Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385300 | XP_003603764.2 | 91.667 | 264 | 21 | 1 | 1 | 264 | 1 | 263 | 3.45e-92 | 283 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385300 | B7FL43 | 91.667 | 264 | 21 | 1 | 1 | 264 | 1 | 263 | 1.65e-92 | 283 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003780 | Msa0385300 | 0.823354 | 1.448767e-53 | -8.615850e-47 |
Msa0029270 | Msa0385300 | 0.817323 | 3.499645e-52 | -8.615850e-47 |
Msa0032090 | Msa0385300 | 0.843196 | 1.625315e-58 | -8.615850e-47 |
Msa0032430 | Msa0385300 | 0.840515 | 8.302449e-58 | -8.615850e-47 |
Msa0040690 | Msa0385300 | 0.812524 | 4.059930e-51 | -8.615850e-47 |
Msa0074030 | Msa0385300 | 0.822344 | 2.490432e-53 | -8.615850e-47 |
Msa0079380 | Msa0385300 | 0.821082 | 4.878442e-53 | -8.615850e-47 |
Msa0127050 | Msa0385300 | 0.806388 | 8.427673e-50 | -8.615850e-47 |
Msa0146340 | Msa0385300 | 0.803894 | 2.803647e-49 | -8.615850e-47 |
Msa0172070 | Msa0385300 | 0.843666 | 1.218117e-58 | -8.615850e-47 |
Msa0385300 | Msa0479430 | 0.875322 | 3.376708e-68 | -8.615850e-47 |
Msa0385300 | Msa0523120 | 0.969489 | 3.382711e-130 | -8.615850e-47 |
Msa0385300 | Msa0532070 | 0.813906 | 2.019394e-51 | -8.615850e-47 |
Msa0385300 | Msa0569200 | 0.803292 | 3.736539e-49 | -8.615850e-47 |
Msa0385300 | Msa0698660 | 0.803510 | 3.368646e-49 | -8.615850e-47 |
Msa0385300 | Msa0876800 | 0.818547 | 1.851658e-52 | -8.615850e-47 |
Msa0385300 | Msa0979060 | 0.806196 | 9.249560e-50 | -8.615850e-47 |
Msa0385300 | Msa1043690 | 0.838365 | 3.002625e-57 | -8.615850e-47 |
Msa0385300 | Msa1081150 | 0.805942 | 1.046425e-49 | -8.615850e-47 |
Msa0385300 | Msa1104140 | 0.829469 | 5.057981e-55 | -8.615850e-47 |
Msa0385300 | Msa1170670 | 0.808277 | 3.351777e-50 | -8.615850e-47 |
Msa0385300 | Msa1201650 | 0.804851 | 1.771632e-49 | -8.615850e-47 |
Msa0385300 | Msa1330410 | 0.802738 | 4.865406e-49 | -8.615850e-47 |
Msa0385300 | Msa1374120 | 0.839645 | 1.399977e-57 | -8.615850e-47 |
Msa0385300 | Msa1382620 | 0.822366 | 2.462085e-53 | -8.615850e-47 |
Msa0385300 | Msa1383830 | 0.805650 | 1.204719e-49 | -8.615850e-47 |
Msa0385300 | Msa1394290 | 0.806321 | 8.708565e-50 | -8.615850e-47 |
Msa0385300 | Msa1405930 | 0.802706 | 4.940760e-49 | -8.615850e-47 |
Msa0255090 | Msa0385300 | 0.801459 | 8.913852e-49 | -8.615850e-47 |
Msa0259380 | Msa0385300 | 0.801518 | 8.669391e-49 | -8.615850e-47 |
Msa0292400 | Msa0385300 | 0.800402 | 1.465809e-48 | -8.615850e-47 |
Msa0327300 | Msa0385300 | 0.803660 | 3.135940e-49 | -8.615850e-47 |
Msa0327330 | Msa0385300 | 0.817227 | 3.678629e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385300 | MtrunA17_Chr3g0142711 | 91.667 | 264 | 21 | 1 | 1 | 264 | 1 | 263 | 3.18e-96 | 283 |
Msa0385300 | MtrunA17_Chr3g0140151 | 51.961 | 102 | 47 | 1 | 117 | 218 | 97 | 196 | 1.62e-27 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0385300 | AT1G19990.1 | 43.750 | 272 | 116 | 10 | 2 | 261 | 3 | 249 | 8.22e-37 | 131 |
Msa0385300 | AT5G11600.2 | 55.814 | 86 | 38 | 0 | 106 | 191 | 108 | 193 | 1.69e-26 | 103 |
Msa0385300 | AT5G11600.1 | 55.814 | 86 | 38 | 0 | 106 | 191 | 108 | 193 | 1.69e-26 | 103 |
Find 65 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCATAATTGACGAATTAA+AGG | 0.232622 | 3_1:-88778057 | None:intergenic |
ACTTTCTTTGCCACCTCTTT+AGG | 0.245967 | 3_1:-88777595 | None:intergenic |
CAACGGTAAACCCCTTTCTA+AGG | 0.258341 | 3_1:+88774897 | Msa0385300:CDS |
TTTCTTAATTGTAACAGATT+TGG | 0.302366 | 3_1:-88777698 | None:intergenic |
ACAGCAGTTACAGACTTAAC+AGG | 0.336791 | 3_1:-88777664 | None:intergenic |
TTTGTGAACAATCGATTCTA+AGG | 0.355684 | 3_1:-88774793 | None:intergenic |
TGCTTTGATGTGGAGTTTGT+TGG | 0.359320 | 3_1:-88777760 | None:intergenic |
ACGGAAGAATTTGGGGTAGC+TGG | 0.368565 | 3_1:-88777727 | None:intergenic |
