Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384590 | XP_003617931.1 | 95.833 | 264 | 11 | 0 | 5 | 268 | 66 | 329 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384590 | sp|Q9SR43|PFBS_ARATH | 58.431 | 255 | 106 | 0 | 12 | 266 | 74 | 328 | 1.25e-112 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384590 | G7KEL5 | 95.833 | 264 | 11 | 0 | 5 | 268 | 66 | 329 | 0.0 | 527 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0779450 | Msa1384590 | 0.817434 | 3.304161e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384590 | MtrunA17_Chr5g0447391 | 95.833 | 264 | 11 | 0 | 5 | 268 | 66 | 329 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384590 | AT3G09150.2 | 58.431 | 255 | 106 | 0 | 12 | 266 | 74 | 328 | 1.27e-113 | 330 |
| Msa1384590 | AT3G09150.1 | 57.708 | 253 | 107 | 0 | 14 | 266 | 74 | 326 | 1.13e-111 | 325 |
| Msa1384590 | AT3G09150.3 | 58.776 | 245 | 101 | 0 | 22 | 266 | 5 | 249 | 1.79e-110 | 320 |
| Msa1384590 | AT3G09150.4 | 56.784 | 199 | 86 | 0 | 12 | 210 | 74 | 272 | 1.28e-83 | 252 |
Find 53 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAAACTAAATTTAAATA+TGG | 0.224107 | tig0020668:-1064 | None:intergenic |
| CAGTTACCTCAGCATATTTC+AGG | 0.226358 | tig0020668:-2411 | None:intergenic |
| CAACACAACAATGTTTGTTT+TGG | 0.283890 | tig0020668:-1958 | None:intergenic |
| GGGACATCATACTCCGCTTT+TGG | 0.286944 | tig0020668:-1906 | None:intergenic |
| ATCTATACCCACTAATAATA+TGG | 0.288860 | tig0020668:-1182 | None:intergenic |
| TTAAGAAGCTTTCTCTTTAA+CGG | 0.302166 | tig0020668:+3320 | Msa1384590:CDS |
| GTATAATTCCTTGAATTCTA+AGG | 0.316064 | tig0020668:+1244 | Msa1384590:CDS |
| AAATTATGATATTCTGTATT+CGG | 0.324062 | tig0020668:+2819 | Msa1384590:CDS |
| CATTTCAAGCTGACAAGATT+AGG | 0.335439 | tig0020668:+1294 | Msa1384590:CDS |
| TTTACCATCCTTAGAATTCA+AGG | 0.336886 | tig0020668:-1252 | None:intergenic |
| AATAAGAAAGGCGGTATTGC+TGG | 0.342144 | tig0020668:+3413 | Msa1384590:CDS |
| TAATATCATGTAATGGGTTA+AGG | 0.410294 | tig0020668:-2336 | None:intergenic |
| GATTGATAATATCATGTAAT+GGG | 0.410351 | tig0020668:-2342 | None:intergenic |
| ATAAATTCAAACTACCGTTT+CGG | 0.414541 | tig0020668:-3033 | None:intergenic |
| GTTCCTCACCATATTATTAG+TGG | 0.418727 | tig0020668:+1174 | Msa1384590:five_prime_UTR |
| TGCAATTGAAACAGAAGATC+AGG | 0.427480 | tig0020668:-1145 | None:intergenic |
| TTTAAAAGCTTAATTCCTCT+TGG | 0.429833 | tig0020668:+2388 | Msa1384590:CDS |
| ATTACATGATATTATCAATC+AGG | 0.451950 | tig0020668:+2345 | Msa1384590:CDS |
| TGATTGATAATATCATGTAA+TGG | 0.466631 | tig0020668:-2343 | None:intergenic |
| TTGAATTCTAAGGATGGTAA+AGG | 0.495204 | tig0020668:+1254 | Msa1384590:CDS |
| TTCTTCAAAACACCTTGTCC+CGG | 0.497752 | tig0020668:-3187 | None:intergenic |
| ATTGACCTTGCAGGTATGGT+TGG | 0.504673 | tig0020668:+2923 | Msa1384590:intron |
| ATGTTGTGCTTCAAGATTGT+GGG | 0.521421 | tig0020668:-2991 | None:intergenic |
| CCTCATTACCACGGCGAGGA+AGG | 0.525362 | tig0020668:+3383 | Msa1384590:CDS |
| CCTTCCTCGCCGTGGTAATG+AGG | 0.528698 | tig0020668:-3383 | None:intergenic |
| TTCCTCACCATATTATTAGT+GGG | 0.534393 | tig0020668:+1175 | Msa1384590:five_prime_UTR |
| GATGCAAGCGGAAAATTCCT+TGG | 0.538917 | tig0020668:+3461 | Msa1384590:CDS |
| ATAAGAAAGGCGGTATTGCT+GGG | 0.540548 | tig0020668:+3414 | Msa1384590:CDS |
| GAAGGAACTCTAAATAAGAA+AGG | 0.549129 | tig0020668:+3401 | Msa1384590:CDS |
| TTTAACGGAGTCGATGAACT+AGG | 0.550164 | tig0020668:+3335 | Msa1384590:CDS |
| TATCAATCAGGATGACTACA+AGG | 0.558278 | tig0020668:+2357 | Msa1384590:CDS |
| CTTGTGAGCTTCCCTCCCCA+TGG | 0.567732 | tig0020668:-2736 | None:intergenic |
| AACTTTGTCCAAATGACTAT+CGG | 0.570194 | tig0020668:-2781 | None:intergenic |
| TCTAACATGGAGAGCCGAAA+CGG | 0.572541 | tig0020668:+3019 | Msa1384590:CDS |
| CATTGAGACAGAAACAATGC+AGG | 0.572862 | tig0020668:+1334 | Msa1384590:CDS |
| TGAAACTAGGATCCGGGACA+AGG | 0.575425 | tig0020668:+3175 | Msa1384590:intron |
| AATTCCTTGAATTCTAAGGA+TGG | 0.582349 | tig0020668:+1248 | Msa1384590:CDS |
| TATGTTGTGCTTCAAGATTG+TGG | 0.585564 | tig0020668:-2992 | None:intergenic |
| CTTTACCGTATTTCCAAAAG+CGG | 0.595083 | tig0020668:+1893 | Msa1384590:CDS |
| TTAGAGTTCCTTCCTCGCCG+TGG | 0.597712 | tig0020668:-3391 | None:intergenic |
| CACAACATAGATATCTAACA+TGG | 0.611644 | tig0020668:+3006 | Msa1384590:CDS |
| AAAAGTTGGCACAAAATATG+GGG | 0.624106 | tig0020668:-1926 | None:intergenic |
| GATTGGGGACACACTTGCAA+AGG | 0.626585 | tig0020668:+3213 | Msa1384590:CDS |
| ACGGCAGTAAAAGAGACTGA+TGG | 0.629580 | tig0020668:+2957 | Msa1384590:CDS |
