AlfalfaGEDB | Msa0385300

M. sativa cultivar zhongmu-4 / Msa0385300

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385300	XP_003603764.2	91.667	264	21	1	1	264	1	263	3.45e-92	283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385300	B7FL43	91.667	264	21	1	1	264	1	263	1.65e-92	283

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003780	Msa0385300	0.823354	1.448767e-53	-8.615850e-47
Msa0029270	Msa0385300	0.817323	3.499645e-52	-8.615850e-47
Msa0032090	Msa0385300	0.843196	1.625315e-58	-8.615850e-47
Msa0032430	Msa0385300	0.840515	8.302449e-58	-8.615850e-47
Msa0040690	Msa0385300	0.812524	4.059930e-51	-8.615850e-47
Msa0074030	Msa0385300	0.822344	2.490432e-53	-8.615850e-47
Msa0079380	Msa0385300	0.821082	4.878442e-53	-8.615850e-47
Msa0127050	Msa0385300	0.806388	8.427673e-50	-8.615850e-47
Msa0146340	Msa0385300	0.803894	2.803647e-49	-8.615850e-47
Msa0172070	Msa0385300	0.843666	1.218117e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385300	MtrunA17_Chr3g0142711	91.667	264	21	1	1	264	1	263	3.18e-96	283
Msa0385300	MtrunA17_Chr3g0140151	51.961	102	47	1	117	218	97	196	1.62e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385300	AT1G19990.1	43.750	272	116	10	2	261	3	249	8.22e-37	131
Msa0385300	AT5G11600.2	55.814	86	38	0	106	191	108	193	1.69e-26	103
Msa0385300	AT5G11600.1	55.814	86	38	0	106	191	108	193	1.69e-26	103

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Find 65 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGTAAGGGGCACATG+AGG	0.627146	3_1:+88777957	Msa0385300:three_prime_UTR
AAAGAAAGCTCTGCAGCAGA+AGG	0.552066	3_1:+88777633	Msa0385300:CDS
AAAGAAGAAGGTAAAGAAAG+AGG	0.432786	3_1:+88775205	Msa0385300:CDS
AACGGTAAACCCCTTTCTAA+GGG	0.555197	3_1:+88774898	Msa0385300:CDS
AACTGCAGGTTGATGGAATC+AGG	0.375812	3_1:+88777565	Msa0385300:intron
AAGAAGGTTTATGATTTACC+TGG	0.546770	3_1:+88775266	Msa0385300:CDS
ACAAATTCCAACTAGCGAAA+TGG	0.472854	3_1:+88775441	Msa0385300:CDS
ACAGCAGTTACAGACTTAAC+AGG	0.336791	3_1:-88777664	None:intergenic
ACAGGTTTCGAATCTTCAGA+AGG	0.581427	3_1:-88774820	None:intergenic
ACGAATTAAAGGTCTACAGC+AGG	0.562539	3_1:-88778046	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAAGATATCCAAAACCA+AGG	+	chr3_1:88775059-88775078	Msa0385300:CDS	30.0%
AGAAGTGAAGAAAAAGAAGA+AGG	+	chr3_1:88775193-88775212	Msa0385300:CDS	30.0%
AAAGAAGAAGGTAAAGAAAG+AGG	+	chr3_1:88775205-88775224	Msa0385300:CDS	30.0%
GAAGGTTAAGAAAGTAAAGA+AGG	+	chr3_1:88775250-88775269	Msa0385300:CDS	30.0%
AAGAAGGTTTATGATTTACC+TGG	+	chr3_1:88775266-88775285	Msa0385300:CDS	30.0%
AACAGAAACATAAGCAGAAT+AGG	-	chr3_1:88775492-88775511	None:intergenic	30.0%
TAAATTACATGGAGAGCTTA+TGG	-	chr3_1:88775628-88775647	None:intergenic	30.0%
CACTTCATAATTCACATTCA+TGG	-	chr3_1:88775864-88775883	None:intergenic	30.0%
TACTTGTGAATTCGATTAAG+AGG	+	chr3_1:88775940-88775959	Msa0385300:intron	30.0%
AAAGTGCATTTGAATGGAAA+GGG	-	chr3_1:88776172-88776191	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	88774688	88778226	88774688	ID=Msa0385300;Name=Msa0385300
chr3_1	mRNA	88774688	88778226	88774688	ID=Msa0385300-mRNA-1;Parent=Msa0385300;Name=Msa0385300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=129\|1\|1\|1\|1\|1\|4\|326\|264
chr3_1	exon	88774688	88775080	88774688	ID=Msa0385300-mRNA-1:exon:23956;Parent=Msa0385300-mRNA-1
chr3_1	exon	88775182	88775313	88775182	ID=Msa0385300-mRNA-1:exon:23957;Parent=Msa0385300-mRNA-1
chr3_1	exon	88775403	88775473	88775403	ID=Msa0385300-mRNA-1:exon:23958;Parent=Msa0385300-mRNA-1
chr3_1	exon	88777573	88778226	88777573	ID=Msa0385300-mRNA-1:exon:23959;Parent=Msa0385300-mRNA-1
chr3_1	five_prime_UTR	88774688	88774816	88774688	ID=Msa0385300-mRNA-1:five_prime_utr;Parent=Msa0385300-mRNA-1
chr3_1	CDS	88774817	88775080	88774817	ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1
chr3_1	CDS	88775182	88775313	88775182	ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1
chr3_1	CDS	88775403	88775473	88775403	ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1
chr3_1	CDS	88777573	88777900	88777573	ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1
chr3_1	three_prime_UTR	88777901	88778226	88777901	ID=Msa0385300-mRNA-1:three_prime_utr;Parent=Msa0385300-mRNA-1

