AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386970 MtrunA17_Chr3g0128771 95.758 165 7 0 13 177 13 177 9.30e-119 333
Msa1386970 MtrunA17_Chr7g0244851 58.861 158 58 3 8 165 3 153 1.20e-61 189
Msa1386970 MtrunA17_Chr3g0129671 48.148 162 79 3 9 166 23 183 8.57e-45 147
Msa1386970 MtrunA17_Chr8g0383861 45.251 179 80 4 5 166 10 187 7.59e-43 142
Msa1386970 MtrunA17_Chr8g0383941 53.435 131 57 2 36 166 55 181 7.38e-42 139
Msa1386970 MtrunA17_Chr8g0383871 42.077 183 98 4 1 176 15 196 1.86e-40 136
Msa1386970 MtrunA17_Chr8g0383921 42.857 175 97 2 4 176 22 195 2.92e-39 132
Msa1386970 MtrunA17_Chr8g0383881 48.872 133 65 2 36 166 46 177 7.29e-39 132
Msa1386970 MtrunA17_Chr8g0383901 44.565 184 85 4 5 176 10 188 5.23e-37 127
Msa1386970 MtrunA17_Chr5g0407431 43.396 159 79 2 6 164 3 150 1.25e-35 123
Msa1386970 MtrunA17_Chr2g0297011 42.400 125 70 1 40 164 25 147 4.25e-35 120
Msa1386970 MtrunA17_Chr8g0370171 48.062 129 62 2 35 161 15 140 1.54e-34 120
Msa1386970 MtrunA17_Chr4g0052671 43.333 120 68 0 43 162 30 149 8.47e-34 117
Msa1386970 MtrunA17_Chr3g0144241 49.231 130 56 4 41 165 26 150 7.63e-32 113
Msa1386970 MtrunA17_Chr8g0383931 47.887 142 68 2 40 176 58 198 7.13e-30 109
Msa1386970 MtrunA17_Chr5g0437361 49.398 83 39 1 89 168 73 155 3.43e-25 95.5
Msa1386970 MtrunA17_Chr2g0307411 36.090 133 72 2 33 165 27 146 4.37e-22 88.2
Msa1386970 MtrunA17_Chr8g0366561 38.889 144 77 4 32 164 44 187 6.94e-22 90.5
Msa1386970 MtrunA17_Chr3g0132491 34.752 141 86 5 40 176 55 193 4.30e-21 88.6
Msa1386970 MtrunA17_Chr7g0274741 43.478 92 47 3 88 175 67 157 5.18e-21 85.1
Msa1386970 MtrunA17_Chr4g0067591 45.455 88 44 1 89 176 78 161 9.81e-21 86.3
Msa1386970 MtrunA17_Chr5g0411081 41.304 92 52 1 86 177 117 206 1.29e-20 87.4
Msa1386970 MtrunA17_Chr5g0413841 35.211 142 67 5 45 164 49 187 1.72e-20 87.0
Msa1386970 MtrunA17_Chr4g0030831 41.463 82 48 0 80 161 73 154 1.78e-20 83.6
Msa1386970 MtrunA17_Chr3g0113811 32.117 137 89 2 37 169 20 156 1.86e-20 83.6
Msa1386970 MtrunA17_Chr3g0105441 41.935 93 52 1 77 167 88 180 3.56e-20 84.7
Msa1386970 MtrunA17_Chr7g0273051 35.211 142 83 5 34 168 30 169 3.79e-20 85.9
Msa1386970 MtrunA17_Chr7g0276591 47.945 73 35 1 92 164 77 146 1.08e-19 84.0
Msa1386970 MtrunA17_Chr3g0123631 35.000 120 75 2 48 164 1 120 1.34e-19 81.6
Msa1386970 MtrunA17_Chr2g0279431 41.573 89 50 1 81 169 125 211 1.50e-19 84.3
Msa1386970 MtrunA17_Chr5g0409211 31.250 144 90 4 36 172 6 147 3.41e-19 80.1
Msa1386970 MtrunA17_Chr8g0381731 41.860 86 48 1 81 166 138 221 3.47e-19 82.4
Msa1386970 MtrunA17_Chr3g0123641 35.000 120 75 2 48 164 1 120 3.66e-19 81.3
