AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0779450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779450 MtrunA17_Chr5g0444081 89.655 116 6 1 28 137 19 134 1.56e-68 207
Msa0779450 MtrunA17_Chr3g0098811 73.770 61 16 0 73 133 1 61 3.07e-26 98.2
Msa0779450 MtrunA17_Chr3g0116541 55.556 54 17 1 80 133 7 53 2.38e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779450 AT4G25130.1 49.565 115 50 5 30 137 10 123 2.78e-25 97.4
Msa0779450 AT5G07470.1 67.213 61 20 0 73 133 1 61 1.00e-23 92.0
Msa0779450 AT5G61640.2 62.903 62 23 0 72 133 27 88 1.87e-21 86.7
Msa0779450 AT5G61640.1 62.295 61 23 0 73 133 1 61 4.67e-21 85.1
Msa0779450 AT5G07460.1 64.583 48 15 1 92 137 36 83 3.69e-16 72.4

Find 108 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAGCAGTTTGCTGCTTT+TGG 0.133192 5_2:-60681366 Msa0779450:CDS
GGTAATTTCCTTTAGTAATT+AGG 0.154971 5_2:-60679772 Msa0779450:three_prime_UTR
CAGTATACAACTCTAATTTA+TGG 0.239120 5_2:+60680040 None:intergenic
ATTCTCAAAGGCACATTGTT+TGG 0.290349 5_2:+60681184 None:intergenic
ATTTGTGATTGTTATAGTTT+TGG 0.293399 5_2:-60679749 Msa0779450:three_prime_UTR
CACATTGTTTGGGATCATAT+TGG 0.309800 5_2:+60681195 None:intergenic
GGAAATAGCTAAAGAGTCTT+TGG 0.312998 5_2:-60680302 Msa0779450:three_prime_UTR
ACTGTATTGGAGCTTGAAAA+TGG 0.313276 5_2:-60680069 Msa0779450:three_prime_UTR
CTCAGCCCTGTAGAACTTCT+TGG 0.322376 5_2:+60680228 None:intergenic
CTTCTGAACAAACTTGGATT+TGG 0.322720 5_2:-60681459 Msa0779450:CDS
AGGGCTTGGTTACAGTAAAA+TGG 0.338171 5_2:+60681490 None:intergenic
TGCACACATATTTATTGATT+AGG 0.338899 5_2:-60679793 Msa0779450:three_prime_UTR
TGAGGGTAGGAACTTGGTTT+TGG 0.356279 5_2:+60681563 None:intergenic
AAGTTTGTTCAGAAGGTTCA+TGG 0.357858 5_2:+60681467 None:intergenic
AATTAACCATAGCACCGAAT+TGG 0.359283 5_2:+60680130 None:intergenic
ACTTATGAAGATGTGTGTTC+AGG 0.363577 5_2:-60681248 Msa0779450:exon
TACAACCTCATTGTGGTTTG+TGG 0.365802 5_2:+60681223 None:intergenic
TTCTCAAAGGCACATTGTTT+GGG 0.365969 5_2:+60681185 None:intergenic
CACAGAATCACCCCGCTTGA+TGG 0.374238 5_2:-60679879 Msa0779450:three_prime_UTR
TCGGTATATACCTGTCGATT+TGG 0.374244 5_2:+60681122 None:intergenic
GGAGCTGGACGTGGTGCTAT+AGG 0.378569 5_2:+60681623 None:intergenic
AGAATCTGCTTGATACGTTC+TGG 0.387186 5_2:-60681166 Msa0779450:three_prime_UTR
CTTTCTCAAGGTACTGTTGA+TGG 0.393321 5_2:+60680200 None:intergenic
TTTGGGGCTGGCTGCTTCTG+GGG 0.398460 5_2:-60681348 Msa0779450:CDS
CAGAAGGTTCATGGAGGGCT+TGG 0.402252 5_2:+60681476 None:intergenic
TTAGCTATTTCCTCTTGCTC+AGG 0.417499 5_2:+60680313 None:intergenic
GGAACAACAAGAGAAGCAAT+TGG 0.418797 5_2:-60680281 Msa0779450:three_prime_UTR
CAAACCACAATGAGGTTGTA+AGG 0.423126 5_2:-60681220 Msa0779450:three_prime_UTR
TTAGTCTTCCAGAGGGTGCC+TGG 0.428460 5_2:-60681318 Msa0779450:CDS
CTTGAGAAAGGTGGTCGATT+CGG 0.429559 5_2:-60680187 Msa0779450:three_prime_UTR
AATGTCTCAAAAGGATGATA+TGG 0.435787 5_2:-60679851 Msa0779450:three_prime_UTR
TTCCTGCCAAGAAGTTCTAC+AGG 0.437198 5_2:-60680234 Msa0779450:three_prime_UTR
TACTAACTCCAGGCACCCTC+TGG 0.440966 5_2:+60681310 None:intergenic
ATGAACCTTCTGAACAAACT+TGG 0.442513 5_2:-60681465 Msa0779450:CDS
CTTATGAAGATGTGTGTTCA+GGG 0.443891 5_2:-60681247 Msa0779450:exon
CAAATCCAAGTTTGTTCAGA+AGG 0.446426 5_2:+60681460 None:intergenic
ACAGAATCACCCCGCTTGAT+GGG 0.448695 5_2:-60679878 Msa0779450:three_prime_UTR