| ATGGTTGGAATTGATAGCCA+CGG | 0.645627 | tig0020668:+2938 | Msa1384590:CDS |
| GGCATTCAGAGATTACTACA+AGG | 0.646161 | tig0020668:+2840 | Msa1384590:CDS |
| AATCGCCCATGGGATGCAAG+CGG | 0.651732 | tig0020668:+3449 | Msa1384590:CDS |
| TCAGCATATTTCAGGCCAAG+AGG | 0.659341 | tig0020668:-2403 | None:intergenic |
| TCTCAATGATCATACTACGT+AGG | 0.666289 | tig0020668:-1319 | None:intergenic |
| TCTTGGCCTGAAATATGCTG+AGG | 0.671577 | tig0020668:+2405 | Msa1384590:CDS |
| TACCCACTAATAATATGGTG+AGG | 0.683923 | tig0020668:-1177 | None:intergenic |
| GGAACTCTAAATAAGAAAGG+CGG | 0.694422 | tig0020668:+3404 | Msa1384590:CDS |
| GAAGATCAGGAAGTGCCTAG+TGG | 0.707872 | tig0020668:-1132 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAATAATTTACCA+AGG | - | tig0020668:3481-3500 | None:intergenic | 10.0% |
| !!! | AAATTTGAATTTTATTTTTC+CGG | + | tig0020668:4619-4638 | Msa1384590:intron | 10.0% |
| !!! | AATTTGTTTTAATATTAGTA+AGG | + | tig0020668:4686-4705 | Msa1384590:intron | 10.0% |
| !! | TAAAGAATAAAAAGAATTAA+TGG | - | tig0020668:5631-5650 | None:intergenic | 10.0% |
| !!! | ATCTCATATTTTTTTATTTA+TGG | - | tig0020668:5834-5853 | None:intergenic | 10.0% |
| !!! | TTTTATTTGTACAAAAAAAA+AGG | + | tig0020668:5925-5944 | Msa1384590:intron | 10.0% |
| !!! | TTTTATTGAATTATCATTTT+AGG | + | tig0020668:6117-6136 | Msa1384590:intron | 10.0% |
| !! | AATTTAATTAAGGAAAATTT+AGG | + | tig0020668:6257-6276 | Msa1384590:intron | 10.0% |
| !!! | GTTTTTGTAAAAAAAAAAAA+GGG | + | tig0020668:6303-6322 | Msa1384590:intron | 10.0% |
| !!! | TATATTTTATGAAAATTTTG+GGG | - | tig0020668:6638-6657 | None:intergenic | 10.0% |
| !! | CAAATTGTTATATATAAGAT+TGG | + | tig0020668:1377-1396 | Msa1384590:intron | 15.0% |
| !! | TACATTATCTTATTATATGA+AGG | - | tig0020668:1522-1541 | None:intergenic | 15.0% |
| !! | AATAAGATAATGTAGTTTAA+CGG | + | tig0020668:1528-1547 | Msa1384590:intron | 15.0% |
| !! | TATTTATACATTTATACATG+TGG | - | tig0020668:2017-2036 | None:intergenic | 15.0% |
| !! | AACTAAAATAAAGAATAACA+AGG | - | tig0020668:2045-2064 | None:intergenic | 15.0% |
| !! | TTATTACAAAAACTTATCAT+GGG | + | tig0020668:2193-2212 | Msa1384590:intron | 15.0% |
| !! | AAATTATGATATTCTGTATT+CGG | + | tig0020668:2819-2838 | Msa1384590:CDS | 15.0% |
| !! | AAACAATTCAAAATTACAAA+TGG | - | tig0020668:3126-3145 | None:intergenic | 15.0% |
| !! | TATGTATACAGAATTAAATT+CGG | + | tig0020668:4078-4097 | Msa1384590:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGTTTG+AGG | - | tig0020668:5599-5618 | None:intergenic | 15.0% |
| !!! | TTAATTCTTTAATCCTTTTA+AGG | + | tig0020668:5675-5694 | Msa1384590:intron | 15.0% |
| !! | ATTATGTTTAATTCCTTAAA+AGG | - | tig0020668:5691-5710 | None:intergenic | 15.0% |
| !! | AATTCATATTTCTTCATTTA+TGG | - | tig0020668:5747-5766 | None:intergenic | 15.0% |
| !! | AAAATGAATTGTGTATTTAA+TGG | - | tig0020668:5776-5795 | None:intergenic | 15.0% |
| !!! | AATTCATTTTATAAAGTTGT+TGG | + | tig0020668:5786-5805 | Msa1384590:intron | 15.0% |
| !!! | TTAATTCTTTAATCCTTTTA+AGG | - | tig0020668:5675-5694 | None:intergenic | 15.0% |
| !!! | GGTTTTTGTAAAAAAAAAAA+AGG | + | tig0020668:6302-6321 | Msa1384590:intron | 15.0% |
| !! | TTAATGAATATATTGGACTA+GGG | - | tig0020668:1617-1636 | None:intergenic | 20.0% |
| !! | TTTAATGAATATATTGGACT+AGG | - | tig0020668:1618-1637 | None:intergenic | 20.0% |
| !! | ACTAAAATAATAGAGAAGAA+TGG | - | tig0020668:1826-1845 | None:intergenic | 20.0% |
| !!! | GTTATTCTTTATTTTAGTTG+TGG | + | tig0020668:2046-2065 | Msa1384590:intron | 20.0% |
| !!! | AGTGATAAACTTTTATTAGA+GGG | - | tig0020668:2174-2193 | None:intergenic | 20.0% |
| !!! | AAGTGATAAACTTTTATTAG+AGG | - | tig0020668:2175-2194 | None:intergenic | 20.0% |
| !! | CTTATTACAAAAACTTATCA+TGG | + | tig0020668:2192-2211 | Msa1384590:intron | 20.0% |
| !!! | GATTGATAATATCATGTAAT+GGG | - | tig0020668:2345-2364 | None:intergenic | 20.0% |
| !!! | TGATTGATAATATCATGTAA+TGG | - | tig0020668:2346-2365 | None:intergenic | 20.0% |
| !! | ATTACATGATATTATCAATC+AGG | + | tig0020668:2345-2364 | Msa1384590:CDS | 20.0% |
| !!! | ACAGAATATCATAATTTTGT+GGG | - | tig0020668:2816-2835 | None:intergenic | 20.0% |
| !!! | TACAGAATATCATAATTTTG+TGG | - | tig0020668:2817-2836 | None:intergenic | 20.0% |
| !! | TAAAATATTATGAATTGCCA+TGG | - | tig0020668:2881-2900 | None:intergenic | 20.0% |
| !! | ACAATAATAGTATAATACGA+AGG | - | tig0020668:4023-4042 | None:intergenic | 20.0% |
| !! | GCAGATAAATAATAAAATCT+AGG | + | tig0020668:4215-4234 | Msa1384590:intron | 20.0% |