Msa1386970 MtrunA17_Chr1g0191601 35.156 128 75 3 47 168 51 176 3.83e-19 83.2
Msa1386970 MtrunA17_Chr6g0486651 34.228 149 84 5 38 177 35 178 4.23e-19 83.2
Msa1386970 MtrunA17_Chr4g0073141 36.552 145 68 5 45 177 72 204 5.41e-19 83.6
Msa1386970 MtrunA17_Chr5g0426781 36.607 112 62 2 61 165 91 200 6.24e-19 82.4
Msa1386970 MtrunA17_Chr1g0167811 27.273 154 98 4 25 164 15 168 7.47e-19 82.0
Msa1386970 MtrunA17_Chr2g0327791 47.143 70 37 0 92 161 108 177 1.11e-18 79.7
Msa1386970 MtrunA17_Chr4g0050041 40.909 88 50 1 81 168 116 201 1.15e-18 81.6
Msa1386970 MtrunA17_Chr7g0269491 40.000 95 55 1 67 161 44 136 1.90e-18 78.6
Msa1386970 MtrunA17_Chr8g0345361 45.833 72 36 1 91 162 92 160 4.22e-18 79.0
Msa1386970 MtrunA17_Chr1g0203541 42.500 80 43 1 88 164 102 181 5.75e-18 77.8
Msa1386970 MtrunA17_Chr4g0059281 32.215 149 81 4 33 164 32 177 7.86e-18 79.0
Msa1386970 MtrunA17_Chr2g0295571 34.959 123 73 3 44 161 41 161 9.41e-18 78.6
Msa1386970 MtrunA17_Chr5g0444161 41.333 75 44 0 87 161 153 227 1.58e-17 77.0
Msa1386970 MtrunA17_Chr5g0444141 37.647 85 53 0 86 170 187 271 1.74e-17 77.4
Msa1386970 MtrunA17_Chr8g0364881 40.217 92 51 2 77 167 54 142 1.87e-17 78.2
Msa1386970 MtrunA17_Chr1g0186661 40.244 82 45 1 87 164 95 176 4.42e-17 77.4
Msa1386970 MtrunA17_Chr5g0406031 45.455 77 42 0 88 164 158 234 5.03e-17 75.9
Msa1386970 MtrunA17_Chr1g0184631 41.026 78 45 1 88 164 65 142 1.01e-16 73.9
Msa1386970 MtrunA17_Chr5g0426881 33.099 142 87 6 39 174 59 198 1.07e-16 76.6
Msa1386970 MtrunA17_Chr6g0470751 40.230 87 49 2 89 174 95 179 1.19e-16 75.9
Msa1386970 MtrunA17_Chr8g0371291 45.946 74 34 1 91 164 158 225 1.23e-16 74.3
Msa1386970 MtrunA17_Chr7g0274711 41.026 78 45 1 88 164 64 141 1.32e-16 73.6
Msa1386970 MtrunA17_Chr3g0126931 42.222 90 43 2 76 165 93 173 1.43e-16 75.9
Msa1386970 MtrunA17_Chr5g0426871 40.741 81 47 1 89 168 106 186 1.52e-16 76.3
Msa1386970 MtrunA17_Chr1g0184171 39.744 78 46 1 87 164 99 175 1.55e-16 75.9
Msa1386970 MtrunA17_Chr3g0133001 43.662 71 38 1 91 161 130 198 1.64e-16 76.3
Msa1386970 MtrunA17_Chr5g0409201 32.143 140 85 3 36 168 6 142 1.95e-16 72.4
Msa1386970 MtrunA17_Chr3g0118061 43.243 74 42 0 91 164 76 149 2.06e-16 73.9
Msa1386970 MtrunA17_Chr4g0013561 39.535 86 47 2 91 176 85 165 2.43e-16 73.6
Msa1386970 MtrunA17_Chr1g0198201 32.031 128 70 3 44 167 22 136 2.48e-16 73.6
Msa1386970 MtrunA17_Chr6g0451161 32.847 137 72 4 45 164 71 204 3.18e-16 75.1
Msa1386970 MtrunA17_Chr3g0143301 33.051 118 70 4 50 164 5 116 5.52e-16 70.5
Msa1386970 MtrunA17_Chr7g0274721 43.243 74 39 1 88 161 65 135 8.89e-16 71.2
