Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383720 | XP_003603775.1 | 92.260 | 323 | 20 | 2 | 1 | 319 | 1 | 322 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383720 | sp|Q7ZUC7|PGES2_DANRE | 43.854 | 301 | 120 | 8 | 64 | 315 | 77 | 377 | 2.92e-74 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383720 | G7J598 | 92.260 | 323 | 20 | 2 | 1 | 319 | 1 | 322 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0523040 | Msa1383720 | 0.894218 | 3.033414e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383720 | MtrunA17_Chr3g0142901 | 92.260 | 323 | 20 | 2 | 1 | 319 | 1 | 322 | 0.0 | 616 |
| Msa1383720 | MtrunA17_Chr6g0478371 | 65.637 | 259 | 83 | 1 | 67 | 319 | 67 | 325 | 1.67e-122 | 354 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383720 | AT5G42150.1 | 60.000 | 320 | 118 | 6 | 1 | 317 | 1 | 313 | 2.79e-129 | 371 |
Find 105 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCTGCAACAAGGTTAA+AGG | 0.172768 | tig0020612:-11638 | Msa1383720:intron |
| TTCAAAAGGGCCCTATAATT+AGG | 0.178740 | tig0020612:+9232 | None:intergenic |
| TTCTACTTATGCACTCATTC+TGG | 0.244607 | tig0020612:+9523 | None:intergenic |
| TCTAAGCGAGTTTCAACTTA+TGG | 0.245710 | tig0020612:-9496 | Msa1383720:three_prime_UTR |
| AAATGGTTCCGGCAGGGTTT+AGG | 0.245806 | tig0020612:+12004 | None:intergenic |
| CTACCTCCGTCCCTAATTAT+AGG | 0.246694 | tig0020612:-9243 | Msa1383720:three_prime_UTR |
| GCAGCGACGTCATCGGATTT+AGG | 0.257070 | tig0020612:-11778 | Msa1383720:CDS |
| TTAGCAGATCTTGCTGTCTT+TGG | 0.282368 | tig0020612:-9650 | Msa1383720:CDS |
| AATGGTTCCGGCAGGGTTTA+GGG | 0.297798 | tig0020612:+12005 | None:intergenic |
| TCAAAAGGGCCCTATAATTA+GGG | 0.298798 | tig0020612:+9233 | None:intergenic |
| ACAGCAAGATCTGCTAAATT+AGG | 0.304403 | tig0020612:+9656 | None:intergenic |
| GAACAATTGGTTGATTCTTC+AGG | 0.311379 | tig0020612:-11392 | Msa1383720:intron |
| CGCAGTGGAGTTGGCTCTTA+AGG | 0.323747 | tig0020612:+11904 | None:intergenic |
| TGAACAAGAAAGAGATTAAT+TGG | 0.326433 | tig0020612:-11454 | Msa1383720:CDS |
| GGGTTAGTTGAAGTCAAATA+TGG | 0.327626 | tig0020612:+11848 | None:intergenic |
| TTGAAGGGCCGAAAATTTCT+TGG | 0.349657 | tig0020612:-9804 | Msa1383720:intron |
| GTTCTGATCCTCTTGCTTTG+AGG | 0.358054 | tig0020612:+11711 | None:intergenic |
| CGAGTTTCAACTTATGGATA+AGG | 0.368526 | tig0020612:-9490 | Msa1383720:three_prime_UTR |
| GAAACAGTTCGATATATGTT+TGG | 0.369362 | tig0020612:+10688 | None:intergenic |
| CCCATTCGCCACCTCAAATC+AGG | 0.378281 | tig0020612:-9617 | Msa1383720:CDS |
| GAGAGGTTAGTGGCTAAGTA+TGG | 0.381448 | tig0020612:-9933 | Msa1383720:CDS |
| TGTTCTATTATTCATTATCA+TGG | 0.386374 | tig0020612:-9389 | Msa1383720:three_prime_UTR |
| TACCTCCGTCCCTAATTATA+GGG | 0.387452 | tig0020612:-9242 | Msa1383720:three_prime_UTR |
| AGCACACAAGGATTGGGAAT+TGG | 0.394438 | tig0020612:-9580 | Msa1383720:CDS |
| CACTGTTGATGGTGAACAAT+TGG | 0.398212 | tig0020612:-11405 | Msa1383720:CDS |
| GTTAGACATAATTGATAAGT+TGG | 0.398968 | tig0020612:-11277 | Msa1383720:intron |
| GACAACAATCGCGATGGAAA+TGG | 0.403432 | tig0020612:+11987 | None:intergenic |
| TCTGCATTCAAGTCATAATC+TGG | 0.405560 | tig0020612:+11240 | None:intergenic |
| ATTTCCATCGCGATTGTTGT+CGG | 0.410584 | tig0020612:-11985 | Msa1383720:five_prime_UTR |
| CCATATCTTGACCTGATTTG+AGG | 0.419373 | tig0020612:+9606 | None:intergenic |
| GTCATCGGATTTAGGTATTA+CGG | 0.419523 | tig0020612:-11770 | Msa1383720:CDS |
| CCTCAAATCAGGTCAAGATA+TGG | 0.430280 | tig0020612:-9606 | Msa1383720:CDS |
