AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385300 MtrunA17_Chr3g0142711 91.667 264 21 1 1 264 1 263 3.18e-96 283
Msa0385300 MtrunA17_Chr3g0140151 51.961 102 47 1 117 218 97 196 1.62e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385300 AT1G19990.1 43.750 272 116 10 2 261 3 249 8.22e-37 131
Msa0385300 AT5G11600.2 55.814 86 38 0 106 191 108 193 1.69e-26 103
Msa0385300 AT5G11600.1 55.814 86 38 0 106 191 108 193 1.69e-26 103

Find 65 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATAATTGACGAATTAA+AGG 0.232622 3_1:-88778057 None:intergenic
ACTTTCTTTGCCACCTCTTT+AGG 0.245967 3_1:-88777595 None:intergenic
CAACGGTAAACCCCTTTCTA+AGG 0.258341 3_1:+88774897 Msa0385300:CDS
TTTCTTAATTGTAACAGATT+TGG 0.302366 3_1:-88777698 None:intergenic
ACAGCAGTTACAGACTTAAC+AGG 0.336791 3_1:-88777664 None:intergenic
TTTGTGAACAATCGATTCTA+AGG 0.355684 3_1:-88774793 None:intergenic
TGCTTTGATGTGGAGTTTGT+TGG 0.359320 3_1:-88777760 None:intergenic
ACGGAAGAATTTGGGGTAGC+TGG 0.368565 3_1:-88777727 None:intergenic
AACTGCAGGTTGATGGAATC+AGG 0.375812 3_1:+88777565 Msa0385300:intron
ATAATAACATAAATTGCATT+TGG 0.387140 3_1:+88778144 Msa0385300:three_prime_UTR
TTGGTGACACAAAACTTGTA+AGG 0.394895 3_1:+88777946 Msa0385300:three_prime_UTR
ATTTGTGCCATTTCGCTAGT+TGG 0.401961 3_1:-88775448 None:intergenic
CTAGCGAAATGGCACAAATC+TGG 0.411971 3_1:+88775452 Msa0385300:CDS
GTGGCACGAGGAATGGGTTC+AGG 0.420548 3_1:-88774952 None:intergenic
CTGGGGCAAAAGCATAAATC+TGG 0.420706 3_1:-88778206 None:intergenic
CTTCTCGTTCCAAAGTTAAG+AGG 0.423874 3_1:+88774980 Msa0385300:CDS
TGATTGCAACTGCAGGTTGA+TGG 0.428702 3_1:+88777558 Msa0385300:intron
TCAGATTTGTGCTTCTTGGT+TGG 0.428762 3_1:-88777802 None:intergenic
AAAGAAGAAGGTAAAGAAAG+AGG 0.432786 3_1:+88775205 Msa0385300:CDS
CTTGAGTTCCCTCTTAACTT+TGG 0.435585 3_1:-88774989 None:intergenic
AGCTGAAGTGGCACGAGGAA+TGG 0.440315 3_1:-88774959 None:intergenic
GTCTCGTAGAAAACCCTAGA+AGG 0.445303 3_1:-88775409 None:intergenic
ATAAATTGCATTTGGCAGAA+AGG 0.449679 3_1:+88778152 Msa0385300:three_prime_UTR
GGTGAAGATGAACAAGGTTT+GGG 0.454900 3_1:-88774754 None:intergenic
GAAGGTTAAGAAAGTAAAGA+AGG 0.462009 3_1:+88775250 Msa0385300:CDS
AGGTGAAGATGAACAAGGTT+TGG 0.463475 3_1:-88774755 None:intergenic
GAAGGTAAAGAAAGAGGAAG+AGG 0.464209 3_1:+88775211 Msa0385300:CDS
GCTGAAGTGGCACGAGGAAT+GGG 0.464474 3_1:-88774958 None:intergenic
CGGAAGAATTTGGGGTAGCT+GGG 0.468663 3_1:-88777726 None:intergenic
ACAAATTCCAACTAGCGAAA+TGG 0.472854 3_1:+88775441 Msa0385300:CDS
GACATAAGCGATTCTGAAGA+AGG 0.482635 3_1:+88774719 Msa0385300:five_prime_UTR
TTAGAAAGGGGTTTACCGTT+GGG 0.482681 3_1:-88774895 None:intergenic
GTGTCACCAACAACAAATGC+CGG 0.491011 3_1:-88777933 None:intergenic
TTTGTCATCGTCGTCTTCGT+CGG 0.494023 3_1:-88775028 None:intergenic
CTTAGAAAGGGGTTTACCGT+TGG 0.503604 3_1:-88774896 None:intergenic
GGTGGATCACGTTTCTGTCC+AGG 0.503762 3_1:-88775284 None:intergenic
ATCAGGCTTGCTTCCTAAAG+AGG 0.510477 3_1:+88777582 Msa0385300:CDS
ATTGTTATGCAAACCTCTGC+AGG 0.514578 3_1:-88775305 None:intergenic
TGTCACCAACAACAAATGCC+GGG 0.520299 3_1:-88777932 None:intergenic
TGTGCTGTGTTAGGTTGTGA+AGG 0.525327 3_1:+88775169 Msa0385300:intron