Msa1386970 MtrunA17_Chr1g0177041 37.113 97 60 1 82 177 65 161 1.23e-15 70.9
Msa1386970 MtrunA17_Chr3g0118071 29.496 139 82 3 40 164 13 149 1.82e-15 71.2
Msa1386970 MtrunA17_Chr5g0430781 43.373 83 42 1 90 172 86 163 1.99e-15 71.2
Msa1386970 MtrunA17_Chr5g0427431 38.462 78 46 1 84 161 127 202 2.09e-15 72.8
Msa1386970 MtrunA17_Chr7g0246761 30.894 123 78 4 42 164 20 135 2.93e-15 70.1
Msa1386970 MtrunA17_Chr8g0369571 60.465 43 17 0 119 161 90 132 2.94e-15 70.1
Msa1386970 MtrunA17_Chr3g0126611 41.333 75 44 0 89 163 301 375 5.81e-15 71.6
Msa1386970 MtrunA17_Chr4g0010171 35.000 120 67 3 45 164 50 158 6.31e-15 69.3
Msa1386970 MtrunA17_Chr8g0336881 37.634 93 55 2 86 177 71 161 7.61e-15 70.9
Msa1386970 MtrunA17_Chr6g0451051 43.056 72 39 1 90 161 39 108 9.64e-15 68.2
Msa1386970 MtrunA17_Chr4g0027761 41.667 72 37 1 90 161 99 165 1.01e-14 68.9
Msa1386970 MtrunA17_Chr7g0261091 28.788 132 83 4 44 164 14 145 1.12e-14 70.5
Msa1386970 MtrunA17_Chr4g0060981 34.409 93 58 1 72 164 130 219 1.74e-14 68.6
Msa1386970 MtrunA17_Chr7g0248831 34.444 90 59 0 88 177 77 166 1.97e-14 67.8
Msa1386970 MtrunA17_Chr6g0451031 36.667 90 54 1 72 161 25 111 2.33e-14 66.2
Msa1386970 MtrunA17_Chr2g0325141 49.057 53 27 0 109 161 81 133 2.43e-14 66.6
Msa1386970 MtrunA17_Chr7g0237871 53.191 47 22 0 118 164 157 203 4.30e-14 67.8
Msa1386970 MtrunA17_Chr2g0325161 34.066 91 56 1 84 170 84 174 5.07e-14 67.8
Msa1386970 MtrunA17_Chr7g0274731 41.892 74 40 1 88 161 86 156 5.56e-14 66.6
Msa1386970 MtrunA17_Chr8g0388231 38.961 77 47 0 91 167 309 385 6.59e-14 68.6
Msa1386970 MtrunA17_Chr8g0350741 30.894 123 77 3 42 164 20 134 7.57e-14 66.2
Msa1386970 MtrunA17_Chr8g0388201 38.889 72 44 0 91 162 319 390 1.15e-13 67.8
Msa1386970 MtrunA17_Chr8g0348151 36.364 99 55 2 74 170 73 165 2.01e-13 65.5
Msa1386970 MtrunA17_Chr5g0396611 38.889 72 44 0 91 162 312 383 2.64e-13 67.0
Msa1386970 MtrunA17_Chr1g0197011 32.000 150 86 6 26 163 6 151 2.88e-13 63.9
Msa1386970 MtrunA17_Chr5g0433861 31.646 158 95 4 25 170 1 157 3.27e-13 66.2
Msa1386970 MtrunA17_Chr1g0157091 30.579 121 76 3 47 164 1 116 4.03e-13 63.2
Msa1386970 MtrunA17_Chr8g0343571 38.571 70 43 0 104 173 70 139 6.27e-13 63.5
Msa1386970 MtrunA17_Chr8g0345401 36.486 74 44 1 94 164 21 94 7.52e-13 62.8
Msa1386970 MtrunA17_Chr3g0117821 30.328 122 76 3 44 161 11 127 8.40e-13 62.8
Msa1386970 MtrunA17_Chr2g0300331 56.818 44 19 0 118 161 168 211 8.45e-13 64.3
Msa1386970 MtrunA17_Chr3g0081611 32.184 87 59 0 91 177 80 166 1.24e-12 62.8
Msa1386970 MtrunA17_Chr5g0396601 39.437 71 43 0 91 161 322 392 1.99e-12 64.3
