Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383830 | XP_003603764.2 | 90.909 | 264 | 23 | 1 | 1 | 264 | 1 | 263 | 1.14e-90 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383830 | B7FL43 | 90.909 | 264 | 23 | 1 | 1 | 264 | 1 | 263 | 5.43e-91 | 279 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385300 | Msa1383830 | 0.805650 | 1.204719e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383830 | MtrunA17_Chr3g0142711 | 90.909 | 264 | 23 | 1 | 1 | 264 | 1 | 263 | 1.05e-94 | 279 |
| Msa1383830 | MtrunA17_Chr3g0140151 | 51.961 | 102 | 47 | 1 | 117 | 218 | 97 | 196 | 7.14e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383830 | AT1G19990.1 | 43.173 | 271 | 119 | 9 | 2 | 261 | 3 | 249 | 8.48e-37 | 131 |
| Msa1383830 | AT5G11600.2 | 54.651 | 86 | 39 | 0 | 106 | 191 | 108 | 193 | 2.90e-25 | 100 |
| Msa1383830 | AT5G11600.1 | 54.651 | 86 | 39 | 0 | 106 | 191 | 108 | 193 | 2.90e-25 | 100 |
Find 64 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATAATTGACGAATTAA+AGG | 0.232622 | tig0020612:+114494 | None:intergenic |
| ACTTTCTTTGCCACCTCTTT+AGG | 0.245967 | tig0020612:+114956 | None:intergenic |
| CAACGGTAAACCCCTTTCTA+AGG | 0.258341 | tig0020612:-117661 | Msa1383830:CDS |
| TTTCTTAATTGTAACAGATT+TGG | 0.302366 | tig0020612:+114853 | None:intergenic |
| ACAGCAGTTACAGACTTAAC+AGG | 0.336791 | tig0020612:+114887 | None:intergenic |
| TTTGTGAACAATCGATTCTA+AGG | 0.355684 | tig0020612:+117765 | None:intergenic |
| TGCTTTGATGTGGAGTTTGT+TGG | 0.359320 | tig0020612:+114791 | None:intergenic |
| ACGGAAGAATTTGGGGTAGC+TGG | 0.368565 | tig0020612:+114824 | None:intergenic |
| AACTGCAGGTTGATGGAATC+AGG | 0.375812 | tig0020612:-114986 | Msa1383830:intron |
| TTGGTGACACAAAACTTGTA+AGG | 0.394895 | tig0020612:-114605 | Msa1383830:three_prime_UTR |
| ATTTGTGCCATTTCGCTAGT+TGG | 0.401961 | tig0020612:+117112 | None:intergenic |
| CTAGCGAAATGGCACAAATC+TGG | 0.411971 | tig0020612:-117108 | Msa1383830:intron |
| GTGGCACGAGGAATGGGTTC+AGG | 0.420548 | tig0020612:+117606 | None:intergenic |
| CTTGAGTTCCCTCATAACTT+TGG | 0.420628 | tig0020612:+117569 | None:intergenic |
| CTGGGGCAAAAGCATAAATC+TGG | 0.420706 | tig0020612:+114345 | None:intergenic |
| TGATTGCAACTGCAGGTTGA+TGG | 0.428702 | tig0020612:-114993 | Msa1383830:intron |
| TCAGATTTGTGCTTCTTGGT+TGG | 0.428762 | tig0020612:+114749 | None:intergenic |
| AAAGAAGAAGGTAAAGAAAG+AGG | 0.432786 | tig0020612:-117355 | Msa1383830:CDS |
| CTTCTCGCTCCAAAGTTATG+AGG | 0.439522 | tig0020612:-117578 | Msa1383830:CDS |
| AGCTGAAGTGGCACGAGGAA+TGG | 0.440315 | tig0020612:+117599 | None:intergenic |
| GTCTCGTAGAAAACCCTAGA+AGG | 0.445303 | tig0020612:+117151 | None:intergenic |
| GGTGAAGATGAACAAGGTTT+GGG | 0.454900 | tig0020612:+117804 | None:intergenic |
| GAAGGTTAAGAAAGTAAAGA+AGG | 0.462009 | tig0020612:-117310 | Msa1383830:CDS |
| AGGTGAAGATGAACAAGGTT+TGG | 0.463475 | tig0020612:+117803 | None:intergenic |
| GAAGGTAAAGAAAGAGGAAG+AGG | 0.464209 | tig0020612:-117349 | Msa1383830:CDS |
| GCTGAAGTGGCACGAGGAAT+GGG | 0.464474 | tig0020612:+117600 | None:intergenic |
| CGGAAGAATTTGGGGTAGCT+GGG | 0.468663 | tig0020612:+114825 | None:intergenic |
| ACAAATTCCAACTAGCGAAA+TGG | 0.472854 | tig0020612:-117119 | Msa1383830:CDS |
| ATTGTTATGCAAACCTCTGC+AGG | 0.481817 | tig0020612:+117255 | None:intergenic |
| GACATAAGCGATTCTGAAGA+AGG | 0.482635 | tig0020612:-117839 | Msa1383830:five_prime_UTR |
| TTAGAAAGGGGTTTACCGTT+GGG | 0.482681 | tig0020612:+117663 | None:intergenic |
| ATAAATTGCATTTAGCAGAA+AGG | 0.482953 | tig0020612:-114399 | Msa1383830:three_prime_UTR |