ATTCTAAGGTTCAATGTGGA+TGG 0.542258 3_1:-88774779 None:intergenic
AAGAAGGTTTATGATTTACC+TGG 0.546770 3_1:+88775266 Msa0385300:CDS
AAAGAAAGCTCTGCAGCAGA+AGG 0.552066 3_1:+88777633 Msa0385300:CDS
AACGGTAAACCCCTTTCTAA+GGG 0.555197 3_1:+88774898 Msa0385300:CDS
GGAGTTTGTCTGCTTTGATG+TGG 0.556824 3_1:-88777770 None:intergenic
TGGTGACACAAAACTTGTAA+GGG 0.558331 3_1:+88777947 Msa0385300:three_prime_UTR
CTTCTTGGTTGGCTTCGATG+TGG 0.562372 3_1:-88777791 None:intergenic
ACGAATTAAAGGTCTACAGC+AGG 0.562539 3_1:-88778046 None:intergenic
TTCTCGTTCCAAAGTTAAGA+GGG 0.573394 3_1:+88774981 Msa0385300:CDS
TAAGGTTCAATGTGGATGGA+AGG 0.579955 3_1:-88774775 None:intergenic
ACAGGTTTCGAATCTTCAGA+AGG 0.581427 3_1:-88774820 None:intergenic
CAAAGTTAAGAGGGAACTCA+AGG 0.601249 3_1:+88774990 Msa0385300:CDS
TTTGGAACGAGAAGCTGAAG+TGG 0.604596 3_1:-88774971 None:intergenic
GTCACCAACAACAAATGCCG+GGG 0.615591 3_1:-88777931 None:intergenic
GGTTGTTGTTACAGAAACGA+AGG 0.621147 3_1:+88775232 Msa0385300:CDS
AAACTTGTAAGGGGCACATG+AGG 0.627146 3_1:+88777957 Msa0385300:three_prime_UTR
GAAACGTGATCCACCTGCAG+AGG 0.633728 3_1:+88775292 Msa0385300:CDS
CGAGAAGCTGAAGTGGCACG+AGG 0.634997 3_1:-88774964 None:intergenic
ATCTGAAAATTCGAGCTCTG+AGG 0.636255 3_1:+88777819 Msa0385300:CDS
AGGCTTGCTTCCTAAAGAGG+TGG 0.651439 3_1:+88777585 Msa0385300:CDS
GTTATGCAAACCTCTGCAGG+TGG 0.653027 3_1:-88775302 None:intergenic
GGTGACACAAAACTTGTAAG+GGG 0.653765 3_1:+88777948 Msa0385300:three_prime_UTR
ATCGATTCTAAGGTTCAATG+TGG 0.658585 3_1:-88774783 None:intergenic
ATGGAAGGTGAAGATGAACA+AGG 0.690504 3_1:-88774760 None:intergenic
TCACCAACAACAAATGCCGG+GGG 0.698115 3_1:-88777930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTATATACAGTTTA+AGG + chr3_1:88776393-88776412 Msa0385300:intron 10.0%
!!! TTTTTTTTTACTTTTCTTTT+GGG + chr3_1:88776581-88776600 Msa0385300:intron 10.0%
!!! CTTTTTTTTTACTTTTCTTT+TGG + chr3_1:88776580-88776599 Msa0385300:intron 15.0%
!!! TTTTTTTTACTTTTCTTTTG+GGG + chr3_1:88776582-88776601 Msa0385300:intron 15.0%
!!! ATTACATTCTTTTAGATATT+TGG - chr3_1:88777431-88777450 None:intergenic 15.0%
!! ATCCTAATATTTAAAAATGT+TGG + chr3_1:88778109-88778128 Msa0385300:three_prime_UTR 15.0%
!!! TACCAACATTTTTAAATATT+AGG - chr3_1:88778114-88778133 None:intergenic 15.0%
!! ATAATAACATAAATTGCATT+TGG + chr3_1:88778144-88778163 Msa0385300:three_prime_UTR 15.0%
!!! TTTTTTTTCTCTCTTGTTTT+CGG - chr3_1:88774699-88774718 None:intergenic 20.0%
!!! CTATTTTAGAAATGTATGTT+CGG + chr3_1:88775131-88775150 Msa0385300:intron 20.0%
!! AATTGCAATTCATCATATTT+AGG + chr3_1:88775523-88775542 Msa0385300:intron 20.0%
!! ATTGCAATTCATCATATTTA+GGG + chr3_1:88775524-88775543 Msa0385300:intron 20.0%
!! ATTAAGATGTTTATCCAAAT+AGG + chr3_1:88775768-88775787 Msa0385300:intron 20.0%
!! AAAATTGTTAAAGTCCTATT+TGG - chr3_1:88775785-88775804 None:intergenic 20.0%
!!! AATAGGACTTTAACAATTTT+AGG + chr3_1:88775785-88775804 Msa0385300:intron 20.0%
!!! ACCAATTTAAAATGATATGA+GGG - chr3_1:88777210-88777229 None:intergenic 20.0%
!!! AACCAATTTAAAATGATATG+AGG - chr3_1:88777211-88777230 None:intergenic 20.0%
!! TTTCTTAATTGTAACAGATT+TGG - chr3_1:88777701-88777720 None:intergenic 20.0%
!!! TTTTTTTCTCTCTTGTTTTC+GGG - chr3_1:88774698-88774717 None:intergenic 25.0%