Msa1386970 MtrunA17_Chr3g0118101 37.838 74 45 1 90 163 86 158 2.20e-12 62.4
Msa1386970 MtrunA17_Chr1g0197031 39.506 81 41 2 88 163 69 146 2.33e-12 62.0
Msa1386970 MtrunA17_Chr8g0345381 38.028 71 41 1 97 164 28 98 2.73e-12 61.2
Msa1386970 MtrunA17_Chr7g0248841 33.333 78 50 1 90 165 73 150 4.18e-12 61.2
Msa1386970 MtrunA17_Chr2g0301871 44.444 54 30 0 111 164 75 128 5.23e-12 62.8
Msa1386970 MtrunA17_Chr8g0369691 45.070 71 36 3 95 164 422 490 8.70e-12 62.8
Msa1386970 MtrunA17_Chr4g0037401 36.000 75 42 2 92 165 34 103 9.28e-12 58.9
Msa1386970 MtrunA17_Chr3g0118091 35.135 74 47 1 90 163 39 111 1.24e-11 59.3
Msa1386970 MtrunA17_Chr5g0396591 36.111 72 46 0 91 162 212 283 1.68e-11 61.2
Msa1386970 MtrunA17_Chr8g0347101 33.721 86 57 0 91 176 286 371 1.92e-11 61.6
Msa1386970 MtrunA17_Chr1g0197021 48.214 56 29 0 115 170 95 150 2.71e-11 58.9
Msa1386970 MtrunA17_Chr3g0124531 51.020 49 22 2 118 165 68 115 3.10e-11 58.5
Msa1386970 MtrunA17_Chr3g0118111 40.984 61 35 1 103 163 98 157 4.04e-11 58.9
Msa1386970 MtrunA17_Chr4g0059161 56.250 48 20 1 117 164 233 279 5.54e-11 60.1
Msa1386970 MtrunA17_Chr6g0451041 46.939 49 26 0 119 167 18 66 7.96e-11 56.2
Msa1386970 MtrunA17_Chr4g0065171 48.000 50 24 2 116 164 481 529 9.85e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386970 AT5G05280.1 56.287 167 65 4 7 169 1 163 2.32e-56 175
Msa1386970 AT3G10910.1 55.233 172 61 5 7 169 1 165 2.46e-55 173
Msa1386970 AT5G01880.1 56.250 160 62 4 7 166 1 152 2.28e-43 142
Msa1386970 AT1G49230.1 49.306 144 69 3 26 166 36 178 4.24e-42 140
Msa1386970 AT1G49220.1 43.609 133 71 2 37 166 51 182 5.06e-35 123
Msa1386970 AT1G49210.1 43.609 133 71 2 37 166 51 182 1.73e-34 121
Msa1386970 AT1G76410.1 45.985 137 69 3 33 165 15 150 5.50e-34 119
Msa1386970 AT1G20823.1 48.507 134 59 4 40 165 26 157 2.96e-33 117
Msa1386970 AT1G49200.1 40.602 133 75 2 37 166 52 183 2.21e-32 115
Msa1386970 AT3G18773.1 40.876 137 76 2 34 166 42 177 5.34e-32 114
Msa1386970 AT2G17450.1 44.961 129 60 2 41 164 25 147 1.59e-31 112
Msa1386970 AT4G35480.1 40.667 150 61 5 41 171 23 163 7.15e-27 101
Msa1386970 AT5G47610.1 40.000 135 71 4 30 164 28 152 6.82e-23 89.7
Msa1386970 AT4G17245.1 34.503 171 97 5 9 176 2 160 1.03e-22 89.4
Msa1386970 AT3G48030.2 35.417 144 77 4 35 164 33 174 2.52e-22 90.9
Msa1386970 AT3G48030.1 35.417 144 77 4 35 164 111 252 8.56e-22 90.5
Msa1386970 AT1G72220.1 33.077 130 75 2 45 164 95 222 2.06e-20 87.4
Msa1386970 AT2G18650.1 45.263 95 47 2 73 165 81 172 8.08e-20 85.9
Msa1386970 AT1G72200.1 38.462 143 75 6 36 168 54 193 9.71e-20 85.5