GGGCTTGGTTACAGTAAAAT+GGG 0.455190 5_2:+60681491 None:intergenic
CGTGGTGCTATAGGCGCTGC+TGG 0.457191 5_2:+60681632 None:intergenic
ATTAACCATAGCACCGAATT+GGG 0.458836 5_2:+60680131 None:intergenic
ACCTGTCGATTTGGCGTAGT+AGG 0.463222 5_2:+60681131 None:intergenic
GGATCAATACGACACTGTAT+TGG 0.470188 5_2:-60680082 Msa0779450:three_prime_UTR
ATGGGGTTCAATGTCTCAAA+AGG 0.475789 5_2:-60679860 Msa0779450:three_prime_UTR
AAGGATGCAATGACCCAATT+CGG 0.477354 5_2:-60680144 Msa0779450:three_prime_UTR
TAGGATTGTGCAAAAGCCCC+TGG 0.477867 5_2:+60681270 None:intergenic
AGAAAGTGAGGGTAGGAACT+TGG 0.478713 5_2:+60681557 None:intergenic
GAACAACAAGAGAAGCAATT+GGG 0.490289 5_2:-60680280 Msa0779450:three_prime_UTR
CTGTATTGGAGCTTGAAAAT+GGG 0.491083 5_2:-60680068 Msa0779450:three_prime_UTR
CATGGATTCAACCATTCCTC+AGG 0.492517 5_2:-60681415 Msa0779450:CDS
GTGGGAACACAGTACAGATC+TGG 0.492891 5_2:-60680352 Msa0779450:three_prime_UTR
GTGCCTGGAGTTAGTAAGAC+AGG 0.499656 5_2:-60681303 Msa0779450:CDS
GGTGCTGGTATATCGTCATC+TGG 0.500288 5_2:+60681390 None:intergenic
GACATTGAACCCCATCAAGC+GGG 0.506295 5_2:+60679868 None:intergenic
TCCTACTACGCCAAATCGAC+AGG 0.516001 5_2:-60681132 Msa0779450:intron
TTCAAGCAATCTGCTGCTAA+AGG 0.517342 5_2:-60680163 Msa0779450:three_prime_UTR
TGCAAGGTCATCGGAGAGCA+TGG 0.519772 5_2:-60681433 Msa0779450:CDS
ACAGTAAAATGGGGACGGGT+TGG 0.522086 5_2:+60681501 None:intergenic
AAAGCAGCAAACTGCTGACC+TGG 0.522845 5_2:+60681369 None:intergenic
TCACAAATCCTAATTACTAA+AGG 0.527470 5_2:+60679764 None:intergenic
AACAAACACTAGCAAGGAGC+TGG 0.528081 5_2:+60681608 None:intergenic
GAACACACATCTTCATAAGT+AGG 0.536289 5_2:+60681251 None:intergenic
AACTTGGATTTGGCAGTGCA+AGG 0.536639 5_2:-60681449 Msa0779450:CDS
TTGTTGTAAAGTATTTGTCT+TGG 0.538402 5_2:-60679996 Msa0779450:three_prime_UTR
AATGACCCAATTCGGTGCTA+TGG 0.544140 5_2:-60680136 Msa0779450:three_prime_UTR
GGTTACAGTAAAATGGGGAC+GGG 0.546721 5_2:+60681497 None:intergenic
GACAGAAAATCTAGAAAGTG+AGG 0.547056 5_2:+60681545 None:intergenic
AACAAGAGAAGCAATTGGGC+AGG 0.550479 5_2:-60680276 Msa0779450:three_prime_UTR
GCAAACTGCTGACCTGGTGC+TGG 0.552206 5_2:+60681375 None:intergenic
GTCATCTGGTCCCTGAGGAA+TGG 0.556094 5_2:+60681404 None:intergenic
GCCCTGTAGAACTTCTTGGC+AGG 0.556183 5_2:+60680232 None:intergenic
CACTAGCAAGGAGCTGGACG+TGG 0.557263 5_2:+60681614 None:intergenic
ATTTGGCAGTGCAAGGTCAT+CGG 0.557290 5_2:-60681442 Msa0779450:CDS
CAACCTGTCTTACTAACTCC+AGG 0.562139 5_2:+60681300 None:intergenic
ATAATGTGAATTTATCCTCA+AGG 0.573867 5_2:-60680103 Msa0779450:three_prime_UTR
CGTATCAAGCAGATTCTCAA+AGG 0.580362 5_2:+60681172 None:intergenic
CATCAACAGTACCTTGAGAA+AGG 0.580843 5_2:-60680199 Msa0779450:three_prime_UTR
TGGTTACAGTAAAATGGGGA+CGG 0.587074 5_2:+60681496 None:intergenic
CTGGAGTTAGTAAGACAGGT+TGG 0.587524 5_2:-60681299 Msa0779450:CDS
CAAGAAGTTCTACAGGGCTG+AGG 0.588571 5_2:-60680227 Msa0779450:three_prime_UTR
GTGTTGAATTAGTCTTCCAG+AGG 0.595505 5_2:-60681326 Msa0779450:CDS
TTGTTCAGAAGGTTCATGGA+GGG 0.602277 5_2:+60681471 None:intergenic
AGCGGGGTGATTCTGTGAGA+AGG 0.602332 5_2:+60679885 None:intergenic
AGACAGGTTGGTTACACCCA+GGG 0.602996 5_2:-60681287 Msa0779450:CDS
CAGAATCACCCCGCTTGATG+GGG 0.603991 5_2:-60679877 Msa0779450:three_prime_UTR
CGAATCGACCACCTTTCTCA+AGG 0.605526 5_2:+60680188 None:intergenic
AGGATTGTGCAAAAGCCCCT+GGG 0.609672 5_2:+60681271 None:intergenic