AACTGCAGGTTGATGGAATC+AGG | 0.375812 | 3_1:+88777565 | Msa0385300:intron |
ATAATAACATAAATTGCATT+TGG | 0.387140 | 3_1:+88778144 | Msa0385300:three_prime_UTR |
TTGGTGACACAAAACTTGTA+AGG | 0.394895 | 3_1:+88777946 | Msa0385300:three_prime_UTR |
ATTTGTGCCATTTCGCTAGT+TGG | 0.401961 | 3_1:-88775448 | None:intergenic |
CTAGCGAAATGGCACAAATC+TGG | 0.411971 | 3_1:+88775452 | Msa0385300:CDS |
GTGGCACGAGGAATGGGTTC+AGG | 0.420548 | 3_1:-88774952 | None:intergenic |
CTGGGGCAAAAGCATAAATC+TGG | 0.420706 | 3_1:-88778206 | None:intergenic |
CTTCTCGTTCCAAAGTTAAG+AGG | 0.423874 | 3_1:+88774980 | Msa0385300:CDS |
TGATTGCAACTGCAGGTTGA+TGG | 0.428702 | 3_1:+88777558 | Msa0385300:intron |
TCAGATTTGTGCTTCTTGGT+TGG | 0.428762 | 3_1:-88777802 | None:intergenic |
AAAGAAGAAGGTAAAGAAAG+AGG | 0.432786 | 3_1:+88775205 | Msa0385300:CDS |
CTTGAGTTCCCTCTTAACTT+TGG | 0.435585 | 3_1:-88774989 | None:intergenic |
AGCTGAAGTGGCACGAGGAA+TGG | 0.440315 | 3_1:-88774959 | None:intergenic |
GTCTCGTAGAAAACCCTAGA+AGG | 0.445303 | 3_1:-88775409 | None:intergenic |
ATAAATTGCATTTGGCAGAA+AGG | 0.449679 | 3_1:+88778152 | Msa0385300:three_prime_UTR |
GGTGAAGATGAACAAGGTTT+GGG | 0.454900 | 3_1:-88774754 | None:intergenic |
GAAGGTTAAGAAAGTAAAGA+AGG | 0.462009 | 3_1:+88775250 | Msa0385300:CDS |
AGGTGAAGATGAACAAGGTT+TGG | 0.463475 | 3_1:-88774755 | None:intergenic |
GAAGGTAAAGAAAGAGGAAG+AGG | 0.464209 | 3_1:+88775211 | Msa0385300:CDS |
GCTGAAGTGGCACGAGGAAT+GGG | 0.464474 | 3_1:-88774958 | None:intergenic |
CGGAAGAATTTGGGGTAGCT+GGG | 0.468663 | 3_1:-88777726 | None:intergenic |
ACAAATTCCAACTAGCGAAA+TGG | 0.472854 | 3_1:+88775441 | Msa0385300:CDS |
GACATAAGCGATTCTGAAGA+AGG | 0.482635 | 3_1:+88774719 | Msa0385300:five_prime_UTR |
TTAGAAAGGGGTTTACCGTT+GGG | 0.482681 | 3_1:-88774895 | None:intergenic |
GTGTCACCAACAACAAATGC+CGG | 0.491011 | 3_1:-88777933 | None:intergenic |
TTTGTCATCGTCGTCTTCGT+CGG | 0.494023 | 3_1:-88775028 | None:intergenic |
CTTAGAAAGGGGTTTACCGT+TGG | 0.503604 | 3_1:-88774896 | None:intergenic |
GGTGGATCACGTTTCTGTCC+AGG | 0.503762 | 3_1:-88775284 | None:intergenic |
ATCAGGCTTGCTTCCTAAAG+AGG | 0.510477 | 3_1:+88777582 | Msa0385300:CDS |
ATTGTTATGCAAACCTCTGC+AGG | 0.514578 | 3_1:-88775305 | None:intergenic |
TGTCACCAACAACAAATGCC+GGG | 0.520299 | 3_1:-88777932 | None:intergenic |
TGTGCTGTGTTAGGTTGTGA+AGG | 0.525327 | 3_1:+88775169 | Msa0385300:intron |
ATTCTAAGGTTCAATGTGGA+TGG | 0.542258 | 3_1:-88774779 | None:intergenic |
AAGAAGGTTTATGATTTACC+TGG | 0.546770 | 3_1:+88775266 | Msa0385300:CDS |
AAAGAAAGCTCTGCAGCAGA+AGG | 0.552066 | 3_1:+88777633 | Msa0385300:CDS |
AACGGTAAACCCCTTTCTAA+GGG | 0.555197 | 3_1:+88774898 | Msa0385300:CDS |
GGAGTTTGTCTGCTTTGATG+TGG | 0.556824 | 3_1:-88777770 | None:intergenic |
TGGTGACACAAAACTTGTAA+GGG | 0.558331 | 3_1:+88777947 | Msa0385300:three_prime_UTR |
CTTCTTGGTTGGCTTCGATG+TGG | 0.562372 | 3_1:-88777791 | None:intergenic |
ACGAATTAAAGGTCTACAGC+AGG | 0.562539 | 3_1:-88778046 | None:intergenic |
TTCTCGTTCCAAAGTTAAGA+GGG | 0.573394 | 3_1:+88774981 | Msa0385300:CDS |
TAAGGTTCAATGTGGATGGA+AGG | 0.579955 | 3_1:-88774775 | None:intergenic |
ACAGGTTTCGAATCTTCAGA+AGG | 0.581427 | 3_1:-88774820 | None:intergenic |
CAAAGTTAAGAGGGAACTCA+AGG | 0.601249 | 3_1:+88774990 | Msa0385300:CDS |
TTTGGAACGAGAAGCTGAAG+TGG | 0.604596 | 3_1:-88774971 | None:intergenic |
GTCACCAACAACAAATGCCG+GGG | 0.615591 | 3_1:-88777931 | None:intergenic |
GGTTGTTGTTACAGAAACGA+AGG | 0.621147 | 3_1:+88775232 | Msa0385300:CDS |
AAACTTGTAAGGGGCACATG+AGG | 0.627146 | 3_1:+88777957 | Msa0385300:three_prime_UTR |
GAAACGTGATCCACCTGCAG+AGG | 0.633728 | 3_1:+88775292 | Msa0385300:CDS |
CGAGAAGCTGAAGTGGCACG+AGG | 0.634997 | 3_1:-88774964 | None:intergenic |
ATCTGAAAATTCGAGCTCTG+AGG | 0.636255 | 3_1:+88777819 | Msa0385300:CDS |