! AACATAAAAACGAACTGAAA+AGG - chr3_1:88775354-88775373 None:intergenic 25.0%
! AGCTACATTCATAAATTACA+TGG - chr3_1:88775639-88775658 None:intergenic 25.0%
! AATGTAGCTTATAGCTTATA+CGG + chr3_1:88775650-88775669 Msa0385300:intron 25.0%
!!! ACTTTAACAATTTTAGGAGT+TGG + chr3_1:88775791-88775810 Msa0385300:intron 25.0%
! TAAGTTTAATTGCTAGACTT+TGG + chr3_1:88775816-88775835 Msa0385300:intron 25.0%
! GCAATTTAATATATTTCCAG+GGG - chr3_1:88776326-88776345 None:intergenic 25.0%
! CGCAATTTAATATATTTCCA+GGG - chr3_1:88776327-88776346 None:intergenic 25.0%
! ATATAATATATAACCCTGTG+AGG - chr3_1:88776385-88776404 None:intergenic 25.0%
!! ATGTGTAATGACTTGTATTT+AGG + chr3_1:88776419-88776438 Msa0385300:intron 25.0%
! CAAATCAAATATAGACAGTA+AGG - chr3_1:88776722-88776741 None:intergenic 25.0%
!! GTTAAGTTGTTTATATCCTT+TGG + chr3_1:88776797-88776816 Msa0385300:intron 25.0%
! GTTTATATCCTTTGGATTAA+CGG + chr3_1:88776805-88776824 Msa0385300:intron 25.0%
!!! TTTTGTTGTTTTCTTGTCTT+AGG + chr3_1:88776831-88776850 Msa0385300:intron 25.0%
!!! GTTTGATTTGTTAACTATGA+AGG + chr3_1:88776944-88776963 Msa0385300:intron 25.0%
! TTGAAACATAAGACAAGTAT+AGG + chr3_1:88777014-88777033 Msa0385300:intron 25.0%
!!! TGAGCTTTGTTATTTGATTT+TGG + chr3_1:88777047-88777066 Msa0385300:intron 25.0%
!!! GAGCTTTGTTATTTGATTTT+GGG + chr3_1:88777048-88777067 Msa0385300:intron 25.0%
!!! AGCTTTGTTATTTGATTTTG+GGG + chr3_1:88777049-88777068 Msa0385300:intron 25.0%
!! CCAATTTAAAATGATATGAG+GGG - chr3_1:88777209-88777228 None:intergenic 25.0%
!!! AGGTTGTCTTGTTTAAATAA+GGG - chr3_1:88777339-88777358 None:intergenic 25.0%
!! TCTTTTTAACGGAAGAATTT+GGG - chr3_1:88777738-88777757 None:intergenic 25.0%
!! TTCTTTTTAACGGAAGAATT+TGG - chr3_1:88777739-88777758 None:intergenic 25.0%
! AACAAAAAAGAAGAGAAAAG+TGG + chr3_1:88777873-88777892 Msa0385300:CDS 25.0%
! TTGCATAATTGACGAATTAA+AGG - chr3_1:88778060-88778079 None:intergenic 25.0%
! ATTCCTCTCCAAAAAAATTA+GGG - chr3_1:88778091-88778110 None:intergenic 25.0%
! TTTGTGAACAATCGATTCTA+AGG - chr3_1:88774796-88774815 None:intergenic 30.0%
!! TTGGATATCTTTTTGGAGAT+AGG - chr3_1:88775054-88775073 None:intergenic 30.0%
!!! CTTGGTTTTGGATATCTTTT+TGG - chr3_1:88775061-88775080 None:intergenic 30.0%
CAAAAAGATATCCAAAACCA+AGG + chr3_1:88775059-88775078 Msa0385300:CDS 30.0%
! AGAATTTCGATTTTGTACCT+TGG - chr3_1:88775079-88775098 None:intergenic 30.0%
AGAAGTGAAGAAAAAGAAGA+AGG + chr3_1:88775193-88775212 Msa0385300:CDS 30.0%
AAAGAAGAAGGTAAAGAAAG+AGG + chr3_1:88775205-88775224 Msa0385300:CDS 30.0%
GAAGGTTAAGAAAGTAAAGA+AGG + chr3_1:88775250-88775269 Msa0385300:CDS 30.0%
AAGAAGGTTTATGATTTACC+TGG + chr3_1:88775266-88775285 Msa0385300:CDS 30.0%
!!! TTTTTTAGAGAGATCCTTCT+AGG + chr3_1:88775395-88775414 Msa0385300:intron 30.0%
!! TTTTTAGAGAGATCCTTCTA+GGG + chr3_1:88775396-88775415 Msa0385300:intron 30.0%
AACAGAAACATAAGCAGAAT+AGG - chr3_1:88775492-88775511 None:intergenic 30.0%
! CAATTCATCATATTTAGGGT+CGG + chr3_1:88775528-88775547 Msa0385300:intron 30.0%
TAAATTACATGGAGAGCTTA+TGG - chr3_1:88775628-88775647 None:intergenic 30.0%
CACTTCATAATTCACATTCA+TGG - chr3_1:88775864-88775883 None:intergenic 30.0%