AAACCACAATGAGGTTGTAA+GGG 0.613260 5_2:-60681219 Msa0779450:three_prime_UTR
AGACATTGAACCCCATCAAG+CGG 0.615138 5_2:+60679867 None:intergenic
AGAAGAAACAAACACTAGCA+AGG 0.615666 5_2:+60681602 None:intergenic
ACAGAAAATCTAGAAAGTGA+GGG 0.620493 5_2:+60681546 None:intergenic
AAAATCTAGAAAGTGAGGGT+AGG 0.627880 5_2:+60681550 None:intergenic
GGACCCTTACAACCTCATTG+TGG 0.628278 5_2:+60681216 None:intergenic
TGTTGAATTAGTCTTCCAGA+GGG 0.628480 5_2:-60681325 Msa0779450:CDS
GACAGGTTGGTTACACCCAG+GGG 0.636085 5_2:-60681286 Msa0779450:CDS
AAGACAGGTTGGTTACACCC+AGG 0.646151 5_2:-60681288 Msa0779450:CDS
TCCTGCCAAGAAGTTCTACA+GGG 0.646626 5_2:-60680233 Msa0779450:three_prime_UTR
ATGGATTCAACCATTCCTCA+GGG 0.661571 5_2:-60681414 Msa0779450:CDS
CAGTGTCGTATTGATCCTTG+AGG 0.663620 5_2:+60680088 None:intergenic
CAACAGTACCTTGAGAAAGG+TGG 0.667397 5_2:-60680196 Msa0779450:three_prime_UTR
CGGGTTGGTGAAAACAAGCA+AGG 0.672554 5_2:+60681516 None:intergenic
GATGACGATATACCAGCACC+AGG 0.678617 5_2:-60681387 Msa0779450:CDS
TATGTGACAGGGGAATGATG+TGG 0.690238 5_2:-60680371 Msa0779450:intron
ATGTGACAGGGGAATGATGT+GGG 0.696486 5_2:-60680370 Msa0779450:intron
ATATCGTCATCTGGTCCCTG+AGG 0.697908 5_2:+60681399 None:intergenic
TTTGTTCAGAAGGTTCATGG+AGG 0.703199 5_2:+60681470 None:intergenic
GGCTTGGTTACAGTAAAATG+GGG 0.703897 5_2:+60681492 None:intergenic
ACATTGAACCCCATCAAGCG+GGG 0.709266 5_2:+60679869 None:intergenic
AGGGACCACAAACCACAATG+AGG 0.713909 5_2:-60681228 Msa0779450:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAGTGAAAATTGAAA+AGG + chr5_2:60679786-60679805 None:intergenic 15.0%
!!! TATATTGATAATAATAACAG+AGG - chr5_2:60680272-60680291 Msa0779450:three_prime_UTR 15.0%
!! AAATTAGTGTTTAATGATAA+TGG - chr5_2:60680410-60680429 Msa0779450:intron 15.0%
!! AATACTGTTAAAAAACATAA+GGG + chr5_2:60680850-60680869 None:intergenic 15.0%
!! AAATACTGTTAAAAAACATA+AGG + chr5_2:60680851-60680870 None:intergenic 15.0%
!!! TTTTAACAGTATTTTGAAAA+TGG - chr5_2:60680857-60680876 Msa0779450:intron 15.0%
!!! ATGATTATAATTTCTAGATA+AGG - chr5_2:60680909-60680928 Msa0779450:intron 15.0%
!!! TGATTATAATTTCTAGATAA+GGG - chr5_2:60680910-60680929 Msa0779450:intron 15.0%
!! CACTAAAAAAACTAAAAACA+AGG + chr5_2:60679760-60679779 None:intergenic 20.0%
!! TATAAGCTAGACAATATAAA+TGG + chr5_2:60679916-60679935 None:intergenic 20.0%
!!! AAGATTTAGGACTAATTTAA+GGG + chr5_2:60679952-60679971 None:intergenic 20.0%
!!! TAAGATTTAGGACTAATTTA+AGG + chr5_2:60679953-60679972 None:intergenic 20.0%
!! TGGTTTAGTTATTAAGATTT+AGG + chr5_2:60679965-60679984 None:intergenic 20.0%
!! GAATGCATTTATACATAAAA+GGG + chr5_2:60680087-60680106 None:intergenic 20.0%
!! AGAATGCATTTATACATAAA+AGG + chr5_2:60680088-60680107 None:intergenic 20.0%
!!! ACAATTGATAGTATTGATAA+AGG - chr5_2:60680131-60680150 Msa0779450:three_prime_UTR 20.0%
!!! CAATTGATAGTATTGATAAA+GGG - chr5_2:60680132-60680151 Msa0779450:three_prime_UTR 20.0%
!!! TATAGATGGTCTTATATTTA+AGG - chr5_2:60680194-60680213 Msa0779450:three_prime_UTR 20.0%
!!! TTGTAAATGGTCTTATAATT+AGG - chr5_2:60680229-60680248 Msa0779450:three_prime_UTR 20.0%
!!! TGTAAATGGTCTTATAATTA+GGG - chr5_2:60680230-60680249 Msa0779450:three_prime_UTR 20.0%
!!! AACTCTTTTACTTTGATAAT+AGG - chr5_2:60680742-60680761 Msa0779450:intron 20.0%
!! TCAAAAATGAACATTTAAGA+TGG + chr5_2:60680769-60680788 None:intergenic 20.0%