AGGCTTGCTTCCTAAAGAGG+TGG | 0.651439 | 3_1:+88777585 | Msa0385300:CDS |
GTTATGCAAACCTCTGCAGG+TGG | 0.653027 | 3_1:-88775302 | None:intergenic |
GGTGACACAAAACTTGTAAG+GGG | 0.653765 | 3_1:+88777948 | Msa0385300:three_prime_UTR |
ATCGATTCTAAGGTTCAATG+TGG | 0.658585 | 3_1:-88774783 | None:intergenic |
ATGGAAGGTGAAGATGAACA+AGG | 0.690504 | 3_1:-88774760 | None:intergenic |
TCACCAACAACAAATGCCGG+GGG | 0.698115 | 3_1:-88777930 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATTATATACAGTTTA+AGG | + | chr3_1:88776393-88776412 | Msa0385300:intron | 10.0% |
!!! | TTTTTTTTTACTTTTCTTTT+GGG | + | chr3_1:88776581-88776600 | Msa0385300:intron | 10.0% |
!!! | CTTTTTTTTTACTTTTCTTT+TGG | + | chr3_1:88776580-88776599 | Msa0385300:intron | 15.0% |
!!! | TTTTTTTTACTTTTCTTTTG+GGG | + | chr3_1:88776582-88776601 | Msa0385300:intron | 15.0% |
!!! | ATTACATTCTTTTAGATATT+TGG | - | chr3_1:88777431-88777450 | None:intergenic | 15.0% |
!! | ATCCTAATATTTAAAAATGT+TGG | + | chr3_1:88778109-88778128 | Msa0385300:three_prime_UTR | 15.0% |
!!! | TACCAACATTTTTAAATATT+AGG | - | chr3_1:88778114-88778133 | None:intergenic | 15.0% |
!! | ATAATAACATAAATTGCATT+TGG | + | chr3_1:88778144-88778163 | Msa0385300:three_prime_UTR | 15.0% |
!!! | TTTTTTTTCTCTCTTGTTTT+CGG | - | chr3_1:88774699-88774718 | None:intergenic | 20.0% |
!!! | CTATTTTAGAAATGTATGTT+CGG | + | chr3_1:88775131-88775150 | Msa0385300:intron | 20.0% |
!! | AATTGCAATTCATCATATTT+AGG | + | chr3_1:88775523-88775542 | Msa0385300:intron | 20.0% |
!! | ATTGCAATTCATCATATTTA+GGG | + | chr3_1:88775524-88775543 | Msa0385300:intron | 20.0% |
!! | ATTAAGATGTTTATCCAAAT+AGG | + | chr3_1:88775768-88775787 | Msa0385300:intron | 20.0% |
!! | AAAATTGTTAAAGTCCTATT+TGG | - | chr3_1:88775785-88775804 | None:intergenic | 20.0% |
!!! | AATAGGACTTTAACAATTTT+AGG | + | chr3_1:88775785-88775804 | Msa0385300:intron | 20.0% |
!!! | ACCAATTTAAAATGATATGA+GGG | - | chr3_1:88777210-88777229 | None:intergenic | 20.0% |
!!! | AACCAATTTAAAATGATATG+AGG | - | chr3_1:88777211-88777230 | None:intergenic | 20.0% |
!! | TTTCTTAATTGTAACAGATT+TGG | - | chr3_1:88777701-88777720 | None:intergenic | 20.0% |
!!! | TTTTTTTCTCTCTTGTTTTC+GGG | - | chr3_1:88774698-88774717 | None:intergenic | 25.0% |
! | AACATAAAAACGAACTGAAA+AGG | - | chr3_1:88775354-88775373 | None:intergenic | 25.0% |
! | AGCTACATTCATAAATTACA+TGG | - | chr3_1:88775639-88775658 | None:intergenic | 25.0% |
! | AATGTAGCTTATAGCTTATA+CGG | + | chr3_1:88775650-88775669 | Msa0385300:intron | 25.0% |
!!! | ACTTTAACAATTTTAGGAGT+TGG | + | chr3_1:88775791-88775810 | Msa0385300:intron | 25.0% |
! | TAAGTTTAATTGCTAGACTT+TGG | + | chr3_1:88775816-88775835 | Msa0385300:intron | 25.0% |
! | GCAATTTAATATATTTCCAG+GGG | - | chr3_1:88776326-88776345 | None:intergenic | 25.0% |
! | CGCAATTTAATATATTTCCA+GGG | - | chr3_1:88776327-88776346 | None:intergenic | 25.0% |
! | ATATAATATATAACCCTGTG+AGG | - | chr3_1:88776385-88776404 | None:intergenic | 25.0% |
!! | ATGTGTAATGACTTGTATTT+AGG | + | chr3_1:88776419-88776438 | Msa0385300:intron | 25.0% |
! | CAAATCAAATATAGACAGTA+AGG | - | chr3_1:88776722-88776741 | None:intergenic | 25.0% |
!! | GTTAAGTTGTTTATATCCTT+TGG | + | chr3_1:88776797-88776816 | Msa0385300:intron | 25.0% |
! | GTTTATATCCTTTGGATTAA+CGG | + | chr3_1:88776805-88776824 | Msa0385300:intron | 25.0% |
!!! | TTTTGTTGTTTTCTTGTCTT+AGG | + | chr3_1:88776831-88776850 | Msa0385300:intron | 25.0% |
!!! | GTTTGATTTGTTAACTATGA+AGG | + | chr3_1:88776944-88776963 | Msa0385300:intron | 25.0% |
! | TTGAAACATAAGACAAGTAT+AGG | + | chr3_1:88777014-88777033 | Msa0385300:intron | 25.0% |
!!! | TGAGCTTTGTTATTTGATTT+TGG | + | chr3_1:88777047-88777066 | Msa0385300:intron | 25.0% |
!!! | GAGCTTTGTTATTTGATTTT+GGG | + | chr3_1:88777048-88777067 | Msa0385300:intron | 25.0% |
