Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523040 | XP_003603775.1 | 91.950 | 323 | 21 | 2 | 1 | 319 | 1 | 322 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523040 | sp|Q7ZUC7|PGES2_DANRE | 43.522 | 301 | 121 | 8 | 64 | 315 | 77 | 377 | 1.11e-73 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523040 | G7J598 | 91.950 | 323 | 21 | 2 | 1 | 319 | 1 | 322 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001310 | Msa0523040 | 0.919445 | 4.460077e-87 | -8.615850e-47 |
| Msa0523040 | Msa1383720 | 0.894218 | 3.033414e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523040 | MtrunA17_Chr3g0142901 | 91.950 | 323 | 21 | 2 | 1 | 319 | 1 | 322 | 0.0 | 615 |
| Msa0523040 | MtrunA17_Chr6g0478371 | 65.637 | 259 | 83 | 1 | 67 | 319 | 67 | 325 | 2.48e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523040 | AT5G42150.1 | 60.000 | 320 | 118 | 6 | 1 | 317 | 1 | 313 | 4.04e-129 | 371 |
Find 97 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCTGCAACAAGGTTAA+AGG | 0.172768 | 3_4:-76389670 | Msa0523040:intron |
| TTCTACTTATGCACTCATTC+TGG | 0.244607 | 3_4:+76387009 | None:intergenic |
| AAATGGTTCCGGCAGGGTTT+AGG | 0.245806 | 3_4:+76390036 | None:intergenic |
| GCAGCGACGTCATCGGATTT+AGG | 0.257070 | 3_4:-76389810 | Msa0523040:CDS |
| TTAGCAGATCTTGCTGTCTT+TGG | 0.282368 | 3_4:-76387136 | Msa0523040:CDS |
| AATGGTTCCGGCAGGGTTTA+GGG | 0.297798 | 3_4:+76390037 | None:intergenic |
| ACAGCAAGATCTGCTAAATT+AGG | 0.304403 | 3_4:+76387142 | None:intergenic |
| GAACAATTGGTTGATTCTTC+AGG | 0.311379 | 3_4:-76389424 | Msa0523040:intron |
| CGCAGTGGAGTTGGCTCTTA+AGG | 0.323747 | 3_4:+76389936 | None:intergenic |
| TGAACAAGAAAGAGATTAAT+TGG | 0.326433 | 3_4:-76389486 | Msa0523040:CDS |
| GGGTTAGTTGAAGTCAAATA+TGG | 0.327626 | 3_4:+76389880 | None:intergenic |
| TTGAAGGGCCGAAAATTTCT+TGG | 0.349657 | 3_4:-76387290 | Msa0523040:intron |
| TCTAAGCGAGTTTCAACATA+TGG | 0.351564 | 3_4:-76386982 | Msa0523040:three_prime_UTR |
| GTTCTGATCCTCTTGCTTTG+AGG | 0.358054 | 3_4:+76389743 | None:intergenic |
| GAAACAGTTCGATATATGTT+TGG | 0.369362 | 3_4:+76388720 | None:intergenic |
| GAGAGGTTAGTGGCTAAGTA+TGG | 0.381448 | 3_4:-76387419 | Msa0523040:CDS |
| TGTTCTATTATTCATTATCA+TGG | 0.386374 | 3_4:-76386875 | Msa0523040:three_prime_UTR |
| AGCACACAAGGATTGGGAAT+TGG | 0.394438 | 3_4:-76387066 | Msa0523040:CDS |
| CACTGTTGATGGTGAACAAT+TGG | 0.398212 | 3_4:-76389437 | Msa0523040:CDS |
| GTTAGACATAATTGATAAGT+TGG | 0.398968 | 3_4:-76389309 | Msa0523040:intron |
| GACAACAATCGCGATGGAAA+TGG | 0.403432 | 3_4:+76390019 | None:intergenic |
| TCTGCATTCAAGTCATAATC+TGG | 0.405560 | 3_4:+76389272 | None:intergenic |
| ATTTCCATCGCGATTGTTGT+CGG | 0.410584 | 3_4:-76390017 | Msa0523040:five_prime_UTR |
| GTCATCGGATTTAGGTATTA+CGG | 0.419523 | 3_4:-76389802 | Msa0523040:CDS |
| CCTCAAGTCAGGTCAAGATA+TGG | 0.432018 | 3_4:-76387092 | Msa0523040:CDS |
| ATGGTAGAGCACACAAGGAT+TGG | 0.432114 | 3_4:-76387073 | Msa0523040:CDS |
| CCCATTCGCCACCTCAAGTC+AGG | 0.439804 | 3_4:-76387103 | Msa0523040:CDS |
| TTAATCTCTTTCTTGTTCAT+CGG | 0.452851 | 3_4:+76389490 | None:intergenic |
| ACAGTGGGTTGAAGCTTTGA+AGG | 0.454177 | 3_4:-76387306 | Msa0523040:CDS |
| CGAGTTTCAACATATGGATA+AGG | 0.460062 | 3_4:-76386976 | Msa0523040:three_prime_UTR |
| TGGTAGAGCACACAAGGATT+GGG | 0.466759 | 3_4:-76387072 | Msa0523040:CDS |
| GTGCCTATTGTCACTGTTGA+TGG | 0.471196 | 3_4:-76389448 | Msa0523040:CDS |
| ATCATGGTTGTATAATGTAT+TGG | 0.471908 | 3_4:-76386859 | Msa0523040:three_prime_UTR |
| CAGTTTATATGAGAGGTTAG+TGG | 0.472448 | 3_4:-76387429 | Msa0523040:CDS |
| TTCGATTATATCACTACTAA+AGG | 0.473403 | 3_4:-76388681 | Msa0523040:intron |
| ACCTGACTTGAGGTGGCGAA+TGG | 0.476175 | 3_4:+76387102 | None:intergenic |