!!! TATTTTTCATTCAGTTTTCT+TGG - chr5_2:60680808-60680827 Msa0779450:intron 20.0%
!! TTATAAACAAACGAACAATT+CGG + chr5_2:60681495-60681514 None:intergenic 20.0%
!! AATTTACTAAAAGAACATGT+TGG + chr5_2:60681839-60681858 None:intergenic 20.0%
!!! ACATGTTCTTTTAGTAAATT+TGG - chr5_2:60681839-60681858 Msa0779450:intron 20.0%
!!! CATGTTCTTTTAGTAAATTT+GGG - chr5_2:60681840-60681859 Msa0779450:intron 20.0%
!!! AGTATAAAACCATTTTGATA+TGG - chr5_2:60681951-60681970 Msa0779450:intron 20.0%
!!! ATTTGTGATTGTTATAGTTT+TGG - chr5_2:60682846-60682865 Msa0779450:intron 20.0%
! GACCATGAATATCATTAATT+AGG - chr5_2:60679816-60679835 Msa0779450:three_prime_UTR 25.0%
! GTAAACTACTCTCATATTAA+GGG + chr5_2:60679994-60680013 None:intergenic 25.0%
! TGTAAACTACTCTCATATTA+AGG + chr5_2:60679995-60680014 None:intergenic 25.0%
! GAGTAGTTTACAAAAATTAC+AGG - chr5_2:60680003-60680022 Msa0779450:three_prime_UTR 25.0%
! ATGCGTTAGAAATTTATAGA+TGG - chr5_2:60680180-60680199 Msa0779450:three_prime_UTR 25.0%
!!! GACAAACACTTTTTTGTAAA+TGG - chr5_2:60680216-60680235 Msa0779450:three_prime_UTR 25.0%
! CTATACATGTATAGAAGAAA+TGG - chr5_2:60680338-60680357 Msa0779450:three_prime_UTR 25.0%
! ATTTCCAATATGAGAATCAA+AGG - chr5_2:60680474-60680493 Msa0779450:intron 25.0%
! ATTTCCTTTGATTCTCATAT+TGG + chr5_2:60680481-60680500 None:intergenic 25.0%
! TATGAGAATCAAAGGAAATA+AGG - chr5_2:60680482-60680501 Msa0779450:intron 25.0%
!! ATTTTCATACCTAAACATCT+AGG - chr5_2:60680570-60680589 Msa0779450:intron 25.0%
! TACAGTATCAACAAACAAAA+GGG + chr5_2:60680721-60680740 None:intergenic 25.0%
! TTACAGTATCAACAAACAAA+AGG + chr5_2:60680722-60680741 None:intergenic 25.0%
! GCTATCAAAATGATTAACAT+TGG + chr5_2:60681700-60681719 None:intergenic 25.0%
! TAGATTACTCCATATCAAAA+TGG + chr5_2:60681963-60681982 None:intergenic 25.0%
! TTGAACAGAAAAGAAACAAA+GGG + chr5_2:60682013-60682032 None:intergenic 25.0%
! ATAATGTGAATTTATCCTCA+AGG - chr5_2:60682492-60682511 Msa0779450:intron 25.0%
! CAGTATACAACTCTAATTTA+TGG + chr5_2:60682558-60682577 None:intergenic 25.0%
!! TTGTTGTAAAGTATTTGTCT+TGG - chr5_2:60682599-60682618 Msa0779450:intron 25.0%
!! TGCACACATATTTATTGATT+AGG - chr5_2:60682802-60682821 Msa0779450:intron 25.0%
! GGTAATTTCCTTTAGTAATT+AGG - chr5_2:60682823-60682842 Msa0779450:intron 25.0%
! TCACAAATCCTAATTACTAA+AGG + chr5_2:60682834-60682853 None:intergenic 25.0%
GGCCTAATTAATGATATTCA+TGG + chr5_2:60679821-60679840 None:intergenic 30.0%
TATTGTATCAATATGACAGC+AGG + chr5_2:60679842-60679861 None:intergenic 30.0%
! TCTCATATTAAGGGAGTATA+TGG + chr5_2:60679985-60680004 None:intergenic 30.0%
! GTATTGATAAAGGGTATAGT+TGG - chr5_2:60680141-60680160 Msa0779450:three_prime_UTR 30.0%
!! AATGGTCTTATAATTAGGGA+AGG - chr5_2:60680234-60680253 Msa0779450:three_prime_UTR 30.0%
ACTAAGTAAGTACATGATAC+TGG + chr5_2:60680644-60680663 None:intergenic 30.0%
!! AATGGCTCTTATGTTTTTGA+AGG - chr5_2:60680875-60680894 Msa0779450:intron 30.0%
!! ATGGCTCTTATGTTTTTGAA+GGG - chr5_2:60680876-60680895 Msa0779450:intron 30.0%
ACAGAAAATCTAGAAAGTGA+GGG + chr5_2:60681052-60681071 None:intergenic 30.0%
GAATAATAAGTCTAGACTTG+TGG - chr5_2:60681602-60681621 Msa0779450:CDS 30.0%
!! ACAAGACAATCATTTTTCCT+GGG + chr5_2:60681878-60681897 None:intergenic 30.0%
ACAAGACAAAATGTTAGGTA+AGG + chr5_2:60681990-60682009 None:intergenic 30.0%
