AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459870 MtrunA17_Chr3g0125801 96.500 200 5 1 1 200 1 198 1.44e-145 406
Msa1459870 MtrunA17_Chr4g0042501 62.428 173 56 4 11 175 100 271 5.26e-68 213
Msa1459870 MtrunA17_Chr5g0417621 77.600 125 27 1 11 134 129 253 2.84e-66 209
Msa1459870 MtrunA17_Chr6g0480581 63.522 159 54 3 14 168 2 160 3.08e-66 203
Msa1459870 MtrunA17_Chr7g0254261 54.737 190 75 3 1 187 71 252 4.47e-61 194
Msa1459870 MtrunA17_Chr6g0460671 70.909 110 32 0 10 119 93 202 4.89e-56 181
Msa1459870 MtrunA17_Chr6g0460661 51.007 149 70 1 16 164 16 161 3.14e-50 160
Msa1459870 MtrunA17_Chr4g0008551 62.376 101 38 0 16 116 38 138 3.10e-43 147
Msa1459870 MtrunA17_Chr6g0454921 51.695 118 50 1 16 133 15 125 2.22e-38 131
Msa1459870 MtrunA17_Chr5g0401731 56.436 101 44 0 16 116 15 115 3.50e-38 134
Msa1459870 MtrunA17_Chr3g0133601 57.426 101 43 0 16 116 37 137 5.20e-38 130
Msa1459870 MtrunA17_Chr5g0437321 51.402 107 52 0 4 110 7 113 8.96e-37 129
Msa1459870 MtrunA17_Chr4g0053431 55.446 101 45 0 16 116 5 105 1.45e-36 128
Msa1459870 MtrunA17_Chr7g0238631 53.465 101 47 0 16 116 113 213 1.12e-32 123
Msa1459870 MtrunA17_Chr5g0429661 39.759 166 86 2 6 165 112 269 1.06e-31 117
Msa1459870 MtrunA17_Chr3g0139671 49.505 101 51 0 16 116 85 185 3.64e-31 119
Msa1459870 MtrunA17_Chr1g0157731 49.505 101 51 0 16 116 91 191 5.87e-31 119
Msa1459870 MtrunA17_Chr4g0058991 39.535 172 90 3 16 187 209 366 2.06e-29 113
Msa1459870 MtrunA17_Chr1g0203441 43.590 117 63 2 16 130 15 130 4.08e-28 106
Msa1459870 MtrunA17_Chr3g0117511 47.368 114 57 1 16 129 183 293 6.84e-28 108
Msa1459870 MtrunA17_Chr5g0397841 52.174 92 44 0 19 110 113 204 1.40e-27 108
Msa1459870 MtrunA17_Chr6g0470971 38.346 133 79 2 16 146 16 147 1.64e-27 105
Msa1459870 MtrunA17_Chr2g0311221 50.485 103 48 2 10 110 10 111 2.30e-27 105
Msa1459870 MtrunA17_Chr7g0228531 48.673 113 56 2 16 128 220 330 2.84e-27 107
Msa1459870 MtrunA17_Chr4g0022901 49.515 103 49 2 16 116 15 116 4.10e-27 103
Msa1459870 MtrunA17_Chr4g0055981 38.400 125 76 1 16 139 57 181 6.93e-27 102
Msa1459870 MtrunA17_Chr2g0309911 49.515 103 49 2 16 116 13 114 7.97e-27 103
Msa1459870 MtrunA17_Chr2g0323351 45.370 108 56 2 10 115 8 114 8.60e-27 102
Msa1459870 MtrunA17_Chr4g0022911 40.268 149 76 4 16 152 15 162 1.10e-26 103
Msa1459870 MtrunA17_Chr3g0115821 46.789 109 55 2 10 116 8 115 1.38e-26 103
Msa1459870 MtrunA17_Chr1g0187761 43.966 116 62 2 16 129 14 128 1.48e-26 102
Msa1459870 MtrunA17_Chr3g0103281 47.573 103 51 2 16 116 14 115 2.17e-26 103
Msa1459870 MtrunA17_Chr5g0417821 45.098 102 55 1 16 116 9 110 2.78e-26 102
Msa1459870 MtrunA17_Chr4g0022931 48.544 103 50 2 16 116 15 116 3.44e-26 101
Msa1459870 MtrunA17_Chr8g0360111 45.794 107 57 1 9 114 20 126 4.27e-26 100
Msa1459870 MtrunA17_Chr7g0274581 46.078 102 54 1 16 116 14 115 4.44e-26 99.8
Msa1459870 MtrunA17_Chr4g0058631 43.925 107 57 2 16 120 14 119 4.49e-26 102
Msa1459870 MtrunA17_Chr7g0270891 44.860 107 56 2 16 120 14 119 5.20e-26 102
Msa1459870 MtrunA17_Chr4g0022881 44.660 103 54 2 10 110 8 109 6.49e-26 99.8
Msa1459870 MtrunA17_Chr8g0387421 46.729 107 54 2 16 120 14 119 1.26e-25 100
Msa1459870 MtrunA17_Chr8g0342541 42.975 121 66 2 16 134 14 133 1.37e-25 101
Msa1459870 MtrunA17_Chr5g0397231 52.083 96 43 2 16 109 14 108 1.54e-25 100
Msa1459870 MtrunA17_Chr1g0193801 43.925 107 57 2 16 120 14 119 3.09e-25 100
Msa1459870 MtrunA17_Chr1g0193371 43.396 106 57 2 16 119 14 118 3.65e-25 100
Msa1459870 MtrunA17_Chr5g0434911 41.667 108 62 1 11 117 18 125 4.09e-25 98.6
Msa1459870 MtrunA17_Chr3g0117091 44.860 107 56 2 16 120 14 119 4.13e-25 100
Msa1459870 MtrunA17_Chr1g0211161 43.925 107 57 2 16 120 15 120 4.60e-25 97.4
Msa1459870 MtrunA17_Chr1g0154031 43.307 127 64 3 16 140 78 198 5.20e-25 100
Msa1459870 MtrunA17_Chr5g0441131 41.406 128 65 5 4 129 2 121 5.42e-25 96.3
Msa1459870 MtrunA17_Chr5g0435101 45.872 109 56 2 10 116 7 114 6.05e-25 96.7
Msa1459870 MtrunA17_Chr5g0410961 43.519 108 60 1 10 116 8 115 6.90e-25 99.4
Msa1459870 MtrunA17_Chr4g0022891 39.844 128 65 4 10 134 8 126 8.53e-25 97.1
Msa1459870 MtrunA17_Chr1g0203411 45.283 106 55 2 16 119 14 118 1.08e-24 97.8
Msa1459870 MtrunA17_Chr5g0434831 41.284 109 63 1 9 116 2 110 1.11e-24 95.5
Msa1459870 MtrunA17_Chr8g0385321 45.098 102 55 1 16 116 14 115 1.34e-24 98.2
Msa1459870 MtrunA17_Chr2g0330041 48.544 103 50 2 16 116 14 115 1.45e-24 99.4
Msa1459870 MtrunA17_Chr8g0342521 35.955 178 93 5 16 178 14 185 1.63e-24 98.6
Msa1459870 MtrunA17_Chr1g0167691 44.860 107 56 2 12 116 10 115 2.07e-24 96.3
Msa1459870 MtrunA17_Chr3g0099131 43.810 105 58 1 16 119 43 147 2.21e-24 99.8
Msa1459870 MtrunA17_Chr4g0037141 46.602 103 52 2 16 116 14 115 2.42e-24 97.1
Msa1459870 MtrunA17_Chr5g0395281 42.478 113 62 2 6 116 4 115 2.46e-24 97.4
Msa1459870 MtrunA17_Chr8g0342481 39.241 158 77 4 16 154 14 171 2.74e-24 98.6
Msa1459870 MtrunA17_Chr5g0434931 40.909 110 64 1 9 117 30 139 2.77e-24 96.7
Msa1459870 MtrunA17_Chr5g0434841 42.202 109 62 1 9 116 15 123 2.99e-24 97.4
Msa1459870 MtrunA17_Chr7g0228481 50.000 96 47 1 16 111 220 314 3.28e-24 98.6
Msa1459870 MtrunA17_Chr3g0131121 45.631 103 53 2 16 116 14 115 3.30e-24 96.7
Msa1459870 MtrunA17_Chr7g0220341 40.541 111 63 1 9 116 20 130 3.50e-24 96.3
Msa1459870 MtrunA17_Chr1g0180391 41.176 136 75 4 7 138 12 146 4.36e-24 95.1
Msa1459870 MtrunA17_Chr7g0271241 47.423 97 48 2 16 110 14 109 4.55e-24 97.8