| TCACCATCAACAGTGACAAT+AGG | 0.477717 | 3_4:+76389445 | None:intergenic |
| TGCCGCCACTGCCACATCTC+CGG | 0.480271 | 3_4:-76389776 | Msa0523040:CDS |
| GGAGTTGGCTCTTAAGGCTC+TGG | 0.486808 | 3_4:+76389942 | None:intergenic |
| GGTGGAAGCCGCAGTGGAGT+TGG | 0.487473 | 3_4:+76389927 | None:intergenic |
| GATGAGCGTGAGGCTTTGTA+TGG | 0.488987 | 3_4:-76387338 | Msa0523040:CDS |
| GAACAACAGAGGGAGTTGAT+TGG | 0.494915 | 3_4:+76389833 | None:intergenic |
| TGCTCGAGGCGGTCGGAGGA+AGG | 0.495234 | 3_4:+76389906 | None:intergenic |
| ACCTTTAACCTTGTTGCAGA+AGG | 0.501255 | 3_4:+76389669 | None:intergenic |
| CGCCGGAGATGTGGCAGTGG+CGG | 0.501678 | 3_4:+76389774 | None:intergenic |
| CCAGCGTTTCTAGATTATCA+TGG | 0.503632 | 3_4:-76389541 | Msa0523040:intron |
| TAATTGATAAGTTGGTCAAA+AGG | 0.506338 | 3_4:-76389301 | Msa0523040:CDS |
| CATAATGTTCTGTAAAATCC+AGG | 0.510746 | 3_4:-76386823 | Msa0523040:three_prime_UTR |
| TATTGTTGTTTATATATACC+TGG | 0.514377 | 3_4:+76386805 | None:intergenic |
| CCTGACTTGAGGTGGCGAAT+GGG | 0.516805 | 3_4:+76387103 | None:intergenic |
| TCTGAGATGGAAAATGCAGT+TGG | 0.518885 | 3_4:-76387040 | Msa0523040:CDS |
| GATGGAAAATGCAGTTGGAC+AGG | 0.523361 | 3_4:-76387035 | Msa0523040:CDS |
| GCTTTGAGGTCTTGTTGCGC+CGG | 0.525634 | 3_4:+76389757 | None:intergenic |
| GGCTCTTAAGGCTCTGGCAA+TGG | 0.525688 | 3_4:+76389948 | None:intergenic |
| AGAAGCAAACTTATTTAATG+TGG | 0.530184 | 3_4:+76386935 | None:intergenic |
| AATCGCGATGGAAATGGTTC+CGG | 0.532097 | 3_4:+76390025 | None:intergenic |
| GTTGTTCGCAGCGACGTCAT+CGG | 0.536710 | 3_4:-76389817 | Msa0523040:CDS |
| GTATGGAGCTGCTGAACAGT+GGG | 0.539220 | 3_4:-76387321 | Msa0523040:CDS |
| AACAGAGGGAGTTGATTGGT+TGG | 0.543179 | 3_4:+76389837 | None:intergenic |
| GTCTTGTTGCGCCGGAGATG+TGG | 0.543499 | 3_4:+76389765 | None:intergenic |
| GCAATTTCAGTTTATATGAG+AGG | 0.544710 | 3_4:-76387436 | Msa0523040:CDS |
| GGTTAGTGGCTAAGTATGGT+GGG | 0.551859 | 3_4:-76387415 | Msa0523040:CDS |
| TGTATGGAGCTGCTGAACAG+TGG | 0.557881 | 3_4:-76387322 | Msa0523040:CDS |
| CCTTTAACCTTGTTGCAGAA+GGG | 0.563167 | 3_4:+76389670 | None:intergenic |
| GCGATGGAAATGGTTCCGGC+AGG | 0.567081 | 3_4:+76390029 | None:intergenic |
| GAGCTGCTCGAGGCGGTCGG+AGG | 0.571364 | 3_4:+76389902 | None:intergenic |
| AGGTTAGTGGCTAAGTATGG+TGG | 0.582553 | 3_4:-76387416 | Msa0523040:CDS |
| TAATTGGTCTCATTACAAGA+AGG | 0.583029 | 3_4:-76389470 | Msa0523040:CDS |
| CCATATCTTGACCTGACTTG+AGG | 0.583256 | 3_4:+76387092 | None:intergenic |
| TCTCTTAGACACGAAATACA+TGG | 0.584697 | 3_4:+76387385 | None:intergenic |
| ATGGAGCTGCTCGAGGCGGT+CGG | 0.588493 | 3_4:+76389899 | None:intergenic |
| TCGAGGCGGTCGGAGGAAGG+TGG | 0.590975 | 3_4:+76389909 | None:intergenic |
| AGCTTGTCCCTTCTGCAACA+AGG | 0.592945 | 3_4:-76389677 | Msa0523040:CDS |
| GTCAAATATGGAGCTGCTCG+AGG | 0.596084 | 3_4:+76389892 | None:intergenic |
| CAGTGGGTTGAAGCTTTGAA+GGG | 0.598125 | 3_4:-76387305 | Msa0523040:CDS |
| GAGGAAGGTGGAAGCCGCAG+TGG | 0.599666 | 3_4:+76389921 | None:intergenic |
| AAGATATGGTAGAGCACACA+AGG | 0.602564 | 3_4:-76387078 | Msa0523040:CDS |
| CGATGGAAATGGTTCCGGCA+GGG | 0.603446 | 3_4:+76390030 | None:intergenic |
| ATGCAGATGAAGAAAAGAAG+TGG | 0.611944 | 3_4:-76389256 | Msa0523040:CDS |
| TAGGTGGGTAGATAATTACT+TGG | 0.612931 | 3_4:-76388757 | Msa0523040:CDS |
| ATCACCGACAACAATCGCGA+TGG | 0.615811 | 3_4:+76390013 | None:intergenic |
| ACGTCGCTGCGAACAACAGA+GGG | 0.620026 | 3_4:+76389823 | None:intergenic |
| CAACAAGACCTCAAAGCAAG+AGG | 0.620653 | 3_4:-76389751 | Msa0523040:CDS |
| GATAAAACCCTAAACCCTGC+CGG | 0.623297 | 3_4:-76390044 | Msa0523040:five_prime_UTR |
| TGGTATTCAGTACAAAGTGG+TGG | 0.629118 | 3_4:-76389521 | Msa0523040:CDS |