CTTGAACAGAAAAGAAACAA+AGG + chr5_2:60682014-60682033 None:intergenic 30.0%
! ATGTCTTTTCAGAAATTAGC+AGG - chr5_2:60682651-60682670 Msa0779450:intron 30.0%
AATGTCTCAAAAGGATGATA+TGG - chr5_2:60682744-60682763 Msa0779450:intron 30.0%
!!! TTCTTCATCTACTTTTTTGC+TGG - chr5_2:60682770-60682789 Msa0779450:intron 30.0%
GTCTTATAATTAGGGAAGGA+GGG - chr5_2:60680238-60680257 Msa0779450:three_prime_UTR 35.0%
!!! ATGAGCCTCTGTTTTTTGAA+CGG + chr5_2:60680300-60680319 None:intergenic 35.0%
GCAACTCATAGTTCATGTTT+AGG - chr5_2:60680444-60680463 Msa0779450:intron 35.0%
ACTCATAGTTCATGTTTAGG+AGG - chr5_2:60680447-60680466 Msa0779450:intron 35.0%
CTCATAGTTCATGTTTAGGA+GGG - chr5_2:60680448-60680467 Msa0779450:intron 35.0%
AGGAATGAACATGCATGATT+AGG - chr5_2:60680502-60680521 Msa0779450:intron 35.0%
GGAATGAACATGCATGATTA+GGG - chr5_2:60680503-60680522 Msa0779450:intron 35.0%
GAATGAACATGCATGATTAG+GGG - chr5_2:60680504-60680523 Msa0779450:intron 35.0%
CAATTCTTGCCTAGATGTTT+AGG + chr5_2:60680582-60680601 None:intergenic 35.0%
AGAAGAAACAAACACTAGCA+AGG + chr5_2:60680996-60681015 None:intergenic 35.0%
AAAATCTAGAAAGTGAGGGT+AGG + chr5_2:60681048-60681067 None:intergenic 35.0%
GACAGAAAATCTAGAAAGTG+AGG + chr5_2:60681053-60681072 None:intergenic 35.0%
! AAGTTTGTTCAGAAGGTTCA+TGG + chr5_2:60681131-60681150 None:intergenic 35.0%
ATGAACCTTCTGAACAAACT+TGG - chr5_2:60681130-60681149 Msa0779450:intron 35.0%
! CAAATCCAAGTTTGTTCAGA+AGG + chr5_2:60681138-60681157 None:intergenic 35.0%
CTTCTGAACAAACTTGGATT+TGG - chr5_2:60681136-60681155 Msa0779450:three_prime_UTR 35.0%
!! TGTTGAATTAGTCTTCCAGA+GGG - chr5_2:60681270-60681289 Msa0779450:CDS 35.0%
GAACACACATCTTCATAAGT+AGG + chr5_2:60681347-60681366 None:intergenic 35.0%
ACTTATGAAGATGTGTGTTC+AGG - chr5_2:60681347-60681366 Msa0779450:CDS 35.0%
CTTATGAAGATGTGTGTTCA+GGG - chr5_2:60681348-60681367 Msa0779450:CDS 35.0%
AAACCACAATGAGGTTGTAA+GGG - chr5_2:60681376-60681395 Msa0779450:CDS 35.0%
! CACATTGTTTGGGATCATAT+TGG + chr5_2:60681403-60681422 None:intergenic 35.0%
! TTCTCAAAGGCACATTGTTT+GGG + chr5_2:60681413-60681432 None:intergenic 35.0%
! ATTCTCAAAGGCACATTGTT+TGG + chr5_2:60681414-60681433 None:intergenic 35.0%
!!! GAGTTCTTTTTTGTCTCAAG+TGG - chr5_2:60681557-60681576 Msa0779450:CDS 35.0%
TTATTCAGATCAGCAAAGTC+AGG + chr5_2:60681588-60681607 None:intergenic 35.0%
! TTGTGGATTGTCAACATTGA+TGG - chr5_2:60681619-60681638 Msa0779450:CDS 35.0%
!! GACAAGACAATCATTTTTCC+TGG + chr5_2:60681879-60681898 None:intergenic 35.0%
AAGGGACAAGACAAAATGTT+AGG + chr5_2:60681995-60682014 None:intergenic 35.0%
! TTCTTTTCTGTTCAAGACTG+TGG - chr5_2:60682018-60682037 Msa0779450:intron 35.0%
TGATTTCCACTTTCCATGAA+TGG - chr5_2:60682167-60682186 Msa0779450:intron 35.0%
TACTAAGCTCTTACCATTCA+TGG + chr5_2:60682183-60682202 None:intergenic 35.0%
AGCTTAGTAATTGTGACATC+TGG - chr5_2:60682194-60682213 Msa0779450:intron 35.0%
GGAAATAGCTAAAGAGTCTT+TGG - chr5_2:60682293-60682312 Msa0779450:intron 35.0%
GAACAACAAGAGAAGCAATT+GGG - chr5_2:60682315-60682334 Msa0779450:intron 35.0%
! ATTAACCATAGCACCGAATT+GGG + chr5_2:60682467-60682486 None:intergenic 35.0%
! AATTAACCATAGCACCGAAT+TGG + chr5_2:60682468-60682487 None:intergenic 35.0%
ACTGTATTGGAGCTTGAAAA+TGG - chr5_2:60682526-60682545 Msa0779450:intron 35.0%
CTGTATTGGAGCTTGAAAAT+GGG - chr5_2:60682527-60682546 Msa0779450:intron 35.0%