| GATGAGCGTCAGGCTTTGTA+TGG | 0.432020 | tig0020612:-9852 | Msa1383720:CDS |
| ATGGTAGAGCACACAAGGAT+TGG | 0.432114 | tig0020612:-9587 | Msa1383720:CDS |
| TTAATCTCTTTCTTGTTCAT+CGG | 0.452851 | tig0020612:+11458 | None:intergenic |
| ACAGTGGGTTGAAGCTTTGA+AGG | 0.454177 | tig0020612:-9820 | Msa1383720:CDS |
| TATGTATCCAACCATGTTGT+CGG | 0.461697 | tig0020612:+9282 | None:intergenic |
| TGGTAGAGCACACAAGGATT+GGG | 0.466759 | tig0020612:-9586 | Msa1383720:CDS |
| GTGCCTATTGTCACTGTTGA+TGG | 0.471196 | tig0020612:-11416 | Msa1383720:CDS |
| ATCATGGTTGTATAATGTAT+TGG | 0.471908 | tig0020612:-9373 | Msa1383720:three_prime_UTR |
| CAGTTTATATGAGAGGTTAG+TGG | 0.472448 | tig0020612:-9943 | Msa1383720:CDS |
| TTCGATTATATCACTACTAA+AGG | 0.473403 | tig0020612:-10649 | Msa1383720:intron |
| AATAACGGGAATTAAGATAG+TGG | 0.474010 | tig0020612:-9207 | None:intergenic |
| TCACCATCAACAGTGACAAT+AGG | 0.477717 | tig0020612:+11413 | None:intergenic |
| TGCCGCCACTGCCACATCTC+CGG | 0.480271 | tig0020612:-11744 | Msa1383720:CDS |
| GGAGTTGGCTCTTAAGGCTC+TGG | 0.486808 | tig0020612:+11910 | None:intergenic |
| GGTGGAAGCCGCAGTGGAGT+TGG | 0.487473 | tig0020612:+11895 | None:intergenic |
| CAATATCACTGATGAGCGTC+AGG | 0.489719 | tig0020612:-9862 | Msa1383720:CDS |
| GAACAACAGAGGGAGTTGAT+TGG | 0.494915 | tig0020612:+11801 | None:intergenic |
| TGCTCGAGGCGGTCGGAGGA+AGG | 0.495234 | tig0020612:+11874 | None:intergenic |
| ACCTGATTTGAGGTGGCGAA+TGG | 0.495731 | tig0020612:+9616 | None:intergenic |
| ACCTTTAACCTTGTTGCAGA+AGG | 0.501255 | tig0020612:+11637 | None:intergenic |
| CGCCGGAGATGTGGCAGTGG+CGG | 0.501678 | tig0020612:+11742 | None:intergenic |
| CCAGCGTTTCTAGATTATCA+TGG | 0.503632 | tig0020612:-11509 | Msa1383720:intron |
| TAATTGATAAGTTGGTCAAA+AGG | 0.506338 | tig0020612:-11269 | Msa1383720:CDS |
| CATAATGTTCTGTAAAATCC+AGG | 0.510746 | tig0020612:-9337 | Msa1383720:three_prime_UTR |
| TATTGTTGTTTATATATACC+TGG | 0.514377 | tig0020612:+9319 | None:intergenic |
| TCTGAGATGGAAAATGCAGT+TGG | 0.518885 | tig0020612:-9554 | Msa1383720:CDS |
| GATGGAAAATGCAGTTGGAC+AGG | 0.523361 | tig0020612:-9549 | Msa1383720:CDS |
| GCTTTGAGGTCTTGTTGCGC+CGG | 0.525634 | tig0020612:+11725 | None:intergenic |
| GGCTCTTAAGGCTCTGGCAA+TGG | 0.525688 | tig0020612:+11916 | None:intergenic |
| AGAAGCAAACTTATTTAATG+TGG | 0.530184 | tig0020612:+9449 | None:intergenic |
| AATCGCGATGGAAATGGTTC+CGG | 0.532097 | tig0020612:+11993 | None:intergenic |
| GTTGTTCGCAGCGACGTCAT+CGG | 0.536710 | tig0020612:-11785 | Msa1383720:CDS |
| GTATGGAGCTGCTGAACAGT+GGG | 0.539220 | tig0020612:-9835 | Msa1383720:CDS |
| AACAGAGGGAGTTGATTGGT+TGG | 0.543179 | tig0020612:+11805 | None:intergenic |
| CCTGATTTGAGGTGGCGAAT+GGG | 0.543385 | tig0020612:+9617 | None:intergenic |
| GTCTTGTTGCGCCGGAGATG+TGG | 0.543499 | tig0020612:+11733 | None:intergenic |
| GCAATTTCAGTTTATATGAG+AGG | 0.544710 | tig0020612:-9950 | Msa1383720:CDS |
| GGTTAGTGGCTAAGTATGGT+GGG | 0.551859 | tig0020612:-9929 | Msa1383720:CDS |
| TGTATGGAGCTGCTGAACAG+TGG | 0.557881 | tig0020612:-9836 | Msa1383720:CDS |
| CCTTTAACCTTGTTGCAGAA+GGG | 0.563167 | tig0020612:+11638 | None:intergenic |
| GCGATGGAAATGGTTCCGGC+AGG | 0.567081 | tig0020612:+11997 | None:intergenic |
| GAGCTGCTCGAGGCGGTCGG+AGG | 0.571364 | tig0020612:+11870 | None:intergenic |
| AGGTTAGTGGCTAAGTATGG+TGG | 0.582553 | tig0020612:-9930 | Msa1383720:CDS |
| TAATTGGTCTCATTACAAGA+AGG | 0.583029 | tig0020612:-11438 | Msa1383720:CDS |
| TCTCTTAGACACGAAATACA+TGG | 0.584697 | tig0020612:+9899 | None:intergenic |