Msa1459870 MtrunA17_Chr7g0228401 51.190 84 41 0 27 110 290 373 4.56e-24 98.6
Msa1459870 MtrunA17_Chr1g0192411 39.669 121 68 2 4 123 2 118 4.96e-24 97.8
Msa1459870 MtrunA17_Chr2g0281071 42.105 114 63 2 5 116 4 116 6.01e-24 96.7
Msa1459870 MtrunA17_Chr5g0400821 40.833 120 63 3 10 127 8 121 6.41e-24 96.3
Msa1459870 MtrunA17_Chr8g0346561 40.909 110 64 1 16 124 14 123 7.62e-24 95.9
Msa1459870 MtrunA17_Chr3g0135311 40.367 109 63 2 10 116 8 116 9.86e-24 96.3
Msa1459870 MtrunA17_Chr6g0452271 42.593 108 61 1 10 116 8 115 1.00e-23 96.3
Msa1459870 MtrunA17_Chr4g0039971 44.037 109 58 2 10 116 9 116 1.09e-23 96.3
Msa1459870 MtrunA17_Chr7g0228991 42.157 102 58 1 16 116 31 132 1.09e-23 95.1
Msa1459870 MtrunA17_Chr8g0354661 41.129 124 70 2 16 137 39 161 1.12e-23 97.8
Msa1459870 MtrunA17_Chr8g0349261 47.115 104 51 3 16 116 15 117 1.58e-23 94.7
Msa1459870 MtrunA17_Chr7g0228891 44.144 111 59 2 10 118 8 117 1.66e-23 94.4
Msa1459870 MtrunA17_Chr4g0032401 42.593 108 59 2 16 121 19 125 1.80e-23 95.5
Msa1459870 MtrunA17_Chr4g0048511 46.667 105 53 2 7 109 6 109 2.13e-23 95.5
Msa1459870 MtrunA17_Chr4g0028311 42.202 109 61 2 10 116 8 116 3.00e-23 94.7
Msa1459870 MtrunA17_Chr4g0030881 45.217 115 54 3 16 122 9 122 3.30e-23 93.2
Msa1459870 MtrunA17_Chr7g0275911 40.367 109 64 1 16 123 14 122 3.40e-23 93.2
Msa1459870 MtrunA17_Chr5g0440781 43.750 112 53 5 10 118 11 115 4.58e-23 91.3
Msa1459870 MtrunA17_Chr1g0152011 40.367 109 63 2 10 116 8 116 4.86e-23 94.4
Msa1459870 MtrunA17_Chr8g0334881 47.619 105 53 2 7 109 3 107 7.44e-23 93.6
Msa1459870 MtrunA17_Chr3g0121241 41.509 106 61 1 16 120 44 149 8.48e-23 93.2
Msa1459870 MtrunA17_Chr8g0343831 40.000 110 65 1 12 120 6 115 1.02e-22 92.0
Msa1459870 MtrunA17_Chr1g0194301 37.209 129 78 2 7 133 26 153 1.05e-22 92.4
Msa1459870 MtrunA17_Chr5g0440761 42.342 111 56 4 10 118 11 115 1.10e-22 92.0
Msa1459870 MtrunA17_Chr7g0217221 39.640 111 66 1 10 119 8 118 1.13e-22 92.0
Msa1459870 MtrunA17_Chr5g0441141 42.342 111 56 4 10 118 11 115 1.21e-22 92.0
Msa1459870 MtrunA17_Chr4g0070641 39.048 105 63 1 16 119 14 118 1.36e-22 89.7
Msa1459870 MtrunA17_Chr2g0328771 41.121 107 62 1 16 121 22 128 1.51e-22 92.8
Msa1459870 MtrunA17_Chr7g0240821 45.000 100 52 2 19 116 6 104 1.55e-22 90.9
Msa1459870 MtrunA17_Chr4g0070611 39.048 105 63 1 16 119 14 118 1.68e-22 92.4
Msa1459870 MtrunA17_Chr7g0261281 43.137 102 57 1 16 116 14 115 1.78e-22 91.7
Msa1459870 MtrunA17_Chr1g0167661 42.056 107 59 2 12 116 10 115 1.80e-22 91.3
Msa1459870 MtrunA17_Chr4g0054391 41.748 103 58 2 10 110 8 110 2.57e-22 91.7
Msa1459870 MtrunA17_Chr2g0327821 38.255 149 81 5 16 162 8 147 3.72e-22 90.1
Msa1459870 MtrunA17_Chr3g0088461 44.762 105 55 2 16 118 24 127 3.86e-22 92.0
Msa1459870 MtrunA17_Chr1g0186061 42.857 105 57 2 16 118 22 125 4.25e-22 90.5
Msa1459870 MtrunA17_Chr2g0327351 41.346 104 59 2 10 111 8 111 5.30e-22 91.3
Msa1459870 MtrunA17_Chr4g0044421 42.157 102 58 1 16 116 14 115 5.33e-22 88.6
Msa1459870 MtrunA17_Chr1g0209661 39.130 115 69 1 16 129 29 143 5.86e-22 90.9
Msa1459870 MtrunA17_Chr3g0080861 43.810 105 56 2 16 118 39 142 6.63e-22 92.4
Msa1459870 MtrunA17_Chr1g0177901 35.294 153 90 3 27 179 5 148 7.08e-22 88.6
Msa1459870 MtrunA17_Chr1g0151941 41.284 109 62 2 10 116 8 116 8.00e-22 89.4
Msa1459870 MtrunA17_Chr1g0194951 41.818 110 61 2 16 123 14 122 8.87e-22 91.3
Msa1459870 MtrunA17_Chr2g0323411 42.202 109 60 2 10 116 8 115 9.43e-22 90.5
Msa1459870 MtrunA17_Chr7g0264641 38.532 109 65 2 10 116 8 116 1.89e-21 89.0
Msa1459870 MtrunA17_Chr1g0168661 44.762 105 55 2 16 118 23 126 1.92e-21 88.6
Msa1459870 MtrunA17_Chr4g0060721 43.137 102 57 1 16 116 15 116 2.46e-21 89.7
Msa1459870 MtrunA17_Chr2g0322521 45.378 119 61 3 3 118 17 134 2.97e-21 90.1
Msa1459870 MtrunA17_Chr6g0453471 39.450 109 63 2 10 116 8 115 3.23e-21 89.7
Msa1459870 MtrunA17_Chr4g0068061 38.333 120 68 2 16 134 14 128 3.29e-21 89.4
Msa1459870 MtrunA17_Chr4g0042671 41.748 103 57 2 16 116 14 115 3.98e-21 89.7
Msa1459870 MtrunA17_Chr7g0217741 41.176 102 59 1 16 116 14 115 4.47e-21 88.6
Msa1459870 MtrunA17_Chr4g0072751 41.748 103 58 2 10 110 8 110 4.56e-21 89.0
Msa1459870 MtrunA17_Chr1g0194291 34.328 134 87 1 1 133 8 141 9.23e-21 87.0
Msa1459870 MtrunA17_Chr6g0453211 39.806 103 61 1 10 111 8 110 1.02e-20 87.8
Msa1459870 MtrunA17_Chr4g0013361 45.714 105 55 2 16 118 12 116 2.24e-20 86.3
Msa1459870 MtrunA17_Chr7g0228231 40.323 124 68 3 2 122 5 125 2.28e-20 84.7
Msa1459870 MtrunA17_Chr4g0057031 42.202 109 60 2 10 116 8 115 2.95e-20 85.9
Msa1459870 MtrunA17_Chr7g0254411 41.176 102 59 1 16 116 14 115 4.91e-20 86.3
Msa1459870 MtrunA17_Chr7g0247131 50.633 79 37 1 42 118 5 83 8.79e-20 84.3
Msa1459870 MtrunA17_Chr3g0092401 39.048 105 63 1 16 119 15 119 9.60e-20 85.1
Msa1459870 MtrunA17_Chr3g0110351 39.823 113 65 2 10 120 8 119 1.29e-19 84.7
Msa1459870 MtrunA17_Chr5g0425591 44.681 94 45 4 4 94 2 91 2.05e-19 79.0
Msa1459870 MtrunA17_Chr4g0068921 42.857 105 59 1 6 109 16 120 3.68e-19 81.3
Msa1459870 MtrunA17_Chr5g0434571 40.179 112 64 2 10 119 44 154 4.48e-19 83.6
Msa1459870 MtrunA17_Chr6g0450101 39.496 119 68 3 16 132 16 132 4.57e-19 81.3
Msa1459870 MtrunA17_Chr7g0238651 40.187 107 61 1 16 119 7 113 6.00e-19 83.2
Msa1459870 MtrunA17_Chr6g0487491 39.316 117 61 3 10 116 8 124 8.16e-19 81.6
Msa1459870 MtrunA17_Chr7g0233061 41.414 99 56 1 11 109 175 271 9.12e-19 82.8