| !! | AGTTTATTACATTATGGATT+TGG | + | tig0020668:4350-4369 | Msa1384590:intron | 20.0% |
| !! | GTTTATTACATTATGGATTT+GGG | + | tig0020668:4351-4370 | Msa1384590:intron | 20.0% |
| !! | GATATTTATCATATACATCA+TGG | - | tig0020668:4532-4551 | None:intergenic | 20.0% |
| !! | AATCAATTATTAAATCACAC+CGG | - | tig0020668:4641-4660 | None:intergenic | 20.0% |
| !! | TCTAATTATATCTTTCACAT+TGG | - | tig0020668:4665-4684 | None:intergenic | 20.0% |
| !!! | ATCAATTTTTTTCAATCAAG+TGG | + | tig0020668:5172-5191 | Msa1384590:intron | 20.0% |
| !!! | TCAATTTTTTTCAATCAAGT+GGG | + | tig0020668:5173-5192 | Msa1384590:intron | 20.0% |
| !! | TTTATGTGTAAAATTCGATT+GGG | + | tig0020668:5243-5262 | Msa1384590:intron | 20.0% |
| !!! | TCAATTTTTTTTCAATCAAG+TGG | + | tig0020668:5279-5298 | Msa1384590:intron | 20.0% |
| !!! | CAATTTTTTTTCAATCAAGT+GGG | + | tig0020668:5280-5299 | Msa1384590:intron | 20.0% |
| !!! | TTTTTTGAAGAATAGAAAAG+TGG | + | tig0020668:5902-5921 | Msa1384590:intron | 20.0% |
| !! | TATGAGAGATGAATAATATT+CGG | - | tig0020668:6154-6173 | None:intergenic | 20.0% |
| !! | ATTGTGTTTAATTCCTTAAA+AGG | + | tig0020668:6222-6241 | Msa1384590:intron | 20.0% |
| !! | TAAAAAAAAAAAAGGGTTTG+AGG | + | tig0020668:6310-6329 | Msa1384590:intron | 20.0% |
| !! | AAAACAAATTGAATAATGCA+AGG | - | tig0020668:6510-6529 | None:intergenic | 20.0% |
| ! | ATCTATACCCACTAATAATA+TGG | - | tig0020668:1185-1204 | None:intergenic | 25.0% |
| ! | GTATAATTCCTTGAATTCTA+AGG | + | tig0020668:1244-1263 | Msa1384590:CDS | 25.0% |
| ! | TAAATTACCAACGACTAAAA+GGG | - | tig0020668:1419-1438 | None:intergenic | 25.0% |
| ! | ATAAATTACCAACGACTAAA+AGG | - | tig0020668:1420-1439 | None:intergenic | 25.0% |
| ! | TCGGTAAAGAATATCAAATT+TGG | - | tig0020668:1491-1510 | None:intergenic | 25.0% |
| ! | ATAATAGAGAAGAATGGAAA+TGG | - | tig0020668:1820-1839 | None:intergenic | 25.0% |
| !! | ATATGTCTGATGTTTTTCTA+TGG | + | tig0020668:1849-1868 | Msa1384590:intron | 25.0% |
| ! | AAAAAGTTGGCACAAAATAT+GGG | - | tig0020668:1930-1949 | None:intergenic | 25.0% |
| !!! | TAATATCATGTAATGGGTTA+AGG | - | tig0020668:2339-2358 | None:intergenic | 25.0% |
| ! | TTTAAAAGCTTAATTCCTCT+TGG | + | tig0020668:2388-2407 | Msa1384590:CDS | 25.0% |
| !! | AAGATTTGTATGTTCAGTTT+TGG | + | tig0020668:2467-2486 | Msa1384590:intron | 25.0% |
| ! | AATATAAAAACACACGTGTA+CGG | - | tig0020668:2648-2667 | None:intergenic | 25.0% |
| ! | ATAAATTCAAACTACCGTTT+CGG | - | tig0020668:3036-3055 | None:intergenic | 25.0% |
| !! | ATCTCAAACTTTTGTCTAAT+TGG | + | tig0020668:3054-3073 | Msa1384590:intron | 25.0% |
| !! | TCTCAAACTTTTGTCTAATT+GGG | + | tig0020668:3055-3074 | Msa1384590:intron | 25.0% |
| !!! | TTTTTACGATTTCTTGTTTG+CGG | + | tig0020668:3144-3163 | Msa1384590:intron | 25.0% |
| !!! | AATATTTTGAAACTAGGATC+CGG | + | tig0020668:3168-3187 | Msa1384590:intron | 25.0% |
| !! | TTTTTGTAGAGAAACAAAAC+TGG | - | tig0020668:3255-3274 | None:intergenic | 25.0% |
| ! | TTAAGAAGCTTTCTCTTTAA+CGG | + | tig0020668:3320-3339 | Msa1384590:CDS | 25.0% |
| ! | TTTAAAGAAATTTGCCAAGA+GGG | - | tig0020668:3524-3543 | None:intergenic | 25.0% |
| !!! | TTTGATCTTTGGGATATTTT+AGG | + | tig0020668:3825-3844 | Msa1384590:intron | 25.0% |
| ! | TACATATAATACAACAAGCA+TGG | - | tig0020668:4064-4083 | None:intergenic | 25.0% |
| ! | AATAAAATCTAGGAAACTTG+AGG | + | tig0020668:4225-4244 | Msa1384590:intron | 25.0% |
| !! | AAATCAATCTAAAACACACA+TGG | - | tig0020668:4290-4309 | None:intergenic | 25.0% |
| ! | GTAATAAACTATCCCAAATA+TGG | - | tig0020668:4340-4359 | None:intergenic | 25.0% |
| ! | TGGGATAGTTTATTACATTA+TGG | + | tig0020668:4344-4363 | Msa1384590:intron | 25.0% |
| !! | TTTTATGTGTAAACTTCGAT+TGG | + | tig0020668:5136-5155 | Msa1384590:intron | 25.0% |
| ! | TTTATGTGTAAACTTCGATT+GGG | + | tig0020668:5137-5156 | Msa1384590:intron | 25.0% |
| ! | GTTTATGTGTAAAATTCGAT+TGG | + | tig0020668:5242-5261 | Msa1384590:intron | 25.0% |
| ! | AACAGAATATTATAAGGGTA+AGG | - | tig0020668:5388-5407 | None:intergenic | 25.0% |
| ! | GTGACAACAGAATATTATAA+GGG | - | tig0020668:5393-5412 | None:intergenic | 25.0% |
| ! | AGTGACAACAGAATATTATA+AGG | - | tig0020668:5394-5413 | None:intergenic | 25.0% |
| ! | GAATAATATTCGGTAGTTAA+TGG | - | tig0020668:6144-6163 | None:intergenic | 25.0% |
| ! | CTCTCATATTTCTTCATTTA+TGG | + | tig0020668:6166-6185 | Msa1384590:intron | 25.0% |
| ! | AGTGCATAAACTAAAATGAA+GGG | - | tig0020668:6538-6557 | None:intergenic | 25.0% |
| ! | TAGTGCATAAACTAAAATGA+AGG | - | tig0020668:6539-6558 | None:intergenic | 25.0% |
| ! | TTGCAATAATTTTTGCCACT+AGG | + | tig0020668:1117-1136 | Msa1384590:five_prime_UTR | 30.0% |