! GGTCTTATAATTAGGGAAGG+AGG - chr5_2:60680237-60680256 Msa0779450:three_prime_UTR 40.0%
AGAAACAGCAAAACCTCGAA+AGG + chr5_2:60680682-60680701 None:intergenic 40.0%
TGGTTACAGTAAAATGGGGA+CGG + chr5_2:60681102-60681121 None:intergenic 40.0%
! GGCTTGGTTACAGTAAAATG+GGG + chr5_2:60681106-60681125 None:intergenic 40.0%
! GGGCTTGGTTACAGTAAAAT+GGG + chr5_2:60681107-60681126 None:intergenic 40.0%
! AGGGCTTGGTTACAGTAAAA+TGG + chr5_2:60681108-60681127 None:intergenic 40.0%
TTGTTCAGAAGGTTCATGGA+GGG + chr5_2:60681127-60681146 None:intergenic 40.0%
TTTGTTCAGAAGGTTCATGG+AGG + chr5_2:60681128-60681147 None:intergenic 40.0%
ATGGATTCAACCATTCCTCA+GGG - chr5_2:60681181-60681200 Msa0779450:three_prime_UTR 40.0%
!! GTGTTGAATTAGTCTTCCAG+AGG - chr5_2:60681269-60681288 Msa0779450:CDS 40.0%
TACAACCTCATTGTGGTTTG+TGG + chr5_2:60681375-60681394 None:intergenic 40.0%
CAAACCACAATGAGGTTGTA+AGG - chr5_2:60681375-60681394 Msa0779450:CDS 40.0%
CGTATCAAGCAGATTCTCAA+AGG + chr5_2:60681426-60681445 None:intergenic 40.0%
AGAATCTGCTTGATACGTTC+TGG - chr5_2:60681429-60681448 Msa0779450:CDS 40.0%
! TCGGTATATACCTGTCGATT+TGG + chr5_2:60681476-60681495 None:intergenic 40.0%
ACTCACAATTCGCAAACAAG+AGG + chr5_2:60681541-60681560 None:intergenic 40.0%
TTGGGTCAAATCAAATTCCC+AGG - chr5_2:60681858-60681877 Msa0779450:intron 40.0%
TCTTGTCACTGAGTATGTGA+TGG - chr5_2:60681892-60681911 Msa0779450:intron 40.0%
CTCTTACCATTCATGGAAAG+TGG + chr5_2:60682176-60682195 None:intergenic 40.0%
TCTGGATCTTTGTATGTGAC+AGG - chr5_2:60682212-60682231 Msa0779450:intron 40.0%
CTGGATCTTTGTATGTGACA+GGG - chr5_2:60682213-60682232 Msa0779450:intron 40.0%
TGGATCTTTGTATGTGACAG+GGG - chr5_2:60682214-60682233 Msa0779450:intron 40.0%
! TTAGCTATTTCCTCTTGCTC+AGG + chr5_2:60682285-60682304 None:intergenic 40.0%
GGAACAACAAGAGAAGCAAT+TGG - chr5_2:60682314-60682333 Msa0779450:intron 40.0%
!! CTTTCTCAAGGTACTGTTGA+TGG + chr5_2:60682398-60682417 None:intergenic 40.0%
CATCAACAGTACCTTGAGAA+AGG - chr5_2:60682396-60682415 Msa0779450:intron 40.0%
TTCAAGCAATCTGCTGCTAA+AGG - chr5_2:60682432-60682451 Msa0779450:intron 40.0%
AAGGATGCAATGACCCAATT+CGG - chr5_2:60682451-60682470 Msa0779450:intron 40.0%
GGATCAATACGACACTGTAT+TGG - chr5_2:60682513-60682532 Msa0779450:intron 40.0%
ATGGGGTTCAATGTCTCAAA+AGG - chr5_2:60682735-60682754 Msa0779450:intron 40.0%
AGGCTCCGTTCAAAAAACAG+AGG - chr5_2:60680292-60680311 Msa0779450:three_prime_UTR 45.0%
AGCAAAACCTCGAAAGGACT+CGG + chr5_2:60680676-60680695 None:intergenic 45.0%
! GTTTTCTTGGCATCCCAACT+TGG - chr5_2:60680821-60680840 Msa0779450:intron 45.0%
AACATAAGGGCCACCAAGTT+GGG + chr5_2:60680837-60680856 None:intergenic 45.0%
AAACATAAGGGCCACCAAGT+TGG + chr5_2:60680838-60680857 None:intergenic 45.0%
AACAAACACTAGCAAGGAGC+TGG + chr5_2:60680990-60681009 None:intergenic 45.0%
! TGAGGGTAGGAACTTGGTTT+TGG + chr5_2:60681035-60681054 None:intergenic 45.0%
AGAAAGTGAGGGTAGGAACT+TGG + chr5_2:60681041-60681060 None:intergenic 45.0%
GGTTACAGTAAAATGGGGAC+GGG + chr5_2:60681101-60681120 None:intergenic 45.0%
AACTTGGATTTGGCAGTGCA+AGG - chr5_2:60681146-60681165 Msa0779450:three_prime_UTR 45.0%
ATTTGGCAGTGCAAGGTCAT+CGG - chr5_2:60681153-60681172 Msa0779450:three_prime_UTR 45.0%
CATGGATTCAACCATTCCTC+AGG - chr5_2:60681180-60681199 Msa0779450:three_prime_UTR 45.0%