| TTGCGCCGGAGATGTGGCAG+TGG | 0.629506 | 3_4:+76389771 | None:intergenic |
| GGTTGGATACATACAAGTGT+AGG | 0.631928 | 3_4:-76386758 | Msa0523040:three_prime_UTR |
| ACTGAGCTAGCAAGAATGAG+AGG | 0.632041 | 3_4:-76389988 | Msa0523040:exon |
| GTTAGTGGCTAAGTATGGTG+GGG | 0.646752 | 3_4:-76387414 | Msa0523040:CDS |
| CAATATCACTGATGAGCGTG+AGG | 0.652789 | 3_4:-76387348 | Msa0523040:CDS |
| TATAATGTATTGGTGATCTG+TGG | 0.657602 | 3_4:-76386849 | Msa0523040:three_prime_UTR |
| TATCTTGACCTGACTTGAGG+TGG | 0.659112 | 3_4:+76387095 | None:intergenic |
| GCAAGAATGAGAGGACTCAA+CGG | 0.662333 | 3_4:-76389979 | Msa0523040:exon |
| GACGTCGCTGCGAACAACAG+AGG | 0.662716 | 3_4:+76389822 | None:intergenic |
| TCATGGTATTCAGTACAAAG+TGG | 0.680108 | 3_4:-76389524 | Msa0523040:CDS |
| AAATATGGAGCTGCTCGAGG+CGG | 0.687546 | 3_4:+76389895 | None:intergenic |
| CTTAAGAGCCAACTCCACTG+CGG | 0.786495 | 3_4:-76389935 | Msa0523040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTTTTTTAGTTAAAATA+CGG | - | chr3_4:76387639-76387658 | Msa0523040:intron | 10.0% |
| !!! | TAAGTAAATTTTTTTTTGTA+GGG | + | chr3_4:76388720-76388739 | None:intergenic | 10.0% |
| !!! | ATAAGTAAATTTTTTTTTGT+AGG | + | chr3_4:76388721-76388740 | None:intergenic | 10.0% |
| !!! | TTAAAAAATTTAAGAGTATA+AGG | + | chr3_4:76388782-76388801 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTCCTTTTTATAT+TGG | - | chr3_4:76387951-76387970 | Msa0523040:intron | 15.0% |
| !! | AATAATCATTTGATAAATCA+AGG | + | chr3_4:76388005-76388024 | None:intergenic | 15.0% |
| !!! | AGTTATCAGATTTTTTTTTT+TGG | + | chr3_4:76388276-76388295 | None:intergenic | 15.0% |
| !!! | ATTTGTTGATATTATAACAA+TGG | - | chr3_4:76388321-76388340 | Msa0523040:intron | 15.0% |
| !! | TTTGTTGATATTATAACAAT+GGG | - | chr3_4:76388322-76388341 | Msa0523040:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr3_4:76388691-76388710 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | + | chr3_4:76388753-76388772 | None:intergenic | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | + | chr3_4:76388754-76388773 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr3_4:76388913-76388932 | Msa0523040:intron | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr3_4:76388948-76388967 | Msa0523040:intron | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr3_4:76389032-76389051 | Msa0523040:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr3_4:76389104-76389123 | Msa0523040:intron | 15.0% |
| !! | AATATACAATAAACCACAAA+TGG | + | chr3_4:76387426-76387445 | None:intergenic | 20.0% |
| !! | ATCAATTATGTCTAACAAAA+GGG | + | chr3_4:76387487-76387506 | None:intergenic | 20.0% |
| !! | TATCAATTATGTCTAACAAA+AGG | + | chr3_4:76387488-76387507 | None:intergenic | 20.0% |
| !!! | AGATTAAGTACATATGATTT+TGG | - | chr3_4:76387979-76387998 | Msa0523040:intron | 20.0% |
| !! | AAGTTATCAGATCTTAAAAA+AGG | + | chr3_4:76388247-76388266 | None:intergenic | 20.0% |
| !!! | TGTTACATTCAGTTATTTTA+TGG | - | chr3_4:76388296-76388315 | Msa0523040:intron | 20.0% |
| !!! | AATAACTCTACATTAGTTTT+AGG | - | chr3_4:76388616-76388635 | Msa0523040:intron | 20.0% |
| !!! | ATAACTCTACATTAGTTTTA+GGG | - | chr3_4:76388617-76388636 | Msa0523040:intron | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | - | chr3_4:76388633-76388652 | Msa0523040:intron | 20.0% |
| !! | GTGTTAAAAACGTTATTAAA+AGG | + | chr3_4:76388978-76388997 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr3_4:76389002-76389021 | None:intergenic | 20.0% |
| !! | GATAAATATTGCTTCATAAA+AGG | + | chr3_4:76389239-76389258 | None:intergenic | 20.0% |
| !! | AATATTTATCAACCATTACA+AGG | - | chr3_4:76389249-76389268 | Msa0523040:intron | 20.0% |
| !! | ATATTTATCAACCATTACAA+GGG | - | chr3_4:76389250-76389269 | Msa0523040:intron | 20.0% |