| TTCCTCACCATATTATTAGT+GGG | + | tig0020668:1175-1194 | Msa1384590:five_prime_UTR | 30.0% | |
| ! | TTTTCTTATGTTGTCTTACC+AGG | + | tig0020668:1217-1236 | Msa1384590:CDS | 30.0% |
| ! | TCAAGGAATTATACTTTTCC+TGG | - | tig0020668:1238-1257 | None:intergenic | 30.0% |
| ! | AATTCCTTGAATTCTAAGGA+TGG | + | tig0020668:1248-1267 | Msa1384590:CDS | 30.0% |
| TTTACCATCCTTAGAATTCA+AGG | - | tig0020668:1255-1274 | None:intergenic | 30.0% | |
| ! | TTGAATTCTAAGGATGGTAA+AGG | + | tig0020668:1254-1273 | Msa1384590:CDS | 30.0% |
| !! | CTAAAAGGGTTAATTTGTTG+AGG | - | tig0020668:1405-1424 | None:intergenic | 30.0% |
| ! | AAATTAACCCTTTTAGTCGT+TGG | + | tig0020668:1409-1428 | Msa1384590:intron | 30.0% |
| !!! | ATTTTTTCTATCAGATCCTC+AGG | + | tig0020668:1574-1593 | Msa1384590:intron | 30.0% |
| CAAATATCTTCTCTATTCTC+CGG | + | tig0020668:1687-1706 | Msa1384590:intron | 30.0% | |
| !! | TGTATTTGAACTTTGAAGTC+CGG | - | tig0020668:1709-1728 | None:intergenic | 30.0% |
| AATAGAAATGCCAGTTAGAT+TGG | - | tig0020668:1750-1769 | None:intergenic | 30.0% | |
| AAAAGTTGGCACAAAATATG+GGG | - | tig0020668:1929-1948 | None:intergenic | 30.0% | |
| GAAAAAGTTGGCACAAAATA+TGG | - | tig0020668:1931-1950 | None:intergenic | 30.0% | |
| ! | CAACACAACAATGTTTGTTT+TGG | - | tig0020668:1961-1980 | None:intergenic | 30.0% |
| ! | AAACGAGTTTAAAGTTGCAA+AGG | - | tig0020668:2100-2119 | None:intergenic | 30.0% |
| TGAAAAACTCATCACTCTTA+TGG | - | tig0020668:2564-2583 | None:intergenic | 30.0% | |
| TAATTAGAGTTCTCTCTCAA+AGG | + | tig0020668:2671-2690 | Msa1384590:intron | 30.0% | |
| !!! | TTTTTTCACCGATAGTCATT+TGG | + | tig0020668:2773-2792 | Msa1384590:CDS | 30.0% |
| AACTTTGTCCAAATGACTAT+CGG | - | tig0020668:2784-2803 | None:intergenic | 30.0% | |
| CACAACATAGATATCTAACA+TGG | + | tig0020668:3006-3025 | Msa1384590:CDS | 30.0% | |
| ATAAACACATGCATTTCTCA+TGG | - | tig0020668:3103-3122 | None:intergenic | 30.0% | |
| !!! | TGCGGAAATATTTTGAAACT+AGG | + | tig0020668:3162-3181 | Msa1384590:intron | 30.0% |
| !!! | ATATTTTGAAACTAGGATCC+GGG | + | tig0020668:3169-3188 | Msa1384590:intron | 30.0% |
| ! | GATTATTTTCCTCATTACCA+CGG | + | tig0020668:3374-3393 | Msa1384590:CDS | 30.0% |
| GAAGGAACTCTAAATAAGAA+AGG | + | tig0020668:3401-3420 | Msa1384590:CDS | 30.0% | |
| TTAAAGAAATTTGCCAAGAG+GGG | - | tig0020668:3523-3542 | None:intergenic | 30.0% | |
| ! | CTTTAAAGAAATTTGCCAAG+AGG | - | tig0020668:3525-3544 | None:intergenic | 30.0% |
| TATCATGTAGCTCAATGTAT+AGG | - | tig0020668:3678-3697 | None:intergenic | 30.0% | |
| !! | CGATCTTTAGAATTTCAATG+CGG | + | tig0020668:3749-3768 | Msa1384590:intron | 30.0% |
| !! | TATTTTAGGTCAATGAATGC+TGG | + | tig0020668:3839-3858 | Msa1384590:intron | 30.0% |
| TGGTTAAATTTCTTTGACTC+AGG | + | tig0020668:3889-3908 | Msa1384590:intron | 30.0% | |
| GTATACAGAATTAAATTCGG+AGG | + | tig0020668:4081-4100 | Msa1384590:intron | 30.0% | |
| AAAGCAAATATCAACACTGA+TGG | + | tig0020668:4107-4126 | Msa1384590:intron | 30.0% | |
| ! | CTTCCGTTTTGTAGTTTAAA+GGG | + | tig0020668:4493-4512 | Msa1384590:intron | 30.0% |
| ! | TTCCGTTTTGTAGTTTAAAG+GGG | + | tig0020668:4494-4513 | Msa1384590:intron | 30.0% |
| ACAATGATCTCTATGAATGA+TGG | - | tig0020668:4743-4762 | None:intergenic | 30.0% | |
| CATAGAGATCATTGTAATGT+AGG | + | tig0020668:4748-4767 | Msa1384590:intron | 30.0% | |
| !!! | GGAGATATTTTGGTATTTTG+CGG | + | tig0020668:4906-4925 | Msa1384590:intron | 30.0% |
| ATTTATGGGTTTCTTCTCTT+TGG | + | tig0020668:5010-5029 | Msa1384590:intron | 30.0% | |
| TTTATGGGTTTCTTCTCTTT+GGG | + | tig0020668:5011-5030 | Msa1384590:intron | 30.0% | |
| TTAACTATCGAGGAAAACTT+CGG | + | tig0020668:5521-5540 | Msa1384590:intron | 30.0% | |
| TGCAATTGAAACAGAAGATC+AGG | - | tig0020668:1148-1167 | None:intergenic | 35.0% | |
| GTTCCTCACCATATTATTAG+TGG | + | tig0020668:1174-1193 | Msa1384590:five_prime_UTR | 35.0% | |
| TACCCACTAATAATATGGTG+AGG | - | tig0020668:1180-1199 | None:intergenic | 35.0% | |
| CATTTCAAGCTGACAAGATT+AGG | + | tig0020668:1294-1313 | Msa1384590:CDS | 35.0% | |
| TCTCAATGATCATACTACGT+AGG | - | tig0020668:1322-1341 | None:intergenic | 35.0% | |
| GTCAAACTATGAAATCACTC+TGG | - | tig0020668:1448-1467 | None:intergenic | 35.0% | |
| GGCAGAAATATATACAGTGA+TGG | - | tig0020668:1470-1489 | None:intergenic | 35.0% | |
| TTGATATTCTTTACCGACGA+AGG | + | tig0020668:1494-1513 | Msa1384590:intron | 35.0% | |
| TTATATGAAGGATCCTTCGT+CGG | - | tig0020668:1510-1529 | None:intergenic | 35.0% | |