!!! | AGCTTTGTTATTTGATTTTG+GGG | + | chr3_1:88777049-88777068 | Msa0385300:intron | 25.0% |
!! | CCAATTTAAAATGATATGAG+GGG | - | chr3_1:88777209-88777228 | None:intergenic | 25.0% |
!!! | AGGTTGTCTTGTTTAAATAA+GGG | - | chr3_1:88777339-88777358 | None:intergenic | 25.0% |
!! | TCTTTTTAACGGAAGAATTT+GGG | - | chr3_1:88777738-88777757 | None:intergenic | 25.0% |
!! | TTCTTTTTAACGGAAGAATT+TGG | - | chr3_1:88777739-88777758 | None:intergenic | 25.0% |
! | AACAAAAAAGAAGAGAAAAG+TGG | + | chr3_1:88777873-88777892 | Msa0385300:CDS | 25.0% |
! | TTGCATAATTGACGAATTAA+AGG | - | chr3_1:88778060-88778079 | None:intergenic | 25.0% |
! | ATTCCTCTCCAAAAAAATTA+GGG | - | chr3_1:88778091-88778110 | None:intergenic | 25.0% |
! | TTTGTGAACAATCGATTCTA+AGG | - | chr3_1:88774796-88774815 | None:intergenic | 30.0% |
!! | TTGGATATCTTTTTGGAGAT+AGG | - | chr3_1:88775054-88775073 | None:intergenic | 30.0% |
!!! | CTTGGTTTTGGATATCTTTT+TGG | - | chr3_1:88775061-88775080 | None:intergenic | 30.0% |
CAAAAAGATATCCAAAACCA+AGG | + | chr3_1:88775059-88775078 | Msa0385300:CDS | 30.0% | |
! | AGAATTTCGATTTTGTACCT+TGG | - | chr3_1:88775079-88775098 | None:intergenic | 30.0% |
AGAAGTGAAGAAAAAGAAGA+AGG | + | chr3_1:88775193-88775212 | Msa0385300:CDS | 30.0% | |
AAAGAAGAAGGTAAAGAAAG+AGG | + | chr3_1:88775205-88775224 | Msa0385300:CDS | 30.0% | |
GAAGGTTAAGAAAGTAAAGA+AGG | + | chr3_1:88775250-88775269 | Msa0385300:CDS | 30.0% | |
AAGAAGGTTTATGATTTACC+TGG | + | chr3_1:88775266-88775285 | Msa0385300:CDS | 30.0% | |
!!! | TTTTTTAGAGAGATCCTTCT+AGG | + | chr3_1:88775395-88775414 | Msa0385300:intron | 30.0% |
!! | TTTTTAGAGAGATCCTTCTA+GGG | + | chr3_1:88775396-88775415 | Msa0385300:intron | 30.0% |
AACAGAAACATAAGCAGAAT+AGG | - | chr3_1:88775492-88775511 | None:intergenic | 30.0% | |
! | CAATTCATCATATTTAGGGT+CGG | + | chr3_1:88775528-88775547 | Msa0385300:intron | 30.0% |
TAAATTACATGGAGAGCTTA+TGG | - | chr3_1:88775628-88775647 | None:intergenic | 30.0% | |
CACTTCATAATTCACATTCA+TGG | - | chr3_1:88775864-88775883 | None:intergenic | 30.0% | |
TACTTGTGAATTCGATTAAG+AGG | + | chr3_1:88775940-88775959 | Msa0385300:intron | 30.0% | |
AAAGTGCATTTGAATGGAAA+GGG | - | chr3_1:88776172-88776191 | None:intergenic | 30.0% | |
TTGTACAAAGTGCATTTGAA+TGG | - | chr3_1:88776178-88776197 | None:intergenic | 30.0% | |
!! | AAAAGTACTCTTTGAGTCTA+AGG | - | chr3_1:88776276-88776295 | None:intergenic | 30.0% |
GCGCAATTTAATATATTTCC+AGG | - | chr3_1:88776328-88776347 | None:intergenic | 30.0% | |
! | ATGCTATTATTTTCCTCACA+GGG | + | chr3_1:88776369-88776388 | Msa0385300:intron | 30.0% |
TAAAACCAGAAGCCAATTTA+AGG | + | chr3_1:88776442-88776461 | Msa0385300:intron | 30.0% | |
AATCACTTCTGTCCTTAAAT+TGG | - | chr3_1:88776457-88776476 | None:intergenic | 30.0% | |
AGAATTTACACAAACACAAG+GGG | - | chr3_1:88776484-88776503 | None:intergenic | 30.0% | |
GAGAATTTACACAAACACAA+GGG | - | chr3_1:88776485-88776504 | None:intergenic | 30.0% | |
AGAGAATTTACACAAACACA+AGG | - | chr3_1:88776486-88776505 | None:intergenic | 30.0% | |
GTGTAAATTCTCTCAAATGA+TGG | + | chr3_1:88776493-88776512 | Msa0385300:intron | 30.0% | |
CAAAATAACCGTTAATCCAA+AGG | - | chr3_1:88776816-88776835 | None:intergenic | 30.0% | |
!! | TCTTAGGTCAGAGTTATTTT+AGG | + | chr3_1:88776847-88776866 | Msa0385300:intron | 30.0% |
TAACAAATCAAACACCTGTT+AGG | - | chr3_1:88776937-88776956 | None:intergenic | 30.0% | |
! | AGGTGGAGATTTTTATGTTT+TGG | - | chr3_1:88777114-88777133 | None:intergenic | 30.0% |
! | TTTAAAATGATATGAGGGGA+TGG | - | chr3_1:88777205-88777224 | None:intergenic | 30.0% |
! | CCCCTCATATCATTTTAAAT+TGG | + | chr3_1:88777206-88777225 | Msa0385300:intron | 30.0% |
ATGCTCGTATTATAGTCTAA+TGG | + | chr3_1:88777307-88777326 | Msa0385300:intron | 30.0% | |
!! | CAGGTTGTCTTGTTTAAATA+AGG | - | chr3_1:88777340-88777359 | None:intergenic | 30.0% |