Msa1459870 MtrunA17_Chr2g0293911 34.646 127 82 1 8 133 18 144 8.60e-18 79.7
Msa1459870 MtrunA17_Chr5g0434901 53.968 63 29 0 48 110 8 70 1.09e-17 75.5
Msa1459870 MtrunA17_Chr8g0362231 33.333 111 74 0 19 129 25 135 1.76e-17 79.7
Msa1459870 MtrunA17_Chr5g0416341 34.921 126 69 2 19 144 29 141 2.09e-17 79.3
Msa1459870 MtrunA17_Chr7g0269831 43.137 102 57 1 16 116 14 115 9.49e-17 77.0
Msa1459870 MtrunA17_Chr7g0229101 53.226 62 29 0 49 110 8 69 1.57e-16 74.7
Msa1459870 MtrunA17_Chr3g0099141 39.326 89 53 1 10 97 36 124 9.39e-16 70.9
Msa1459870 MtrunA17_Chr8g0342511 48.000 75 36 2 16 88 14 87 1.55e-15 68.9
Msa1459870 MtrunA17_Chr8g0342531 45.455 77 39 2 16 90 14 89 1.67e-15 70.9
Msa1459870 MtrunA17_Chr7g0229131 43.210 81 39 1 49 122 8 88 3.75e-15 70.1
Msa1459870 MtrunA17_Chr8g0342461 45.455 77 40 1 16 90 14 90 6.20e-15 68.6
Msa1459870 MtrunA17_Chr3g0093811 46.377 69 35 2 49 116 18 85 1.23e-14 70.5
Msa1459870 MtrunA17_Chr2g0323321 37.374 99 59 2 10 106 7 104 1.62e-14 67.0
Msa1459870 MtrunA17_Chr6g0453751 36.893 103 55 4 2 94 8 110 1.89e-14 67.4
Msa1459870 MtrunA17_Chr8g0342471 44.156 77 41 1 16 90 14 90 2.39e-14 67.0
Msa1459870 MtrunA17_Chr3g0104501 55.556 54 24 0 13 66 130 183 9.43e-14 67.0
Msa1459870 MtrunA17_Chr5g0395221 41.333 75 43 1 16 89 14 88 1.91e-13 63.2
Msa1459870 MtrunA17_Chr4g0042611 38.667 75 45 1 16 89 14 88 6.53e-13 62.0
Msa1459870 MtrunA17_Chr6g0483051 36.264 91 57 1 19 109 72 161 1.04e-12 65.9
Msa1459870 MtrunA17_Chr6g0483051 33.333 120 69 3 14 123 116 234 2.31e-11 62.0
Msa1459870 MtrunA17_Chr7g0274481 38.824 85 51 1 17 101 8 91 8.81e-12 63.5
Msa1459870 MtrunA17_Chr7g0233151 46.032 63 33 1 66 128 1 62 1.39e-11 60.5
Msa1459870 MtrunA17_Chr5g0421201 54.902 51 20 1 72 122 16 63 4.38e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459870 AT1G17950.1 84.545 110 17 0 14 123 3 112 2.08e-68 209
Msa1459870 AT1G69560.1 84.404 109 17 0 13 121 104 212 6.67e-65 203
Msa1459870 AT1G69560.2 84.404 109 17 0 13 121 120 228 8.03e-65 203
Msa1459870 AT1G73410.1 85.321 109 16 0 14 122 4 112 5.44e-64 198
Msa1459870 AT1G73410.2 85.321 109 16 0 14 122 4 112 1.29e-63 196
Msa1459870 AT1G26780.1 78.947 114 24 0 16 129 98 211 2.43e-63 197
Msa1459870 AT1G26780.2 78.947 114 24 0 16 129 98 211 1.53e-62 198
Msa1459870 AT5G17800.1 76.991 113 26 0 10 122 87 199 1.32e-61 194
Msa1459870 AT4G33450.1 51.777 197 88 2 4 196 7 200 1.33e-61 192
Msa1459870 AT3G29020.1 72.973 111 30 0 11 121 60 170 4.25e-59 185
Msa1459870 AT3G29020.2 72.973 111 30 0 11 121 62 172 3.80e-58 185
Msa1459870 AT5G39700.1 60.952 105 41 0 17 121 57 161 5.42e-42 140
Msa1459870 AT2G39880.1 46.853 143 70 1 5 147 39 175 1.11e-38 136
Msa1459870 AT5G67300.1 59.406 101 41 0 16 116 6 106 1.46e-38 135
Msa1459870 AT3G50060.1 57.426 101 43 0 16 116 6 106 4.91e-38 133
Msa1459870 AT3G09230.1 57.426 101 43 0 16 116 55 155 1.37e-37 134
Msa1459870 AT3G55730.1 55.446 101 45 0 16 116 56 156 6.12e-37 132
Msa1459870 AT4G37260.1 50.459 109 54 0 16 124 13 121 1.17e-35 127
Msa1459870 AT2G23290.1 54.455 101 46 0 16 116 13 113 1.76e-35 127
Msa1459870 AT3G09370.1 43.902 164 76 3 16 179 130 277 5.48e-34 126
Msa1459870 AT3G09370.2 43.902 164 76 3 16 179 135 282 6.04e-34 126
Msa1459870 AT3G09370.3 55.446 101 45 0 16 116 143 243 9.44e-34 125
Msa1459870 AT5G11510.3 49.505 101 51 0 16 116 81 181 2.37e-31 120
Msa1459870 AT5G11510.1 49.505 101 51 0 16 116 81 181 2.37e-31 120
Msa1459870 AT5G11510.4 49.505 101 51 0 16 116 81 181 2.37e-31 120
Msa1459870 AT5G11510.5 49.505 101 51 0 16 116 81 181 2.90e-31 120
Msa1459870 AT5G11510.2 49.505 101 51 0 16 116 81 181 2.96e-31 120
Msa1459870 AT5G02320.1 50.495 101 50 0 16 116 127 227 7.50e-31 118
Msa1459870 AT5G02320.2 50.495 101 50 0 16 116 127 227 7.50e-31 118
Msa1459870 AT5G02320.3 50.495 101 50 0 16 116 67 167 9.08e-31 117
Msa1459870 AT5G11050.1 49.606 127 60 2 12 138 101 223 1.08e-30 116
Msa1459870 AT5G58850.1 47.581 124 62 1 4 127 93 213 1.44e-30 116
Msa1459870 AT3G27785.1 38.462 156 92 2 13 168 186 337 2.39e-30 115
Msa1459870 AT5G40360.1 46.729 107 57 0 16 122 158 264 1.39e-29 112
Msa1459870 AT5G14750.1 45.614 114 61 1 4 116 6 119 1.77e-29 108
Msa1459870 AT4G32730.5 47.525 101 53 0 16 116 87 187 1.87e-29 115
Msa1459870 AT4G32730.4 47.525 101 53 0 16 116 87 187 1.87e-29 115
Msa1459870 AT4G32730.3 47.525 101 53 0 16 116 87 187 1.87e-29 115
Msa1459870 AT4G32730.2 47.525 101 53 0 16 116 87 187 1.87e-29 115
Msa1459870 AT4G32730.1 47.525 101 53 0 16 116 87 187 2.02e-29 114
Msa1459870 AT3G12720.1 51.402 107 49 2 16 120 24 129 2.70e-29 110
Msa1459870 AT5G40330.1 47.059 102 53 1 16 116 14 115 3.82e-28 105
Msa1459870 AT4G25560.1 41.429 140 61 3 16 135 12 150 4.68e-28 107
Msa1459870 AT3G48920.1 47.788 113 52 3 16 122 20 131 1.07e-27 105
Msa1459870 AT1G18570.1 47.059 102 53 1 16 116 15 116 1.82e-27 106
Msa1459870 AT4G18770.1 49.533 107 51 1 16 122 217 320 3.12e-27 107
Msa1459870 AT1G79180.1 46.789 109 55 2 10 116 10 117 4.06e-27 104
Msa1459870 AT5G65230.1 45.133 113 59 2 6 116 4 115 6.90e-27 104
Msa1459870 AT3G27920.1 46.078 102 54 1 16 116 16 117 8.04e-27 102
Msa1459870 AT4G26930.1 48.571 105 53 1 16 119 21 125 1.02e-26 105
Msa1459870 AT3G53200.1 46.729 107 54 2 16 120 11 116 2.41e-26 101
Msa1459870 AT5G10280.1 45.133 113 59 2 6 116 4 115 2.55e-26 103
Msa1459870 AT4G00540.2 46.729 107 54 1 13 116 100 206 3.08e-26 104
