC+GGG - tig0020278:145851-145870 None:intergenic 40.0%
AACAATATGGTGCCCAGAAT+TGG + tig0020278:145882-145901 Msa1379390:CDS 40.0%
GAAAAACTCCAAGGAAGATC+AGG + tig0020278:145917-145936 Msa1379390:CDS 40.0%
AATTGGCAGGGAAAAGTTGT+AGG + tig0020278:146503-146522 Msa1379390:intron 40.0%
TCTTCTTCCTCTTCTGTGAA+AGG - tig0020278:146571-146590 None:intergenic 40.0%
! CTAATAGCAAGACTTTTCCC+TGG + tig0020278:146634-146653 Msa1379390:CDS 40.0%
CAGCATTATCAGTTCTACCA+GGG - tig0020278:146654-146673 None:intergenic 40.0%
ACAGCATTATCAGTTCTACC+AGG - tig0020278:146655-146674 None:intergenic 40.0%
AGGGAACAATCCAAGTTATG+TGG + tig0020278:146712-146731 Msa1379390:CDS 40.0%
ACTTCTCTTGCCACATAACT+TGG - tig0020278:146725-146744 None:intergenic 40.0%
TTCCCTTACACAACGAGAAT+TGG + tig0020278:146781-146800 Msa1379390:CDS 40.0%
GAAGAAGAATCCTCCATGTG+TGG - tig0020278:145785-145804 None:intergenic 45.0%
CAGGGAAAAGTTGTAGGTTG+AGG + tig0020278:146509-146528 Msa1379390:intron 45.0%
! GGAAAAGTTGTAGGTTGAGG+TGG + tig0020278:146512-146531 Msa1379390:CDS 45.0%
CAGAAGACCTTTCACAGAAG+AGG + tig0020278:146561-146580 Msa1379390:CDS 45.0%
GGAAGAAGAGAGACTACTTG+CGG + tig0020278:146582-146601 Msa1379390:CDS 45.0%
ATCGGATTCACGGGAACAAA+TGG + tig0020278:146608-146627 Msa1379390:CDS 45.0%
TCGGATTCACGGGAACAAAT+GGG + tig0020278:146609-146628 Msa1379390:CDS 45.0%
CAAGAGGCAAGAGAACTAGA+AGG - tig0020278:146838-146857 None:intergenic 45.0%
!! CTTCTAGTTCTCTTGCCTCT+TGG + tig0020278:146836-146855 Msa1379390:CDS 45.0%
GGAGCAACCCTCTTGTAATT+TGG - tig0020278:147021-147040 None:intergenic 45.0%
GAAGAAGAATCCTCCATGTG+TGG - tig0020278:145785-145804 None:intergenic 45.0%
CAGGGAAAAGTTGTAGGTTG+AGG + tig0020278:146509-146528 Msa1379390:intron 45.0%
! GGAAAAGTTGTAGGTTGAGG+TGG + tig0020278:146512-146531 Msa1379390:CDS 45.0%
CAGAAGACCTTTCACAGAAG+AGG + tig0020278:146561-146580 Msa1379390:CDS 45.0%
GGAAGAAGAGAGACTACTTG+CGG + tig0020278:146582-146601 Msa1379390:CDS 45.0%
ATCGGATTCACGGGAACAAA+TGG + tig0020278:146608-146627 Msa1379390:CDS 45.0%
TCGGATTCACGGGAACAAAT+GGG + tig0020278:146609-146628 Msa1379390:CDS 45.0%
CAAGAGGCAAGAGAACTAGA+AGG - tig0020278:146838-146857 None:intergenic 45.0%
!! CTTCTAGTTCTCTTGCCTCT+TGG + tig0020278:146836-146855 Msa1379390:CDS 45.0%
GGAGCAACCCTCTTGTAATT+TGG - tig0020278:147021-147040 None:intergenic 45.0%
TCCATGTGTGGTAGTTGCAG+AGG - tig0020278:145773-145792 None:intergenic 50.0%
TCTGCAACTACCACACATGG+AGG + tig0020278:145772-145791 Msa1379390:exon 50.0%
GATACCAAGAGTTGTCCACG+TGG + tig0020278:145815-145834 Msa1379390:CDS 50.0%
TGTTAGTGAGAAGGGATCGG+TGG + tig0020278:146128-146147 Msa1379390:intron 50.0%
AGAGACTACTTGCGGCTCAT+CGG + tig0020278:146590-146609 Msa1379390:CDS 50.0%
TCCATGTGTGGTAGTTGCAG+AGG - tig0020278:145773-145792 None:intergenic 50.0%
TCTGCAACTACCACACATGG+AGG + tig0020278:145772-145791 Msa1379390:exon 50.0%
GATACCAAGAGTTGTCCACG+TGG + tig0020278:145815-145834 Msa1379390:CDS 50.0%
TGTTAGTGAGAAGGGATCGG+TGG + tig0020278:146128-146147 Msa1379390:intron 50.0%
AGAGACTACTTGCGGCTCAT+CGG + tig0020278:146590-146609 Msa1379390:CDS 50.0%
GGTAGTTGCAGAGGCTGATG+AGG - tig0020278:145764-145783 None:intergenic 55.0%
GCCTCTGCAACTACCACACA+TGG + tig0020278:145769-145788 Msa1379390:exon 55.0%
GTGACCACGTGGACAACTCT+TGG - tig0020278:145822-145841 None:intergenic 55.0%
AGAGTTGTCCACGTGGTCAC+TGG + tig0020278:145822-145841 Msa1379390:CDS 55.0%
CTTGCGGCTCATCGGATTCA+CGG + tig0020278:146598-146617 Msa1379390:CDS 55.0%
TTGCGGCTCATCGGATTCAC+GGG + tig0020278:146599-146618 Msa1379390:CDS 55.0%
GGTAGTTGCAGAGGCTGATG+AGG - tig0020278:145764-145783 None:intergenic 55.0%
GCCTCTGCAACTACCACACA+TGG + tig0020278:145769-145788 Msa1379390:exon 55.0%
GTGACCACGTGGACAACTCT+TGG - tig0020278:145822-145841 None:intergenic 55.0%
AGAGTTGTCCACGTGGTCAC+TGG + tig0020278:145822-145841 Msa1379390:CDS 55.0%
CTTGCGGCTCATCGGATTCA+CGG + tig0020278:146598-146617 Msa1379390:CDS 55.0%
TTGCGGCTCATCGGATTCAC+GGG + tig0020278:146599-146618 Msa1379390:CDS 55.0%
GCGGGTCGCCAGTGACCACG+TGG - tig0020278:145833-145852 None:intergenic 75.0%
GCGGGTCGCCAGTGACCACG+TGG - tig0020278:145833-145852 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0020278 gene 145718 147047 145718 ID=Msa1379390;Name=Msa1379390
tig0020278 mRNA 145718 147047 145718 ID=Msa1379390-mRNA-1;Parent=Msa1379390;Name=Msa1379390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=70|1|0.5|1|1|1|2|0|229
tig0020278 exon 145718 145938 145718 ID=Msa1379390-mRNA-1:exon:6463;Parent=Msa1379390-mRNA-1
tig0020278 exon 146512 147047 146512 ID=Msa1379390-mRNA-1:exon:6464;Parent=Msa1379390-mRNA-1
tig0020278 five_prime_UTR 145718 145787 145718 ID=Msa1379390-mRNA-1:five_prime_utr;Parent=Msa1379390-mRNA-1
tig0020278 CDS 145788 145938 145788 ID=Msa1379390-mRNA-1:cds;Parent=Msa1379390-mRNA-1
tig0020278 CDS 146512 147047 146512 ID=Msa1379390-mRNA-1:cds;Parent=Msa1379390-mRNA-1
Gene Sequence