GAAATGTGTATCATCAAAAC+TGG | + | chr3_1:88777451-88777470 | Msa0385300:intron | 30.0% | |
!!! | ATAGAGCGTAGAAGATTTTT+TGG | + | chr3_1:88777526-88777545 | Msa0385300:intron | 30.0% |
! | CTTTTTAACGGAAGAATTTG+GGG | - | chr3_1:88777737-88777756 | None:intergenic | 30.0% |
!!! | GTTTGTTGGCTTCTTTTTAA+CGG | - | chr3_1:88777749-88777768 | None:intergenic | 30.0% |
! | ATTTTCAGATTTGTGCTTCT+TGG | - | chr3_1:88777809-88777828 | None:intergenic | 30.0% |
!! | GATGATTCTGATTTTGACAT+TGG | + | chr3_1:88777844-88777863 | Msa0385300:CDS | 30.0% |
!!! | ACAATCCACCCTAATTTTTT+TGG | + | chr3_1:88778080-88778099 | Msa0385300:three_prime_UTR | 30.0% |
GATTCCTCTCCAAAAAAATT+AGG | - | chr3_1:88778092-88778111 | None:intergenic | 30.0% | |
ATAAATTGCATTTGGCAGAA+AGG | + | chr3_1:88778152-88778171 | Msa0385300:three_prime_UTR | 30.0% | |
!! | ATTCTAAGGTTCAATGTGGA+TGG | - | chr3_1:88774782-88774801 | None:intergenic | 35.0% |
!! | ATCGATTCTAAGGTTCAATG+TGG | - | chr3_1:88774786-88774805 | None:intergenic | 35.0% |
!!! | TTGTCGTCTTGTTTTTTCAC+AGG | - | chr3_1:88774841-88774860 | None:intergenic | 35.0% |
!!! | AGTTTTGAACCCTTAGAAAG+GGG | - | chr3_1:88774910-88774929 | None:intergenic | 35.0% |
!!! | GAGTTTTGAACCCTTAGAAA+GGG | - | chr3_1:88774911-88774930 | None:intergenic | 35.0% |
!!! | TGAGTTTTGAACCCTTAGAA+AGG | - | chr3_1:88774912-88774931 | None:intergenic | 35.0% |
TTCTCGTTCCAAAGTTAAGA+GGG | + | chr3_1:88774981-88775000 | Msa0385300:CDS | 35.0% | |
! | TCGATTTTGTACCTTGGTTT+TGG | - | chr3_1:88775073-88775092 | None:intergenic | 35.0% |
!! | TTAGAGTATTGTGCTGTGTT+AGG | + | chr3_1:88775160-88775179 | Msa0385300:intron | 35.0% |
ACAAATTCCAACTAGCGAAA+TGG | + | chr3_1:88775441-88775460 | Msa0385300:CDS | 35.0% | |
!!! | TTGTGACTTTTGAGACTGTT+TGG | + | chr3_1:88775582-88775601 | Msa0385300:intron | 35.0% |
AATTGTCTTCCATTCACAGT+TGG | - | chr3_1:88775989-88776008 | None:intergenic | 35.0% | |
ACTGATAAAATGAGACCCTA+AGG | - | chr3_1:88776085-88776104 | None:intergenic | 35.0% | |
CAAAGTGCATTTGAATGGAA+AGG | - | chr3_1:88776173-88776192 | None:intergenic | 35.0% | |
GGCTCACATTCAAACATAAA+GGG | - | chr3_1:88776255-88776274 | None:intergenic | 35.0% | |
AGGCTCACATTCAAACATAA+AGG | - | chr3_1:88776256-88776275 | None:intergenic | 35.0% | |
! | CATGCTATTATTTTCCTCAC+AGG | + | chr3_1:88776368-88776387 | Msa0385300:intron | 35.0% |
GAGGTTTAATCATGCTGTTA+CGG | + | chr3_1:88776545-88776564 | Msa0385300:intron | 35.0% | |
GTGTATGATTATCTACGAGT+TGG | - | chr3_1:88776627-88776646 | None:intergenic | 35.0% | |
ACTCGTAGATAATCATACAC+CGG | + | chr3_1:88776627-88776646 | Msa0385300:intron | 35.0% | |
AACAAGCGAACAAATGCATA+AGG | - | chr3_1:88776699-88776718 | None:intergenic | 35.0% | |
AAAGAGTGATGTCAGATCTA+GGG | - | chr3_1:88776763-88776782 | None:intergenic | 35.0% | |
CATGGAGAATACACAGAAAA+AGG | - | chr3_1:88777134-88777153 | None:intergenic | 35.0% | |
TAAATTGGTTGTGCTGTACA+TGG | + | chr3_1:88777221-88777240 | Msa0385300:intron | 35.0% | |
ACAATACAATGCCAGTAACT+GGG | - | chr3_1:88777284-88777303 | None:intergenic | 35.0% | |
AACAATACAATGCCAGTAAC+TGG | - | chr3_1:88777285-88777304 | None:intergenic | 35.0% | |
CTACCAGACAAGATAAGAAA+AGG | - | chr3_1:88777388-88777407 | None:intergenic | 35.0% | |
TTCTTATCTTGTCTGGTAGA+AGG | + | chr3_1:88777389-88777408 | Msa0385300:intron | 35.0% | |
GTAGAAGGAGTAAAAGCTAT+CGG | + | chr3_1:88777404-88777423 | Msa0385300:intron | 35.0% | |
!!! | TTTTGCAATGTTTTTTCCCC+CGG | + | chr3_1:88777914-88777933 | Msa0385300:three_prime_UTR | 35.0% |
! | TTGGTGACACAAAACTTGTA+AGG | + | chr3_1:88777946-88777965 | Msa0385300:three_prime_UTR | 35.0% |
TGGTGACACAAAACTTGTAA+GGG | + | chr3_1:88777947-88777966 | Msa0385300:three_prime_UTR | 35.0% | |
! | GACATAAGCGATTCTGAAGA+AGG | + | chr3_1:88774719-88774738 | Msa0385300:five_prime_UTR | 40.0% |