| ATGGAGCTGCTCGAGGCGGT+CGG | 0.588493 | tig0020612:+11867 | None:intergenic |
| TCGAGGCGGTCGGAGGAAGG+TGG | 0.590975 | tig0020612:+11877 | None:intergenic |
| AGCTTGTCCCTTCTGCAACA+AGG | 0.592945 | tig0020612:-11645 | Msa1383720:CDS |
| GTCAAATATGGAGCTGCTCG+AGG | 0.596084 | tig0020612:+11860 | None:intergenic |
| CAGTGGGTTGAAGCTTTGAA+GGG | 0.598125 | tig0020612:-9819 | Msa1383720:CDS |
| GAGGAAGGTGGAAGCCGCAG+TGG | 0.599666 | tig0020612:+11889 | None:intergenic |
| AAGATATGGTAGAGCACACA+AGG | 0.602564 | tig0020612:-9592 | Msa1383720:CDS |
| CGATGGAAATGGTTCCGGCA+GGG | 0.603446 | tig0020612:+11998 | None:intergenic |
| ATGCAGATGAAGAAAAGAAG+TGG | 0.611944 | tig0020612:-11224 | Msa1383720:CDS |
| TAGGTGGGTAGATAATTACT+TGG | 0.612931 | tig0020612:-10725 | Msa1383720:CDS |
| ATCACCGACAACAATCGCGA+TGG | 0.615811 | tig0020612:+11981 | None:intergenic |
| ACGTCGCTGCGAACAACAGA+GGG | 0.620026 | tig0020612:+11791 | None:intergenic |
| CAACAAGACCTCAAAGCAAG+AGG | 0.620653 | tig0020612:-11719 | Msa1383720:CDS |
| GATAAAACCCTAAACCCTGC+CGG | 0.623297 | tig0020612:-12012 | Msa1383720:five_prime_UTR |
| TGGTATTCAGTACAAAGTGG+TGG | 0.629118 | tig0020612:-11489 | Msa1383720:CDS |
| TTGCGCCGGAGATGTGGCAG+TGG | 0.629506 | tig0020612:+11739 | None:intergenic |
| GGTTGGATACATACAAGTGT+AGG | 0.631928 | tig0020612:-9272 | Msa1383720:three_prime_UTR |
| ACTGAGCTAGCAAGAATGAG+AGG | 0.632041 | tig0020612:-11956 | Msa1383720:exon |
| TATCTTGACCTGATTTGAGG+TGG | 0.632748 | tig0020612:+9609 | None:intergenic |
| GTTAGTGGCTAAGTATGGTG+GGG | 0.646752 | tig0020612:-9928 | Msa1383720:CDS |
| AAGGGCCCTATAATTAGGGA+CGG | 0.650133 | tig0020612:+9237 | None:intergenic |
| TATAATGTATTGGTGATCTG+TGG | 0.657602 | tig0020612:-9363 | Msa1383720:three_prime_UTR |
| GCAAGAATGAGAGGACTCAA+CGG | 0.662333 | tig0020612:-11947 | Msa1383720:exon |
| GACGTCGCTGCGAACAACAG+AGG | 0.662716 | tig0020612:+11790 | None:intergenic |
| GGCCCTATAATTAGGGACGG+AGG | 0.677496 | tig0020612:+9240 | None:intergenic |
| TCATGGTATTCAGTACAAAG+TGG | 0.680108 | tig0020612:-11492 | Msa1383720:CDS |
| AAATATGGAGCTGCTCGAGG+CGG | 0.687546 | tig0020612:+11863 | None:intergenic |
| CTTAAGAGCCAACTCCACTG+CGG | 0.786495 | tig0020612:-11903 | Msa1383720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTTTTTTAGTTAAAATA+CGG | - | tig0020612:10097-10116 | Msa1383720:intron | 10.0% |
| !!! | TTTTTTCTTCCTTTTTATAT+TGG | - | tig0020612:10409-10428 | Msa1383720:intron | 15.0% |
| !! | AATAATCATTTGATAAATCA+AGG | + | tig0020612:10463-10482 | None:intergenic | 15.0% |
| !!! | GTTATCAGATATATTTTTTT+TGG | + | tig0020612:10733-10752 | None:intergenic | 15.0% |
| !!! | ATTTGTTGATATTATAACAA+TGG | - | tig0020612:10779-10798 | Msa1383720:intron | 15.0% |
| !! | TTTGTTGATATTATAACAAT+GGG | - | tig0020612:10780-10799 | Msa1383720:intron | 15.0% |
| !! | AATATACAATAAACCACAAA+TGG | + | tig0020612:9884-9903 | None:intergenic | 20.0% |
| !! | ATCAATTATGTCTAACAAAA+GGG | + | tig0020612:9945-9964 | None:intergenic | 20.0% |
| !! | TATCAATTATGTCTAACAAA+AGG | + | tig0020612:9946-9965 | None:intergenic | 20.0% |
| !!! | AGATTAAGTACATATGATTT+TGG | - | tig0020612:10437-10456 | Msa1383720:intron | 20.0% |
| !! | AAGTTATCAGATCTTAAAAA+AGG | + | tig0020612:10704-10723 | None:intergenic | 20.0% |
| !!! | TGTTACATTCAGTTATTTTA+TGG | - | tig0020612:10754-10773 | Msa1383720:intron | 20.0% |
| !! | GATAAATATTGCTTCATAAA+AGG | + | tig0020612:11151-11170 | None:intergenic | 20.0% |
| !! | AATATTTATCAACCATTACA+AGG | - | tig0020612:11161-11180 | Msa1383720:intron | 20.0% |