Msa1459870 AT3G23250.1 45.098 102 55 1 16 116 14 115 3.65e-26 102
Msa1459870 AT4G00540.1 46.729 107 54 1 13 116 98 204 6.70e-26 103
Msa1459870 AT3G12820.1 46.789 109 55 2 10 116 10 117 1.07e-25 99.8
Msa1459870 AT2G26960.1 44.167 120 64 2 2 118 6 125 1.44e-25 102
Msa1459870 AT2G26950.1 42.857 112 60 2 12 122 14 122 1.58e-25 102
Msa1459870 AT3G13890.2 40.667 150 78 5 16 157 14 160 1.65e-25 101
Msa1459870 AT4G01680.3 44.762 105 55 2 16 118 14 117 2.27e-25 99.0
Msa1459870 AT4G17785.2 44.737 114 60 2 5 116 4 116 2.28e-25 101
Msa1459870 AT4G17785.1 38.816 152 89 3 5 154 4 153 2.37e-25 101
Msa1459870 AT1G63910.1 48.113 106 52 2 16 119 14 118 2.60e-25 101
Msa1459870 AT1G74080.1 48.421 95 48 1 16 109 14 108 2.74e-25 100
Msa1459870 AT2G25230.1 40.741 108 61 1 18 125 28 132 2.75e-25 98.6
Msa1459870 AT5G52600.1 40.164 122 67 2 16 131 14 135 4.72e-25 97.1
Msa1459870 AT1G56160.1 44.037 109 58 2 10 116 10 117 4.79e-25 99.4
Msa1459870 AT4G38620.1 47.573 103 51 2 16 116 14 115 4.99e-25 99.0
Msa1459870 AT4G01680.1 44.762 105 55 2 16 118 14 117 5.42e-25 99.8
Msa1459870 AT4G05100.1 43.860 114 61 2 5 116 4 116 6.42e-25 99.4
Msa1459870 AT1G74430.1 43.119 109 59 2 10 116 8 115 7.21e-25 98.2
Msa1459870 AT5G54230.1 45.098 102 55 1 16 116 14 115 7.41e-25 99.4
Msa1459870 AT1G22640.1 47.573 103 51 2 16 116 14 115 8.08e-25 97.8
Msa1459870 AT3G30210.1 44.643 112 59 2 13 122 26 136 1.24e-24 97.8
Msa1459870 AT3G01140.2 44.037 109 58 2 10 116 8 115 1.51e-24 99.0
Msa1459870 AT5G60890.1 41.509 106 61 1 16 120 14 119 1.86e-24 97.8
Msa1459870 AT2G32460.1 42.017 119 66 2 2 118 6 123 1.88e-24 100
Msa1459870 AT3G13890.1 37.975 158 80 5 16 157 14 169 2.23e-24 98.6
Msa1459870 AT3G61250.1 46.602 103 52 2 16 116 14 115 2.37e-24 97.4
Msa1459870 AT3G01140.1 44.037 109 58 2 10 116 51 158 2.60e-24 98.6
Msa1459870 AT1G35515.1 43.137 102 57 1 16 116 14 115 2.74e-24 95.5
Msa1459870 AT5G61420.2 43.396 106 59 1 16 120 14 119 2.94e-24 98.2
Msa1459870 AT1G57560.2 44.660 103 54 2 16 116 14 115 3.12e-24 96.7
Msa1459870 AT5G06100.1 41.818 110 63 1 10 118 28 137 3.18e-24 99.0
Msa1459870 AT1G57560.1 44.660 103 54 2 16 116 14 115 3.25e-24 97.4
Msa1459870 AT3G11440.2 43.269 104 58 1 16 118 43 146 3.38e-24 99.4
Msa1459870 AT5G56110.1 44.954 109 57 2 10 116 8 115 3.62e-24 97.4
Msa1459870 AT3G11440.3 43.269 104 58 1 16 118 43 146 3.87e-24 99.4
Msa1459870 AT3G11440.4 43.269 104 58 1 16 118 43 146 3.87e-24 99.4
Msa1459870 AT3G11440.1 43.269 104 58 1 16 118 43 146 3.87e-24 99.4
Msa1459870 AT5G06100.5 41.818 110 63 1 10 118 28 137 4.45e-24 99.0
Msa1459870 AT5G06100.2 41.818 110 63 1 10 118 28 137 4.45e-24 99.0
Msa1459870 AT5G06100.3 41.818 110 63 1 10 118 28 137 4.45e-24 99.0
Msa1459870 AT5G06100.4 41.818 110 63 1 10 118 28 137 4.45e-24 99.0
Msa1459870 AT5G26660.1 44.762 105 55 2 16 118 14 117 4.94e-24 97.4
Msa1459870 AT1G18710.1 41.284 109 61 2 10 116 8 115 5.06e-24 95.9
Msa1459870 AT2G31180.1 45.631 103 53 2 16 116 14 115 6.50e-24 95.5
Msa1459870 AT3G13540.1 42.991 107 60 1 16 121 25 131 8.02e-24 95.1
Msa1459870 AT4G28110.1 42.593 108 61 1 10 116 8 115 8.28e-24 95.9
Msa1459870 AT1G09540.1 43.925 107 57 2 16 120 14 119 8.83e-24 97.1
Msa1459870 AT5G57620.1 41.284 109 62 2 10 116 8 116 9.98e-24 96.3
Msa1459870 AT3G02940.2 42.593 108 61 1 10 116 8 115 1.04e-23 95.9
Msa1459870 AT1G16490.1 42.241 116 64 2 10 123 10 124 1.14e-23 95.1
Msa1459870 AT5G23000.1 44.037 109 59 2 10 116 8 116 1.16e-23 96.3
Msa1459870 AT5G16770.4 42.593 108 61 1 10 116 8 115 1.45e-23 95.9
Msa1459870 AT5G16770.3 42.593 108 61 1 10 116 8 115 1.45e-23 95.9
Msa1459870 AT3G02940.1 42.593 108 61 1 10 116 8 115 1.48e-23 95.9
Msa1459870 AT3G02940.3 42.593 108 61 1 10 116 8 115 1.48e-23 95.9
Msa1459870 AT2G32460.2 45.714 105 54 2 16 118 8 111 1.51e-23 97.4
Msa1459870 AT2G16720.1 44.660 103 54 2 16 116 14 115 1.59e-23 94.7
Msa1459870 AT5G07700.1 45.098 102 55 1 16 116 14 115 1.61e-23 95.9
Msa1459870 AT5G07700.2 45.098 102 55 1 16 116 14 115 1.61e-23 95.9
Msa1459870 AT5G12870.1 39.496 119 69 2 5 121 9 126 1.75e-23 94.7
Msa1459870 AT4G34990.1 45.631 103 53 2 16 116 14 115 1.85e-23 94.7
Msa1459870 AT5G16770.1 42.593 108 61 1 10 116 8 115 2.00e-23 95.5
Msa1459870 AT5G16770.2 42.593 108 61 1 10 116 8 115 2.00e-23 95.5
Msa1459870 AT4G09460.1 43.689 103 55 2 16 116 14 115 2.24e-23 93.6
Msa1459870 AT5G15310.1 41.667 108 62 1 10 116 8 115 2.62e-23 95.1
Msa1459870 AT5G15310.2 41.667 108 62 1 10 116 8 115 2.68e-23 95.1
Msa1459870 AT3G28470.1 45.545 101 54 1 10 109 8 108 2.76e-23 95.1
Msa1459870 AT4G01680.2 40.171 117 55 2 16 118 14 129 3.12e-23 95.5
Msa1459870 AT5G07690.1 43.564 101 56 1 16 115 14 114 3.41e-23 95.1
Msa1459870 AT5G15310.4 41.667 108 62 1 10 116 8 115 3.47e-23 93.2
Msa1459870 AT1G06180.1 40.517 116 66 2 16 129 14 128 3.47e-23 93.2
Msa1459870 AT3G49690.1 41.284 109 62 2 10 116 8 116 6.39e-23 94.0
Msa1459870 AT4G21440.1 45.631 103 53 2 16 116 14 115 6.73e-23 94.4
Msa1459870 AT5G14340.1 44.762 105 55 2 16 118 26 129 7.51e-23 93.2
Msa1459870 AT1G79180.2 35.616 146 60 2 10 121 10 155 1.03e-22 93.6
Msa1459870 AT5G55020.1 43.810 105 58 1 16 119 28 132 1.10e-22 95.1
Msa1459870 AT1G34670.1 42.593 108 61 1 10 116 8 115 1.20e-22 94.0
Msa1459870 AT5G52260.1 47.573 103 51 2 16 116 14 115 1.41e-22 92.0
Msa1459870 AT3G46130.1 44.037 109 58 2 16 122 11 118 1.49e-22 92.0
Msa1459870 AT1G66370.1 39.474 114 68 1 8 120 2 115 1.80e-22 91.7