| GGCGGATCACGTTTCTGTCC+AGG | 0.489611 | tig0020612:+117276 | None:intergenic |
| GTGTCACCAACAACAAATGC+CGG | 0.491011 | tig0020612:+114618 | None:intergenic |
| TTTGTCATCGTCGTCTTCGT+CGG | 0.494023 | tig0020612:+117530 | None:intergenic |
| CTTAGAAAGGGGTTTACCGT+TGG | 0.503604 | tig0020612:+117662 | None:intergenic |
| ATCAGGCTTGCTTCCTAAAG+AGG | 0.510477 | tig0020612:-114969 | Msa1383830:CDS |
| TGTCACCAACAACAAATGCC+GGG | 0.520299 | tig0020612:+114619 | None:intergenic |
| TGTGCTGTGTTAGGTTGTGA+AGG | 0.525327 | tig0020612:-117391 | Msa1383830:intron |
| ATTCTAAGGTTCAATGTGGA+TGG | 0.542258 | tig0020612:+117779 | None:intergenic |
| AAGAAGGTTTATGATTTACC+TGG | 0.546770 | tig0020612:-117294 | Msa1383830:CDS |
| AACGGTAAACCCCTTTCTAA+GGG | 0.555197 | tig0020612:-117660 | Msa1383830:CDS |
| GGAGTTTGTCTGCTTTGATG+TGG | 0.556824 | tig0020612:+114781 | None:intergenic |
| TGGTGACACAAAACTTGTAA+GGG | 0.558331 | tig0020612:-114604 | Msa1383830:three_prime_UTR |
| CTTCTTGGTTGGCTTCGATG+TGG | 0.562372 | tig0020612:+114760 | None:intergenic |
| ACGAATTAAAGGTCTACAGC+AGG | 0.562539 | tig0020612:+114505 | None:intergenic |
| AAAGAAAGCTCTGCTGCAGA+AGG | 0.571325 | tig0020612:-114918 | Msa1383830:CDS |
| TAAGGTTCAATGTGGATGGA+AGG | 0.579955 | tig0020612:+117783 | None:intergenic |
| ACAGGTTTCGAATCTTCAGA+AGG | 0.581427 | tig0020612:+117738 | None:intergenic |
| TTCTCGCTCCAAAGTTATGA+GGG | 0.585381 | tig0020612:-117577 | Msa1383830:CDS |
| CAAAGTTATGAGGGAACTCA+AGG | 0.590458 | tig0020612:-117568 | Msa1383830:CDS |
| TTTGGAGCGAGAAGCTGAAG+TGG | 0.605696 | tig0020612:+117587 | None:intergenic |
| GAAACGTGATCCGCCTGCAG+AGG | 0.609203 | tig0020612:-117268 | Msa1383830:intron |
| GTCACCAACAACAAATGCCG+GGG | 0.615591 | tig0020612:+114620 | None:intergenic |
| GGTTGTTGTTACAGAAACGA+AGG | 0.621147 | tig0020612:-117328 | Msa1383830:CDS |
| AAACTTGTAAGGGGCACATG+AGG | 0.627146 | tig0020612:-114594 | Msa1383830:three_prime_UTR |
| CGAGAAGCTGAAGTGGCACG+AGG | 0.633535 | tig0020612:+117594 | None:intergenic |
| ATCTGAAAATTCGAGCTCTG+AGG | 0.636255 | tig0020612:-114732 | Msa1383830:CDS |
| AGGCTTGCTTCCTAAAGAGG+TGG | 0.651439 | tig0020612:-114966 | Msa1383830:CDS |
| GGTGACACAAAACTTGTAAG+GGG | 0.653765 | tig0020612:-114603 | Msa1383830:three_prime_UTR |
| ATCGATTCTAAGGTTCAATG+TGG | 0.658585 | tig0020612:+117775 | None:intergenic |
| ATGGAAGGTGAAGATGAACA+AGG | 0.690504 | tig0020612:+117798 | None:intergenic |
| GTTATGCAAACCTCTGCAGG+CGG | 0.693835 | tig0020612:+117258 | None:intergenic |
| TCACCAACAACAAATGCCGG+GGG | 0.698115 | tig0020612:+114621 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTATATACAGTTTA+AGG | - | tig0020612:116053-116072 | Msa1383830:intron | 10.0% |
| !!! | CTTTTTTTTACTTTTCTTTT+GGG | - | tig0020612:116240-116259 | Msa1383830:intron | 15.0% |
| !!! | TTTTTTTTACTTTTCTTTTG+GGG | - | tig0020612:116241-116260 | Msa1383830:intron | 15.0% |
| !!! | ATTACATTCTTTTAGATATT+TGG | + | tig0020612:117098-117117 | None:intergenic | 15.0% |
| !! | ATCCTAATATTTAAAAATGT+TGG | - | tig0020612:117776-117795 | Msa1383830:five_prime_UTR | 15.0% |
| !!! | TACCAACATTTTTAAATATT+AGG | + | tig0020612:117781-117800 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTCTCTTGTTTT+CGG | + | tig0020612:114358-114377 | None:intergenic | 20.0% |
| !!! | CTATTTTAGAAATGTATGTT+CGG | - | tig0020612:114789-114808 | Msa1383830:CDS | 20.0% |
| !! | AATTGCAATTCATCATATTT+AGG | - | tig0020612:115181-115200 | Msa1383830:intron | 20.0% |
| !! | ATTGCAATTCATCATATTTA+GGG | - | tig0020612:115182-115201 | Msa1383830:intron | 20.0% |
| !! | ATTAAGATGTTTATCCAAAT+AGG | - | tig0020612:115426-115445 | Msa1383830:intron | 20.0% |