TACTTGTGAATTCGATTAAG+AGG + chr3_1:88775940-88775959 Msa0385300:intron 30.0%
AAAGTGCATTTGAATGGAAA+GGG - chr3_1:88776172-88776191 None:intergenic 30.0%
TTGTACAAAGTGCATTTGAA+TGG - chr3_1:88776178-88776197 None:intergenic 30.0%
!! AAAAGTACTCTTTGAGTCTA+AGG - chr3_1:88776276-88776295 None:intergenic 30.0%
GCGCAATTTAATATATTTCC+AGG - chr3_1:88776328-88776347 None:intergenic 30.0%
! ATGCTATTATTTTCCTCACA+GGG + chr3_1:88776369-88776388 Msa0385300:intron 30.0%
TAAAACCAGAAGCCAATTTA+AGG + chr3_1:88776442-88776461 Msa0385300:intron 30.0%
AATCACTTCTGTCCTTAAAT+TGG - chr3_1:88776457-88776476 None:intergenic 30.0%
AGAATTTACACAAACACAAG+GGG - chr3_1:88776484-88776503 None:intergenic 30.0%
GAGAATTTACACAAACACAA+GGG - chr3_1:88776485-88776504 None:intergenic 30.0%
AGAGAATTTACACAAACACA+AGG - chr3_1:88776486-88776505 None:intergenic 30.0%
GTGTAAATTCTCTCAAATGA+TGG + chr3_1:88776493-88776512 Msa0385300:intron 30.0%
CAAAATAACCGTTAATCCAA+AGG - chr3_1:88776816-88776835 None:intergenic 30.0%
!! TCTTAGGTCAGAGTTATTTT+AGG + chr3_1:88776847-88776866 Msa0385300:intron 30.0%
TAACAAATCAAACACCTGTT+AGG - chr3_1:88776937-88776956 None:intergenic 30.0%
! AGGTGGAGATTTTTATGTTT+TGG - chr3_1:88777114-88777133 None:intergenic 30.0%
! TTTAAAATGATATGAGGGGA+TGG - chr3_1:88777205-88777224 None:intergenic 30.0%
! CCCCTCATATCATTTTAAAT+TGG + chr3_1:88777206-88777225 Msa0385300:intron 30.0%
ATGCTCGTATTATAGTCTAA+TGG + chr3_1:88777307-88777326 Msa0385300:intron 30.0%
!! CAGGTTGTCTTGTTTAAATA+AGG - chr3_1:88777340-88777359 None:intergenic 30.0%
GAAATGTGTATCATCAAAAC+TGG + chr3_1:88777451-88777470 Msa0385300:intron 30.0%
!!! ATAGAGCGTAGAAGATTTTT+TGG + chr3_1:88777526-88777545 Msa0385300:intron 30.0%
! CTTTTTAACGGAAGAATTTG+GGG - chr3_1:88777737-88777756 None:intergenic 30.0%
!!! GTTTGTTGGCTTCTTTTTAA+CGG - chr3_1:88777749-88777768 None:intergenic 30.0%
! ATTTTCAGATTTGTGCTTCT+TGG - chr3_1:88777809-88777828 None:intergenic 30.0%
!! GATGATTCTGATTTTGACAT+TGG + chr3_1:88777844-88777863 Msa0385300:CDS 30.0%
!!! ACAATCCACCCTAATTTTTT+TGG + chr3_1:88778080-88778099 Msa0385300:three_prime_UTR 30.0%
GATTCCTCTCCAAAAAAATT+AGG - chr3_1:88778092-88778111 None:intergenic 30.0%
ATAAATTGCATTTGGCAGAA+AGG + chr3_1:88778152-88778171 Msa0385300:three_prime_UTR 30.0%
!! ATTCTAAGGTTCAATGTGGA+TGG - chr3_1:88774782-88774801 None:intergenic 35.0%
!! ATCGATTCTAAGGTTCAATG+TGG - chr3_1:88774786-88774805 None:intergenic 35.0%
!!! TTGTCGTCTTGTTTTTTCAC+AGG - chr3_1:88774841-88774860 None:intergenic 35.0%
!!! AGTTTTGAACCCTTAGAAAG+GGG - chr3_1:88774910-88774929 None:intergenic 35.0%
!!! GAGTTTTGAACCCTTAGAAA+GGG - chr3_1:88774911-88774930 None:intergenic 35.0%
!!! TGAGTTTTGAACCCTTAGAA+AGG - chr3_1:88774912-88774931 None:intergenic 35.0%
TTCTCGTTCCAAAGTTAAGA+GGG + chr3_1:88774981-88775000 Msa0385300:CDS 35.0%
! TCGATTTTGTACCTTGGTTT+TGG - chr3_1:88775073-88775092 None:intergenic 35.0%
!! TTAGAGTATTGTGCTGTGTT+AGG + chr3_1:88775160-88775179 Msa0385300:intron 35.0%
ACAAATTCCAACTAGCGAAA+TGG + chr3_1:88775441-88775460 Msa0385300:CDS 35.0%
!!! TTGTGACTTTTGAGACTGTT+TGG + chr3_1:88775582-88775601 Msa0385300:intron 35.0%
AATTGTCTTCCATTCACAGT+TGG - chr3_1:88775989-88776008 None:intergenic 35.0%