| !! | TGTTCTATTATTCATTATCA+TGG | - | chr3_4:76389925-76389944 | Msa0523040:CDS | 20.0% |
| !!! | TATTGTTGTTTATATATACC+TGG | + | chr3_4:76389998-76390017 | None:intergenic | 20.0% |
| ! | TGAAAAAGAACAACTTCTTT+GGG | + | chr3_4:76387097-76387116 | None:intergenic | 25.0% |
| ! | TTGAAAAAGAACAACTTCTT+TGG | + | chr3_4:76387098-76387117 | None:intergenic | 25.0% |
| ! | GGAAAAAATGCAAAAACAAT+AGG | + | chr3_4:76387238-76387257 | None:intergenic | 25.0% |
| ! | TTAATCTCTTTCTTGTTCAT+CGG | + | chr3_4:76387313-76387332 | None:intergenic | 25.0% |
| ! | TGAACAAGAAAGAGATTAAT+TGG | - | chr3_4:76387314-76387333 | Msa0523040:CDS | 25.0% |
| ! | TCAATTATGTCTAACAAAAG+GGG | + | chr3_4:76387486-76387505 | None:intergenic | 25.0% |
| ! | GTTAGACATAATTGATAAGT+TGG | - | chr3_4:76387491-76387510 | Msa0523040:intron | 25.0% |
| !!! | TAATTGATAAGTTGGTCAAA+AGG | - | chr3_4:76387499-76387518 | Msa0523040:intron | 25.0% |
| ! | GTTCAAATAAACAAGAAGAA+AGG | + | chr3_4:76387601-76387620 | None:intergenic | 25.0% |
| ! | TAACTAAAAAAGATAGCTAG+AGG | + | chr3_4:76387634-76387653 | None:intergenic | 25.0% |
| ! | TTTGTAATCGATCTCTAAAT+CGG | + | chr3_4:76387789-76387808 | None:intergenic | 25.0% |
| ! | ACTACTAAAAATTCTCTACT+TGG | + | chr3_4:76387847-76387866 | None:intergenic | 25.0% |
| ! | ATCTTGCATCCAATATAAAA+AGG | + | chr3_4:76387963-76387982 | None:intergenic | 25.0% |
| ! | TTCGATTATATCACTACTAA+AGG | - | chr3_4:76388119-76388138 | Msa0523040:intron | 25.0% |
| ! | TTATATCACTACTAAAGGTA+AGG | - | chr3_4:76388124-76388143 | Msa0523040:intron | 25.0% |
| ! | TTAATATTTGATGAATCAGG+AGG | + | chr3_4:76388389-76388408 | None:intergenic | 25.0% |
| ! | AGCTTAATATTTGATGAATC+AGG | + | chr3_4:76388392-76388411 | None:intergenic | 25.0% |
| !!! | AACATACAGCTTTAAAAACA+TGG | + | chr3_4:76388459-76388478 | None:intergenic | 25.0% |
| !!! | TTAAAGCTGTATGTTTTGAA+AGG | - | chr3_4:76388464-76388483 | Msa0523040:intron | 25.0% |
| !!! | TAGAGTTATTTTTCAAACTG+AGG | + | chr3_4:76388606-76388625 | None:intergenic | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr3_4:76389043-76389062 | Msa0523040:intron | 25.0% |
| !! | CTAAGGGTTAATTATGTTTT+TGG | + | chr3_4:76389162-76389181 | None:intergenic | 25.0% |
| ! | ATAAAGAGCAGAAATAGAAA+AGG | + | chr3_4:76389315-76389334 | None:intergenic | 25.0% |
| !! | TGAACATACCAAGAAATTTT+CGG | + | chr3_4:76389521-76389540 | None:intergenic | 25.0% |
| ! | GTATCATATCTCAGTTATTA+TGG | + | chr3_4:76389554-76389573 | None:intergenic | 25.0% |
| ! | TCACAAATATAAGCACTTAA+GGG | + | chr3_4:76389617-76389636 | None:intergenic | 25.0% |
| ! | TTCACAAATATAAGCACTTA+AGG | + | chr3_4:76389618-76389637 | None:intergenic | 25.0% |
| !! | GTGCTTATATTTGTGAATTT+TGG | - | chr3_4:76389621-76389640 | Msa0523040:intron | 25.0% |
| !!! | TTATATTTGTGAATTTTGGC+AGG | - | chr3_4:76389625-76389644 | Msa0523040:intron | 25.0% |
| ! | AGAAGCAAACTTATTTAATG+TGG | + | chr3_4:76389868-76389887 | None:intergenic | 25.0% |
| ! | ATCATGGTTGTATAATGTAT+TGG | - | chr3_4:76389941-76389960 | Msa0523040:CDS | 25.0% |
| AGTAACGTTTAATCGTGTTA+AGG | + | chr3_4:76387180-76387199 | None:intergenic | 30.0% | |
| ! | TAATTGGTCTCATTACAAGA+AGG | - | chr3_4:76387330-76387349 | Msa0523040:CDS | 30.0% |
| CTTGTTCATATTTCCATTTG+TGG | - | chr3_4:76387410-76387429 | Msa0523040:CDS | 30.0% | |
| CAATTATGTCTAACAAAAGG+GGG | + | chr3_4:76387485-76387504 | None:intergenic | 30.0% | |
| CAAGAAGAAAGGATTAGAAA+AGG | + | chr3_4:76387590-76387609 | None:intergenic | 30.0% | |
| CTACATAGACTGAAATATTC+CGG | - | chr3_4:76387818-76387837 | Msa0523040:intron | 30.0% | |
| ! | CAATTGCAATCTAAAACCAT+GGG | - | chr3_4:76387885-76387904 | Msa0523040:intron | 30.0% |
| AATAATCTCATAAATGCCCA+TGG | + | chr3_4:76387904-76387923 | None:intergenic | 30.0% | |