>Msa1379390

ATGGAGGATTCTTCTTCTGCAGCTGAAGATACCAAGAGTTGTCCACGTGGTCACTGGCGACCCGCTGAAGATGAAAAACTTCGTCAACTTGTTGAACAATATGGTGCCCAGAATTGGAATTCAATTGCTGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGGTGGTTCAATCAGCTAGATCCAAGAATTAACAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGACTACTTGCGGCTCATCGGATTCACGGGAACAAATGGGCACTAATAGCAAGACTTTTCCCTGGTAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCTAGAAAACAAAGGGAACAATCCAAGTTATGTGGCAAGAGAAGTTTTCAAGAAGTTTTTTCTAACTCCTCTATACTTAATTTCCCTTACACAACGAGAATTGGATATGAGAATGGAAGATTCTATGATAATACACCTTCTAGTTCTCTTGCCTCTTGGAATTTTGCTTCTATGTCAACAACAACAACAGCAAACACTACTACTGCTGCTACTATTTTACCTGATAATTGCATCACAAGAAAAGGATCTAATATTTATAAAGGCTCAGATAGATCATTTCTCTACAGAATTTGTCCAAATCAAGCATTCTCATCACTTCCAAATTACAAGAGGGTTGCTCCAAATGTT
Protein sequence

>Msa1379390

MEDSSSAAEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQEVFSNSSILNFPYTTRIGYENGRFYDNTPSSSLASWNFASMSTTTTANTTTAATILPDNCITRKGSNIYKGSDRSFLYRICPNQAFSSLPNYKRVAPNV