ACTGATAAAATGAGACCCTA+AGG - chr3_1:88776085-88776104 None:intergenic 35.0%
CAAAGTGCATTTGAATGGAA+AGG - chr3_1:88776173-88776192 None:intergenic 35.0%
GGCTCACATTCAAACATAAA+GGG - chr3_1:88776255-88776274 None:intergenic 35.0%
AGGCTCACATTCAAACATAA+AGG - chr3_1:88776256-88776275 None:intergenic 35.0%
! CATGCTATTATTTTCCTCAC+AGG + chr3_1:88776368-88776387 Msa0385300:intron 35.0%
GAGGTTTAATCATGCTGTTA+CGG + chr3_1:88776545-88776564 Msa0385300:intron 35.0%
GTGTATGATTATCTACGAGT+TGG - chr3_1:88776627-88776646 None:intergenic 35.0%
ACTCGTAGATAATCATACAC+CGG + chr3_1:88776627-88776646 Msa0385300:intron 35.0%
AACAAGCGAACAAATGCATA+AGG - chr3_1:88776699-88776718 None:intergenic 35.0%
AAAGAGTGATGTCAGATCTA+GGG - chr3_1:88776763-88776782 None:intergenic 35.0%
CATGGAGAATACACAGAAAA+AGG - chr3_1:88777134-88777153 None:intergenic 35.0%
TAAATTGGTTGTGCTGTACA+TGG + chr3_1:88777221-88777240 Msa0385300:intron 35.0%
ACAATACAATGCCAGTAACT+GGG - chr3_1:88777284-88777303 None:intergenic 35.0%
AACAATACAATGCCAGTAAC+TGG - chr3_1:88777285-88777304 None:intergenic 35.0%
CTACCAGACAAGATAAGAAA+AGG - chr3_1:88777388-88777407 None:intergenic 35.0%
TTCTTATCTTGTCTGGTAGA+AGG + chr3_1:88777389-88777408 Msa0385300:intron 35.0%
GTAGAAGGAGTAAAAGCTAT+CGG + chr3_1:88777404-88777423 Msa0385300:intron 35.0%
!!! TTTTGCAATGTTTTTTCCCC+CGG + chr3_1:88777914-88777933 Msa0385300:three_prime_UTR 35.0%
! TTGGTGACACAAAACTTGTA+AGG + chr3_1:88777946-88777965 Msa0385300:three_prime_UTR 35.0%
TGGTGACACAAAACTTGTAA+GGG + chr3_1:88777947-88777966 Msa0385300:three_prime_UTR 35.0%
! GACATAAGCGATTCTGAAGA+AGG + chr3_1:88774719-88774738 Msa0385300:five_prime_UTR 40.0%
GGTGAAGATGAACAAGGTTT+GGG - chr3_1:88774757-88774776 None:intergenic 40.0%
AGGTGAAGATGAACAAGGTT+TGG - chr3_1:88774758-88774777 None:intergenic 40.0%
ATGGAAGGTGAAGATGAACA+AGG - chr3_1:88774763-88774782 None:intergenic 40.0%
TAAGGTTCAATGTGGATGGA+AGG - chr3_1:88774778-88774797 None:intergenic 40.0%
ACAGGTTTCGAATCTTCAGA+AGG - chr3_1:88774823-88774842 None:intergenic 40.0%
AAAAAAGCCGCAAAACCCAA+CGG + chr3_1:88774880-88774899 Msa0385300:CDS 40.0%
TTAGAAAGGGGTTTACCGTT+GGG - chr3_1:88774898-88774917 None:intergenic 40.0%
AACGGTAAACCCCTTTCTAA+GGG + chr3_1:88774898-88774917 Msa0385300:CDS 40.0%
CTTCTCGTTCCAAAGTTAAG+AGG + chr3_1:88774980-88774999 Msa0385300:CDS 40.0%
CTTGAGTTCCCTCTTAACTT+TGG - chr3_1:88774992-88775011 None:intergenic 40.0%
CAAAGTTAAGAGGGAACTCA+AGG + chr3_1:88774990-88775009 Msa0385300:CDS 40.0%
GAAGGTAAAGAAAGAGGAAG+AGG + chr3_1:88775211-88775230 Msa0385300:CDS 40.0%
! GGTTGTTGTTACAGAAACGA+AGG + chr3_1:88775232-88775251 Msa0385300:CDS 40.0%
ATTGTTATGCAAACCTCTGC+AGG - chr3_1:88775308-88775327 None:intergenic 40.0%
!! ATTTGTGCCATTTCGCTAGT+TGG - chr3_1:88775451-88775470 None:intergenic 40.0%
CAAATCTGGTGAGTTCTCAA+CGG + chr3_1:88775466-88775485 Msa0385300:intron 40.0%
! TGGTGATAGTGTTCTTGCAA+GGG - chr3_1:88775844-88775863 None:intergenic 40.0%
! ATGGTGATAGTGTTCTTGCA+AGG - chr3_1:88775845-88775864 None:intergenic 40.0%
AATGACATGCCAACTGTGAA+TGG + chr3_1:88775977-88775996 Msa0385300:intron 40.0%
TTTGTTCCACGACACTTGTT+TGG + chr3_1:88776030-88776049 Msa0385300:intron 40.0%