| !! | AAAATTGTTAAAGTCCTATT+TGG | + | tig0020612:115443-115462 | None:intergenic | 20.0% |
| !!! | AATAGGACTTTAACAATTTT+AGG | - | tig0020612:115443-115462 | Msa1383830:intron | 20.0% |
| !!! | GCTTTTTTTTACTTTTCTTT+TGG | - | tig0020612:116239-116258 | Msa1383830:intron | 20.0% |
| !!! | ACCAATTTAAAATGATATGA+GGG | + | tig0020612:116877-116896 | None:intergenic | 20.0% |
| !!! | AACCAATTTAAAATGATATG+AGG | + | tig0020612:116878-116897 | None:intergenic | 20.0% |
| !! | TTTCTTAATTGTAACAGATT+TGG | + | tig0020612:117368-117387 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTCTCTTGTTTTC+GGG | + | tig0020612:114357-114376 | None:intergenic | 25.0% |
| ! | AACATAAAAACGAACTGAAA+AGG | + | tig0020612:115012-115031 | None:intergenic | 25.0% |
| ! | AATGTAGCTTATAGCTTATA+CGG | - | tig0020612:115308-115327 | Msa1383830:intron | 25.0% |
| !!! | ACTTTAACAATTTTAGGAGT+TGG | - | tig0020612:115449-115468 | Msa1383830:intron | 25.0% |
| ! | TAAGTTTAATTGCTAGACTT+TGG | - | tig0020612:115474-115493 | Msa1383830:intron | 25.0% |
| ! | GCAATTTAATATATTTCCAG+GGG | + | tig0020612:115986-116005 | None:intergenic | 25.0% |
| ! | CGCAATTTAATATATTTCCA+GGG | + | tig0020612:115987-116006 | None:intergenic | 25.0% |
| ! | ATATAATATATAACCCTGTG+AGG | + | tig0020612:116045-116064 | None:intergenic | 25.0% |
| !! | ATGTGTAATGACTTGTATTT+AGG | - | tig0020612:116079-116098 | Msa1383830:intron | 25.0% |
| ! | CAAATCAAATATAGACAGTA+AGG | + | tig0020612:116381-116400 | None:intergenic | 25.0% |
| !! | GTTAAGTTGTTTATATCCTT+TGG | - | tig0020612:116456-116475 | Msa1383830:intron | 25.0% |
| ! | GTTTATATCCTTTGGATTAA+CGG | - | tig0020612:116464-116483 | Msa1383830:intron | 25.0% |
| !!! | TTTTGTTGTTTTCTTGTCTT+AGG | - | tig0020612:116490-116509 | Msa1383830:intron | 25.0% |
| !!! | GTTTGATTTGTTAACTATGA+AGG | - | tig0020612:116611-116630 | Msa1383830:intron | 25.0% |
| ! | TTGAAACATAAGACAAGTAT+AGG | - | tig0020612:116681-116700 | Msa1383830:intron | 25.0% |
| !!! | TGAGCTTTGTTATTTGATTT+TGG | - | tig0020612:116714-116733 | Msa1383830:intron | 25.0% |
| !!! | GAGCTTTGTTATTTGATTTT+GGG | - | tig0020612:116715-116734 | Msa1383830:intron | 25.0% |
| !!! | AGCTTTGTTATTTGATTTTG+GGG | - | tig0020612:116716-116735 | Msa1383830:intron | 25.0% |
| !! | CCAATTTAAAATGATATGAG+GGG | + | tig0020612:116876-116895 | None:intergenic | 25.0% |
| !!! | AGGTTGTCTTGTTTAAATAA+GGG | + | tig0020612:117006-117025 | None:intergenic | 25.0% |
| !! | TCTTTTTAACGGAAGAATTT+GGG | + | tig0020612:117405-117424 | None:intergenic | 25.0% |
| !! | TTCTTTTTAACGGAAGAATT+TGG | + | tig0020612:117406-117425 | None:intergenic | 25.0% |
| ! | AACAAAAAAGAAGAGAAAAG+TGG | - | tig0020612:117540-117559 | Msa1383830:CDS | 25.0% |
| ! | TTGCATAATTGACGAATTAA+AGG | + | tig0020612:117727-117746 | None:intergenic | 25.0% |
| ! | ATTCCTCTCCAAAAAAATTA+GGG | + | tig0020612:117758-117777 | None:intergenic | 25.0% |
| ! | ATAAATTGCATTTAGCAGAA+AGG | - | tig0020612:117819-117838 | Msa1383830:five_prime_UTR | 25.0% |
| ! | TTTGTGAACAATCGATTCTA+AGG | + | tig0020612:114456-114475 | None:intergenic | 30.0% |
| !! | TTGGATATCTTTTTGGAGAT+AGG | + | tig0020612:114714-114733 | None:intergenic | 30.0% |
| !!! | CTTGGTTTTGGATATCTTTT+TGG | + | tig0020612:114721-114740 | None:intergenic | 30.0% |
| CAAAAAGATATCCAAAACCA+AGG | - | tig0020612:114719-114738 | Msa1383830:CDS | 30.0% | |
| ! | AGAATTTCGATTTTGTACCT+TGG | + | tig0020612:114739-114758 | None:intergenic | 30.0% |
| AGAAGTGAAGAAAAAGAAGA+AGG | - | tig0020612:114851-114870 | Msa1383830:CDS | 30.0% | |