Msa1386970 AT1G74410.1 39.583 96 55 2 69 164 129 221 1.51e-19 82.4
Msa1386970 AT5G17600.1 52.113 71 32 1 91 161 116 184 1.51e-19 84.7
Msa1386970 AT4G17905.2 47.436 78 41 0 88 165 150 227 1.83e-19 84.3
Msa1386970 AT1G53820.1 41.509 106 53 4 74 176 80 179 1.91e-19 84.0
Msa1386970 AT4G17905.1 47.436 78 41 0 88 165 124 201 2.03e-19 83.6
Msa1386970 AT4G10160.1 34.848 132 70 4 46 169 24 147 4.81e-19 81.3
Msa1386970 AT5G10380.1 43.750 80 43 1 86 165 104 181 9.02e-19 82.0
Msa1386970 AT4G40070.1 38.843 121 66 3 50 164 51 169 1.16e-18 81.6
Msa1386970 AT4G15975.1 45.977 87 42 3 91 177 51 132 2.00e-18 79.7
Msa1386970 AT3G11110.1 38.636 132 75 4 37 164 23 152 2.02e-18 78.2
Msa1386970 AT3G14320.1 34.109 129 71 4 47 164 8 133 2.13e-18 79.0
Msa1386970 AT1G23980.1 41.489 94 45 3 82 168 109 199 2.34e-18 81.3
Msa1386970 AT1G72310.1 39.583 96 52 2 70 165 84 173 2.51e-18 80.9
Msa1386970 AT4G09110.1 36.154 130 75 5 38 164 44 168 3.54e-18 80.1
Msa1386970 AT2G46493.1 32.609 138 80 3 34 163 50 182 4.50e-18 77.8
Msa1386970 AT1G04360.1 29.814 161 94 4 31 177 32 187 4.70e-18 80.5
Msa1386970 AT2G17730.1 41.111 90 52 1 76 164 152 241 5.23e-18 79.0
Msa1386970 AT4G33565.1 40.449 89 51 1 81 169 181 267 8.44e-18 79.7
Msa1386970 AT3G03550.1 60.000 50 20 0 116 165 156 205 8.60e-18 79.7
Msa1386970 AT3G16720.1 44.048 84 43 2 83 166 86 165 1.12e-17 79.0
Msa1386970 AT2G47560.1 45.833 72 39 0 90 161 79 150 1.17e-17 77.8
Msa1386970 AT4G09120.1 34.783 138 80 5 33 164 35 168 1.19e-17 79.3
Msa1386970 AT4G10150.1 42.857 84 41 2 88 169 83 161 1.19e-17 77.8
Msa1386970 AT2G27940.1 45.833 72 36 1 90 161 114 182 1.32e-17 77.8
Msa1386970 AT1G35330.1 42.697 89 50 1 83 170 92 180 1.68e-17 78.6
Msa1386970 AT2G46494.1 40.909 88 49 1 76 163 276 360 2.08e-17 78.6
Msa1386970 AT3G19140.1 35.514 107 63 2 63 166 23 126 4.38e-17 74.3
Msa1386970 AT4G35840.1 41.573 89 51 1 77 164 148 236 4.78e-17 76.3
Msa1386970 AT3G62690.1 34.591 159 80 4 17 161 7 155 6.90e-17 76.3
Msa1386970 AT4G30400.1 46.341 82 39 2 82 161 98 176 8.02e-17 77.4
Msa1386970 AT3G18930.2 37.895 95 45 2 91 177 120 208 1.71e-16 76.3
Msa1386970 AT3G18930.3 37.895 95 45 2 91 177 120 208 1.71e-16 76.3
Msa1386970 AT3G18930.1 37.895 95 45 2 91 177 120 208 1.71e-16 76.3
Msa1386970 AT2G42360.1 31.544 149 76 5 35 168 20 157 1.74e-16 74.7
Msa1386970 AT3G05200.1 33.987 153 74 6 33 166 31 175 1.86e-16 76.3
Msa1386970 AT1G22500.1 31.690 142 91 4 32 168 27 167 2.04e-16 76.3
Msa1386970 AT5G57750.1 57.447 47 20 0 117 163 120 166 4.57e-16 73.2
Msa1386970 AT2G35910.1 41.379 87 49 1 91 177 121 205 5.82e-16 72.8