TTCAAACCTCCAAATGCCTT+AGG + chr3_1:88776066-88776085 Msa0385300:intron 40.0%
TCAAACCTCCAAATGCCTTA+GGG + chr3_1:88776067-88776086 Msa0385300:intron 40.0%
! AAATGAGACCCTAAGGCATT+TGG - chr3_1:88776078-88776097 None:intergenic 40.0%
AGTGAGCTTAATTCCCTGTA+CGG + chr3_1:88776102-88776121 Msa0385300:intron 40.0%
AACCAATTCTACACCGTACA+GGG - chr3_1:88776118-88776137 None:intergenic 40.0%
AAACCAATTCTACACCGTAC+AGG - chr3_1:88776119-88776138 None:intergenic 40.0%
! GGTTTTGCTGATGTGTACAA+AGG + chr3_1:88776134-88776153 Msa0385300:intron 40.0%
TAATATATTTCCAGGGGCCT+GGG - chr3_1:88776320-88776339 None:intergenic 40.0%
TTAATATATTTCCAGGGGCC+TGG - chr3_1:88776321-88776340 None:intergenic 40.0%
! TCTGTCCTTAAATTGGCTTC+TGG - chr3_1:88776450-88776469 None:intergenic 40.0%
CTCTCAAATGATGGTTGTGA+TGG + chr3_1:88776502-88776521 Msa0385300:intron 40.0%
!!! CCTCGCATAGTTTTGTTTTC+AGG - chr3_1:88776529-88776548 None:intergenic 40.0%
CCTGAAAACAAAACTATGCG+AGG + chr3_1:88776526-88776545 Msa0385300:intron 40.0%
! TTATCTACGAGTTGGAATGC+TGG - chr3_1:88776619-88776638 None:intergenic 40.0%
AAATGCATAAGGCCTGATAG+TGG - chr3_1:88776688-88776707 None:intergenic 40.0%
CAAAGAGTGATGTCAGATCT+AGG - chr3_1:88776764-88776783 None:intergenic 40.0%
GTTAGGTAATTGCAACTGCA+AGG - chr3_1:88776920-88776939 None:intergenic 40.0%
TGCAGTTGCAATTACCTAAC+AGG + chr3_1:88776920-88776939 Msa0385300:intron 40.0%
GGAGAATACACAGAAAAAGG+TGG - chr3_1:88777131-88777150 None:intergenic 40.0%
TATGAGGGGATGGAATAACA+GGG - chr3_1:88777195-88777214 None:intergenic 40.0%
ATATGAGGGGATGGAATAAC+AGG - chr3_1:88777196-88777215 None:intergenic 40.0%
AGGAAAATTCAATCTGCAGC+AGG - chr3_1:88777359-88777378 None:intergenic 40.0%
AAGATAAGAAAAGGCGGGAA+AGG - chr3_1:88777379-88777398 None:intergenic 40.0%
CAGACAAGATAAGAAAAGGC+GGG - chr3_1:88777384-88777403 None:intergenic 40.0%
CCAGACAAGATAAGAAAAGG+CGG - chr3_1:88777385-88777404 None:intergenic 40.0%
ACTTTCTTTGCCACCTCTTT+AGG - chr3_1:88777598-88777617 None:intergenic 40.0%
ACAGCAGTTACAGACTTAAC+AGG - chr3_1:88777667-88777686 None:intergenic 40.0%
TGCTTTGATGTGGAGTTTGT+TGG - chr3_1:88777763-88777782 None:intergenic 40.0%
TCAGATTTGTGCTTCTTGGT+TGG - chr3_1:88777805-88777824 None:intergenic 40.0%
ATCTGAAAATTCGAGCTCTG+AGG + chr3_1:88777819-88777838 Msa0385300:CDS 40.0%
GGTGACACAAAACTTGTAAG+GGG + chr3_1:88777948-88777967 Msa0385300:three_prime_UTR 40.0%
ACGAATTAAAGGTCTACAGC+AGG - chr3_1:88778049-88778068 None:intergenic 40.0%
CCTCTCCAAAAAAATTAGGG+TGG - chr3_1:88778088-88778107 None:intergenic 40.0%
!!! CCACCCTAATTTTTTTGGAG+AGG + chr3_1:88778085-88778104 Msa0385300:three_prime_UTR 40.0%
CTTAGAAAGGGGTTTACCGT+TGG - chr3_1:88774899-88774918 None:intergenic 45.0%
CAACGGTAAACCCCTTTCTA+AGG + chr3_1:88774897-88774916 Msa0385300:CDS 45.0%
! TTTGGAACGAGAAGCTGAAG+TGG - chr3_1:88774974-88774993 None:intergenic 45.0%
TTTGTCATCGTCGTCTTCGT+CGG - chr3_1:88775031-88775050 None:intergenic 45.0%
! TGTGCTGTGTTAGGTTGTGA+AGG + chr3_1:88775169-88775188 Msa0385300:intron 45.0%
GTCTCGTAGAAAACCCTAGA+AGG - chr3_1:88775412-88775431 None:intergenic 45.0%
CTAGCGAAATGGCACAAATC+TGG + chr3_1:88775452-88775471 Msa0385300:CDS 45.0%