!!! GTCAGCAGTTTGCTGCTTTT+GGG - chr5_2:60681230-60681249 Msa0779450:three_prime_UTR 45.0%
!!! TCAGCAGTTTGCTGCTTTTG+GGG - chr5_2:60681231-60681250 Msa0779450:three_prime_UTR 45.0%
CAACCTGTCTTACTAACTCC+AGG + chr5_2:60681298-60681317 None:intergenic 45.0%
CTGGAGTTAGTAAGACAGGT+TGG - chr5_2:60681296-60681315 Msa0779450:CDS 45.0%
TATGTGACAGGGGAATGATG+TGG - chr5_2:60682224-60682243 Msa0779450:intron 45.0%
ATGTGACAGGGGAATGATGT+GGG - chr5_2:60682225-60682244 Msa0779450:intron 45.0%
! CTTTTACACTCCTGAGCAAG+AGG - chr5_2:60682272-60682291 Msa0779450:intron 45.0%
AACAAGAGAAGCAATTGGGC+AGG - chr5_2:60682319-60682338 Msa0779450:intron 45.0%
TTCCTGCCAAGAAGTTCTAC+AGG - chr5_2:60682361-60682380 Msa0779450:intron 45.0%
TCCTGCCAAGAAGTTCTACA+GGG - chr5_2:60682362-60682381 Msa0779450:intron 45.0%
CAACAGTACCTTGAGAAAGG+TGG - chr5_2:60682399-60682418 Msa0779450:intron 45.0%
CTTGAGAAAGGTGGTCGATT+CGG - chr5_2:60682408-60682427 Msa0779450:intron 45.0%
!! AATGACCCAATTCGGTGCTA+TGG - chr5_2:60682459-60682478 Msa0779450:intron 45.0%
! CAGTGTCGTATTGATCCTTG+AGG + chr5_2:60682510-60682529 None:intergenic 45.0%
AGACATTGAACCCCATCAAG+CGG + chr5_2:60682731-60682750 None:intergenic 45.0%
TTGATTCCCGAGTCCTTTCG+AGG - chr5_2:60680666-60680685 Msa0779450:intron 50.0%
GCAAAACCTCGAAAGGACTC+GGG + chr5_2:60680675-60680694 None:intergenic 50.0%
TTCTTGGCATCCCAACTTGG+TGG - chr5_2:60680824-60680843 Msa0779450:intron 50.0%
!!! GAACTTGGTTTTGGCAGGAG+TGG + chr5_2:60681026-60681045 None:intergenic 50.0%
!!! GGTAGGAACTTGGTTTTGGC+AGG + chr5_2:60681031-60681050 None:intergenic 50.0%
!! CGGGTTGGTGAAAACAAGCA+AGG + chr5_2:60681082-60681101 None:intergenic 50.0%
ACAGTAAAATGGGGACGGGT+TGG + chr5_2:60681097-60681116 None:intergenic 50.0%
ATATCGTCATCTGGTCCCTG+AGG + chr5_2:60681199-60681218 None:intergenic 50.0%
!! GGTGCTGGTATATCGTCATC+TGG + chr5_2:60681208-60681227 None:intergenic 50.0%
GATGACGATATACCAGCACC+AGG - chr5_2:60681208-60681227 Msa0779450:three_prime_UTR 50.0%
AAAGCAGCAAACTGCTGACC+TGG + chr5_2:60681229-60681248 None:intergenic 50.0%
!!! GGTCAGCAGTTTGCTGCTTT+TGG - chr5_2:60681229-60681248 Msa0779450:three_prime_UTR 50.0%
GTGCCTGGAGTTAGTAAGAC+AGG - chr5_2:60681292-60681311 Msa0779450:CDS 50.0%
!! AAGACAGGTTGGTTACACCC+AGG - chr5_2:60681307-60681326 Msa0779450:CDS 50.0%
!! AGACAGGTTGGTTACACCCA+GGG - chr5_2:60681308-60681327 Msa0779450:CDS 50.0%
AGGATTGTGCAAAAGCCCCT+GGG + chr5_2:60681327-60681346 None:intergenic 50.0%
TAGGATTGTGCAAAAGCCCC+TGG + chr5_2:60681328-60681347 None:intergenic 50.0%
AGGGACCACAAACCACAATG+AGG - chr5_2:60681367-60681386 Msa0779450:CDS 50.0%
GGACCCTTACAACCTCATTG+TGG + chr5_2:60681382-60681401 None:intergenic 50.0%
TCCTACTACGCCAAATCGAC+AGG - chr5_2:60681463-60681482 Msa0779450:CDS 50.0%
!! ACCTGTCGATTTGGCGTAGT+AGG + chr5_2:60681467-60681486 None:intergenic 50.0%
GTGGGAACACAGTACAGATC+TGG - chr5_2:60682243-60682262 Msa0779450:intron 50.0%
CTCAGCCCTGTAGAACTTCT+TGG + chr5_2:60682370-60682389 None:intergenic 50.0%
CAAGAAGTTCTACAGGGCTG+AGG - chr5_2:60682368-60682387 Msa0779450:intron 50.0%
CGAATCGACCACCTTTCTCA+AGG + chr5_2:60682410-60682429 None:intergenic 50.0%
ACAGAATCACCCCGCTTGAT+GGG - chr5_2:60682717-60682736 Msa0779450:intron 50.0%
ACATTGAACCCCATCAAGCG+GGG + chr5_2:60682729-60682748 None:intergenic 50.0%
GACATTGAACCCCATCAAGC+GGG + chr5_2:60682730-60682749 None:intergenic 50.0%