| GTTAGATTGGAACTGGAAAT+AGG | - | tig0020668:1737-1756 | None:intergenic | 35.0% | |
| ATTTCCAGTTCCAATCTAAC+TGG | + | tig0020668:1737-1756 | Msa1384590:intron | 35.0% | |
| GAATGGAAATGGCACAATTA+AGG | - | tig0020668:1809-1828 | None:intergenic | 35.0% | |
| CTTTACCGTATTTCCAAAAG+CGG | + | tig0020668:1893-1912 | Msa1384590:CDS | 35.0% | |
| !! | ATACTCCGCTTTTGGAAATA+CGG | - | tig0020668:1901-1920 | None:intergenic | 35.0% |
| !!! | CACAACAATGTTTGTTTTGG+CGG | - | tig0020668:1958-1977 | None:intergenic | 35.0% |
| ATTAGAGGGAAAATGATGCA+TGG | - | tig0020668:2160-2179 | None:intergenic | 35.0% | |
| AACCTTGTATTAATGATGCC+AGG | + | tig0020668:2311-2330 | Msa1384590:intron | 35.0% | |
| ACCTTGTATTAATGATGCCA+GGG | + | tig0020668:2312-2331 | Msa1384590:intron | 35.0% | |
| TATCAATCAGGATGACTACA+AGG | + | tig0020668:2357-2376 | Msa1384590:CDS | 35.0% | |
| ! | ACTTTATGCAGCATTTTCCA+TGG | + | tig0020668:2719-2738 | Msa1384590:intron | 35.0% |
| ! | CTTTATGCAGCATTTTCCAT+GGG | + | tig0020668:2720-2739 | Msa1384590:intron | 35.0% |
| ! | TTTATGCAGCATTTTCCATG+GGG | + | tig0020668:2721-2740 | Msa1384590:intron | 35.0% |
| TTATGAATTGCCATGGTCAT+AGG | - | tig0020668:2874-2893 | None:intergenic | 35.0% | |
| ATGTTGTGCTTCAAGATTGT+GGG | - | tig0020668:2994-3013 | None:intergenic | 35.0% | |
| TATGTTGTGCTTCAAGATTG+TGG | - | tig0020668:2995-3014 | None:intergenic | 35.0% | |
| ! | CTAATTGGGAGTCTTATGAT+TGG | + | tig0020668:3069-3088 | Msa1384590:intron | 35.0% |
| !!! | GTGTTTTGAAGAAGCTGATT+GGG | + | tig0020668:3197-3216 | Msa1384590:CDS | 35.0% |
| !!! | TGTTTTGAAGAAGCTGATTG+GGG | + | tig0020668:3198-3217 | Msa1384590:CDS | 35.0% |
| GCAGTATAAAACAGAAAGTG+AGG | - | tig0020668:3292-3311 | None:intergenic | 35.0% | |
| ! | CACTTTCTGTTTTATACTGC+AGG | + | tig0020668:3292-3311 | Msa1384590:intron | 35.0% |
| GGAACTCTAAATAAGAAAGG+CGG | + | tig0020668:3404-3423 | Msa1384590:CDS | 35.0% | |
| ! | CTGTCAGTTTTTCTGTTTTC+TGG | - | tig0020668:3648-3667 | None:intergenic | 35.0% |
| !! | CTTTAGAATTTCAATGCGGT+CGG | + | tig0020668:3753-3772 | Msa1384590:intron | 35.0% |
| GGCATTAATCTTGAGCTAAA+AGG | + | tig0020668:3774-3793 | Msa1384590:intron | 35.0% | |
| TTTCGTCCATGATGAATGAT+TGG | + | tig0020668:3946-3965 | Msa1384590:intron | 35.0% | |
| ATTCGACCAATCATTCATCA+TGG | - | tig0020668:3955-3974 | None:intergenic | 35.0% | |
| GGTCGAATCAATTGACAAAT+TGG | + | tig0020668:3967-3986 | Msa1384590:intron | 35.0% | |
| AATCTAGGAAACTTGAGGTT+AGG | + | tig0020668:4230-4249 | Msa1384590:intron | 35.0% | |
| TAGTCACCTGTTTCCATATT+TGG | + | tig0020668:4324-4343 | Msa1384590:intron | 35.0% | |
| AGTCACCTGTTTCCATATTT+GGG | + | tig0020668:4325-4344 | Msa1384590:intron | 35.0% | |
| ACTATCCCAAATATGGAAAC+AGG | - | tig0020668:4333-4352 | None:intergenic | 35.0% | |
| CCTTTAAACTACAAAACGGA+AGG | - | tig0020668:4495-4514 | None:intergenic | 35.0% | |
| ! | CCTTCCGTTTTGTAGTTTAA+AGG | + | tig0020668:4492-4511 | Msa1384590:intron | 35.0% |
| TGCCCCTTTAAACTACAAAA+CGG | - | tig0020668:4499-4518 | None:intergenic | 35.0% | |
| TAAATCATGTGTCCAATGGA+TGG | - | tig0020668:4995-5014 | None:intergenic | 35.0% | |
| TCCATTGGACACATGATTTA+TGG | + | tig0020668:4995-5014 | Msa1384590:intron | 35.0% | |
| CCATTGGACACATGATTTAT+GGG | + | tig0020668:4996-5015 | Msa1384590:intron | 35.0% | |
| !! | TTGGAATCCTTTTTCATGCA+AGG | + | tig0020668:5041-5060 | Msa1384590:intron | 35.0% |
| ! | ATTATAAGGGTAAGGCATCA+TGG | - | tig0020668:5380-5399 | None:intergenic | 35.0% |
| TAACTGCCGAATTATGAAAC+CGG | + | tig0020668:5492-5511 | Msa1384590:intron | 35.0% | |
| ! | CCGAAGTTTTCAATTTTCCT+CGG | - | tig0020668:6352-6371 | None:intergenic | 35.0% |
| CCGAGGAAAATTGAAAACTT+CGG | + | tig0020668:5554-5573 | Msa1384590:intron | 35.0% | |
| AAAAAGGTTTGAGGATTCCT+CGG | - | tig0020668:5590-5609 | None:intergenic | 35.0% | |
| CCGAGGAAAATTGAAAACTT+CGG | - | tig0020668:5554-5573 | None:intergenic | 35.0% | |
| ! | CCGAAGTTTTCAATTTTCCT+CGG | + | tig0020668:6352-6371 | Msa1384590:intron | 35.0% |
| ! | TTAATTGCCGAAGTTTTCCT+CGG | + | tig0020668:6378-6397 | Msa1384590:intron | 35.0% |
| TAACTGCCGAATTATGAAAC+CGG | - | tig0020668:5492-5511 | None:intergenic | 35.0% | |
| CATTGAGACAGAAACAATGC+AGG | + | tig0020668:1334-1353 | Msa1384590:CDS | 40.0% | |
| AATGCCAGTTAGATTGGAAC+TGG | - | tig0020668:1744-1763 | None:intergenic | 40.0% | |
| GGCACAATTAAGGATGGAAA+TGG | - | tig0020668:1799-1818 | None:intergenic | 40.0% | |
| GGAAATGGCACAATTAAGGA+TGG | - | tig0020668:1805-1824 | None:intergenic | 40.0% | |
| ! | CATGTGGATTGCAGTAACTA+GGG | - | tig0020668:2001-2020 | None:intergenic | 40.0% |