| AAAGAAGAAGGTAAAGAAAG+AGG | - | tig0020612:114863-114882 | Msa1383830:CDS | 30.0% | |
| GAAGGTTAAGAAAGTAAAGA+AGG | - | tig0020612:114908-114927 | Msa1383830:CDS | 30.0% | |
| AAGAAGGTTTATGATTTACC+TGG | - | tig0020612:114924-114943 | Msa1383830:CDS | 30.0% | |
| !!! | TTTTTTAGAGAGATCCTTCT+AGG | - | tig0020612:115053-115072 | Msa1383830:intron | 30.0% |
| !! | TTTTTAGAGAGATCCTTCTA+GGG | - | tig0020612:115054-115073 | Msa1383830:intron | 30.0% |
| AACAGAAACATAAGCAGAAT+AGG | + | tig0020612:115150-115169 | None:intergenic | 30.0% | |
| ! | CAATTCATCATATTTAGGGT+CGG | - | tig0020612:115186-115205 | Msa1383830:intron | 30.0% |
| AGCTACATTCATAAACTACA+TGG | + | tig0020612:115297-115316 | None:intergenic | 30.0% | |
| CACTTCATAATTCACATTCA+TGG | + | tig0020612:115522-115541 | None:intergenic | 30.0% | |
| TACTTGTGAATTCGATTAAG+AGG | - | tig0020612:115598-115617 | Msa1383830:intron | 30.0% | |
| AAAGTGCATTTGAATGGAAA+GGG | + | tig0020612:115832-115851 | None:intergenic | 30.0% | |
| TTGTACAAAGTGCATTTGAA+TGG | + | tig0020612:115838-115857 | None:intergenic | 30.0% | |
| !! | AAAAGTACTCTTTGAGTCTA+AGG | + | tig0020612:115936-115955 | None:intergenic | 30.0% |
| GCGCAATTTAATATATTTCC+AGG | + | tig0020612:115988-116007 | None:intergenic | 30.0% | |
| ! | ATGCTATTATTTTCCTCACA+GGG | - | tig0020612:116029-116048 | Msa1383830:intron | 30.0% |
| TAAAACCAGAAGCCAATTTA+AGG | - | tig0020612:116102-116121 | Msa1383830:intron | 30.0% | |
| AATCACTTCTGTCCTTAAAT+TGG | + | tig0020612:116117-116136 | None:intergenic | 30.0% | |
| AGAATTTACACAAACACAAG+GGG | + | tig0020612:116144-116163 | None:intergenic | 30.0% | |
| GAGAATTTACACAAACACAA+GGG | + | tig0020612:116145-116164 | None:intergenic | 30.0% | |
| AGAGAATTTACACAAACACA+AGG | + | tig0020612:116146-116165 | None:intergenic | 30.0% | |
| GTGTAAATTCTCTCAAATGA+TGG | - | tig0020612:116153-116172 | Msa1383830:intron | 30.0% | |
| CAAAATAACCGTTAATCCAA+AGG | + | tig0020612:116475-116494 | None:intergenic | 30.0% | |
| !! | TCTTAGGTCAGAGTTATTTT+AGG | - | tig0020612:116506-116525 | Msa1383830:intron | 30.0% |
| TAACAAATCAAACACCTGTT+AGG | + | tig0020612:116604-116623 | None:intergenic | 30.0% | |
| ! | AGGTGGAGATTTTTATGTTT+TGG | + | tig0020612:116781-116800 | None:intergenic | 30.0% |
| ! | TTTAAAATGATATGAGGGGA+TGG | + | tig0020612:116872-116891 | None:intergenic | 30.0% |
| ! | CCCCTCATATCATTTTAAAT+TGG | - | tig0020612:116873-116892 | Msa1383830:intron | 30.0% |
| ATGCTCGTATTATAGTCTAA+TGG | - | tig0020612:116974-116993 | Msa1383830:intron | 30.0% | |
| !! | CAGGTTGTCTTGTTTAAATA+AGG | + | tig0020612:117007-117026 | None:intergenic | 30.0% |
| GAAATGTGTATCATCAAAAC+TGG | - | tig0020612:117118-117137 | Msa1383830:CDS | 30.0% | |
| !!! | ATAGAGCGTAGAAGATTTTT+TGG | - | tig0020612:117193-117212 | Msa1383830:intron | 30.0% |
| ! | CTTTTTAACGGAAGAATTTG+GGG | + | tig0020612:117404-117423 | None:intergenic | 30.0% |
| !!! | GTTTGTTGGCTTCTTTTTAA+CGG | + | tig0020612:117416-117435 | None:intergenic | 30.0% |
| ! | ATTTTCAGATTTGTGCTTCT+TGG | + | tig0020612:117476-117495 | None:intergenic | 30.0% |
| !! | GATGATTCTGATTTTGACAT+TGG | - | tig0020612:117511-117530 | Msa1383830:CDS | 30.0% |
| !!! | ACAATCCACCCTAATTTTTT+TGG | - | tig0020612:117747-117766 | Msa1383830:exon | 30.0% |
| GATTCCTCTCCAAAAAAATT+AGG | + | tig0020612:117759-117778 | None:intergenic | 30.0% | |
| !! | ATTCTAAGGTTCAATGTGGA+TGG | + | tig0020612:114442-114461 | None:intergenic | 35.0% |
| !! | ATCGATTCTAAGGTTCAATG+TGG | + | tig0020612:114446-114465 | None:intergenic | 35.0% |
| !!! | TTGTCGTCTTGTTTTTTCAC+AGG | + | tig0020612:114501-114520 | None:intergenic | 35.0% |