| TGGGCATTTATGAGATTATT+AGG | - | chr3_4:76387904-76387923 | Msa0523040:intron | 30.0% | |
| TTATGAGATTATTAGGAGTC+TGG | - | chr3_4:76387911-76387930 | Msa0523040:intron | 30.0% | |
| !! | TTTGCTGTGACTTGTTATAT+AGG | - | chr3_4:76388024-76388043 | Msa0523040:intron | 30.0% |
| GAAACAGTTCGATATATGTT+TGG | + | chr3_4:76388083-76388102 | None:intergenic | 30.0% | |
| AAAGGAATTATCTTCGCATT+TGG | + | chr3_4:76388229-76388248 | None:intergenic | 30.0% | |
| CATCAAATATTAAGCTGTCT+TGG | - | chr3_4:76388396-76388415 | Msa0523040:intron | 30.0% | |
| GAAAATACTTCTCTCTCTAA+AGG | + | chr3_4:76388530-76388549 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGGTCCCTATAAAA+TGG | - | chr3_4:76388647-76388666 | Msa0523040:intron | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | + | chr3_4:76388676-76388695 | None:intergenic | 30.0% | |
| ! | CAAGTTTAGAACACTTTGAA+AGG | - | chr3_4:76388816-76388835 | Msa0523040:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr3_4:76388951-76388970 | Msa0523040:intron | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr3_4:76389074-76389093 | Msa0523040:intron | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr3_4:76389075-76389094 | Msa0523040:intron | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | - | chr3_4:76389119-76389138 | Msa0523040:intron | 30.0% | |
| AAAAGTAATCACCCTTGTAA+TGG | + | chr3_4:76389264-76389283 | None:intergenic | 30.0% | |
| GCAATTTCAGTTTATATGAG+AGG | - | chr3_4:76389364-76389383 | Msa0523040:intron | 30.0% | |
| ! | TATAATGTATTGGTGATCTG+TGG | - | chr3_4:76389951-76389970 | Msa0523040:CDS | 30.0% |
| CATAATGTTCTGTAAAATCC+AGG | - | chr3_4:76389977-76389996 | Msa0523040:exon | 30.0% | |
| CCATGTTGTCGAAAAAAAAA+AGG | + | chr3_4:76390024-76390043 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTTTTTCGACAACA+TGG | - | chr3_4:76390021-76390040 | Msa0523040:five_prime_UTR | 30.0% |
| !!! | TTTTTTTTCGACAACATGGT+TGG | - | chr3_4:76390025-76390044 | Msa0523040:five_prime_UTR | 30.0% |
| !! | GGGTTAGTTGAAGTCAAATA+TGG | + | chr3_4:76386923-76386942 | None:intergenic | 35.0% |
| GTCATCGGATTTAGGTATTA+CGG | - | chr3_4:76386998-76387017 | Msa0523040:exon | 35.0% | |
| TCATGGTATTCAGTACAAAG+TGG | - | chr3_4:76387276-76387295 | Msa0523040:intron | 35.0% | |
| ! | GAACAATTGGTTGATTCTTC+AGG | - | chr3_4:76387376-76387395 | Msa0523040:CDS | 35.0% |
| TCTGCATTCAAGTCATAATC+TGG | + | chr3_4:76387531-76387550 | None:intergenic | 35.0% | |
| ATGCAGATGAAGAAAAGAAG+TGG | - | chr3_4:76387544-76387563 | Msa0523040:intron | 35.0% | |
| TTAAAACCTTAGAAGAGCAG+TGG | + | chr3_4:76387676-76387695 | None:intergenic | 35.0% | |
| ! | AAAATTCTCTACTTGGTGAC+CGG | + | chr3_4:76387840-76387859 | None:intergenic | 35.0% |
| ! | GCAATTGCAATCTAAAACCA+TGG | - | chr3_4:76387884-76387903 | Msa0523040:intron | 35.0% |
| !! | CTGTGACTTGTTATATAGGT+GGG | - | chr3_4:76388028-76388047 | Msa0523040:intron | 35.0% |
| TAGGTGGGTAGATAATTACT+TGG | - | chr3_4:76388043-76388062 | Msa0523040:intron | 35.0% | |
| TGTATATTAAGCTGTCTCTG+TGG | - | chr3_4:76388346-76388365 | Msa0523040:intron | 35.0% | |
| AAACATGGCTCAGTTGAATA+TGG | + | chr3_4:76388444-76388463 | None:intergenic | 35.0% | |
| !! | TAGAAGGTCGCCATTTTATA+GGG | + | chr3_4:76388660-76388679 | None:intergenic | 35.0% |
| !! | TTAGAAGGTCGCCATTTTAT+AGG | + | chr3_4:76388661-76388680 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | - | chr3_4:76389134-76389153 | Msa0523040:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | - | chr3_4:76389135-76389154 | Msa0523040:intron | 35.0% |
| ! | AGCAAGAGGCATAAAACTAA+GGG | + | chr3_4:76389178-76389197 | None:intergenic | 35.0% |