GTTTCTCAGTCTCTTCTGAG+TGG - chr3_1:88775907-88775926 None:intergenic 45.0%
! TACAGTCCAAACAAGTGTCG+TGG - chr3_1:88776039-88776058 None:intergenic 45.0%
TTCCCTGTACGGTGTAGAAT+TGG + chr3_1:88776113-88776132 Msa0385300:intron 45.0%
TAGAACCGCTAGGAACTACA+GGG - chr3_1:88776653-88776672 None:intergenic 45.0%
TTAGAACCGCTAGGAACTAC+AGG - chr3_1:88776654-88776673 None:intergenic 45.0%
! GCATGCAATTTAGAACCGCT+AGG - chr3_1:88776663-88776682 None:intergenic 45.0%
AATTGCATGCCACCACTATC+AGG + chr3_1:88776673-88776692 Msa0385300:intron 45.0%
GGGAAGAGAGACAAGAAAAG+AGG - chr3_1:88777174-88777193 None:intergenic 45.0%
ATGAGGGGATGGAATAACAG+GGG - chr3_1:88777194-88777213 None:intergenic 45.0%
AGTTGTCGTAACCCAGTTAC+TGG + chr3_1:88777270-88777289 Msa0385300:intron 45.0%
! CCGCCTTTTCTTATCTTGTC+TGG + chr3_1:88777382-88777401 Msa0385300:intron 45.0%
! TGATTGCAACTGCAGGTTGA+TGG + chr3_1:88777558-88777577 Msa0385300:intron 45.0%
!! AACTGCAGGTTGATGGAATC+AGG + chr3_1:88777565-88777584 Msa0385300:intron 45.0%
! ATCAGGCTTGCTTCCTAAAG+AGG + chr3_1:88777582-88777601 Msa0385300:CDS 45.0%
AAAGAAAGCTCTGCAGCAGA+AGG + chr3_1:88777633-88777652 Msa0385300:CDS 45.0%
GGAGTTTGTCTGCTTTGATG+TGG - chr3_1:88777773-88777792 None:intergenic 45.0%
TGTCACCAACAACAAATGCC+GGG - chr3_1:88777935-88777954 None:intergenic 45.0%
GTGTCACCAACAACAAATGC+CGG - chr3_1:88777936-88777955 None:intergenic 45.0%
! AAACTTGTAAGGGGCACATG+AGG + chr3_1:88777957-88777976 Msa0385300:three_prime_UTR 45.0%
!! TAAAAAAAAAAAAAAAAACT+AGG - chr3_1:88775106-88775125 None:intergenic 5.0%
!!! CTCTCTTGTTTTCGGGACTC+CGG - chr3_1:88774691-88774710 None:intergenic 50.0%
! GGGTTTACCGTTGGGTTTTG+CGG - chr3_1:88774890-88774909 None:intergenic 50.0%
GTTATGCAAACCTCTGCAGG+TGG - chr3_1:88775305-88775324 None:intergenic 50.0%
! TGAGACCCTAAGGCATTTGG+AGG - chr3_1:88776075-88776094 None:intergenic 50.0%
TATAACACCAAGCCTAGCCC+AGG + chr3_1:88776300-88776319 Msa0385300:intron 50.0%
!! TGCATAAGGCCTGATAGTGG+TGG - chr3_1:88776685-88776704 None:intergenic 50.0%
TCTCCATGACCTTTACCCCA+AGG + chr3_1:88777146-88777165 Msa0385300:intron 50.0%
!! ACAAGAAAAGAGGCGCCTTG+GGG - chr3_1:88777164-88777183 None:intergenic 50.0%
!! GACAAGAAAAGAGGCGCCTT+GGG - chr3_1:88777165-88777184 None:intergenic 50.0%
!! AGACAAGAAAAGAGGCGCCT+TGG - chr3_1:88777166-88777185 None:intergenic 50.0%
! GCGTTACTGATTGCAACTGC+AGG + chr3_1:88777551-88777570 Msa0385300:intron 50.0%
! AGGCTTGCTTCCTAAAGAGG+TGG + chr3_1:88777585-88777604 Msa0385300:CDS 50.0%
! CGGAAGAATTTGGGGTAGCT+GGG - chr3_1:88777729-88777748 None:intergenic 50.0%
! ACGGAAGAATTTGGGGTAGC+TGG - chr3_1:88777730-88777749 None:intergenic 50.0%
!! CTTCTTGGTTGGCTTCGATG+TGG - chr3_1:88777794-88777813 None:intergenic 50.0%
!! TTTCCCCCGGCATTTGTTGT+TGG + chr3_1:88777927-88777946 Msa0385300:three_prime_UTR 50.0%
TCACCAACAACAAATGCCGG+GGG - chr3_1:88777933-88777952 None:intergenic 50.0%
GTCACCAACAACAAATGCCG+GGG - chr3_1:88777934-88777953 None:intergenic 50.0%
GCTGAAGTGGCACGAGGAAT+GGG - chr3_1:88774961-88774980 None:intergenic 55.0%
AGCTGAAGTGGCACGAGGAA+TGG - chr3_1:88774962-88774981 None:intergenic 55.0%
GGTGGATCACGTTTCTGTCC+AGG - chr3_1:88775287-88775306 None:intergenic 55.0%