| !!! | AGTTTTGAACCCTTAGAAAG+GGG | + | tig0020612:114570-114589 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAACCCTTAGAAA+GGG | + | tig0020612:114571-114590 | None:intergenic | 35.0% |
| !!! | TGAGTTTTGAACCCTTAGAA+AGG | + | tig0020612:114572-114591 | None:intergenic | 35.0% |
| ! | TCGATTTTGTACCTTGGTTT+TGG | + | tig0020612:114733-114752 | None:intergenic | 35.0% |
| !! | TTAGAGTATTGTGCTGTGTT+AGG | - | tig0020612:114818-114837 | Msa1383830:CDS | 35.0% |
| ACAAATTCCAACTAGCGAAA+TGG | - | tig0020612:115099-115118 | Msa1383830:intron | 35.0% | |
| !!! | TTGTGACTTTTGAGACTGTT+TGG | - | tig0020612:115240-115259 | Msa1383830:intron | 35.0% |
| TAAACTACATGGAGAGCTTA+TGG | + | tig0020612:115286-115305 | None:intergenic | 35.0% | |
| ACTGATAAAATGAGACCCTA+AGG | + | tig0020612:115745-115764 | None:intergenic | 35.0% | |
| CAAAGTGCATTTGAATGGAA+AGG | + | tig0020612:115833-115852 | None:intergenic | 35.0% | |
| GGCTCACATTCAAACATAAA+GGG | + | tig0020612:115915-115934 | None:intergenic | 35.0% | |
| AGGCTCACATTCAAACATAA+AGG | + | tig0020612:115916-115935 | None:intergenic | 35.0% | |
| ! | CATGCTATTATTTTCCTCAC+AGG | - | tig0020612:116028-116047 | Msa1383830:intron | 35.0% |
| GAGGTTTAATCATGCTGTTA+CGG | - | tig0020612:116205-116224 | Msa1383830:intron | 35.0% | |
| AACAAGCGAACAAATGCATA+AGG | + | tig0020612:116358-116377 | None:intergenic | 35.0% | |
| AAAGAGTGATGTCAGATCTA+GGG | + | tig0020612:116422-116441 | None:intergenic | 35.0% | |
| CATGGAGAATACACAGAAAA+AGG | + | tig0020612:116801-116820 | None:intergenic | 35.0% | |
| TAAATTGGTTGTGCTGTACA+TGG | - | tig0020612:116888-116907 | Msa1383830:intron | 35.0% | |
| ACAATACAATGCCAGTAACT+GGG | + | tig0020612:116951-116970 | None:intergenic | 35.0% | |
| AACAATACAATGCCAGTAAC+TGG | + | tig0020612:116952-116971 | None:intergenic | 35.0% | |
| CTACCAGACAAGATAAGAAA+AGG | + | tig0020612:117055-117074 | None:intergenic | 35.0% | |
| TTCTTATCTTGTCTGGTAGA+AGG | - | tig0020612:117056-117075 | Msa1383830:intron | 35.0% | |
| GTAGAAGGAGTAAAAGCTAT+CGG | - | tig0020612:117071-117090 | Msa1383830:intron | 35.0% | |
| !!! | TTTTGCAATGTTTTTTCCCC+CGG | - | tig0020612:117581-117600 | Msa1383830:CDS | 35.0% |
| ! | TTGGTGACACAAAACTTGTA+AGG | - | tig0020612:117613-117632 | Msa1383830:CDS | 35.0% |
| TGGTGACACAAAACTTGTAA+GGG | - | tig0020612:117614-117633 | Msa1383830:CDS | 35.0% | |
| ! | GACATAAGCGATTCTGAAGA+AGG | - | tig0020612:114379-114398 | Msa1383830:three_prime_UTR | 40.0% |
| GGTGAAGATGAACAAGGTTT+GGG | + | tig0020612:114417-114436 | None:intergenic | 40.0% | |
| AGGTGAAGATGAACAAGGTT+TGG | + | tig0020612:114418-114437 | None:intergenic | 40.0% | |
| ATGGAAGGTGAAGATGAACA+AGG | + | tig0020612:114423-114442 | None:intergenic | 40.0% | |
| TAAGGTTCAATGTGGATGGA+AGG | + | tig0020612:114438-114457 | None:intergenic | 40.0% | |
| ACAGGTTTCGAATCTTCAGA+AGG | + | tig0020612:114483-114502 | None:intergenic | 40.0% | |
| AAAAAAGCCGCAAAACCCAA+CGG | - | tig0020612:114540-114559 | Msa1383830:three_prime_UTR | 40.0% | |
| TTAGAAAGGGGTTTACCGTT+GGG | + | tig0020612:114558-114577 | None:intergenic | 40.0% | |
| AACGGTAAACCCCTTTCTAA+GGG | - | tig0020612:114558-114577 | Msa1383830:three_prime_UTR | 40.0% | |
| TTCTCGCTCCAAAGTTATGA+GGG | - | tig0020612:114641-114660 | Msa1383830:three_prime_UTR | 40.0% | |
| CTTGAGTTCCCTCATAACTT+TGG | + | tig0020612:114652-114671 | None:intergenic | 40.0% | |
| CAAAGTTATGAGGGAACTCA+AGG | - | tig0020612:114650-114669 | Msa1383830:three_prime_UTR | 40.0% | |
| GAAGGTAAAGAAAGAGGAAG+AGG | - | tig0020612:114869-114888 | Msa1383830:CDS | 40.0% | |