| ! | AAGCAAGAGGCATAAAACTA+AGG | + | chr3_4:76389179-76389198 | None:intergenic | 35.0% |
| AGAGCAGAAATAGAAAAGGA+AGG | + | chr3_4:76389311-76389330 | None:intergenic | 35.0% | |
| CAGTTTATATGAGAGGTTAG+TGG | - | chr3_4:76389371-76389390 | Msa0523040:intron | 35.0% | |
| TCTCTTAGACACGAAATACA+TGG | + | chr3_4:76389418-76389437 | None:intergenic | 35.0% | |
| TATAAGCACTTAAGGGTTAC+AGG | + | chr3_4:76389610-76389629 | None:intergenic | 35.0% | |
| ACAGCAAGATCTGCTAAATT+AGG | + | chr3_4:76389661-76389680 | None:intergenic | 35.0% | |
| TTCTACTTATGCACTCATTC+TGG | + | chr3_4:76389794-76389813 | None:intergenic | 35.0% | |
| TCTAAGCGAGTTTCAACATA+TGG | - | chr3_4:76389818-76389837 | Msa0523040:CDS | 35.0% | |
| CGAGTTTCAACATATGGATA+AGG | - | chr3_4:76389824-76389843 | Msa0523040:CDS | 35.0% | |
| ATTTCCATCGCGATTGTTGT+CGG | - | chr3_4:76386783-76386802 | Msa0523040:three_prime_UTR | 40.0% | |
| ! | AGCGATCAACGAGATTTTGA+GGG | + | chr3_4:76386943-76386962 | None:intergenic | 40.0% |
| CCTTTAACCTTGTTGCAGAA+GGG | + | chr3_4:76387133-76387152 | None:intergenic | 40.0% | |
| ACCTTTAACCTTGTTGCAGA+AGG | + | chr3_4:76387134-76387153 | None:intergenic | 40.0% | |
| TGATAATCTAGAAACGCTGG+AGG | + | chr3_4:76387259-76387278 | None:intergenic | 40.0% | |
| CCATGATAATCTAGAAACGC+TGG | + | chr3_4:76387262-76387281 | None:intergenic | 40.0% | |
| ! | CCAGCGTTTCTAGATTATCA+TGG | - | chr3_4:76387259-76387278 | Msa0523040:intron | 40.0% |
| TGGTATTCAGTACAAAGTGG+TGG | - | chr3_4:76387279-76387298 | Msa0523040:intron | 40.0% | |
| TCACCATCAACAGTGACAAT+AGG | + | chr3_4:76387358-76387377 | None:intergenic | 40.0% | |
| !! | CACTGTTGATGGTGAACAAT+TGG | - | chr3_4:76387363-76387382 | Msa0523040:CDS | 40.0% |
| TTTGATGCTGTAGAGAGTTG+TGG | - | chr3_4:76387702-76387721 | Msa0523040:intron | 40.0% | |
| !! | GCTGTGACTTGTTATATAGG+TGG | - | chr3_4:76388027-76388046 | Msa0523040:intron | 40.0% |
| TCGCATTTGGAAAATGACAG+AGG | + | chr3_4:76388216-76388235 | None:intergenic | 40.0% | |
| !! | TTTTGAAAGGATACCAGTCG+AGG | - | chr3_4:76388477-76388496 | Msa0523040:intron | 40.0% |
| TTTGAAAGGATACCAGTCGA+GGG | - | chr3_4:76388478-76388497 | Msa0523040:intron | 40.0% | |
| AAAAGCAAGAACTTGGAGTG+AGG | + | chr3_4:76388580-76388599 | None:intergenic | 40.0% | |
| GAGGATGAAAAGCAAGAACT+TGG | + | chr3_4:76388587-76388606 | None:intergenic | 40.0% | |
| AACTGAGTACGAAAAGCAAG+AGG | + | chr3_4:76389192-76389211 | None:intergenic | 40.0% | |
| TCCTGAAGTCTATCATGCTA+TGG | - | chr3_4:76389334-76389353 | Msa0523040:intron | 40.0% | |
| TCCATAGCATGATAGACTTC+AGG | + | chr3_4:76389338-76389357 | None:intergenic | 40.0% | |
| TCTATCATGCTATGGAGTGT+AGG | - | chr3_4:76389342-76389361 | Msa0523040:intron | 40.0% | |
| TTGAAGGGCCGAAAATTTCT+TGG | - | chr3_4:76389510-76389529 | Msa0523040:CDS | 40.0% | |
| !! | GTGAATTTTGGCAGGTGATT+TGG | - | chr3_4:76389633-76389652 | Msa0523040:intron | 40.0% |
| ! | TTAGCAGATCTTGCTGTCTT+TGG | - | chr3_4:76389664-76389683 | Msa0523040:intron | 40.0% |
| AAGATATGGTAGAGCACACA+AGG | - | chr3_4:76389722-76389741 | Msa0523040:CDS | 40.0% | |
| !!! | TGGGAATTGGTTTTCTGAGA+TGG | - | chr3_4:76389747-76389766 | Msa0523040:CDS | 40.0% |
| ! | TCTGAGATGGAAAATGCAGT+TGG | - | chr3_4:76389760-76389779 | Msa0523040:CDS | 40.0% |
| GGTTGGATACATACAAGTGT+AGG | - | chr3_4:76390042-76390061 | Msa0523040:five_prime_UTR | 40.0% | |
| GATAAAACCCTAAACCCTGC+CGG | - | chr3_4:76386756-76386775 | Msa0523040:three_prime_UTR | 45.0% | |
| AATCGCGATGGAAATGGTTC+CGG | + | chr3_4:76386778-76386797 | None:intergenic | 45.0% | |
| GACAACAATCGCGATGGAAA+TGG | + | chr3_4:76386784-76386803 | None:intergenic | 45.0% | |
| ACTGAGCTAGCAAGAATGAG+AGG | - | chr3_4:76386812-76386831 | Msa0523040:three_prime_UTR | 45.0% | |