| !! | ATATTTATCAACCATTACAA+GGG | - | tig0020612:11162-11181 | Msa1383720:intron | 20.0% |
| !! | TGTTCTATTATTCATTATCA+TGG | - | tig0020612:11837-11856 | Msa1383720:CDS | 20.0% |
| !!! | TATTGTTGTTTATATATACC+TGG | + | tig0020612:11910-11929 | None:intergenic | 20.0% |
| ! | TGAAAAAGAACAACTTCTTT+GGG | + | tig0020612:9555-9574 | None:intergenic | 25.0% |
| ! | TTGAAAAAGAACAACTTCTT+TGG | + | tig0020612:9556-9575 | None:intergenic | 25.0% |
| ! | GGAAAAAATGCAAAAACAAT+AGG | + | tig0020612:9696-9715 | None:intergenic | 25.0% |
| ! | TTAATCTCTTTCTTGTTCAT+CGG | + | tig0020612:9771-9790 | None:intergenic | 25.0% |
| ! | TGAACAAGAAAGAGATTAAT+TGG | - | tig0020612:9772-9791 | Msa1383720:intron | 25.0% |
| ! | TCAATTATGTCTAACAAAAG+GGG | + | tig0020612:9944-9963 | None:intergenic | 25.0% |
| ! | GTTAGACATAATTGATAAGT+TGG | - | tig0020612:9949-9968 | Msa1383720:CDS | 25.0% |
| !!! | TAATTGATAAGTTGGTCAAA+AGG | - | tig0020612:9957-9976 | Msa1383720:intron | 25.0% |
| ! | GTTCAAATAAACAAGAAGAA+AGG | + | tig0020612:10059-10078 | None:intergenic | 25.0% |
| ! | TAACTAAAAAAGATAGCTAG+AGG | + | tig0020612:10092-10111 | None:intergenic | 25.0% |
| ! | TTTGTAATCGATCTCTAAAT+CGG | + | tig0020612:10247-10266 | None:intergenic | 25.0% |
| ! | ACTACTAAAAATTCTCTACT+TGG | + | tig0020612:10305-10324 | None:intergenic | 25.0% |
| ! | ATCTTGCATCCAATATAAAA+AGG | + | tig0020612:10421-10440 | None:intergenic | 25.0% |
| ! | TTCGATTATATCACTACTAA+AGG | - | tig0020612:10577-10596 | Msa1383720:intron | 25.0% |
| ! | TTATATCACTACTAAAGGTA+AGG | - | tig0020612:10582-10601 | Msa1383720:intron | 25.0% |
| ! | TTAATATTTGATGAATCAGG+AGG | + | tig0020612:10847-10866 | None:intergenic | 25.0% |
| ! | AGCTTAATATTTGATGAATC+AGG | + | tig0020612:10850-10869 | None:intergenic | 25.0% |
| !!! | TAGAGTTATTTTTCAAACTG+AGG | + | tig0020612:11064-11083 | None:intergenic | 25.0% |
| ! | ATAAAGAGCAGAAATAGAAA+AGG | + | tig0020612:11227-11246 | None:intergenic | 25.0% |
| !! | TGAACATACCAAGAAATTTT+CGG | + | tig0020612:11433-11452 | None:intergenic | 25.0% |
| ! | GTATCATATCTCAGTTATTA+TGG | + | tig0020612:11466-11485 | None:intergenic | 25.0% |
| ! | TCACAAATATAAGCACTTAA+GGG | + | tig0020612:11529-11548 | None:intergenic | 25.0% |
| ! | TTCACAAATATAAGCACTTA+AGG | + | tig0020612:11530-11549 | None:intergenic | 25.0% |
| !! | GTGCTTATATTTGTGAATTT+TGG | - | tig0020612:11533-11552 | Msa1383720:intron | 25.0% |
| !!! | TTATATTTGTGAATTTTGGC+AGG | - | tig0020612:11537-11556 | Msa1383720:intron | 25.0% |
| ! | AGAAGCAAACTTATTTAATG+TGG | + | tig0020612:11780-11799 | None:intergenic | 25.0% |
| ! | ATCATGGTTGTATAATGTAT+TGG | - | tig0020612:11853-11872 | Msa1383720:CDS | 25.0% |
| !!! | TTCCCGTTATTTTTTCAAAA+GGG | + | tig0020612:12010-12029 | None:intergenic | 25.0% |
| !!! | ATTCCCGTTATTTTTTCAAA+AGG | + | tig0020612:12011-12030 | None:intergenic | 25.0% |
| AGTAACGTTTAATCGTGTTA+AGG | + | tig0020612:9638-9657 | None:intergenic | 30.0% | |
| ! | TAATTGGTCTCATTACAAGA+AGG | - | tig0020612:9788-9807 | Msa1383720:intron | 30.0% |
| CTTGTTCATATTTCCATTTG+TGG | - | tig0020612:9868-9887 | Msa1383720:CDS | 30.0% | |
| CAATTATGTCTAACAAAAGG+GGG | + | tig0020612:9943-9962 | None:intergenic | 30.0% | |
| CAAGAAGAAAGGATTAGAAA+AGG | + | tig0020612:10048-10067 | None:intergenic | 30.0% | |
| CTACATAGACTGAAATATTC+CGG | - | tig0020612:10276-10295 | Msa1383720:intron | 30.0% | |
| ! | CAATTGCAATCTAAAACCAT+GGG | - | tig0020612:10343-10362 | Msa1383720:intron | 30.0% |
| AATAATCTCATAAATGCCCA+TGG | + | tig0020612:10362-10381 | None:intergenic | 30.0% | |