| ! | GGTTGTTGTTACAGAAACGA+AGG | - | tig0020612:114890-114909 | Msa1383830:CDS | 40.0% |
| ATTGTTATGCAAACCTCTGC+AGG | + | tig0020612:114966-114985 | None:intergenic | 40.0% | |
| !! | ATTTGTGCCATTTCGCTAGT+TGG | + | tig0020612:115109-115128 | None:intergenic | 40.0% |
| CAAATCTGGTGAGTTCTCAA+CGG | - | tig0020612:115124-115143 | Msa1383830:intron | 40.0% | |
| ! | TGGTGATAGTGTTCTTGCAA+GGG | + | tig0020612:115502-115521 | None:intergenic | 40.0% |
| ! | ATGGTGATAGTGTTCTTGCA+AGG | + | tig0020612:115503-115522 | None:intergenic | 40.0% |
| TTGTCTTCCATTCACACAGT+TGG | + | tig0020612:115647-115666 | None:intergenic | 40.0% | |
| TTTGTTCCACGACACTTGTT+TGG | - | tig0020612:115690-115709 | Msa1383830:intron | 40.0% | |
| TTCAAACCTCCAAATGCCTT+AGG | - | tig0020612:115726-115745 | Msa1383830:intron | 40.0% | |
| TCAAACCTCCAAATGCCTTA+GGG | - | tig0020612:115727-115746 | Msa1383830:intron | 40.0% | |
| ! | AAATGAGACCCTAAGGCATT+TGG | + | tig0020612:115738-115757 | None:intergenic | 40.0% |
| AGTGAGCTTAATTCCCTGTA+CGG | - | tig0020612:115762-115781 | Msa1383830:intron | 40.0% | |
| AACCAATTCTACACCGTACA+GGG | + | tig0020612:115778-115797 | None:intergenic | 40.0% | |
| AAACCAATTCTACACCGTAC+AGG | + | tig0020612:115779-115798 | None:intergenic | 40.0% | |
| ! | GGTTTTGCTGATGTGTACAA+AGG | - | tig0020612:115794-115813 | Msa1383830:intron | 40.0% |
| TAATATATTTCCAGGGGCCT+GGG | + | tig0020612:115980-115999 | None:intergenic | 40.0% | |
| TTAATATATTTCCAGGGGCC+TGG | + | tig0020612:115981-116000 | None:intergenic | 40.0% | |
| ! | TCTGTCCTTAAATTGGCTTC+TGG | + | tig0020612:116110-116129 | None:intergenic | 40.0% |
| CTCTCAAATGATGGTTGTGA+TGG | - | tig0020612:116162-116181 | Msa1383830:intron | 40.0% | |
| !!! | CCTCGCATAGTTTTGTTTTC+AGG | + | tig0020612:116189-116208 | None:intergenic | 40.0% |
| CCTGAAAACAAAACTATGCG+AGG | - | tig0020612:116186-116205 | Msa1383830:intron | 40.0% | |
| GTGTATGATTATCTGCGAGT+TGG | + | tig0020612:116286-116305 | None:intergenic | 40.0% | |
| ACTCGCAGATAATCATACAC+CGG | - | tig0020612:116286-116305 | Msa1383830:intron | 40.0% | |
| AAATGCATAAGGCCTGATAG+TGG | + | tig0020612:116347-116366 | None:intergenic | 40.0% | |
| CAAAGAGTGATGTCAGATCT+AGG | + | tig0020612:116423-116442 | None:intergenic | 40.0% | |
| GTTAGGTAATTGCAACTGCA+AGG | + | tig0020612:116587-116606 | None:intergenic | 40.0% | |
| TGCAGTTGCAATTACCTAAC+AGG | - | tig0020612:116587-116606 | Msa1383830:intron | 40.0% | |
| GGAGAATACACAGAAAAAGG+TGG | + | tig0020612:116798-116817 | None:intergenic | 40.0% | |
| TATGAGGGGATGGAATAACA+GGG | + | tig0020612:116862-116881 | None:intergenic | 40.0% | |
| ATATGAGGGGATGGAATAAC+AGG | + | tig0020612:116863-116882 | None:intergenic | 40.0% | |
| AGGAAAATTCAATCTGCAGC+AGG | + | tig0020612:117026-117045 | None:intergenic | 40.0% | |
| AAGATAAGAAAAGGCGGGAA+AGG | + | tig0020612:117046-117065 | None:intergenic | 40.0% | |
| CAGACAAGATAAGAAAAGGC+GGG | + | tig0020612:117051-117070 | None:intergenic | 40.0% | |
| CCAGACAAGATAAGAAAAGG+CGG | + | tig0020612:117052-117071 | None:intergenic | 40.0% | |
| ACTTTCTTTGCCACCTCTTT+AGG | + | tig0020612:117265-117284 | None:intergenic | 40.0% | |
| ACAGCAGTTACAGACTTAAC+AGG | + | tig0020612:117334-117353 | None:intergenic | 40.0% | |
| TGCTTTGATGTGGAGTTTGT+TGG | + | tig0020612:117430-117449 | None:intergenic | 40.0% | |
| TCAGATTTGTGCTTCTTGGT+TGG | + | tig0020612:117472-117491 | None:intergenic | 40.0% | |
| ATCTGAAAATTCGAGCTCTG+AGG | - | tig0020612:117486-117505 | Msa1383830:intron | 40.0% | |
| GGTGACACAAAACTTGTAAG+GGG | - | tig0020612:117615-117634 | Msa1383830:CDS | 40.0% | |