GGTGAAGATGAACAAGGTTT+GGG | - | chr3_1:88774757-88774776 | None:intergenic | 40.0% | |
AGGTGAAGATGAACAAGGTT+TGG | - | chr3_1:88774758-88774777 | None:intergenic | 40.0% | |
ATGGAAGGTGAAGATGAACA+AGG | - | chr3_1:88774763-88774782 | None:intergenic | 40.0% | |
TAAGGTTCAATGTGGATGGA+AGG | - | chr3_1:88774778-88774797 | None:intergenic | 40.0% | |
ACAGGTTTCGAATCTTCAGA+AGG | - | chr3_1:88774823-88774842 | None:intergenic | 40.0% | |
AAAAAAGCCGCAAAACCCAA+CGG | + | chr3_1:88774880-88774899 | Msa0385300:CDS | 40.0% | |
TTAGAAAGGGGTTTACCGTT+GGG | - | chr3_1:88774898-88774917 | None:intergenic | 40.0% | |
AACGGTAAACCCCTTTCTAA+GGG | + | chr3_1:88774898-88774917 | Msa0385300:CDS | 40.0% | |
CTTCTCGTTCCAAAGTTAAG+AGG | + | chr3_1:88774980-88774999 | Msa0385300:CDS | 40.0% | |
CTTGAGTTCCCTCTTAACTT+TGG | - | chr3_1:88774992-88775011 | None:intergenic | 40.0% | |
CAAAGTTAAGAGGGAACTCA+AGG | + | chr3_1:88774990-88775009 | Msa0385300:CDS | 40.0% | |
GAAGGTAAAGAAAGAGGAAG+AGG | + | chr3_1:88775211-88775230 | Msa0385300:CDS | 40.0% | |
! | GGTTGTTGTTACAGAAACGA+AGG | + | chr3_1:88775232-88775251 | Msa0385300:CDS | 40.0% |
ATTGTTATGCAAACCTCTGC+AGG | - | chr3_1:88775308-88775327 | None:intergenic | 40.0% | |
!! | ATTTGTGCCATTTCGCTAGT+TGG | - | chr3_1:88775451-88775470 | None:intergenic | 40.0% |
CAAATCTGGTGAGTTCTCAA+CGG | + | chr3_1:88775466-88775485 | Msa0385300:intron | 40.0% | |
! | TGGTGATAGTGTTCTTGCAA+GGG | - | chr3_1:88775844-88775863 | None:intergenic | 40.0% |
! | ATGGTGATAGTGTTCTTGCA+AGG | - | chr3_1:88775845-88775864 | None:intergenic | 40.0% |
AATGACATGCCAACTGTGAA+TGG | + | chr3_1:88775977-88775996 | Msa0385300:intron | 40.0% | |
TTTGTTCCACGACACTTGTT+TGG | + | chr3_1:88776030-88776049 | Msa0385300:intron | 40.0% | |
TTCAAACCTCCAAATGCCTT+AGG | + | chr3_1:88776066-88776085 | Msa0385300:intron | 40.0% | |
TCAAACCTCCAAATGCCTTA+GGG | + | chr3_1:88776067-88776086 | Msa0385300:intron | 40.0% | |
! | AAATGAGACCCTAAGGCATT+TGG | - | chr3_1:88776078-88776097 | None:intergenic | 40.0% |
AGTGAGCTTAATTCCCTGTA+CGG | + | chr3_1:88776102-88776121 | Msa0385300:intron | 40.0% | |
AACCAATTCTACACCGTACA+GGG | - | chr3_1:88776118-88776137 | None:intergenic | 40.0% | |
AAACCAATTCTACACCGTAC+AGG | - | chr3_1:88776119-88776138 | None:intergenic | 40.0% | |
! | GGTTTTGCTGATGTGTACAA+AGG | + | chr3_1:88776134-88776153 | Msa0385300:intron | 40.0% |
TAATATATTTCCAGGGGCCT+GGG | - | chr3_1:88776320-88776339 | None:intergenic | 40.0% | |
TTAATATATTTCCAGGGGCC+TGG | - | chr3_1:88776321-88776340 | None:intergenic | 40.0% | |
! | TCTGTCCTTAAATTGGCTTC+TGG | - | chr3_1:88776450-88776469 | None:intergenic | 40.0% |
CTCTCAAATGATGGTTGTGA+TGG | + | chr3_1:88776502-88776521 | Msa0385300:intron | 40.0% | |
!!! | CCTCGCATAGTTTTGTTTTC+AGG | - | chr3_1:88776529-88776548 | None:intergenic | 40.0% |
CCTGAAAACAAAACTATGCG+AGG | + | chr3_1:88776526-88776545 | Msa0385300:intron | 40.0% | |
! | TTATCTACGAGTTGGAATGC+TGG | - | chr3_1:88776619-88776638 | None:intergenic | 40.0% |
AAATGCATAAGGCCTGATAG+TGG | - | chr3_1:88776688-88776707 | None:intergenic | 40.0% | |
CAAAGAGTGATGTCAGATCT+AGG | - | chr3_1:88776764-88776783 | None:intergenic | 40.0% | |
GTTAGGTAATTGCAACTGCA+AGG | - | chr3_1:88776920-88776939 | None:intergenic | 40.0% | |
TGCAGTTGCAATTACCTAAC+AGG | + | chr3_1:88776920-88776939 | Msa0385300:intron | 40.0% | |
GGAGAATACACAGAAAAAGG+TGG | - | chr3_1:88777131-88777150 | None:intergenic | 40.0% | |
TATGAGGGGATGGAATAACA+GGG | - | chr3_1:88777195-88777214 | None:intergenic | 40.0% | |
ATATGAGGGGATGGAATAAC+AGG | - | chr3_1:88777196-88777215 | None:intergenic | 40.0% | |
AGGAAAATTCAATCTGCAGC+AGG | - | chr3_1:88777359-88777378 | None:intergenic | 40.0% | |
AAGATAAGAAAAGGCGGGAA+AGG | - | chr3_1:88777379-88777398 | None:intergenic | 40.0% | |