| TGGGCATTTATGAGATTATT+AGG | - | tig0020612:10362-10381 | Msa1383720:intron | 30.0% | |
| TTATGAGATTATTAGGAGTC+TGG | - | tig0020612:10369-10388 | Msa1383720:intron | 30.0% | |
| !! | TTTGCTGTGACTTGTTATAT+AGG | - | tig0020612:10482-10501 | Msa1383720:intron | 30.0% |
| GAAACAGTTCGATATATGTT+TGG | + | tig0020612:10541-10560 | None:intergenic | 30.0% | |
| AAAGGAATTATCTTCGCATT+TGG | + | tig0020612:10686-10705 | None:intergenic | 30.0% | |
| CATCAAATATTAAGCTGTCT+TGG | - | tig0020612:10854-10873 | Msa1383720:intron | 30.0% | |
| AACATACAGCTTTACAAACA+TGG | + | tig0020612:10917-10936 | None:intergenic | 30.0% | |
| !! | GTAAAGCTGTATGTTTTGAA+AGG | - | tig0020612:10922-10941 | Msa1383720:intron | 30.0% |
| GAAAATACTTCTCTCTCTAA+AGG | + | tig0020612:10988-11007 | None:intergenic | 30.0% | |
| AAAAGTAATCACCCTTGTAA+TGG | + | tig0020612:11176-11195 | None:intergenic | 30.0% | |
| GCAATTTCAGTTTATATGAG+AGG | - | tig0020612:11276-11295 | Msa1383720:intron | 30.0% | |
| ! | TATAATGTATTGGTGATCTG+TGG | - | tig0020612:11863-11882 | Msa1383720:CDS | 30.0% |
| CATAATGTTCTGTAAAATCC+AGG | - | tig0020612:11889-11908 | Msa1383720:CDS | 30.0% | |
| !! | GGGTTAGTTGAAGTCAAATA+TGG | + | tig0020612:9381-9400 | None:intergenic | 35.0% |
| GTCATCGGATTTAGGTATTA+CGG | - | tig0020612:9456-9475 | Msa1383720:three_prime_UTR | 35.0% | |
| TCATGGTATTCAGTACAAAG+TGG | - | tig0020612:9734-9753 | Msa1383720:intron | 35.0% | |
| ! | GAACAATTGGTTGATTCTTC+AGG | - | tig0020612:9834-9853 | Msa1383720:CDS | 35.0% |
| TCTGCATTCAAGTCATAATC+TGG | + | tig0020612:9989-10008 | None:intergenic | 35.0% | |
| ATGCAGATGAAGAAAAGAAG+TGG | - | tig0020612:10002-10021 | Msa1383720:intron | 35.0% | |
| TTAAAACCTTAGAAGAGCAG+TGG | + | tig0020612:10134-10153 | None:intergenic | 35.0% | |
| ! | AAAATTCTCTACTTGGTGAC+CGG | + | tig0020612:10298-10317 | None:intergenic | 35.0% |
| ! | GCAATTGCAATCTAAAACCA+TGG | - | tig0020612:10342-10361 | Msa1383720:intron | 35.0% |
| !! | CTGTGACTTGTTATATAGGT+GGG | - | tig0020612:10486-10505 | Msa1383720:intron | 35.0% |
| TAGGTGGGTAGATAATTACT+TGG | - | tig0020612:10501-10520 | Msa1383720:intron | 35.0% | |
| TGTATATTAAGCTGTCTCTG+TGG | - | tig0020612:10804-10823 | Msa1383720:intron | 35.0% | |
| AAACATGGCTCAGTTGAATA+TGG | + | tig0020612:10902-10921 | None:intergenic | 35.0% | |
| CAGTTTATATGAGAGGTTAG+TGG | - | tig0020612:11283-11302 | Msa1383720:intron | 35.0% | |
| TCTCTTAGACACGAAATACA+TGG | + | tig0020612:11330-11349 | None:intergenic | 35.0% | |
| TATAAGCACTTAAGGGTTAC+AGG | + | tig0020612:11522-11541 | None:intergenic | 35.0% | |
| ACAGCAAGATCTGCTAAATT+AGG | + | tig0020612:11573-11592 | None:intergenic | 35.0% | |
| TTCTACTTATGCACTCATTC+TGG | + | tig0020612:11706-11725 | None:intergenic | 35.0% | |
| TCTAAGCGAGTTTCAACTTA+TGG | - | tig0020612:11730-11749 | Msa1383720:CDS | 35.0% | |
| CGAGTTTCAACTTATGGATA+AGG | - | tig0020612:11736-11755 | Msa1383720:CDS | 35.0% | |
| CCATGTTGTCGGAAAAAAAA+AGG | + | tig0020612:11936-11955 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTTTTCCGACAACA+TGG | - | tig0020612:11933-11952 | Msa1383720:CDS | 35.0% |
| !!! | TTTTTTTCCGACAACATGGT+TGG | - | tig0020612:11937-11956 | Msa1383720:CDS | 35.0% |
| TATGTATCCAACCATGTTGT+CGG | + | tig0020612:11947-11966 | None:intergenic | 35.0% | |
| TCAAAAGGGCCCTATAATTA+GGG | + | tig0020612:11996-12015 | None:intergenic | 35.0% | |
| TTCAAAAGGGCCCTATAATT+AGG | + | tig0020612:11997-12016 | None:intergenic | 35.0% | |