Msa1386970 AT5G66070.5 46.053 76 37 1 89 164 150 221 6.95e-16 72.8
Msa1386970 AT5G66070.1 46.053 76 37 1 89 164 150 221 6.95e-16 72.8
Msa1386970 AT5G43420.1 37.931 87 42 2 87 161 94 180 7.12e-16 74.3
Msa1386970 AT5G40250.1 33.793 145 72 4 45 165 45 189 7.51e-16 74.3
Msa1386970 AT5G06490.1 33.333 111 69 1 72 177 77 187 9.11e-16 72.0
Msa1386970 AT5G66070.2 40.909 88 48 1 77 164 162 245 9.21e-16 72.8
Msa1386970 AT1G28040.1 38.636 88 54 0 76 163 210 297 9.38e-16 73.6
Msa1386970 AT5G05810.1 43.662 71 38 1 91 161 120 188 2.08e-15 73.2
Msa1386970 AT2G35000.1 31.884 138 70 4 45 165 51 181 2.36e-15 73.2
Msa1386970 AT4G09100.1 37.037 81 50 1 86 165 51 131 2.48e-15 69.3
Msa1386970 AT1G33480.1 41.558 77 38 2 91 165 75 146 2.64e-15 72.0
Msa1386970 AT3G61550.1 35.238 105 59 1 75 170 83 187 3.54e-15 70.9
Msa1386970 AT5G42200.1 38.614 101 54 3 68 164 53 149 5.55e-15 69.3
Msa1386970 AT2G34990.2 27.815 151 97 4 28 168 19 167 5.99e-15 71.6
Msa1386970 AT4G28890.1 42.254 71 39 1 91 161 97 165 7.28e-15 71.6
Msa1386970 AT5G27420.1 41.772 79 45 1 89 166 93 171 1.11e-14 71.2
Msa1386970 AT3G20395.1 41.975 81 43 1 90 170 146 222 1.15e-14 69.7
Msa1386970 AT5G58580.1 43.373 83 46 1 83 165 103 184 1.57e-14 70.1
Msa1386970 AT2G25410.1 35.115 131 66 3 44 161 245 369 1.86e-14 70.5
Msa1386970 AT1G53010.1 38.554 83 46 2 89 166 95 177 1.97e-14 68.2
Msa1386970 AT2G34990.1 27.778 144 92 4 35 168 4 145 3.40e-14 69.3
Msa1386970 AT4G09130.1 37.363 91 42 2 82 164 82 165 4.22e-14 69.3
Msa1386970 AT2G20030.1 39.189 74 43 1 91 164 98 169 4.41e-14 69.3
Msa1386970 AT2G18670.1 40.541 74 43 1 88 161 80 152 7.75e-14 66.6
Msa1386970 AT5G36001.1 39.474 76 46 0 102 177 247 322 1.21e-13 67.8
Msa1386970 AT3G60220.1 31.034 116 66 2 64 165 48 163 1.32e-13 67.8
Msa1386970 AT4G30370.1 35.443 79 49 1 89 167 87 163 1.90e-13 65.5
Msa1386970 AT1G32361.1 35.789 95 51 2 70 164 115 199 2.00e-13 67.4
Msa1386970 AT2G46495.2 57.778 45 19 0 119 163 292 336 4.43e-13 66.6
Msa1386970 AT2G46495.1 57.778 45 19 0 119 163 320 364 4.61e-13 66.6
Msa1386970 AT2G17730.2 44.118 68 37 1 88 154 164 231 5.46e-13 65.5
Msa1386970 AT2G34000.1 34.400 125 70 6 54 172 25 143 6.73e-13 63.5
Msa1386970 AT2G35420.1 42.254 71 39 1 91 161 77 145 9.04e-13 64.7
Msa1386970 AT2G46160.1 36.047 86 49 1 91 170 104 189 1.26e-12 63.9
Msa1386970 AT2G46160.2 36.047 86 49 1 91 170 104 189 1.26e-12 63.9
Msa1386970 AT2G42350.1 34.615 78 48 1 84 161 68 142 1.75e-12 63.5
Msa1386970 AT5G07040.1 36.986 73 46 0 91 163 66 138 2.99e-12 62.0
Msa1386970 AT5G53110.1 31.452 124 75 2 47 163 254 374 3.69e-12 63.9