| ! | ACATGTGGATTGCAGTAACT+AGG | - | tig0020668:2002-2021 | None:intergenic | 40.0% |
| AGTTTCTGTATGCAGAAAGG+TGG | - | tig0020668:2128-2147 | None:intergenic | 40.0% | |
| ACCTTTCTGCATACAGAAAC+TGG | + | tig0020668:2127-2146 | Msa1384590:intron | 40.0% | |
| ACCAGTTTCTGTATGCAGAA+AGG | - | tig0020668:2131-2150 | None:intergenic | 40.0% | |
| TCCCTGGCATCATTAATACA+AGG | - | tig0020668:2316-2335 | None:intergenic | 40.0% | |
| CAGTTACCTCAGCATATTTC+AGG | - | tig0020668:2414-2433 | None:intergenic | 40.0% | |
| TGAGGACATTGAAGAACTAG+TGG | - | tig0020668:2617-2636 | None:intergenic | 40.0% | |
| GGCATTCAGAGATTACTACA+AGG | + | tig0020668:2840-2859 | Msa1384590:CDS | 40.0% | |
| GGTATTAGTTCCTATGACCA+TGG | + | tig0020668:2861-2880 | Msa1384590:intron | 40.0% | |
| ACTCTAACAATTGACCTTGC+AGG | + | tig0020668:2914-2933 | Msa1384590:intron | 40.0% | |
| AACAATTGACCTTGCAGGTA+TGG | + | tig0020668:2919-2938 | Msa1384590:intron | 40.0% | |
| ! | ATGGTTGGAATTGATAGCCA+CGG | + | tig0020668:2938-2957 | Msa1384590:CDS | 40.0% |
| ! | GAGTCTTATGATTGGTGATC+TGG | + | tig0020668:3077-3096 | Msa1384590:intron | 40.0% |
| TTCTTCAAAACACCTTGTCC+CGG | - | tig0020668:3190-3209 | None:intergenic | 40.0% | |
| !!! | GGTGTTTTGAAGAAGCTGAT+TGG | + | tig0020668:3196-3215 | Msa1384590:CDS | 40.0% |
| GCAAAGGTAGACTGAATTTG+AGG | + | tig0020668:3229-3248 | Msa1384590:intron | 40.0% | |
| TTTAACGGAGTCGATGAACT+AGG | + | tig0020668:3335-3354 | Msa1384590:CDS | 40.0% | |
| AATAAGAAAGGCGGTATTGC+TGG | + | tig0020668:3413-3432 | Msa1384590:CDS | 40.0% | |
| ATAAGAAAGGCGGTATTGCT+GGG | + | tig0020668:3414-3433 | Msa1384590:CDS | 40.0% | |
| !! | AGTCTTTTGAAAATCGCCCA+TGG | + | tig0020668:3438-3457 | Msa1384590:CDS | 40.0% |
| !! | GTCTTTTGAAAATCGCCCAT+GGG | + | tig0020668:3439-3458 | Msa1384590:CDS | 40.0% |
| !! | TTTCTGGTTAGTTACAGCAG+TGG | - | tig0020668:3632-3651 | None:intergenic | 40.0% |
| AATCTTGAGCTAAAAGGCCA+AGG | + | tig0020668:3780-3799 | Msa1384590:intron | 40.0% | |
| !! | TGGTGCTGACATTTGATCTT+TGG | + | tig0020668:3814-3833 | Msa1384590:intron | 40.0% |
| !! | GGTGCTGACATTTGATCTTT+GGG | + | tig0020668:3815-3834 | Msa1384590:intron | 40.0% |
| AGGTTCTGCAAAGCAAATGT+TGG | + | tig0020668:3909-3928 | Msa1384590:intron | 40.0% | |
| GGTTCTGCAAAGCAAATGTT+GGG | + | tig0020668:3910-3929 | Msa1384590:intron | 40.0% | |
| ATCATGGACGAAATTTGCAG+CGG | - | tig0020668:3939-3958 | None:intergenic | 40.0% | |
| ! | GCTTGGGAGTACAAATGATA+GGG | - | tig0020668:4804-4823 | None:intergenic | 40.0% |
| ! | TGCTTGGGAGTACAAATGAT+AGG | - | tig0020668:4805-4824 | None:intergenic | 40.0% |
| GGAATACTAAAATACCCCGA+CGG | + | tig0020668:4830-4849 | Msa1384590:intron | 40.0% | |
| ! | AACTGCTGTCGGAGATATTT+TGG | + | tig0020668:4896-4915 | Msa1384590:intron | 40.0% |
| AGAGCAATGTTCAAACTGCA+AGG | + | tig0020668:4956-4975 | Msa1384590:intron | 40.0% | |
| ! | AACTGCAAGGTGTTCTGTTT+AGG | + | tig0020668:4969-4988 | Msa1384590:intron | 40.0% |
| CCCATAAATCATGTGTCCAA+TGG | - | tig0020668:4999-5018 | None:intergenic | 40.0% | |
| TCTCACTCCTTGCATGAAAA+AGG | - | tig0020668:5051-5070 | None:intergenic | 40.0% | |
| ACCTCAATTTCACTTCCAGT+CGG | + | tig0020668:5090-5109 | Msa1384590:intron | 40.0% | |
| ATCGAAAGTTACAATCCGAC+TGG | - | tig0020668:5108-5127 | None:intergenic | 40.0% | |
| TGCTGTTGACACATTGCAAA+AGG | + | tig0020668:5427-5446 | Msa1384590:intron | 40.0% | |
| TGACACATTGCAAAAGGTTG+TGG | + | tig0020668:5433-5452 | Msa1384590:intron | 40.0% | |
| ! | AAAATACGTTTTTGCCCCCT+CGG | + | tig0020668:5465-5484 | Msa1384590:intron | 40.0% |
| AAAAGGGTTTGAGGATTCCT+CGG | + | tig0020668:6319-6338 | Msa1384590:intron | 40.0% | |
| TTAACTGCCGAGGAAAACTT+CGG | - | tig0020668:6388-6407 | None:intergenic | 40.0% | |
| ! | AAAATACGTTTTTGCCCCCT+CGG | - | tig0020668:5465-5484 | None:intergenic | 40.0% |
| TGCTGTTGACACATTGCATA+AGG | - | tig0020668:6482-6501 | None:intergenic | 40.0% | |
| TGTCAACATTACACGTCCTG+AGG | - | tig0020668:1593-1612 | None:intergenic | 45.0% | |
| TTTCTATGGACTCTTCGTGC+AGG | + | tig0020668:1863-1882 | Msa1384590:intron | 45.0% | |
| TTTGGCGGTCGAGAAAAAGT+TGG | - | tig0020668:1943-1962 | None:intergenic | 45.0% | |
| !! | ATGTAATGGGTTAAGGTCCC+TGG | - | tig0020668:2332-2351 | None:intergenic | 45.0% |
| TCAGCATATTTCAGGCCAAG+AGG | - | tig0020668:2406-2425 | None:intergenic | 45.0% | |
| TCTTGGCCTGAAATATGCTG+AGG | + | tig0020668:2405-2424 | Msa1384590:CDS | 45.0% | |
| ATTGACCTTGCAGGTATGGT+TGG | + | tig0020668:2923-2942 | Msa1384590:intron | 45.0% | |