CAGACAAGATAAGAAAAGGC+GGG | - | chr3_1:88777384-88777403 | None:intergenic | 40.0% | |
CCAGACAAGATAAGAAAAGG+CGG | - | chr3_1:88777385-88777404 | None:intergenic | 40.0% | |
ACTTTCTTTGCCACCTCTTT+AGG | - | chr3_1:88777598-88777617 | None:intergenic | 40.0% | |
ACAGCAGTTACAGACTTAAC+AGG | - | chr3_1:88777667-88777686 | None:intergenic | 40.0% | |
TGCTTTGATGTGGAGTTTGT+TGG | - | chr3_1:88777763-88777782 | None:intergenic | 40.0% | |
TCAGATTTGTGCTTCTTGGT+TGG | - | chr3_1:88777805-88777824 | None:intergenic | 40.0% | |
ATCTGAAAATTCGAGCTCTG+AGG | + | chr3_1:88777819-88777838 | Msa0385300:CDS | 40.0% | |
GGTGACACAAAACTTGTAAG+GGG | + | chr3_1:88777948-88777967 | Msa0385300:three_prime_UTR | 40.0% | |
ACGAATTAAAGGTCTACAGC+AGG | - | chr3_1:88778049-88778068 | None:intergenic | 40.0% | |
CCTCTCCAAAAAAATTAGGG+TGG | - | chr3_1:88778088-88778107 | None:intergenic | 40.0% | |
!!! | CCACCCTAATTTTTTTGGAG+AGG | + | chr3_1:88778085-88778104 | Msa0385300:three_prime_UTR | 40.0% |
CTTAGAAAGGGGTTTACCGT+TGG | - | chr3_1:88774899-88774918 | None:intergenic | 45.0% | |
CAACGGTAAACCCCTTTCTA+AGG | + | chr3_1:88774897-88774916 | Msa0385300:CDS | 45.0% | |
! | TTTGGAACGAGAAGCTGAAG+TGG | - | chr3_1:88774974-88774993 | None:intergenic | 45.0% |
TTTGTCATCGTCGTCTTCGT+CGG | - | chr3_1:88775031-88775050 | None:intergenic | 45.0% | |
! | TGTGCTGTGTTAGGTTGTGA+AGG | + | chr3_1:88775169-88775188 | Msa0385300:intron | 45.0% |
GTCTCGTAGAAAACCCTAGA+AGG | - | chr3_1:88775412-88775431 | None:intergenic | 45.0% | |
CTAGCGAAATGGCACAAATC+TGG | + | chr3_1:88775452-88775471 | Msa0385300:CDS | 45.0% | |
GTTTCTCAGTCTCTTCTGAG+TGG | - | chr3_1:88775907-88775926 | None:intergenic | 45.0% | |
! | TACAGTCCAAACAAGTGTCG+TGG | - | chr3_1:88776039-88776058 | None:intergenic | 45.0% |
TTCCCTGTACGGTGTAGAAT+TGG | + | chr3_1:88776113-88776132 | Msa0385300:intron | 45.0% | |
TAGAACCGCTAGGAACTACA+GGG | - | chr3_1:88776653-88776672 | None:intergenic | 45.0% | |
TTAGAACCGCTAGGAACTAC+AGG | - | chr3_1:88776654-88776673 | None:intergenic | 45.0% | |
! | GCATGCAATTTAGAACCGCT+AGG | - | chr3_1:88776663-88776682 | None:intergenic | 45.0% |
AATTGCATGCCACCACTATC+AGG | + | chr3_1:88776673-88776692 | Msa0385300:intron | 45.0% | |
GGGAAGAGAGACAAGAAAAG+AGG | - | chr3_1:88777174-88777193 | None:intergenic | 45.0% | |
ATGAGGGGATGGAATAACAG+GGG | - | chr3_1:88777194-88777213 | None:intergenic | 45.0% | |
AGTTGTCGTAACCCAGTTAC+TGG | + | chr3_1:88777270-88777289 | Msa0385300:intron | 45.0% | |
! | CCGCCTTTTCTTATCTTGTC+TGG | + | chr3_1:88777382-88777401 | Msa0385300:intron | 45.0% |
! | TGATTGCAACTGCAGGTTGA+TGG | + | chr3_1:88777558-88777577 | Msa0385300:intron | 45.0% |
!! | AACTGCAGGTTGATGGAATC+AGG | + | chr3_1:88777565-88777584 | Msa0385300:intron | 45.0% |
! | ATCAGGCTTGCTTCCTAAAG+AGG | + | chr3_1:88777582-88777601 | Msa0385300:CDS | 45.0% |
AAAGAAAGCTCTGCAGCAGA+AGG | + | chr3_1:88777633-88777652 | Msa0385300:CDS | 45.0% | |
GGAGTTTGTCTGCTTTGATG+TGG | - | chr3_1:88777773-88777792 | None:intergenic | 45.0% | |
TGTCACCAACAACAAATGCC+GGG | - | chr3_1:88777935-88777954 | None:intergenic | 45.0% | |
GTGTCACCAACAACAAATGC+CGG | - | chr3_1:88777936-88777955 | None:intergenic | 45.0% | |
! | AAACTTGTAAGGGGCACATG+AGG | + | chr3_1:88777957-88777976 | Msa0385300:three_prime_UTR | 45.0% |
!! | TAAAAAAAAAAAAAAAAACT+AGG | - | chr3_1:88775106-88775125 | None:intergenic | 5.0% |
!!! | CTCTCTTGTTTTCGGGACTC+CGG | - | chr3_1:88774691-88774710 | None:intergenic | 50.0% |
! | GGGTTTACCGTTGGGTTTTG+CGG | - | chr3_1:88774890-88774909 | None:intergenic | 50.0% |
GTTATGCAAACCTCTGCAGG+TGG | - | chr3_1:88775305-88775324 | None:intergenic | 50.0% | |
! | TGAGACCCTAAGGCATTTGG+AGG | - | chr3_1:88776075-88776094 | None:intergenic | 50.0% |