Msa1459870 AT5G59780.3 43.119 109 59 2 16 122 10 117 2.06e-22 91.3
Msa1459870 AT3G47600.1 39.655 116 69 1 10 124 8 123 2.44e-22 92.8
Msa1459870 AT5G62470.1 41.346 104 61 0 16 119 14 117 3.47e-22 92.4
Msa1459870 AT5G65790.1 37.600 125 72 3 10 132 8 128 3.91e-22 92.8
Msa1459870 AT5G49330.1 44.118 102 56 1 16 116 14 115 4.30e-22 92.0
Msa1459870 AT5G35550.1 44.792 96 52 1 16 110 16 111 6.70e-22 90.1
Msa1459870 AT4G13480.1 40.476 126 64 3 16 131 8 132 7.36e-22 90.1
Msa1459870 AT5G14750.3 52.941 68 32 0 49 116 18 85 9.35e-22 87.8
Msa1459870 AT3G24310.1 44.762 105 55 2 16 118 20 123 1.36e-21 89.7
Msa1459870 AT3G01530.1 40.000 120 69 2 5 122 16 134 1.49e-21 88.2
Msa1459870 AT3G08500.1 42.308 104 59 1 16 118 32 135 1.57e-21 90.5
Msa1459870 AT2G47190.1 35.294 136 87 1 1 135 7 142 3.19e-21 88.6
Msa1459870 AT3G60460.1 48.958 96 47 2 16 109 13 108 3.82e-21 89.0
Msa1459870 AT1G74650.1 43.137 102 57 1 16 116 14 115 4.98e-21 89.0
Msa1459870 AT3G53200.2 52.778 72 34 0 49 120 12 83 9.93e-21 85.9
Msa1459870 AT2G47460.1 43.137 102 57 1 16 116 14 115 1.22e-20 88.6
Msa1459870 AT4G37780.1 37.615 109 66 2 10 116 8 116 1.47e-20 87.4
Msa1459870 AT1G68320.1 42.453 106 58 2 16 119 21 125 1.60e-20 87.0
Msa1459870 AT5G62470.2 40.952 105 61 1 16 119 14 118 1.73e-20 87.8
Msa1459870 AT3G28910.1 39.815 108 64 1 10 116 8 115 2.49e-20 87.0
Msa1459870 AT1G66380.1 41.667 108 62 1 11 117 5 112 2.68e-20 83.2
Msa1459870 AT5G16600.1 41.071 112 63 2 10 119 8 118 2.74e-20 87.0
Msa1459870 AT2G36890.1 41.284 109 62 2 10 116 8 116 2.75e-20 86.7
Msa1459870 AT2G36890.2 41.284 109 62 2 10 116 49 157 3.69e-20 86.7
Msa1459870 AT4G12350.1 35.156 128 79 3 16 140 14 140 3.75e-20 85.9
Msa1459870 AT1G25340.2 37.607 117 69 1 16 132 20 132 3.86e-20 85.9
Msa1459870 AT1G25340.1 38.655 119 70 2 16 132 20 137 3.94e-20 85.9
Msa1459870 AT1G08810.1 40.741 108 63 1 10 116 8 115 4.23e-20 85.9
Msa1459870 AT1G56650.1 36.957 138 85 2 11 146 5 142 5.28e-20 85.1
Msa1459870 AT5G40430.1 27.041 196 126 4 2 187 40 228 6.03e-20 85.1
Msa1459870 AT1G25340.3 37.288 118 70 1 16 133 20 133 6.73e-20 85.9
Msa1459870 AT4G22680.1 41.284 109 61 2 10 116 8 115 1.22e-19 84.3
Msa1459870 AT1G66230.1 39.823 113 65 2 10 120 8 119 1.32e-19 84.3
Msa1459870 AT5G40350.1 43.158 95 53 1 16 109 19 113 1.53e-19 83.2
Msa1459870 AT1G48000.1 44.211 95 52 1 16 109 34 128 1.65e-19 83.6
Msa1459870 AT3G27810.1 43.158 95 53 1 16 109 22 116 1.91e-19 83.2
Msa1459870 AT2G02820.3 35.484 124 80 0 19 142 33 156 2.39e-19 84.3
Msa1459870 AT2G02820.1 35.484 124 80 0 19 142 33 156 4.83e-19 84.7
Msa1459870 AT2G02820.2 35.484 124 80 0 19 142 33 156 6.28e-19 84.3
Msa1459870 AT3G06490.1 37.795 127 76 2 9 133 14 139 9.27e-19 82.8
Msa1459870 AT3G62610.1 40.196 102 60 1 16 116 14 115 9.33e-19 83.2
Msa1459870 AT5G49620.1 33.143 175 100 4 6 179 18 176 1.54e-18 82.0
Msa1459870 AT3G12820.2 51.471 68 33 0 49 116 2 69 2.64e-18 79.3
Msa1459870 AT1G14350.2 35.075 134 73 2 19 152 28 147 3.00e-18 82.4
Msa1459870 AT1G14350.1 35.075 134 73 2 19 152 28 147 3.00e-18 82.4
Msa1459870 AT1G66390.1 39.815 108 64 1 11 117 5 112 4.64e-18 79.7
Msa1459870 AT5G59780.2 48.649 74 38 0 49 122 23 96 4.83e-18 79.0
Msa1459870 AT3G18100.3 40.426 94 56 0 16 109 498 591 5.62e-18 81.6
Msa1459870 AT3G18100.1 40.426 94 56 0 16 109 546 639 6.07e-18 81.6
Msa1459870 AT3G46130.3 48.649 74 38 0 49 122 13 86 6.31e-18 79.0
Msa1459870 AT3G18100.4 40.426 94 56 0 16 109 385 478 6.33e-18 81.6
Msa1459870 AT3G18100.2 40.426 94 56 0 16 109 333 426 6.83e-18 81.6
Msa1459870 AT3G46130.4 48.649 74 38 0 49 122 23 96 7.46e-18 79.0
Msa1459870 AT5G35550.2 54.839 62 28 0 49 110 53 114 3.66e-17 77.4
Msa1459870 AT5G62320.1 41.818 110 54 3 16 116 15 123 5.06e-17 77.0
Msa1459870 AT5G26660.2 47.143 70 37 0 49 118 17 86 9.24e-17 77.4
Msa1459870 AT3G47600.2 46.053 76 41 0 49 124 42 117 2.13e-16 76.3
Msa1459870 AT2G37630.1 37.963 108 64 1 16 120 4 111 5.88e-16 75.5
Msa1459870 AT5G40350.2 50.820 61 30 0 49 109 8 68 1.05e-15 72.0
Msa1459870 AT3G27810.2 50.820 61 30 0 49 109 7 67 1.59e-15 71.6
Msa1459870 AT5G49620.2 30.688 189 100 5 6 179 18 190 5.44e-15 72.4
Msa1459870 AT1G66380.3 46.835 79 42 0 49 127 11 89 2.48e-14 66.6
Msa1459870 AT5G14750.4 46.552 58 31 0 59 116 1 58 3.34e-14 67.0
Msa1459870 AT5G14750.2 46.552 58 31 0 59 116 1 58 3.34e-14 67.0
Msa1459870 AT1G71030.2 44.615 65 36 0 52 116 5 69 7.26e-14 67.0
Msa1459870 AT1G71030.1 44.615 65 36 0 52 116 19 83 9.37e-14 67.0
Msa1459870 AT1G22640.3 50.000 58 29 0 59 116 1 58 3.66e-13 65.9
Msa1459870 AT3G23250.2 46.552 58 31 0 59 116 1 58 5.04e-13 65.9
Msa1459870 AT1G09770.1 38.824 85 51 1 17 101 8 91 2.03e-11 62.8
Msa1459870 AT1G66380.2 38.095 84 51 1 11 93 5 88 9.81e-11 57.0

Find 46 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCAATTGAATTCCAATTC+TGG 0.202639 tig0040510:-11204 Msa1459870:intergenic
AAAGGTCTTCTGTTAATTCT+TGG 0.286487 tig0040510:-11870 Msa1459870:intergenic
AGATACTGTTTATAGAATTA+TGG 0.289199 tig0040510:-11040 Msa1459870:intergenic
TTTCTTGTGATGCAATTATC+AGG 0.303432 tig0040510:-12239 Msa1459870:intergenic
AACAATATGGTGCCCAGAAT+TGG 0.308300 tig0040510:+11191 Msa1459870:CDS
TTCCCTTACACAACGAGAAT+TGG 0.308544 tig0040510:+12094 Msa1459870:CDS
CGTCAACTTGTTGAACAATA+TGG 0.317875 tig0040510:+11178 Msa1459870:CDS
CTTCTAGTTCTCTTGCCTCT+TGG 0.331265 tig0040510:+12149 Msa1459870:CDS