| !! | GGGCCCTTTTGAAAAAATAA+CGG | - | tig0020612:12004-12023 | Msa1383720:five_prime_UTR | 35.0% |
| !! | GGCCCTTTTGAAAAAATAAC+GGG | - | tig0020612:12005-12024 | Msa1383720:five_prime_UTR | 35.0% |
| ATTTCCATCGCGATTGTTGT+CGG | - | tig0020612:9241-9260 | Msa1383720:three_prime_UTR | 40.0% | |
| ! | AGCGATCAACGAGATTTTGA+GGG | + | tig0020612:9401-9420 | None:intergenic | 40.0% |
| CCTTTAACCTTGTTGCAGAA+GGG | + | tig0020612:9591-9610 | None:intergenic | 40.0% | |
| ACCTTTAACCTTGTTGCAGA+AGG | + | tig0020612:9592-9611 | None:intergenic | 40.0% | |
| TGATAATCTAGAAACGCTGG+AGG | + | tig0020612:9717-9736 | None:intergenic | 40.0% | |
| CCATGATAATCTAGAAACGC+TGG | + | tig0020612:9720-9739 | None:intergenic | 40.0% | |
| ! | CCAGCGTTTCTAGATTATCA+TGG | - | tig0020612:9717-9736 | Msa1383720:intron | 40.0% |
| TGGTATTCAGTACAAAGTGG+TGG | - | tig0020612:9737-9756 | Msa1383720:intron | 40.0% | |
| TCACCATCAACAGTGACAAT+AGG | + | tig0020612:9816-9835 | None:intergenic | 40.0% | |
| !! | CACTGTTGATGGTGAACAAT+TGG | - | tig0020612:9821-9840 | Msa1383720:CDS | 40.0% |
| TTTGATGCTGTAGAGAGTTG+TGG | - | tig0020612:10160-10179 | Msa1383720:intron | 40.0% | |
| !! | GCTGTGACTTGTTATATAGG+TGG | - | tig0020612:10485-10504 | Msa1383720:intron | 40.0% |
| TCGCATTTGGAAAATGACAG+AGG | + | tig0020612:10673-10692 | None:intergenic | 40.0% | |
| !! | TTTTGAAAGGATACCAGTCG+AGG | - | tig0020612:10935-10954 | Msa1383720:intron | 40.0% |
| TTTGAAAGGATACCAGTCGA+GGG | - | tig0020612:10936-10955 | Msa1383720:intron | 40.0% | |
| AAAAGCAAGAACTTGGAGTG+AGG | + | tig0020612:11038-11057 | None:intergenic | 40.0% | |
| GAGGATGAAAAGCAAGAACT+TGG | + | tig0020612:11045-11064 | None:intergenic | 40.0% | |
| AACTGAGTACGAAAAGCAAG+AGG | + | tig0020612:11100-11119 | None:intergenic | 40.0% | |
| AGGAAGACAGCAGACAATAA+GGG | + | tig0020612:11207-11226 | None:intergenic | 40.0% | |
| AAGGAAGACAGCAGACAATA+AGG | + | tig0020612:11208-11227 | None:intergenic | 40.0% | |
| TCCTGAAGTCTATCATGCTA+TGG | - | tig0020612:11246-11265 | Msa1383720:CDS | 40.0% | |
| TCCATAGCATGATAGACTTC+AGG | + | tig0020612:11250-11269 | None:intergenic | 40.0% | |
| TCTATCATGCTATGGAGTGT+AGG | - | tig0020612:11254-11273 | Msa1383720:CDS | 40.0% | |
| TTGAAGGGCCGAAAATTTCT+TGG | - | tig0020612:11422-11441 | Msa1383720:CDS | 40.0% | |
| TTAAGGGTTACAGGTCTTCA+AGG | + | tig0020612:11513-11532 | None:intergenic | 40.0% | |
| !! | GTGAATTTTGGCAGGTGATT+TGG | - | tig0020612:11545-11564 | Msa1383720:intron | 40.0% |
| ! | TTAGCAGATCTTGCTGTCTT+TGG | - | tig0020612:11576-11595 | Msa1383720:intron | 40.0% |
| ! | TATCTTGACCTGATTTGAGG+TGG | + | tig0020612:11620-11639 | None:intergenic | 40.0% |
| ! | CCATATCTTGACCTGATTTG+AGG | + | tig0020612:11623-11642 | None:intergenic | 40.0% |
| CCTCAAATCAGGTCAAGATA+TGG | - | tig0020612:11620-11639 | Msa1383720:intron | 40.0% | |
| AAGATATGGTAGAGCACACA+AGG | - | tig0020612:11634-11653 | Msa1383720:intron | 40.0% | |
| !!! | TGGGAATTGGTTTTCTGAGA+TGG | - | tig0020612:11659-11678 | Msa1383720:CDS | 40.0% |
| ! | TCTGAGATGGAAAATGCAGT+TGG | - | tig0020612:11672-11691 | Msa1383720:CDS | 40.0% |
| GGTTGGATACATACAAGTGT+AGG | - | tig0020612:11954-11973 | Msa1383720:exon | 40.0% | |
| TACCTCCGTCCCTAATTATA+GGG | - | tig0020612:11984-12003 | Msa1383720:five_prime_UTR | 40.0% | |
| GATAAAACCCTAAACCCTGC+CGG | - | tig0020612:9214-9233 | Msa1383720:three_prime_UTR | 45.0% | |
| AATCGCGATGGAAATGGTTC+CGG | + | tig0020612:9236-9255 | None:intergenic | 45.0% | |
| GACAACAATCGCGATGGAAA+TGG | + | tig0020612:9242-9261 | None:intergenic | 45.0% | |