| CAATTCCAACCATACCTGCA+AGG | - | tig0020668:2931-2950 | None:intergenic | 45.0% | |
| ! | ATCAGTCTCTTTTACTGCCG+TGG | - | tig0020668:2958-2977 | None:intergenic | 45.0% |
| ACGGCAGTAAAAGAGACTGA+TGG | + | tig0020668:2957-2976 | Msa1384590:CDS | 45.0% | |
| TCTAACATGGAGAGCCGAAA+CGG | + | tig0020668:3019-3038 | Msa1384590:CDS | 45.0% | |
| ! | ATTTTCCGCTTGCATCCCAT+GGG | - | tig0020668:3457-3476 | None:intergenic | 45.0% |
| ! | AATTTTCCGCTTGCATCCCA+TGG | - | tig0020668:3458-3477 | None:intergenic | 45.0% |
| GATGCAAGCGGAAAATTCCT+TGG | + | tig0020668:3461-3480 | Msa1384590:CDS | 45.0% | |
| TATAATTGCTCCTCCCCTCT+TGG | + | tig0020668:3507-3526 | Msa1384590:intron | 45.0% | |
| AAGAAATTTGCCAAGAGGGG+AGG | - | tig0020668:3520-3539 | None:intergenic | 45.0% | |
| AGGCCAAGGTCTACTTAATG+TGG | + | tig0020668:3794-3813 | Msa1384590:intron | 45.0% | |
| GCACCACATTAAGTAGACCT+TGG | - | tig0020668:3800-3819 | None:intergenic | 45.0% | |
| ! | TCACCAGTTACCAACTTGCT+TGG | + | tig0020668:3990-4009 | Msa1384590:intron | 45.0% |
| !! | GTTCCAAGCAAGTTGGTAAC+TGG | - | tig0020668:3996-4015 | None:intergenic | 45.0% |
| AGGAGAAGTTCCAAGCAAGT+TGG | - | tig0020668:4003-4022 | None:intergenic | 45.0% | |
| ATTTGTACTCCCAAGCACCA+CGG | + | tig0020668:4808-4827 | Msa1384590:intron | 45.0% | |
| TTAGTATTCCCGTGGTGCTT+GGG | - | tig0020668:4820-4839 | None:intergenic | 45.0% | |
| TTTAGTATTCCCGTGGTGCT+TGG | - | tig0020668:4821-4840 | None:intergenic | 45.0% | |
| !!! | GGGGTATTTTAGTATTCCCG+TGG | - | tig0020668:4828-4847 | None:intergenic | 45.0% |
| ! | AAGTTAACTCCGCTGGCTAA+TGG | + | tig0020668:4853-4872 | Msa1384590:intron | 45.0% |
| GTTCTGTTTAGGCCATCCAT+TGG | + | tig0020668:4980-4999 | Msa1384590:intron | 45.0% | |
| CTTCTCTTTGGGCTGTAAGT+TGG | + | tig0020668:5022-5041 | Msa1384590:intron | 45.0% | |
| TCCGACTGGAAGTGAAATTG+AGG | - | tig0020668:5094-5113 | None:intergenic | 45.0% | |
| ! | CTGCAGCCGGTTTCATAATT+CGG | - | tig0020668:6408-6427 | None:intergenic | 45.0% |
| ACTTCGGCAATTAACTACCG+AGG | - | tig0020668:6372-6391 | None:intergenic | 45.0% | |
| ! | CTGCAGCCGGTTTCATAATT+CGG | + | tig0020668:6408-6427 | Msa1384590:intron | 45.0% |
| TGACACATTGCATAAGGCTG+TGG | - | tig0020668:6476-6495 | None:intergenic | 45.0% | |
| !! | AATTAAACTAAATTTAAATA+TGG | - | tig0020668:1067-1086 | None:intergenic | 5.0% |
| !!! | AATATTTTTAATGAATATAT+TGG | - | tig0020668:1624-1643 | None:intergenic | 5.0% |
| !! | TTTGTAAAAAAAAAAAAAAA+AGG | - | tig0020668:5606-5625 | None:intergenic | 5.0% |
| !! | TAAAGAATTAAATTTAATTA+AGG | - | tig0020668:6247-6266 | None:intergenic | 5.0% |
| !! | TAAAGAATTAAATTTAATTA+AGG | + | tig0020668:6247-6266 | Msa1384590:intron | 5.0% |
| !! | TTAAAGAATAAAAAAAATAA+TGG | + | tig0020668:6281-6300 | Msa1384590:intron | 5.0% |
| !!! | TTATATTTTATGAAAATTTT+GGG | - | tig0020668:6639-6658 | None:intergenic | 5.0% |
| !! | GAAGATCAGGAAGTGCCTAG+TGG | - | tig0020668:1135-1154 | None:intergenic | 50.0% |
| ! | TGGACTCTTCGTGCAGGTTT+TGG | + | tig0020668:1869-1888 | Msa1384590:intron | 50.0% |
| ! | GGGACATCATACTCCGCTTT+TGG | - | tig0020668:1909-1928 | None:intergenic | 50.0% |
| ACGTGTACGGTGTATGCATG+AGG | - | tig0020668:2635-2654 | None:intergenic | 50.0% | |
| ! | ATGCAGCATTTTCCATGGGG+AGG | + | tig0020668:2724-2743 | Msa1384590:intron | 50.0% |
| ! | TGCAGCATTTTCCATGGGGA+GGG | + | tig0020668:2725-2744 | Msa1384590:intron | 50.0% |
| TGAAACTAGGATCCGGGACA+AGG | + | tig0020668:3175-3194 | Msa1384590:intron | 50.0% | |
| GATTGGGGACACACTTGCAA+AGG | + | tig0020668:3213-3232 | Msa1384590:CDS | 50.0% | |
| ! | TTTTCCTCATTACCACGGCG+AGG | + | tig0020668:3379-3398 | Msa1384590:CDS | 50.0% |
| ! | TGGTTAGTTACAGCAGTGGC+AGG | - | tig0020668:3628-3647 | None:intergenic | 50.0% |
| !! | CGTCTGCAGCTGTTTTGTGT+TGG | + | tig0020668:4185-4204 | Msa1384590:intron | 50.0% |
| TTTGTACTCCCAAGCACCAC+GGG | + | tig0020668:4809-4828 | Msa1384590:intron | 50.0% | |
| ! | AGGGTAAGGCATCATGGTCT+TGG | - | tig0020668:5374-5393 | None:intergenic | 50.0% |
| ATTCGGCAGTTAACTGCCGA+GGG | - | tig0020668:6425-6444 | None:intergenic | 50.0% | |
| AATTCGGCAGTTAACTGCCG+AGG | - | tig0020668:6424-6443 | None:intergenic | 50.0% | |
| CCTCGATAGTTAACTGCAGC+CGG | - | tig0020668:5514-5533 | None:intergenic | 50.0% | |
| ACTTCGGCAGTTAACTACCG+AGG | + | tig0020668:5537-5556 | Msa1384590:intron | 50.0% | |
| AATTCGGCAGTTAACTGCCG+AGG | + | tig0020668:6424-6443 | Msa1384590:intron | 50.0% | |
| ATTCGGCAGTTAACTGCCGA+GGG | + | tig0020668:6425-6444 | Msa1384590:intron | 50.0% | |