GAATCATTGGCATGTTATAA+TGG 0.349760 tig0040510:+11991 Msa1459870:CDS
AAAGGATCTAATATTTATAA+AGG 0.368916 tig0040510:+12253 Msa1459870:CDS
ACTTCTCTTGCCACATAACT+TGG 0.368979 tig0040510:-12042 Msa1459870:intergenic
AATTGGCAGGGAAAAGTTGT+AGG 0.376520 tig0040510:+11816 Msa1459870:intron
ATCGGATTCACGGGAACAAA+TGG 0.391338 tig0040510:+11921 Msa1459870:CDS
AGCAATTGAATTCCAATTCT+GGG 0.403769 tig0040510:-11203 Msa1459870:intergenic
TATCCAATTCTCGTTGTGTA+AGG 0.414572 tig0040510:-12104 Msa1459870:intergenic
TCTTCTTCCTCTTCTGTGAA+AGG 0.428456 tig0040510:-11888 Msa1459870:intergenic
GATAATTGCATCACAAGAAA+AGG 0.455907 tig0040510:+12235 Msa1459870:CDS
AATACATACCTGATCTTCCT+TGG 0.468542 tig0040510:-11234 Msa1459870:intergenic
CAGGGAAAAGTTGTAGGTTG+AGG 0.483082 tig0040510:+11822 Msa1459870:intron
GTAAGGGAAATTAAGTATAG+AGG 0.483574 tig0040510:-12087 Msa1459870:intergenic
TTGCGGCTCATCGGATTCAC+GGG 0.496141 tig0040510:+11912 Msa1459870:CDS
AGAGTTGTCCACGTGGTCAC+TGG 0.498220 tig0040510:+11131 Msa1459870:CDS
ATAATGCTGTGAAGAATCAT+TGG 0.498884 tig0040510:+11978 Msa1459870:CDS
CAGAAGACCTTTCACAGAAG+AGG 0.503737 tig0040510:+11874 Msa1459870:CDS
CTTGCGGCTCATCGGATTCA+CGG 0.514410 tig0040510:+11911 Msa1459870:CDS
ACGAGAATTGGATATGAGAA+TGG 0.514578 tig0040510:+12106 Msa1459870:CDS
TCGGATTCACGGGAACAAAT+GGG 0.515800 tig0040510:+11922 Msa1459870:CDS
CAAGAGGCAAGAGAACTAGA+AGG 0.520571 tig0040510:-12155 Msa1459870:intergenic
GTGACCACGTGGACAACTCT+TGG 0.531230 tig0040510:-11128 Msa1459870:intergenic
TATAATGGCTAGAAAACAAA+GGG 0.536500 tig0040510:+12006 Msa1459870:CDS
ACAGCATTATCAGTTCTACC+AGG 0.552201 tig0040510:-11972 Msa1459870:intergenic
AGAGACTACTTGCGGCTCAT+CGG 0.552562 tig0040510:+11903 Msa1459870:CDS
GGAAAAGTTGTAGGTTGAGG+TGG 0.578152 tig0040510:+11825 Msa1459870:CDS
ATCCAATTCTCGTTGTGTAA+GGG 0.578227 tig0040510:-12103 Msa1459870:intergenic
AGGGAACAATCCAAGTTATG+TGG 0.586173 tig0040510:+12025 Msa1459870:CDS
GCCTCTGCAACTACCACACA+TGG 0.588217 tig0040510:+11078 Msa1459870:exon
TCCATGTGTGGTAGTTGCAG+AGG 0.607994 tig0040510:-11079 Msa1459870:intergenic
TTATAATGGCTAGAAAACAA+AGG 0.628974 tig0040510:+12005 Msa1459870:CDS
CAGCATTATCAGTTCTACCA+GGG 0.636613 tig0040510:-11971 Msa1459870:intergenic
GGTAGTTGCAGAGGCTGATG+AGG 0.643431 tig0040510:-11070 Msa1459870:intergenic
CATAGAAGCAAAATTCCAAG+AGG 0.652007 tig0040510:-12171 Msa1459870:intergenic
GGAAGAAGAGAGACTACTTG+CGG 0.656523 tig0040510:+11895 Msa1459870:CDS
GAAGAAGAATCCTCCATGTG+TGG 0.666109 tig0040510:-11091 Msa1459870:intergenic
GCGGGTCGCCAGTGACCACG+TGG 0.707521 tig0040510:-11139 Msa1459870:intergenic
GATACCAAGAGTTGTCCACG+TGG 0.762573 tig0040510:+11124 Msa1459870:CDS
TCTGCAACTACCACACATGG+AGG 0.765362 tig0040510:+11081 Msa1459870:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTCCTTTTAAT+TGG + tig0040510:11799-11818 Msa1459870:intron 10.0%
!!! TTTTTTTTTTTCCTTTTAAT+TGG + tig0040510:11799-11818 Msa1459870:intron 10.0%
!! ATGAATTTGAAAATTAAACA+AGG - tig0040510:11308-11327 Msa1459870:intergenic 15.0%
!!! TCAACCAATAAAATTTTAAT+TGG + tig0040510:11685-11704 Msa1459870:intron 15.0%
!!! CTTACCAATTAAAATTTTAT+TGG - tig0040510:11692-11711 Msa1459870:intergenic 15.0%
!! ATGAATTTGAAAATTAAACA+AGG - tig0040510:11308-11327 Msa1459870:intergenic 15.0%
!!! TCAACCAATAAAATTTTAAT+TGG + tig0040510:11685-11704 Msa1459870:intron 15.0%
!!! CTTACCAATTAAAATTTTAT+TGG - tig0040510:11692-11711 Msa1459870:intergenic 15.0%
!! AGATACTGTTTATAGAATTA+TGG - tig0040510:11043-11062 None:intergenic 20.0%
!! AATTTGAAAATTAAACAAGG+AGG - tig0040510:11305-11324 Msa1459870:intergenic 20.0%
!! TTTCAAATTCATAGTGAAAT+TGG + tig0040510:11316-11335 Msa1459870:intron 20.0%
!! TTCAAATTCATAGTGAAATT+GGG + tig0040510:11317-11336 Msa1459870:intron 20.0%
!!! TTTGGAATTTTTGGTTATTT+TGG + tig0040510:11591-11610 Msa1459870:intron 20.0%
!! TACATGAGATAATTAATAGA+TGG - tig0040510:11736-11755 Msa1459870:intergenic 20.0%
!! AGATACTGTTTATAGAATTA+TGG - tig0040510:11043-11062 Msa1459870:intergenic 20.0%
!! AATTTGAAAATTAAACAAGG+AGG - tig0040510:11305-11324 Msa1459870:intergenic 20.0%
!! TTTCAAATTCATAGTGAAAT+TGG + tig0040510:11316-11335 Msa1459870:intron 20.0%
!! TTCAAATTCATAGTGAAATT+GGG + tig0040510:11317-11336 Msa1459870:intron 20.0%
!!! TTTGGAATTTTTGGTTATTT+TGG + tig0040510:11591-11610 Msa1459870:intron 20.0%
!! TACATGAGATAATTAATAGA+TGG - tig0040510:11736-11755 Msa1459870:intergenic 20.0%
!!! GTTATTTTGGTTTTCTCTAT+TGG + tig0040510:11604-11623 Msa1459870:intron 25.0%
!!! TTTTTTTCCTTTTAATTGGC+AGG + tig0040510:11803-11822 Msa1459870:intron 25.0%
!!! TTTTTTCCTTTTAATTGGCA+GGG + tig0040510:11804-11823 Msa1459870:intron 25.0%
! TTATAATGGCTAGAAAACAA+AGG + tig0040510:12005-12024 Msa1459870:CDS 25.0%
! TATAATGGCTAGAAAACAAA+GGG + tig0040510:12006-12025 Msa1459870:CDS 25.0%
!!! GTTATTTTGGTTTTCTCTAT+TGG + tig0040510:11604-11623 Msa1459870:intron 25.0%
!!! TTTTTTTCCTTTTAATTGGC+AGG + tig0040510:11803-11822 Msa1459870:intron 25.0%
!!! TTTTTTCCTTTTAATTGGCA+GGG + tig0040510:11804-11823 Msa1459870:intron 25.0%
! TTATAATGGCTAGAAAACAA+AGG + tig0040510:12005-12024 Msa1459870:CDS 25.0%
! TATAATGGCTAGAAAACAAA+GGG + tig0040510:12006-12025 Msa1459870:CDS 25.0%
AGCAATTGAATTCCAATTCT+GGG - tig0040510:11206-11225 Msa1459870:intergenic 30.0%
TGATATCCTTCTTCTTAACA+TGG - tig0040510:11395-11414 Msa1459870:intergenic 30.0%
ATGTTAAGAAGAAGGATATC+AGG + tig0040510:11394-11413 Msa1459870:intron 30.0%
TGGTATTTATGTTAGTGAGA+AGG + tig0040510:11428-11447 Msa1459870:intron 30.0%