| ACTGAGCTAGCAAGAATGAG+AGG | - | tig0020612:9270-9289 | Msa1383720:three_prime_UTR | 45.0% | |
| GCAAGAATGAGAGGACTCAA+CGG | - | tig0020612:9279-9298 | Msa1383720:three_prime_UTR | 45.0% | |
| ! | GAGCGATCAACGAGATTTTG+AGG | + | tig0020612:9402-9421 | None:intergenic | 45.0% |
| ! | AACAGAGGGAGTTGATTGGT+TGG | + | tig0020612:9424-9443 | None:intergenic | 45.0% |
| ! | GAACAACAGAGGGAGTTGAT+TGG | + | tig0020612:9428-9447 | None:intergenic | 45.0% |
| CAACAAGACCTCAAAGCAAG+AGG | - | tig0020612:9507-9526 | Msa1383720:three_prime_UTR | 45.0% | |
| GTTCTGATCCTCTTGCTTTG+AGG | + | tig0020612:9518-9537 | None:intergenic | 45.0% | |
| CCCTTCTGCAACAAGGTTAA+AGG | - | tig0020612:9588-9607 | Msa1383720:CDS | 45.0% | |
| GTGCCTATTGTCACTGTTGA+TGG | - | tig0020612:9810-9829 | Msa1383720:CDS | 45.0% | |
| CTTGTACCACTGCTCTTCTA+AGG | - | tig0020612:10125-10144 | Msa1383720:intron | 45.0% | |
| GAGAGGTTAGTGGCTAAGTA+TGG | - | tig0020612:11293-11312 | Msa1383720:intron | 45.0% | |
| AGGTTAGTGGCTAAGTATGG+TGG | - | tig0020612:11296-11315 | Msa1383720:intron | 45.0% | |
| GGTTAGTGGCTAAGTATGGT+GGG | - | tig0020612:11297-11316 | Msa1383720:intron | 45.0% | |
| GTTAGTGGCTAAGTATGGTG+GGG | - | tig0020612:11298-11317 | Msa1383720:intron | 45.0% | |
| CAATATCACTGATGAGCGTC+AGG | - | tig0020612:11364-11383 | Msa1383720:intron | 45.0% | |
| !! | ACAGTGGGTTGAAGCTTTGA+AGG | - | tig0020612:11406-11425 | Msa1383720:CDS | 45.0% |
| !! | CAGTGGGTTGAAGCTTTGAA+GGG | - | tig0020612:11407-11426 | Msa1383720:CDS | 45.0% |
| ATGGTAGAGCACACAAGGAT+TGG | - | tig0020612:11639-11658 | Msa1383720:CDS | 45.0% | |
| TGGTAGAGCACACAAGGATT+GGG | - | tig0020612:11640-11659 | Msa1383720:CDS | 45.0% | |
| AGCACACAAGGATTGGGAAT+TGG | - | tig0020612:11646-11665 | Msa1383720:CDS | 45.0% | |
| GATGGAAAATGCAGTTGGAC+AGG | - | tig0020612:11677-11696 | Msa1383720:CDS | 45.0% | |
| CTACCTCCGTCCCTAATTAT+AGG | - | tig0020612:11983-12002 | Msa1383720:five_prime_UTR | 45.0% | |
| AAGGGCCCTATAATTAGGGA+CGG | + | tig0020612:11992-12011 | None:intergenic | 45.0% | |
| AATGGTTCCGGCAGGGTTTA+GGG | + | tig0020612:9224-9243 | None:intergenic | 50.0% | |
| AAATGGTTCCGGCAGGGTTT+AGG | + | tig0020612:9225-9244 | None:intergenic | 50.0% | |
| ATCACCGACAACAATCGCGA+TGG | + | tig0020612:9248-9267 | None:intergenic | 50.0% | |
| CTTAAGAGCCAACTCCACTG+CGG | - | tig0020612:9323-9342 | Msa1383720:three_prime_UTR | 50.0% | |
| AAATATGGAGCTGCTCGAGG+CGG | + | tig0020612:9366-9385 | None:intergenic | 50.0% | |
| GTCAAATATGGAGCTGCTCG+AGG | + | tig0020612:9369-9388 | None:intergenic | 50.0% | |
| AGCTTGTCCCTTCTGCAACA+AGG | - | tig0020612:9581-9600 | Msa1383720:CDS | 50.0% | |
| AGAAAAGAAGTGGCGCGAGT+AGG | - | tig0020612:10012-10031 | Msa1383720:intron | 50.0% | |
| AAATACCTCTCTCCCTCGAC+TGG | + | tig0020612:10951-10970 | None:intergenic | 50.0% | |
| ! | GATGAGCGTCAGGCTTTGTA+TGG | - | tig0020612:11374-11393 | Msa1383720:intron | 50.0% |
| TGTATGGAGCTGCTGAACAG+TGG | - | tig0020612:11390-11409 | Msa1383720:intron | 50.0% | |
| GTATGGAGCTGCTGAACAGT+GGG | - | tig0020612:11391-11410 | Msa1383720:intron | 50.0% | |
| ! | CCTGATTTGAGGTGGCGAAT+GGG | + | tig0020612:11612-11631 | None:intergenic | 50.0% |
| ! | ACCTGATTTGAGGTGGCGAA+TGG | + | tig0020612:11613-11632 | None:intergenic | 50.0% |
| CGATGGAAATGGTTCCGGCA+GGG | + | tig0020612:9231-9250 | None:intergenic | 55.0% | |
| ! | GGCTCTTAAGGCTCTGGCAA+TGG | + | tig0020612:9313-9332 | None:intergenic | 55.0% |
| ! | GGAGTTGGCTCTTAAGGCTC+TGG | + | tig0020612:9319-9338 | None:intergenic | 55.0% |