| GCAAGAATGAGAGGACTCAA+CGG | - | chr3_4:76386821-76386840 | Msa0523040:three_prime_UTR | 45.0% | |
| ! | GAGCGATCAACGAGATTTTG+AGG | + | chr3_4:76386944-76386963 | None:intergenic | 45.0% |
| ! | AACAGAGGGAGTTGATTGGT+TGG | + | chr3_4:76386966-76386985 | None:intergenic | 45.0% |
| ! | GAACAACAGAGGGAGTTGAT+TGG | + | chr3_4:76386970-76386989 | None:intergenic | 45.0% |
| CAACAAGACCTCAAAGCAAG+AGG | - | chr3_4:76387049-76387068 | Msa0523040:CDS | 45.0% | |
| GTTCTGATCCTCTTGCTTTG+AGG | + | chr3_4:76387060-76387079 | None:intergenic | 45.0% | |
| CCCTTCTGCAACAAGGTTAA+AGG | - | chr3_4:76387130-76387149 | Msa0523040:CDS | 45.0% | |
| GTGCCTATTGTCACTGTTGA+TGG | - | chr3_4:76387352-76387371 | Msa0523040:CDS | 45.0% | |
| CTTGTACCACTGCTCTTCTA+AGG | - | chr3_4:76387667-76387686 | Msa0523040:intron | 45.0% | |
| AGGAAGGCAGCAGACAATAA+GGG | + | chr3_4:76389295-76389314 | None:intergenic | 45.0% | |
| AAGGAAGGCAGCAGACAATA+AGG | + | chr3_4:76389296-76389315 | None:intergenic | 45.0% | |
| GAGAGGTTAGTGGCTAAGTA+TGG | - | chr3_4:76389381-76389400 | Msa0523040:intron | 45.0% | |
| AGGTTAGTGGCTAAGTATGG+TGG | - | chr3_4:76389384-76389403 | Msa0523040:intron | 45.0% | |
| GGTTAGTGGCTAAGTATGGT+GGG | - | chr3_4:76389385-76389404 | Msa0523040:intron | 45.0% | |
| GTTAGTGGCTAAGTATGGTG+GGG | - | chr3_4:76389386-76389405 | Msa0523040:intron | 45.0% | |
| CAATATCACTGATGAGCGTG+AGG | - | chr3_4:76389452-76389471 | Msa0523040:CDS | 45.0% | |
| !! | ACAGTGGGTTGAAGCTTTGA+AGG | - | chr3_4:76389494-76389513 | Msa0523040:CDS | 45.0% |
| !! | CAGTGGGTTGAAGCTTTGAA+GGG | - | chr3_4:76389495-76389514 | Msa0523040:CDS | 45.0% |
| TTAAGGGTTACAGGTCTTCG+AGG | + | chr3_4:76389601-76389620 | None:intergenic | 45.0% | |
| ! | TATCTTGACCTGACTTGAGG+TGG | + | chr3_4:76389708-76389727 | None:intergenic | 45.0% |
| ! | CCATATCTTGACCTGACTTG+AGG | + | chr3_4:76389711-76389730 | None:intergenic | 45.0% |
| CCTCAAGTCAGGTCAAGATA+TGG | - | chr3_4:76389708-76389727 | Msa0523040:CDS | 45.0% | |
| ATGGTAGAGCACACAAGGAT+TGG | - | chr3_4:76389727-76389746 | Msa0523040:CDS | 45.0% | |
| TGGTAGAGCACACAAGGATT+GGG | - | chr3_4:76389728-76389747 | Msa0523040:CDS | 45.0% | |
| AGCACACAAGGATTGGGAAT+TGG | - | chr3_4:76389734-76389753 | Msa0523040:CDS | 45.0% | |
| GATGGAAAATGCAGTTGGAC+AGG | - | chr3_4:76389765-76389784 | Msa0523040:CDS | 45.0% | |
| AATGGTTCCGGCAGGGTTTA+GGG | + | chr3_4:76386766-76386785 | None:intergenic | 50.0% | |
| AAATGGTTCCGGCAGGGTTT+AGG | + | chr3_4:76386767-76386786 | None:intergenic | 50.0% | |
| ATCACCGACAACAATCGCGA+TGG | + | chr3_4:76386790-76386809 | None:intergenic | 50.0% | |
| CTTAAGAGCCAACTCCACTG+CGG | - | chr3_4:76386865-76386884 | Msa0523040:three_prime_UTR | 50.0% | |
| AAATATGGAGCTGCTCGAGG+CGG | + | chr3_4:76386908-76386927 | None:intergenic | 50.0% | |
| GTCAAATATGGAGCTGCTCG+AGG | + | chr3_4:76386911-76386930 | None:intergenic | 50.0% | |
| AGCTTGTCCCTTCTGCAACA+AGG | - | chr3_4:76387123-76387142 | Msa0523040:CDS | 50.0% | |
| AGAAAAGAAGTGGCGCGAGT+AGG | - | chr3_4:76387554-76387573 | Msa0523040:intron | 50.0% | |
| AAATACCTCTCTCCCTCGAC+TGG | + | chr3_4:76388493-76388512 | None:intergenic | 50.0% | |
| ! | GATGAGCGTGAGGCTTTGTA+TGG | - | chr3_4:76389462-76389481 | Msa0523040:CDS | 50.0% |
| TGTATGGAGCTGCTGAACAG+TGG | - | chr3_4:76389478-76389497 | Msa0523040:CDS | 50.0% | |
| GTATGGAGCTGCTGAACAGT+GGG | - | chr3_4:76389479-76389498 | Msa0523040:CDS | 50.0% | |
| CGATGGAAATGGTTCCGGCA+GGG | + | chr3_4:76386773-76386792 | None:intergenic | 55.0% | |
| ! | GGCTCTTAAGGCTCTGGCAA+TGG | + | chr3_4:76386855-76386874 | None:intergenic | 55.0% |
| ! | GGAGTTGGCTCTTAAGGCTC+TGG | + | chr3_4:76386861-76386880 | None:intergenic | 55.0% |
| ! | CGCAGTGGAGTTGGCTCTTA+AGG | + | chr3_4:76386867-76386886 | None:intergenic | 55.0% |