!! GGTTTTGGCAGGAGTGGAGA+AGG + chr5_2:60681020-60681039 None:intergenic 55.0%
CAGAAGGTTCATGGAGGGCT+TGG + chr5_2:60681122-60681141 None:intergenic 55.0%
TGCAAGGTCATCGGAGAGCA+TGG - chr5_2:60681162-60681181 Msa0779450:three_prime_UTR 55.0%
GTCATCTGGTCCCTGAGGAA+TGG + chr5_2:60681194-60681213 None:intergenic 55.0%
!!! CAGTTTGCTGCTTTTGGGGC+TGG - chr5_2:60681235-60681254 Msa0779450:three_prime_UTR 55.0%
!!! TTTTGGGGCTGGCTGCTTCT+GGG - chr5_2:60681246-60681265 Msa0779450:exon 55.0%
!! TTAGTCTTCCAGAGGGTGCC+TGG - chr5_2:60681277-60681296 Msa0779450:CDS 55.0%
TACTAACTCCAGGCACCCTC+TGG + chr5_2:60681288-60681307 None:intergenic 55.0%
!! GACAGGTTGGTTACACCCAG+GGG - chr5_2:60681309-60681328 Msa0779450:CDS 55.0%
GCCCTGTAGAACTTCTTGGC+AGG + chr5_2:60682366-60682385 None:intergenic 55.0%
AGCGGGGTGATTCTGTGAGA+AGG + chr5_2:60682713-60682732 None:intergenic 55.0%
CACAGAATCACCCCGCTTGA+TGG - chr5_2:60682716-60682735 Msa0779450:intron 55.0%
CAGAATCACCCCGCTTGATG+GGG - chr5_2:60682718-60682737 Msa0779450:intron 55.0%
!! GGAGCTGGACGTGGTGCTAT+AGG + chr5_2:60680975-60680994 None:intergenic 60.0%
CACTAGCAAGGAGCTGGACG+TGG + chr5_2:60680984-60681003 None:intergenic 60.0%
GCAAACTGCTGACCTGGTGC+TGG + chr5_2:60681223-60681242 None:intergenic 60.0%
!!! CTTTTGGGGCTGGCTGCTTC+TGG - chr5_2:60681245-60681264 Msa0779450:exon 60.0%
!! TTTGGGGCTGGCTGCTTCTG+GGG - chr5_2:60681247-60681266 Msa0779450:exon 60.0%
!! CGTGGTGCTATAGGCGCTGC+TGG + chr5_2:60680966-60680985 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 60679747 60682870 60679747 ID=Msa0779450;Name=Msa0779450
chr5_2 mRNA 60679747 60682870 60679747 ID=Msa0779450-mRNA-1;Parent=Msa0779450;Name=Msa0779450-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.33|0.5|1|0.33|0.25|4|767|146
chr5_2 exon 60679747 60680383 60679747 ID=Msa0779450-mRNA-1:exon:17842;Parent=Msa0779450-mRNA-1
chr5_2 exon 60681133 60681691 60681133 ID=Msa0779450-mRNA-1:exon:17841;Parent=Msa0779450-mRNA-1
chr5_2 exon 60681967 60681972 60681967 ID=Msa0779450-mRNA-1:exon:17840;Parent=Msa0779450-mRNA-1
chr5_2 exon 60682865 60682870 60682865 ID=Msa0779450-mRNA-1:exon:17839;Parent=Msa0779450-mRNA-1
chr5_2 CDS 60682865 60682870 60682865 ID=Msa0779450-mRNA-1:cds;Parent=Msa0779450-mRNA-1
chr5_2 CDS 60681967 60681972 60681967 ID=Msa0779450-mRNA-1:cds;Parent=Msa0779450-mRNA-1
chr5_2 CDS 60681263 60681691 60681263 ID=Msa0779450-mRNA-1:cds;Parent=Msa0779450-mRNA-1
chr5_2 three_prime_UTR 60681133 60681262 60681133 ID=Msa0779450-mRNA-1:three_prime_utr;Parent=Msa0779450-mRNA-1
chr5_2 three_prime_UTR 60679747 60680383 60679747 ID=Msa0779450-mRNA-1:three_prime_utr;Parent=Msa0779450-mRNA-1
Gene Sequence

>Msa0779450

TATCATTATCATATAAGGGTTCTCATCTTACTCAAAATCTTAGCAGCAGCCAGCAGCGCCTATAGCACCACGTCCAGCTCCTTGCTAGTGTTTGTTTCTTCTTCCTTCTCCACTCCTGCCAAAACCAAGTTCCTACCCTCACTTTCTAGATTTTCTGTCAAGCGTCCTTGCTTGTTTTCACCAACCCGTCCCCATTTTACTGTAACCAAGCCCTCCATGAACCTTCTGAACAAACTTGGATTTGGCAGTGCAAGGTCATCGGAGAGCATGGATTCAACCATTCCTCAGGGACCAGATGACGATATACCAGCACCAGGTCAGCAGTTTGCTGCTTTTGGGGCTGGCTGCTTCTGGGGTGTTGAATTAGTCTTCCAGAGGGTGCCTGGAGTTAGTAAGACAGGTTGGTTACACCCAGGGGCTTTTGCACAATCCTACTTATGA

Protein sequence

>Msa0779450

YHYHIRVLILLKILAAASSAYSTTSSSLLVFVSSSFSTPAKTKFLPSLSRFSVKRPCLFSPTRPHFTVTKPSMNLLNKLGFGSARSSESMDSTIPQGPDDDIPAPGQQFAAFGAGCFWGVELVFQRVPGVSKTGWLHPGAFAQSYL*