Gene Sequence

>Msa0385300

ATGCCTTCTGAAGATTCGAAACCTGTGAAAAAACAAGACGACAACGACAAGATTTCTACTTTGAAAAAAGCCGCAAAACCCAACGGTAAACCCCTTTCTAAGGGTTCAAAACTCAAGAAATTATTCAAAGAAGAACCTGAACCCATTCCTCGTGCCACTTCAGCTTCTCGTTCCAAAGTTAAGAGGGAACTCAAGGACGATGATGATGACTCCGACGAAGACGACGATGACAAACCTATCTCCAAAAAGATATCCAAAACCAAGGTTGTGAAGGAAGAAGTGAAGAAAAAGAAGAAGGTAAAGAAAGAGGAAGAGGTTGTTGTTACAGAAACGAAGGTTAAGAAAGTAAAGAAGGTTTATGATTTACCTGGACAGAAACGTGATCCACCTGCAGAGAGAGATCCTTCTAGGGTTTTCTACGAGACTTTACATGAACAAATTCCAACTAGCGAAATGGCACAAATCTGGTTGATGGAATCAGGCTTGCTTCCTAAAGAGGTGGCAAAGAAAGTATTTGAGAAGAAGCAAAAGAAAGCTCTGCAGCAGAAGGTCTCTTCTCCTGTTAAGTCTGTAACTGCTGTGAAGAAAAGCACCAAATCTGTTACAATTAAGAAAGAATGCCCAGCTACCCCAAATTCTTCCGTTAAAAAGAAGCCAACAAACTCCACATCAAAGCAGACAAACTCCACATCGAAGCCAACCAAGAAGCACAAATCTGAAAATTCGAGCTCTGAGGATGATGATTCTGATTTTGACATTGGTTCAGCAACAAAAAAGAAGAGAAAAGTGGCTTAA

Protein sequence

>Msa0385300

MPSEDSKPVKKQDDNDKISTLKKAAKPNGKPLSKGSKLKKLFKEEPEPIPRATSASRSKVKRELKDDDDDSDEDDDDKPISKKISKTKVVKEEVKKKKKVKKEEEVVVTETKVKKVKKVYDLPGQKRDPPAERDPSRVFYETLHEQIPTSEMAQIWLMESGLLPKEVAKKVFEKKQKKALQQKVSSPVKSVTAVKKSTKSVTIKKECPATPNSSVKKKPTNSTSKQTNSTSKPTKKHKSENSSSEDDDSDFDIGSATKKKRKVA*