| ! | CGCAGTGGAGTTGGCTCTTA+AGG | + | tig0020612:9325-9344 | None:intergenic | 55.0% |
| ACGTCGCTGCGAACAACAGA+GGG | + | tig0020612:9438-9457 | None:intergenic | 55.0% | |
| GTTGTTCGCAGCGACGTCAT+CGG | - | tig0020612:9441-9460 | Msa1383720:three_prime_UTR | 55.0% | |
| GCAGCGACGTCATCGGATTT+AGG | - | tig0020612:9448-9467 | Msa1383720:three_prime_UTR | 55.0% | |
| !! | GCTTTGAGGTCTTGTTGCGC+CGG | + | tig0020612:9504-9523 | None:intergenic | 55.0% |
| CCCATTCGCCACCTCAAATC+AGG | - | tig0020612:11609-11628 | Msa1383720:intron | 55.0% | |
| GGCCCTATAATTAGGGACGG+AGG | + | tig0020612:11989-12008 | None:intergenic | 55.0% | |
| GCGATGGAAATGGTTCCGGC+AGG | + | tig0020612:9232-9251 | None:intergenic | 60.0% | |
| GACGTCGCTGCGAACAACAG+AGG | + | tig0020612:9439-9458 | None:intergenic | 60.0% | |
| ! | GTCTTGTTGCGCCGGAGATG+TGG | + | tig0020612:9496-9515 | None:intergenic | 60.0% |
| GGATACCAGTCGAGGGAGAG+AGG | - | tig0020612:10943-10962 | Msa1383720:intron | 60.0% | |
| GGTGGAAGCCGCAGTGGAGT+TGG | + | tig0020612:9334-9353 | None:intergenic | 65.0% | |
| GAGGAAGGTGGAAGCCGCAG+TGG | + | tig0020612:9340-9359 | None:intergenic | 65.0% | |
| ATGGAGCTGCTCGAGGCGGT+CGG | + | tig0020612:9362-9381 | None:intergenic | 65.0% | |
| TGCCGCCACTGCCACATCTC+CGG | - | tig0020612:9482-9501 | Msa1383720:three_prime_UTR | 65.0% | |
| TTGCGCCGGAGATGTGGCAG+TGG | + | tig0020612:9490-9509 | None:intergenic | 65.0% | |
| TCGAGGCGGTCGGAGGAAGG+TGG | + | tig0020612:9352-9371 | None:intergenic | 70.0% | |
| TGCTCGAGGCGGTCGGAGGA+AGG | + | tig0020612:9355-9374 | None:intergenic | 70.0% | |
| CGCCGGAGATGTGGCAGTGG+CGG | + | tig0020612:9487-9506 | None:intergenic | 70.0% | |
| GAGCTGCTCGAGGCGGTCGG+AGG | + | tig0020612:9359-9378 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020612 | gene | 9208 | 12040 | 9208 | ID=Msa1383720;Name=Msa1383720 |
| tig0020612 | mRNA | 9208 | 12040 | 9208 | ID=Msa1383720-mRNA-1;Parent=Msa1383720;Name=Msa1383720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=77|1|1|1|1|1|6|321|319 |
| tig0020612 | exon | 9208 | 9689 | 9208 | ID=Msa1383720-mRNA-1:exon:8793;Parent=Msa1383720-mRNA-1 |
| tig0020612 | exon | 9805 | 9972 | 9805 | ID=Msa1383720-mRNA-1:exon:8792;Parent=Msa1383720-mRNA-1 |
| tig0020612 | exon | 10650 | 10744 | 10650 | ID=Msa1383720-mRNA-1:exon:8791;Parent=Msa1383720-mRNA-1 |
| tig0020612 | exon | 11219 | 11294 | 11219 | ID=Msa1383720-mRNA-1:exon:8790;Parent=Msa1383720-mRNA-1 |
| tig0020612 | exon | 11393 | 11527 | 11393 | ID=Msa1383720-mRNA-1:exon:8789;Parent=Msa1383720-mRNA-1 |
| tig0020612 | exon | 11639 | 12040 | 11639 | ID=Msa1383720-mRNA-1:exon:8788;Parent=Msa1383720-mRNA-1 |
| tig0020612 | five_prime_UTR | 11964 | 12040 | 11964 | ID=Msa1383720-mRNA-1:five_prime_utr;Parent=Msa1383720-mRNA-1 |
| tig0020612 | CDS | 11639 | 11963 | 11639 | ID=Msa1383720-mRNA-1:cds;Parent=Msa1383720-mRNA-1 |
| tig0020612 | CDS | 11393 | 11527 | 11393 | ID=Msa1383720-mRNA-1:cds;Parent=Msa1383720-mRNA-1 |
| tig0020612 | CDS | 11219 | 11294 | 11219 | ID=Msa1383720-mRNA-1:cds;Parent=Msa1383720-mRNA-1 |
| tig0020612 | CDS | 10650 | 10744 | 10650 | ID=Msa1383720-mRNA-1:cds;Parent=Msa1383720-mRNA-1 |
| tig0020612 | CDS | 9805 | 9972 | 9805 | ID=Msa1383720-mRNA-1:cds;Parent=Msa1383720-mRNA-1 |
| tig0020612 | CDS | 9529 | 9689 | 9529 | ID=Msa1383720-mRNA-1:cds;Parent=Msa1383720-mRNA-1 |
| tig0020612 | three_prime_UTR | 9208 | 9528 | 9208 | ID=Msa1383720-mRNA-1:three_prime_utr;Parent=Msa1383720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