GAAACGTGATCCACCTGCAG+AGG + chr3_1:88775292-88775311 Msa0385300:CDS 55.0%
!! AAAGAGGCGCCTTGGGGTAA+AGG - chr3_1:88777158-88777177 None:intergenic 55.0%
! GTGGCACGAGGAATGGGTTC+AGG - chr3_1:88774955-88774974 None:intergenic 60.0%
CGAGAAGCTGAAGTGGCACG+AGG - chr3_1:88774967-88774986 None:intergenic 60.0%
TATTTCCAGGGGCCTGGGCT+AGG - chr3_1:88776315-88776334 None:intergenic 60.0%
ACCGGCCCTGTAGTTCCTAG+CGG + chr3_1:88776645-88776664 Msa0385300:intron 60.0%
ACCGCTAGGAACTACAGGGC+CGG - chr3_1:88776649-88776668 None:intergenic 60.0%
GCGCCTTGGGGTAAAGGTCA+TGG - chr3_1:88777152-88777171 None:intergenic 60.0%
! CCAGGGGCCTGGGCTAGGCT+TGG - chr3_1:88776310-88776329 None:intergenic 75.0%
CCAAGCCTAGCCCAGGCCCC+TGG + chr3_1:88776307-88776326 Msa0385300:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88774688 88778226 88774688 ID=Msa0385300;Name=Msa0385300
chr3_1 mRNA 88774688 88778226 88774688 ID=Msa0385300-mRNA-1;Parent=Msa0385300;Name=Msa0385300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=129|1|1|1|1|1|4|326|264
chr3_1 exon 88774688 88775080 88774688 ID=Msa0385300-mRNA-1:exon:23956;Parent=Msa0385300-mRNA-1
chr3_1 exon 88775182 88775313 88775182 ID=Msa0385300-mRNA-1:exon:23957;Parent=Msa0385300-mRNA-1
chr3_1 exon 88775403 88775473 88775403 ID=Msa0385300-mRNA-1:exon:23958;Parent=Msa0385300-mRNA-1
chr3_1 exon 88777573 88778226 88777573 ID=Msa0385300-mRNA-1:exon:23959;Parent=Msa0385300-mRNA-1
chr3_1 five_prime_UTR 88774688 88774816 88774688 ID=Msa0385300-mRNA-1:five_prime_utr;Parent=Msa0385300-mRNA-1
chr3_1 CDS 88774817 88775080 88774817 ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1
chr3_1 CDS 88775182 88775313 88775182 ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1
chr3_1 CDS 88775403 88775473 88775403 ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1
chr3_1 CDS 88777573 88777900 88777573 ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1
chr3_1 three_prime_UTR 88777901 88778226 88777901 ID=Msa0385300-mRNA-1:three_prime_utr;Parent=Msa0385300-mRNA-1
Gene Sequence

>Msa0385300

ATGCCTTCTGAAGATTCGAAACCTGTGAAAAAACAAGACGACAACGACAAGATTTCTACTTTGAAAAAAGCCGCAAAACCCAACGGTAAACCCCTTTCTAAGGGTTCAAAACTCAAGAAATTATTCAAAGAAGAACCTGAACCCATTCCTCGTGCCACTTCAGCTTCTCGTTCCAAAGTTAAGAGGGAACTCAAGGACGATGATGATGACTCCGACGAAGACGACGATGACAAACCTATCTCCAAAAAGATATCCAAAACCAAGGTTGTGAAGGAAGAAGTGAAGAAAAAGAAGAAGGTAAAGAAAGAGGAAGAGGTTGTTGTTACAGAAACGAAGGTTAAGAAAGTAAAGAAGGTTTATGATTTACCTGGACAGAAACGTGATCCACCTGCAGAGAGAGATCCTTCTAGGGTTTTCTACGAGACTTTACATGAACAAATTCCAACTAGCGAAATGGCACAAATCTGGTTGATGGAATCAGGCTTGCTTCCTAAAGAGGTGGCAAAGAAAGTATTTGAGAAGAAGCAAAAGAAAGCTCTGCAGCAGAAGGTCTCTTCTCCTGTTAAGTCTGTAACTGCTGTGAAGAAAAGCACCAAATCTGTTACAATTAAGAAAGAATGCCCAGCTACCCCAAATTCTTCCGTTAAAAAGAAGCCAACAAACTCCACATCAAAGCAGACAAACTCCACATCGAAGCCAACCAAGAAGCACAAATCTGAAAATTCGAGCTCTGAGGATGATGATTCTGATTTTGACATTGGTTCAGCAACAAAAAAGAAGAGAAAAGTGGCTTAA

Protein sequence

>Msa0385300

MPSEDSKPVKKQDDNDKISTLKKAAKPNGKPLSKGSKLKKLFKEEPEPIPRATSASRSKVKRELKDDDDDSDEDDDDKPISKKISKTKVVKEEVKKKKKVKKEEEVVVTETKVKKVKKVYDLPGQKRDPPAERDPSRVFYETLHEQIPTSEMAQIWLMESGLLPKEVAKKVFEKKQKKALQQKVSSPVKSVTAVKKSTKSVTIKKECPATPNSSVKKKPTNSTSKQTNSTSKPTKKHKSENSSSEDDDSDFDIGSATKKKRKVA*