GGTATTTATGTTAGTGAGAA+GGG + tig0040510:11429-11448 Msa1459870:intron 30.0%
! ATTCAAGTTTCTGTTGTTCT+TGG + tig0040510:11513-11532 Msa1459870:intron 30.0%
! TTACATTTGCTTGTTGAGTT+TGG + tig0040510:11573-11592 Msa1459870:intron 30.0%
!! CTTGTTGAGTTTGGAATTTT+TGG + tig0040510:11582-11601 Msa1459870:intron 30.0%
AAAGGTCTTCTGTTAATTCT+TGG - tig0040510:11866-11885 Msa1459870:intergenic 30.0%
ATAATGCTGTGAAGAATCAT+TGG + tig0040510:11978-11997 Msa1459870:CDS 30.0%
GAATCATTGGCATGTTATAA+TGG + tig0040510:11991-12010 Msa1459870:CDS 30.0%
GTAAGGGAAATTAAGTATAG+AGG - tig0040510:12083-12102 Msa1459870:intergenic 30.0%
TTTCTTGTGATGCAATTATC+AGG - tig0040510:12235-12254 Msa1459870:intergenic 30.0%
GATAATTGCATCACAAGAAA+AGG + tig0040510:12235-12254 Msa1459870:CDS 30.0%
AGCAATTGAATTCCAATTCT+GGG - tig0040510:11206-11225 Msa1459870:intergenic 30.0%
TGATATCCTTCTTCTTAACA+TGG - tig0040510:11395-11414 Msa1459870:intergenic 30.0%
ATGTTAAGAAGAAGGATATC+AGG + tig0040510:11394-11413 Msa1459870:intron 30.0%
TGGTATTTATGTTAGTGAGA+AGG + tig0040510:11428-11447 Msa1459870:intron 30.0%
GGTATTTATGTTAGTGAGAA+GGG + tig0040510:11429-11448 Msa1459870:intron 30.0%
! ATTCAAGTTTCTGTTGTTCT+TGG + tig0040510:11513-11532 Msa1459870:intron 30.0%
! TTACATTTGCTTGTTGAGTT+TGG + tig0040510:11573-11592 Msa1459870:intron 30.0%
!! CTTGTTGAGTTTGGAATTTT+TGG + tig0040510:11582-11601 Msa1459870:intron 30.0%
AAAGGTCTTCTGTTAATTCT+TGG - tig0040510:11866-11885 Msa1459870:intergenic 30.0%
ATAATGCTGTGAAGAATCAT+TGG + tig0040510:11978-11997 Msa1459870:CDS 30.0%
GAATCATTGGCATGTTATAA+TGG + tig0040510:11991-12010 Msa1459870:CDS 30.0%
GTAAGGGAAATTAAGTATAG+AGG - tig0040510:12083-12102 Msa1459870:intergenic 30.0%
TTTCTTGTGATGCAATTATC+AGG - tig0040510:12235-12254 Msa1459870:intergenic 30.0%
GATAATTGCATCACAAGAAA+AGG + tig0040510:12235-12254 Msa1459870:CDS 30.0%
! ACGAAGTTTTTCATCTTCAG+CGG - tig0040510:11161-11180 Msa1459870:intergenic 35.0%
!! CGTCAACTTGTTGAACAATA+TGG + tig0040510:11178-11197 Msa1459870:CDS 35.0%
CAGCAATTGAATTCCAATTC+TGG - tig0040510:11207-11226 Msa1459870:intergenic 35.0%
TCAATTGCTGAAAAACTCCA+AGG + tig0040510:11217-11236 Msa1459870:CDS 35.0%
AATACATACCTGATCTTCCT+TGG - tig0040510:11237-11256 Msa1459870:intergenic 35.0%
TCTTCTTAACATGGCATTTC+TGG - tig0040510:11386-11405 Msa1459870:intergenic 35.0%
GAAATGCCATGTTAAGAAGA+AGG + tig0040510:11386-11405 Msa1459870:intron 35.0%
GATATCAGGAAGTTTCTTGA+TGG + tig0040510:11408-11427 Msa1459870:intron 35.0%
TTATGTTAGTGAGAAGGGAT+CGG + tig0040510:11434-11453 Msa1459870:intron 35.0%
AGTTTCTGTTGTTCTTGGAT+TGG + tig0040510:11518-11537 Msa1459870:intron 35.0%
!!! TTGGATTGGTTACTGTTTTG+TGG + tig0040510:11532-11551 Msa1459870:intron 35.0%
! ACTTTTCCCTGCCAATTAAA+AGG - tig0040510:11813-11832 Msa1459870:intergenic 35.0%
ATCCAATTCTCGTTGTGTAA+GGG - tig0040510:12099-12118 Msa1459870:intergenic 35.0%
TATCCAATTCTCGTTGTGTA+AGG - tig0040510:12100-12119 Msa1459870:intergenic 35.0%
ACGAGAATTGGATATGAGAA+TGG + tig0040510:12106-12125 Msa1459870:CDS 35.0%
CATAGAAGCAAAATTCCAAG+AGG - tig0040510:12167-12186 Msa1459870:intergenic 35.0%
! ACGAAGTTTTTCATCTTCAG+CGG - tig0040510:11161-11180 Msa1459870:intergenic 35.0%
!! CGTCAACTTGTTGAACAATA+TGG + tig0040510:11178-11197 Msa1459870:CDS 35.0%
CAGCAATTGAATTCCAATTC+TGG - tig0040510:11207-11226 Msa1459870:intergenic 35.0%
TCAATTGCTGAAAAACTCCA+AGG + tig0040510:11217-11236 Msa1459870:CDS 35.0%
AATACATACCTGATCTTCCT+TGG - tig0040510:11237-11256 Msa1459870:intergenic 35.0%
TCTTCTTAACATGGCATTTC+TGG - tig0040510:11386-11405 Msa1459870:intergenic 35.0%
GAAATGCCATGTTAAGAAGA+AGG + tig0040510:11386-11405 Msa1459870:intron 35.0%
GATATCAGGAAGTTTCTTGA+TGG + tig0040510:11408-11427 Msa1459870:intron 35.0%
TTATGTTAGTGAGAAGGGAT+CGG + tig0040510:11434-11453 Msa1459870:intron 35.0%
AGTTTCTGTTGTTCTTGGAT+TGG + tig0040510:11518-11537 Msa1459870:intron 35.0%
!!! TTGGATTGGTTACTGTTTTG+TGG + tig0040510:11532-11551 Msa1459870:intron 35.0%
! ACTTTTCCCTGCCAATTAAA+AGG - tig0040510:11813-11832 Msa1459870:intergenic 35.0%
ATCCAATTCTCGTTGTGTAA+GGG - tig0040510:12099-12118 Msa1459870:intergenic 35.0%
TATCCAATTCTCGTTGTGTA+AGG - tig0040510:12100-12119 Msa1459870:intergenic 35.0%
ACGAGAATTGGATATGAGAA+TGG + tig0040510:12106-12125 Msa1459870:CDS 35.0%
CATAGAAGCAAAATTCCAAG+AGG - tig0040510:12167-12186 Msa1459870:intergenic 35.0%
! CGAAGTTTTTCATCTTCAGC+GGG - tig0040510:11160-11179 Msa1459870:intergenic 40.0%
AACAATATGGTGCCCAGAAT+TGG + tig0040510:11191-11210 Msa1459870:CDS 40.0%
GAAAAACTCCAAGGAAGATC+AGG + tig0040510:11226-11245 Msa1459870:CDS 40.0%
AATTGGCAGGGAAAAGTTGT+AGG + tig0040510:11816-11835 Msa1459870:intron 40.0%
TCTTCTTCCTCTTCTGTGAA+AGG - tig0040510:11884-11903 Msa1459870:intergenic 40.0%
! CTAATAGCAAGACTTTTCCC+TGG + tig0040510:11947-11966 Msa1459870:CDS 40.0%
CAGCATTATCAGTTCTACCA+GGG - tig0040510:11967-11986 Msa1459870:intergenic 40.0%
ACAGCATTATCAGTTCTACC+AGG - tig0040510:11968-11987 Msa1459870:intergenic 40.0%
AGGGAACAATCCAAGTTATG+TGG + tig0040510:12025-12044 Msa1459870:CDS 40.0%
ACTTCTCTTGCCACATAACT+TGG - tig0040510:12038-12057 Msa1459870:intergenic 40.0%
TTCCCTTACACAACGAGAAT+TGG + tig0040510:12094-12113 Msa1459870:CDS 40.0%
! CGAAGTTTTTCATCTTCAGC+GGG - tig0040510:11160-11179 Msa1459870:intergenic 40.0%
AACAATATGGTGCCCAGAAT+TGG + tig0040510:11191-11210 Msa1459870:CDS 40.0%