TATAACACCAAGCCTAGCCC+AGG | + | chr3_1:88776300-88776319 | Msa0385300:intron | 50.0% | |
!! | TGCATAAGGCCTGATAGTGG+TGG | - | chr3_1:88776685-88776704 | None:intergenic | 50.0% |
TCTCCATGACCTTTACCCCA+AGG | + | chr3_1:88777146-88777165 | Msa0385300:intron | 50.0% | |
!! | ACAAGAAAAGAGGCGCCTTG+GGG | - | chr3_1:88777164-88777183 | None:intergenic | 50.0% |
!! | GACAAGAAAAGAGGCGCCTT+GGG | - | chr3_1:88777165-88777184 | None:intergenic | 50.0% |
!! | AGACAAGAAAAGAGGCGCCT+TGG | - | chr3_1:88777166-88777185 | None:intergenic | 50.0% |
! | GCGTTACTGATTGCAACTGC+AGG | + | chr3_1:88777551-88777570 | Msa0385300:intron | 50.0% |
! | AGGCTTGCTTCCTAAAGAGG+TGG | + | chr3_1:88777585-88777604 | Msa0385300:CDS | 50.0% |
! | CGGAAGAATTTGGGGTAGCT+GGG | - | chr3_1:88777729-88777748 | None:intergenic | 50.0% |
! | ACGGAAGAATTTGGGGTAGC+TGG | - | chr3_1:88777730-88777749 | None:intergenic | 50.0% |
!! | CTTCTTGGTTGGCTTCGATG+TGG | - | chr3_1:88777794-88777813 | None:intergenic | 50.0% |
!! | TTTCCCCCGGCATTTGTTGT+TGG | + | chr3_1:88777927-88777946 | Msa0385300:three_prime_UTR | 50.0% |
TCACCAACAACAAATGCCGG+GGG | - | chr3_1:88777933-88777952 | None:intergenic | 50.0% | |
GTCACCAACAACAAATGCCG+GGG | - | chr3_1:88777934-88777953 | None:intergenic | 50.0% | |
GCTGAAGTGGCACGAGGAAT+GGG | - | chr3_1:88774961-88774980 | None:intergenic | 55.0% | |
AGCTGAAGTGGCACGAGGAA+TGG | - | chr3_1:88774962-88774981 | None:intergenic | 55.0% | |
GGTGGATCACGTTTCTGTCC+AGG | - | chr3_1:88775287-88775306 | None:intergenic | 55.0% | |
GAAACGTGATCCACCTGCAG+AGG | + | chr3_1:88775292-88775311 | Msa0385300:CDS | 55.0% | |
!! | AAAGAGGCGCCTTGGGGTAA+AGG | - | chr3_1:88777158-88777177 | None:intergenic | 55.0% |
! | GTGGCACGAGGAATGGGTTC+AGG | - | chr3_1:88774955-88774974 | None:intergenic | 60.0% |
CGAGAAGCTGAAGTGGCACG+AGG | - | chr3_1:88774967-88774986 | None:intergenic | 60.0% | |
TATTTCCAGGGGCCTGGGCT+AGG | - | chr3_1:88776315-88776334 | None:intergenic | 60.0% | |
ACCGGCCCTGTAGTTCCTAG+CGG | + | chr3_1:88776645-88776664 | Msa0385300:intron | 60.0% | |
ACCGCTAGGAACTACAGGGC+CGG | - | chr3_1:88776649-88776668 | None:intergenic | 60.0% | |
GCGCCTTGGGGTAAAGGTCA+TGG | - | chr3_1:88777152-88777171 | None:intergenic | 60.0% | |
! | CCAGGGGCCTGGGCTAGGCT+TGG | - | chr3_1:88776310-88776329 | None:intergenic | 75.0% |
CCAAGCCTAGCCCAGGCCCC+TGG | + | chr3_1:88776307-88776326 | Msa0385300:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 88774688 | 88778226 | 88774688 | ID=Msa0385300;Name=Msa0385300 |
chr3_1 | mRNA | 88774688 | 88778226 | 88774688 | ID=Msa0385300-mRNA-1;Parent=Msa0385300;Name=Msa0385300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=129|1|1|1|1|1|4|326|264 |
chr3_1 | exon | 88774688 | 88775080 | 88774688 | ID=Msa0385300-mRNA-1:exon:23956;Parent=Msa0385300-mRNA-1 |
chr3_1 | exon | 88775182 | 88775313 | 88775182 | ID=Msa0385300-mRNA-1:exon:23957;Parent=Msa0385300-mRNA-1 |
chr3_1 | exon | 88775403 | 88775473 | 88775403 | ID=Msa0385300-mRNA-1:exon:23958;Parent=Msa0385300-mRNA-1 |
chr3_1 | exon | 88777573 | 88778226 | 88777573 | ID=Msa0385300-mRNA-1:exon:23959;Parent=Msa0385300-mRNA-1 |
chr3_1 | five_prime_UTR | 88774688 | 88774816 | 88774688 | ID=Msa0385300-mRNA-1:five_prime_utr;Parent=Msa0385300-mRNA-1 |
chr3_1 | CDS | 88774817 | 88775080 | 88774817 | ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1 |
chr3_1 | CDS | 88775182 | 88775313 | 88775182 | ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1 |
chr3_1 | CDS | 88775403 | 88775473 | 88775403 | ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1 |
chr3_1 | CDS | 88777573 | 88777900 | 88777573 | ID=Msa0385300-mRNA-1:cds;Parent=Msa0385300-mRNA-1 |
chr3_1 | three_prime_UTR | 88777901 | 88778226 | 88777901 | ID=Msa0385300-mRNA-1:three_prime_utr;Parent=Msa0385300-mRNA-1 |
Gene Sequence |
Protein sequence |