| TTAGAGTTCCTTCCTCGCCG+TGG | - | tig0020668:3394-3413 | None:intergenic | 55.0% | |
| AATCGCCCATGGGATGCAAG+CGG | + | tig0020668:3449-3468 | Msa1384590:CDS | 55.0% | |
| CCAGTTTGAGTGCAATCGCG+TGG | - | tig0020668:3872-3891 | None:intergenic | 55.0% | |
| CCACGCGATTGCACTCAAAC+TGG | + | tig0020668:3869-3888 | Msa1384590:intron | 55.0% | |
| AGCGGAGTTAACTTCCGTCG+GGG | - | tig0020668:4847-4866 | None:intergenic | 55.0% | |
| CAGCGGAGTTAACTTCCGTC+GGG | - | tig0020668:4848-4867 | None:intergenic | 55.0% | |
| CCAGCGGAGTTAACTTCCGT+CGG | - | tig0020668:4849-4868 | None:intergenic | 55.0% | |
| ACTCCAACGCCATTAGCCAG+CGG | - | tig0020668:4865-4884 | None:intergenic | 55.0% | |
| ! | CTGGCTAATGGCGTTGGAGT+CGG | + | tig0020668:4865-4884 | Msa1384590:intron | 55.0% |
| CGGCGGTAGTTAACTGCTGT+CGG | + | tig0020668:4885-4904 | Msa1384590:intron | 55.0% | |
| CAACCATCGAGTGAGCTTCG+CGG | + | tig0020668:5218-5237 | Msa1384590:intron | 55.0% | |
| CAACCATCGAGTGAGCTTCG+CGG | + | tig0020668:5218-5237 | Msa1384590:intron | 55.0% | |
| TTCGGCAGTTAACTGCCGAG+GGG | - | tig0020668:5572-5591 | None:intergenic | 55.0% | |
| CCGGCTGCAGTTAACTATCG+AGG | + | tig0020668:5511-5530 | Msa1384590:intron | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | + | tig0020668:5570-5589 | Msa1384590:intron | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | - | tig0020668:5570-5589 | None:intergenic | 55.0% | |
| TTCGGCAGTTAACTGCCGAG+GGG | + | tig0020668:5572-5591 | Msa1384590:intron | 55.0% | |
| CTTGTGAGCTTCCCTCCCCA+TGG | - | tig0020668:2739-2758 | None:intergenic | 60.0% | |
| ! | CCTTCCTCGCCGTGGTAATG+AGG | - | tig0020668:3386-3405 | None:intergenic | 60.0% |
| CCTCATTACCACGGCGAGGA+AGG | + | tig0020668:3383-3402 | Msa1384590:CDS | 60.0% | |
| CCGACGGAAGTTAACTCCGC+TGG | + | tig0020668:4846-4865 | Msa1384590:intron | 60.0% | |
| ! | ACTCCGCTGGCTAATGGCGT+TGG | + | tig0020668:4859-4878 | Msa1384590:intron | 60.0% |
| ! | GCTAATGGCGTTGGAGTCGG+CGG | + | tig0020668:4868-4887 | Msa1384590:intron | 60.0% |
| TCGGCAGTTAACTGCCGAGG+GGG | - | tig0020668:5573-5592 | None:intergenic | 60.0% | |
| CCTCGGCAGTTAACTGCAGC+CGG | + | tig0020668:6395-6414 | Msa1384590:intron | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | + | tig0020668:5573-5592 | Msa1384590:intron | 60.0% | |
| ACGCCGCGAAGCTCACTCGA+TGG | - | tig0020668:5224-5243 | None:intergenic | 65.0% | |
| TCGCCGCGAAGCTCACTCGA+TGG | - | tig0020668:5331-5350 | None:intergenic | 65.0% | |
| CCGGCTGCAGTTAACTGCCG+AGG | - | tig0020668:6398-6417 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020668 | gene | 952 | 6658 | 952 | ID=Msa1384590;Name=Msa1384590 |
| tig0020668 | mRNA | 952 | 6658 | 952 | ID=Msa1384590-mRNA-1;Parent=Msa1384590;Name=Msa1384590-mRNA-1;_AED=0.22;_eAED=0.22;_QI=251|0.85|0.87|0.87|0.71|0.87|8|0|281 |
| tig0020668 | exon | 952 | 1355 | 952 | ID=Msa1384590-mRNA-1:exon:9144;Parent=Msa1384590-mRNA-1 |
| tig0020668 | exon | 1885 | 1979 | 1885 | ID=Msa1384590-mRNA-1:exon:9145;Parent=Msa1384590-mRNA-1 |
| tig0020668 | exon | 2333 | 2426 | 2333 | ID=Msa1384590-mRNA-1:exon:9146;Parent=Msa1384590-mRNA-1 |
| tig0020668 | exon | 2730 | 2861 | 2730 | ID=Msa1384590-mRNA-1:exon:9147;Parent=Msa1384590-mRNA-1 |
| tig0020668 | exon | 2936 | 3040 | 2936 | ID=Msa1384590-mRNA-1:exon:9148;Parent=Msa1384590-mRNA-1 |
| tig0020668 | exon | 3184 | 3234 | 3184 | ID=Msa1384590-mRNA-1:exon:9149;Parent=Msa1384590-mRNA-1 |
| tig0020668 | exon | 3314 | 3482 | 3314 | ID=Msa1384590-mRNA-1:exon:9150;Parent=Msa1384590-mRNA-1 |
| tig0020668 | exon | 6612 | 6658 | 6612 | ID=Msa1384590-mRNA-1:exon:9151;Parent=Msa1384590-mRNA-1 |
| tig0020668 | five_prime_UTR | 952 | 1202 | 952 | ID=Msa1384590-mRNA-1:five_prime_utr;Parent=Msa1384590-mRNA-1 |
| tig0020668 | CDS | 1203 | 1355 | 1203 | ID=Msa1384590-mRNA-1:cds;Parent=Msa1384590-mRNA-1 |
| tig0020668 | CDS | 1885 | 1979 | 1885 | ID=Msa1384590-mRNA-1:cds;Parent=Msa1384590-mRNA-1 |
| tig0020668 | CDS | 2333 | 2426 | 2333 | ID=Msa1384590-mRNA-1:cds;Parent=Msa1384590-mRNA-1 |
| tig0020668 | CDS | 2730 | 2861 | 2730 | ID=Msa1384590-mRNA-1:cds;Parent=Msa1384590-mRNA-1 |
| tig0020668 | CDS | 2936 | 3040 | 2936 | ID=Msa1384590-mRNA-1:cds;Parent=Msa1384590-mRNA-1 |
| tig0020668 | CDS | 3184 | 3234 | 3184 | ID=Msa1384590-mRNA-1:cds;Parent=Msa1384590-mRNA-1 |
| tig0020668 | CDS | 3314 | 3482 | 3314 | ID=Msa1384590-mRNA-1:cds;Parent=Msa1384590-mRNA-1 |
| tig0020668 | CDS | 6612 | 6658 | 6612 | ID=Msa1384590-mRNA-1:cds;Parent=Msa1384590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