| ACGAATTAAAGGTCTACAGC+AGG | + | tig0020612:117716-117735 | None:intergenic | 40.0% | |
| CCTCTCCAAAAAAATTAGGG+TGG | + | tig0020612:117755-117774 | None:intergenic | 40.0% | |
| !!! | CCACCCTAATTTTTTTGGAG+AGG | - | tig0020612:117752-117771 | Msa1383830:exon | 40.0% |
| CTTAGAAAGGGGTTTACCGT+TGG | + | tig0020612:114559-114578 | None:intergenic | 45.0% | |
| CAACGGTAAACCCCTTTCTA+AGG | - | tig0020612:114557-114576 | Msa1383830:three_prime_UTR | 45.0% | |
| CTTCTCGCTCCAAAGTTATG+AGG | - | tig0020612:114640-114659 | Msa1383830:three_prime_UTR | 45.0% | |
| TTTGTCATCGTCGTCTTCGT+CGG | + | tig0020612:114691-114710 | None:intergenic | 45.0% | |
| ! | TGTGCTGTGTTAGGTTGTGA+AGG | - | tig0020612:114827-114846 | Msa1383830:CDS | 45.0% |
| GTCTCGTAGAAAACCCTAGA+AGG | + | tig0020612:115070-115089 | None:intergenic | 45.0% | |
| CTAGCGAAATGGCACAAATC+TGG | - | tig0020612:115110-115129 | Msa1383830:intron | 45.0% | |
| GTTTCTCAGTCTCTTCTGAG+TGG | + | tig0020612:115565-115584 | None:intergenic | 45.0% | |
| TGACATGCCAACTGTGTGAA+TGG | - | tig0020612:115637-115656 | Msa1383830:intron | 45.0% | |
| ! | TACAGTCCAAACAAGTGTCG+TGG | + | tig0020612:115699-115718 | None:intergenic | 45.0% |
| TTCCCTGTACGGTGTAGAAT+TGG | - | tig0020612:115773-115792 | Msa1383830:intron | 45.0% | |
| ! | TTATCTGCGAGTTGGAATGC+TGG | + | tig0020612:116278-116297 | None:intergenic | 45.0% |
| TAGAACCGCTAGGAACTACA+GGG | + | tig0020612:116312-116331 | None:intergenic | 45.0% | |
| TTAGAACCGCTAGGAACTAC+AGG | + | tig0020612:116313-116332 | None:intergenic | 45.0% | |
| ! | GCATGCAATTTAGAACCGCT+AGG | + | tig0020612:116322-116341 | None:intergenic | 45.0% |
| AATTGCATGCCACCACTATC+AGG | - | tig0020612:116332-116351 | Msa1383830:intron | 45.0% | |
| GGGAAGAGAGACAAGAAAAG+AGG | + | tig0020612:116841-116860 | None:intergenic | 45.0% | |
| ATGAGGGGATGGAATAACAG+GGG | + | tig0020612:116861-116880 | None:intergenic | 45.0% | |
| AGTTGTCGTAACCCAGTTAC+TGG | - | tig0020612:116937-116956 | Msa1383830:intron | 45.0% | |
| ! | CCGCCTTTTCTTATCTTGTC+TGG | - | tig0020612:117049-117068 | Msa1383830:intron | 45.0% |
| ! | TGATTGCAACTGCAGGTTGA+TGG | - | tig0020612:117225-117244 | Msa1383830:intron | 45.0% |
| !! | AACTGCAGGTTGATGGAATC+AGG | - | tig0020612:117232-117251 | Msa1383830:intron | 45.0% |
| ! | ATCAGGCTTGCTTCCTAAAG+AGG | - | tig0020612:117249-117268 | Msa1383830:intron | 45.0% |
| AAAGAAAGCTCTGCTGCAGA+AGG | - | tig0020612:117300-117319 | Msa1383830:CDS | 45.0% | |
| GGAGTTTGTCTGCTTTGATG+TGG | + | tig0020612:117440-117459 | None:intergenic | 45.0% | |
| TGTCACCAACAACAAATGCC+GGG | + | tig0020612:117602-117621 | None:intergenic | 45.0% | |
| GTGTCACCAACAACAAATGC+CGG | + | tig0020612:117603-117622 | None:intergenic | 45.0% | |
| ! | AAACTTGTAAGGGGCACATG+AGG | - | tig0020612:117624-117643 | Msa1383830:CDS | 45.0% |
| !! | AATAAAAAAAAAAAAAAACT+AGG | + | tig0020612:114766-114785 | None:intergenic | 5.0% |
| !!! | CTCTCTTGTTTTCGGGACTC+CGG | + | tig0020612:114350-114369 | None:intergenic | 50.0% |
| ! | GGGTTTACCGTTGGGTTTTG+CGG | + | tig0020612:114550-114569 | None:intergenic | 50.0% |
| ! | TTTGGAGCGAGAAGCTGAAG+TGG | + | tig0020612:114634-114653 | None:intergenic | 50.0% |
| GTTATGCAAACCTCTGCAGG+CGG | + | tig0020612:114963-114982 | None:intergenic | 50.0% | |
| ! | TGAGACCCTAAGGCATTTGG+AGG | + | tig0020612:115735-115754 | None:intergenic | 50.0% |
| TATAACACCAAGCCTAGCCC+AGG | - | tig0020612:115960-115979 | Msa1383830:intron | 50.0% | |
| !! | TGCATAAGGCCTGATAGTGG+TGG | + | tig0020612:116344-116363 | None:intergenic | 50.0% |
| TCTCCATGACCTTTACCCCA+AGG | - | tig0020612:116813-116832 | Msa1383830:intron | 50.0% | |