GAAAAACTCCAAGGAAGATC+AGG + tig0040510:11226-11245 Msa1459870:CDS 40.0%
AATTGGCAGGGAAAAGTTGT+AGG + tig0040510:11816-11835 Msa1459870:intron 40.0%
TCTTCTTCCTCTTCTGTGAA+AGG - tig0040510:11884-11903 Msa1459870:intergenic 40.0%
! CTAATAGCAAGACTTTTCCC+TGG + tig0040510:11947-11966 Msa1459870:CDS 40.0%
CAGCATTATCAGTTCTACCA+GGG - tig0040510:11967-11986 Msa1459870:intergenic 40.0%
ACAGCATTATCAGTTCTACC+AGG - tig0040510:11968-11987 Msa1459870:intergenic 40.0%
AGGGAACAATCCAAGTTATG+TGG + tig0040510:12025-12044 Msa1459870:CDS 40.0%
ACTTCTCTTGCCACATAACT+TGG - tig0040510:12038-12057 Msa1459870:intergenic 40.0%
TTCCCTTACACAACGAGAAT+TGG + tig0040510:12094-12113 Msa1459870:CDS 40.0%
GAAGAAGAATCCTCCATGTG+TGG - tig0040510:11094-11113 Msa1459870:intergenic 45.0%
CAGGGAAAAGTTGTAGGTTG+AGG + tig0040510:11822-11841 Msa1459870:intron 45.0%
! GGAAAAGTTGTAGGTTGAGG+TGG + tig0040510:11825-11844 Msa1459870:CDS 45.0%
CAGAAGACCTTTCACAGAAG+AGG + tig0040510:11874-11893 Msa1459870:CDS 45.0%
GGAAGAAGAGAGACTACTTG+CGG + tig0040510:11895-11914 Msa1459870:CDS 45.0%
ATCGGATTCACGGGAACAAA+TGG + tig0040510:11921-11940 Msa1459870:CDS 45.0%
TCGGATTCACGGGAACAAAT+GGG + tig0040510:11922-11941 Msa1459870:CDS 45.0%
CAAGAGGCAAGAGAACTAGA+AGG - tig0040510:12151-12170 Msa1459870:intergenic 45.0%
!! CTTCTAGTTCTCTTGCCTCT+TGG + tig0040510:12149-12168 Msa1459870:CDS 45.0%
GAAGAAGAATCCTCCATGTG+TGG - tig0040510:11094-11113 Msa1459870:intergenic 45.0%
CAGGGAAAAGTTGTAGGTTG+AGG + tig0040510:11822-11841 Msa1459870:intron 45.0%
! GGAAAAGTTGTAGGTTGAGG+TGG + tig0040510:11825-11844 Msa1459870:CDS 45.0%
CAGAAGACCTTTCACAGAAG+AGG + tig0040510:11874-11893 Msa1459870:CDS 45.0%
GGAAGAAGAGAGACTACTTG+CGG + tig0040510:11895-11914 Msa1459870:CDS 45.0%
ATCGGATTCACGGGAACAAA+TGG + tig0040510:11921-11940 Msa1459870:CDS 45.0%
TCGGATTCACGGGAACAAAT+GGG + tig0040510:11922-11941 Msa1459870:CDS 45.0%
CAAGAGGCAAGAGAACTAGA+AGG - tig0040510:12151-12170 Msa1459870:intergenic 45.0%
!! CTTCTAGTTCTCTTGCCTCT+TGG + tig0040510:12149-12168 Msa1459870:CDS 45.0%
TCCATGTGTGGTAGTTGCAG+AGG - tig0040510:11082-11101 Msa1459870:intergenic 50.0%
TCTGCAACTACCACACATGG+AGG + tig0040510:11081-11100 Msa1459870:exon 50.0%
GATACCAAGAGTTGTCCACG+TGG + tig0040510:11124-11143 Msa1459870:CDS 50.0%
TGTTAGTGAGAAGGGATCGG+TGG + tig0040510:11437-11456 Msa1459870:intron 50.0%
AGAGACTACTTGCGGCTCAT+CGG + tig0040510:11903-11922 Msa1459870:CDS 50.0%
TCCATGTGTGGTAGTTGCAG+AGG - tig0040510:11082-11101 Msa1459870:intergenic 50.0%
TCTGCAACTACCACACATGG+AGG + tig0040510:11081-11100 Msa1459870:exon 50.0%
GATACCAAGAGTTGTCCACG+TGG + tig0040510:11124-11143 Msa1459870:CDS 50.0%
TGTTAGTGAGAAGGGATCGG+TGG + tig0040510:11437-11456 Msa1459870:intron 50.0%
AGAGACTACTTGCGGCTCAT+CGG + tig0040510:11903-11922 Msa1459870:CDS 50.0%
GGTAGTTGCAGAGGCTGATG+AGG - tig0040510:11073-11092 None:intergenic 55.0%
GCCTCTGCAACTACCACACA+TGG + tig0040510:11078-11097 Msa1459870:exon 55.0%
GTGACCACGTGGACAACTCT+TGG - tig0040510:11131-11150 Msa1459870:intergenic 55.0%
AGAGTTGTCCACGTGGTCAC+TGG + tig0040510:11131-11150 Msa1459870:CDS 55.0%
CTTGCGGCTCATCGGATTCA+CGG + tig0040510:11911-11930 Msa1459870:CDS 55.0%
TTGCGGCTCATCGGATTCAC+GGG + tig0040510:11912-11931 Msa1459870:CDS 55.0%
GGTAGTTGCAGAGGCTGATG+AGG - tig0040510:11073-11092 Msa1459870:intergenic 55.0%
GCCTCTGCAACTACCACACA+TGG + tig0040510:11078-11097 Msa1459870:exon 55.0%
GTGACCACGTGGACAACTCT+TGG - tig0040510:11131-11150 Msa1459870:intergenic 55.0%
AGAGTTGTCCACGTGGTCAC+TGG + tig0040510:11131-11150 Msa1459870:CDS 55.0%
CTTGCGGCTCATCGGATTCA+CGG + tig0040510:11911-11930 Msa1459870:CDS 55.0%
TTGCGGCTCATCGGATTCAC+GGG + tig0040510:11912-11931 Msa1459870:CDS 55.0%
GCGGGTCGCCAGTGACCACG+TGG - tig0040510:11142-11161 Msa1459870:intergenic 75.0%
GCGGGTCGCCAGTGACCACG+TGG - tig0040510:11142-11161 Msa1459870:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0040510 gene 11027 12273 11027 ID=Msa1459870;Name=Msa1459870
tig0040510 mRNA 11027 12273 11027 ID=Msa1459870-mRNA-1;Parent=Msa1459870;Name=Msa1459870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=70|1|0.5|1|1|1|2|0|200
tig0040510 exon 11027 11247 11027 ID=Msa1459870-mRNA-1:exon:22463;Parent=Msa1459870-mRNA-1
tig0040510 exon 11825 12273 11825 ID=Msa1459870-mRNA-1:exon:22464;Parent=Msa1459870-mRNA-1
tig0040510 five_prime_UTR 11027 11096 11027 ID=Msa1459870-mRNA-1:five_prime_utr;Parent=Msa1459870-mRNA-1
tig0040510 CDS 11097 11247 11097 ID=Msa1459870-mRNA-1:cds;Parent=Msa1459870-mRNA-1
tig0040510 CDS 11825 12273 11825 ID=Msa1459870-mRNA-1:cds;Parent=Msa1459870-mRNA-1
Gene Sequence

>Msa1459870

ATGGAGGATTCTTCTTCTGCAGCTGAAGATACCAAGAGTTGTCCACGTGGTCACTGGCGACCCGCTGAAGATGAAAAACTTCGTCAACTTGTTGAACAATATGGTGCCCAGAATTGGAATTCAATTGCTGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGGTGGTTCAATCAGCTAGATCCAAGAATTAACAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGACTACTTGCGGCTCATCGGATTCACGGGAACAAATGGGCACTAATAGCAAGACTTTTCCCTGGTAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCTAGAAAACAAAGGGAACAATCCAAGTTATGTGGCAAGAGAAGTTTTCAAGAAGTTTTTTCTAACTCCTCTATACTTAATTTCCCTTACACAACGAGAATTGGATATGAGAATGGAAGATTCTATGATAATACACCTTCTAGTTCTCTTGCCTCTTGGAATTTTGCTTCTATGTCAACAACAACAACAACAAACACTACTACTGCTGCTACTATTTTACCTGATAATTGCATCACAAGAAAAGGATCTAATATTTATAAA
Protein sequence

>Msa1459870

MEDSSSAAEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQEVFSNSSILNFPYTTRIGYENGRFYDNTPSSSLASWNFASMSTTTTTNTTTAATILPDNCITRKGSNIYK