| ACGTCGCTGCGAACAACAGA+GGG | + | chr3_4:76386980-76386999 | None:intergenic | 55.0% | |
| GTTGTTCGCAGCGACGTCAT+CGG | - | chr3_4:76386983-76387002 | Msa0523040:three_prime_UTR | 55.0% | |
| GCAGCGACGTCATCGGATTT+AGG | - | chr3_4:76386990-76387009 | Msa0523040:three_prime_UTR | 55.0% | |
| !! | GCTTTGAGGTCTTGTTGCGC+CGG | + | chr3_4:76387046-76387065 | None:intergenic | 55.0% |
| ! | CCTGACTTGAGGTGGCGAAT+GGG | + | chr3_4:76389700-76389719 | None:intergenic | 55.0% |
| ! | ACCTGACTTGAGGTGGCGAA+TGG | + | chr3_4:76389701-76389720 | None:intergenic | 55.0% |
| GCGATGGAAATGGTTCCGGC+AGG | + | chr3_4:76386774-76386793 | None:intergenic | 60.0% | |
| GACGTCGCTGCGAACAACAG+AGG | + | chr3_4:76386981-76387000 | None:intergenic | 60.0% | |
| ! | GTCTTGTTGCGCCGGAGATG+TGG | + | chr3_4:76387038-76387057 | None:intergenic | 60.0% |
| GGATACCAGTCGAGGGAGAG+AGG | - | chr3_4:76388485-76388504 | Msa0523040:intron | 60.0% | |
| CCCATTCGCCACCTCAAGTC+AGG | - | chr3_4:76389697-76389716 | Msa0523040:CDS | 60.0% | |
| GGTGGAAGCCGCAGTGGAGT+TGG | + | chr3_4:76386876-76386895 | None:intergenic | 65.0% | |
| GAGGAAGGTGGAAGCCGCAG+TGG | + | chr3_4:76386882-76386901 | None:intergenic | 65.0% | |
| ATGGAGCTGCTCGAGGCGGT+CGG | + | chr3_4:76386904-76386923 | None:intergenic | 65.0% | |
| TGCCGCCACTGCCACATCTC+CGG | - | chr3_4:76387024-76387043 | Msa0523040:CDS | 65.0% | |
| TTGCGCCGGAGATGTGGCAG+TGG | + | chr3_4:76387032-76387051 | None:intergenic | 65.0% | |
| TCGAGGCGGTCGGAGGAAGG+TGG | + | chr3_4:76386894-76386913 | None:intergenic | 70.0% | |
| TGCTCGAGGCGGTCGGAGGA+AGG | + | chr3_4:76386897-76386916 | None:intergenic | 70.0% | |
| CGCCGGAGATGTGGCAGTGG+CGG | + | chr3_4:76387029-76387048 | None:intergenic | 70.0% | |
| GAGCTGCTCGAGGCGGTCGG+AGG | + | chr3_4:76386901-76386920 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 76386750 | 76390072 | 76386750 | ID=Msa0523040;Name=Msa0523040 |
| chr3_4 | mRNA | 76386750 | 76390072 | 76386750 | ID=Msa0523040-mRNA-1;Parent=Msa0523040;Name=Msa0523040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=77|1|1|1|1|1|6|265|319 |
| chr3_4 | exon | 76386750 | 76387175 | 76386750 | ID=Msa0523040-mRNA-1:exon:22171;Parent=Msa0523040-mRNA-1 |
| chr3_4 | exon | 76387291 | 76387458 | 76387291 | ID=Msa0523040-mRNA-1:exon:22170;Parent=Msa0523040-mRNA-1 |
| chr3_4 | exon | 76388682 | 76388776 | 76388682 | ID=Msa0523040-mRNA-1:exon:22169;Parent=Msa0523040-mRNA-1 |
| chr3_4 | exon | 76389251 | 76389326 | 76389251 | ID=Msa0523040-mRNA-1:exon:22168;Parent=Msa0523040-mRNA-1 |
| chr3_4 | exon | 76389425 | 76389559 | 76389425 | ID=Msa0523040-mRNA-1:exon:22167;Parent=Msa0523040-mRNA-1 |
| chr3_4 | exon | 76389671 | 76390072 | 76389671 | ID=Msa0523040-mRNA-1:exon:22166;Parent=Msa0523040-mRNA-1 |
| chr3_4 | five_prime_UTR | 76389996 | 76390072 | 76389996 | ID=Msa0523040-mRNA-1:five_prime_utr;Parent=Msa0523040-mRNA-1 |
| chr3_4 | CDS | 76389671 | 76389995 | 76389671 | ID=Msa0523040-mRNA-1:cds;Parent=Msa0523040-mRNA-1 |
| chr3_4 | CDS | 76389425 | 76389559 | 76389425 | ID=Msa0523040-mRNA-1:cds;Parent=Msa0523040-mRNA-1 |
| chr3_4 | CDS | 76389251 | 76389326 | 76389251 | ID=Msa0523040-mRNA-1:cds;Parent=Msa0523040-mRNA-1 |
| chr3_4 | CDS | 76388682 | 76388776 | 76388682 | ID=Msa0523040-mRNA-1:cds;Parent=Msa0523040-mRNA-1 |
| chr3_4 | CDS | 76387291 | 76387458 | 76387291 | ID=Msa0523040-mRNA-1:cds;Parent=Msa0523040-mRNA-1 |
| chr3_4 | CDS | 76387015 | 76387175 | 76387015 | ID=Msa0523040-mRNA-1:cds;Parent=Msa0523040-mRNA-1 |
| chr3_4 | three_prime_UTR | 76386750 | 76387014 | 76386750 | ID=Msa0523040-mRNA-1:three_prime_utr;Parent=Msa0523040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