| !! | ACAAGAAAAGAGGCGCCTTG+GGG | + | tig0020612:116831-116850 | None:intergenic | 50.0% |
| !! | GACAAGAAAAGAGGCGCCTT+GGG | + | tig0020612:116832-116851 | None:intergenic | 50.0% |
| !! | AGACAAGAAAAGAGGCGCCT+TGG | + | tig0020612:116833-116852 | None:intergenic | 50.0% |
| ! | GCGTTACTGATTGCAACTGC+AGG | - | tig0020612:117218-117237 | Msa1383830:intron | 50.0% |
| ! | AGGCTTGCTTCCTAAAGAGG+TGG | - | tig0020612:117252-117271 | Msa1383830:intron | 50.0% |
| ! | CGGAAGAATTTGGGGTAGCT+GGG | + | tig0020612:117396-117415 | None:intergenic | 50.0% |
| ! | ACGGAAGAATTTGGGGTAGC+TGG | + | tig0020612:117397-117416 | None:intergenic | 50.0% |
| !! | CTTCTTGGTTGGCTTCGATG+TGG | + | tig0020612:117461-117480 | None:intergenic | 50.0% |
| !! | TTTCCCCCGGCATTTGTTGT+TGG | - | tig0020612:117594-117613 | Msa1383830:CDS | 50.0% |
| TCACCAACAACAAATGCCGG+GGG | + | tig0020612:117600-117619 | None:intergenic | 50.0% | |
| GTCACCAACAACAAATGCCG+GGG | + | tig0020612:117601-117620 | None:intergenic | 50.0% | |
| GCTGAAGTGGCACGAGGAAT+GGG | + | tig0020612:114621-114640 | None:intergenic | 55.0% | |
| AGCTGAAGTGGCACGAGGAA+TGG | + | tig0020612:114622-114641 | None:intergenic | 55.0% | |
| !! | AAAGAGGCGCCTTGGGGTAA+AGG | + | tig0020612:116825-116844 | None:intergenic | 55.0% |
| ! | GTGGCACGAGGAATGGGTTC+AGG | + | tig0020612:114615-114634 | None:intergenic | 60.0% |
| CGAGAAGCTGAAGTGGCACG+AGG | + | tig0020612:114627-114646 | None:intergenic | 60.0% | |
| GGCGGATCACGTTTCTGTCC+AGG | + | tig0020612:114945-114964 | None:intergenic | 60.0% | |
| GAAACGTGATCCGCCTGCAG+AGG | - | tig0020612:114950-114969 | Msa1383830:CDS | 60.0% | |
| TATTTCCAGGGGCCTGGGCT+AGG | + | tig0020612:115975-115994 | None:intergenic | 60.0% | |
| ACCGGCCCTGTAGTTCCTAG+CGG | - | tig0020612:116304-116323 | Msa1383830:intron | 60.0% | |
| ACCGCTAGGAACTACAGGGC+CGG | + | tig0020612:116308-116327 | None:intergenic | 60.0% | |
| GCGCCTTGGGGTAAAGGTCA+TGG | + | tig0020612:116819-116838 | None:intergenic | 60.0% | |
| ! | CCAGGGGCCTGGGCTAGGCT+TGG | + | tig0020612:115970-115989 | None:intergenic | 75.0% |
| CCAAGCCTAGCCCAGGCCCC+TGG | - | tig0020612:115967-115986 | Msa1383830:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020612 | gene | 114347 | 117893 | 114347 | ID=Msa1383830;Name=Msa1383830 |
| tig0020612 | mRNA | 114347 | 117893 | 114347 | ID=Msa1383830-mRNA-1;Parent=Msa1383830;Name=Msa1383830-mRNA-1;_AED=0.05;_eAED=0.05;_QI=130|1|1|1|1|1|4|326|264 |
| tig0020612 | exon | 114347 | 115000 | 114347 | ID=Msa1383830-mRNA-1:exon:8787;Parent=Msa1383830-mRNA-1 |
| tig0020612 | exon | 117109 | 117179 | 117109 | ID=Msa1383830-mRNA-1:exon:8786;Parent=Msa1383830-mRNA-1 |
| tig0020612 | exon | 117269 | 117400 | 117269 | ID=Msa1383830-mRNA-1:exon:8785;Parent=Msa1383830-mRNA-1 |
| tig0020612 | exon | 117500 | 117893 | 117500 | ID=Msa1383830-mRNA-1:exon:8784;Parent=Msa1383830-mRNA-1 |
| tig0020612 | five_prime_UTR | 117764 | 117893 | 117764 | ID=Msa1383830-mRNA-1:five_prime_utr;Parent=Msa1383830-mRNA-1 |
| tig0020612 | CDS | 117500 | 117763 | 117500 | ID=Msa1383830-mRNA-1:cds;Parent=Msa1383830-mRNA-1 |
| tig0020612 | CDS | 117269 | 117400 | 117269 | ID=Msa1383830-mRNA-1:cds;Parent=Msa1383830-mRNA-1 |
| tig0020612 | CDS | 117109 | 117179 | 117109 | ID=Msa1383830-mRNA-1:cds;Parent=Msa1383830-mRNA-1 |
| tig0020612 | CDS | 114673 | 115000 | 114673 | ID=Msa1383830-mRNA-1:cds;Parent=Msa1383830-mRNA-1 |
| tig0020612 | three_prime_UTR | 114347 | 114672 | 114347 | ID=Msa1383830-mRNA-1:three_prime_utr;Parent=Msa1383830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