Msa1386970 AT1G51930.1 50.000 46 23 0 119 164 80 125 9.06e-12 60.1
Msa1386970 AT2G44578.1 37.500 64 40 0 105 168 56 119 2.45e-11 58.9
Msa1386970 AT4G35840.2 57.143 42 18 0 123 164 227 268 5.28e-11 60.1
Msa1386970 AT2G40830.1 44.068 59 29 2 117 175 188 242 5.61e-11 60.5
Msa1386970 AT2G40830.3 44.068 59 29 2 117 175 188 242 5.61e-11 60.5
Msa1386970 AT2G40830.4 44.068 59 29 2 117 175 188 242 5.61e-11 60.5
Msa1386970 AT2G40830.2 44.068 59 29 2 117 175 188 242 5.61e-11 60.5
Msa1386970 AT1G35630.1 41.096 73 40 3 92 163 207 277 5.74e-11 60.5
Msa1386970 AT4G26580.1 37.037 81 46 2 88 164 254 333 7.66e-11 60.1
Msa1386970 AT4G26580.2 37.037 81 46 2 88 164 254 333 7.66e-11 60.1
Msa1386970 AT3G60966.1 48.077 52 27 0 119 170 62 113 8.16e-11 57.8

Find 39 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTGTCTTGGGGAGTTTA+TGG 0.182982 tig0020873:+27872 Msa1386970:CDS
AAGATCCCTGTAGCTGTTTA+TGG 0.200756 tig0020873:+27807 Msa1386970:CDS
CCTGTAGCTGTTTATGGTTC+TGG 0.227112 tig0020873:+27813 Msa1386970:CDS
TGGAATCCATGGTTACATTT+TGG 0.242603 tig0020873:-27918 None:intergenic
CAGATTGTCCAATTTGTCTT+GGG 0.338119 tig0020873:+27862 Msa1386970:CDS
ATAAACTCCCCAAGACAAAT+TGG 0.339075 tig0020873:-27870 None:intergenic
CACAAACATGGTGTTTATCT+TGG 0.362685 tig0020873:+27635 Msa1386970:CDS
CTGCATCAGGTTACATGAAT+AGG 0.369975 tig0020873:+27571 Msa1386970:CDS
CCAGAACCATAAACAGCTAC+AGG 0.434615 tig0020873:-27813 None:intergenic
ACAGATTGTCCAATTTGTCT+TGG 0.451845 tig0020873:+27861 Msa1386970:CDS
TCAACTTCAACAACTGCATC+AGG 0.458250 tig0020873:+27558 Msa1386970:CDS
GTATTCTAAGATGTAGCAAC+AGG 0.460663 tig0020873:+27712 Msa1386970:CDS
AAACGAGCCATAGCTTCATC+TGG 0.480687 tig0020873:-27750 None:intergenic
ATGTAAAATGCATAGATACT+TGG 0.483275 tig0020873:+27940 Msa1386970:CDS
AAAAGCGATGGAGGCGTTGA+CGG 0.488135 tig0020873:-27521 None:intergenic
TAGGACTCAACTCAATTGTA+AGG 0.500887 tig0020873:+27688 Msa1386970:CDS
TGTCTTGGGGAGTTTATGGA+TGG 0.502903 tig0020873:+27876 Msa1386970:CDS
ATTGAATATCCAACTAGTTG+TGG 0.506431 tig0020873:+28005 Msa1386970:CDS
TATGGCTCGTTTAGCATCAA+AGG 0.508862 tig0020873:+27761 Msa1386970:CDS
GTGTCAAAATTTGAATCACC+CGG 0.518583 tig0020873:-27615 None:intergenic
ATGGCTCGTTTAGCATCAAA+GGG 0.522422 tig0020873:+27762 Msa1386970:CDS
GAATCACCCGGGGTTGTGAA+AGG 0.533851 tig0020873:-27603 None:intergenic
TGAGACACCAGATGAAGCTA+TGG 0.537024 tig0020873:+27743 Msa1386970:CDS
GATGCAGCTCCACAACTAGT+TGG 0.541547 tig0020873:-28014 None:intergenic
AGGGAGCCTTTCACAACCCC+GGG 0.550632 tig0020873:+27597 Msa1386970:CDS
AAGGGAGCCTTTCACAACCC+CGG 0.552213 tig0020873:+27596 Msa1386970:CDS
AGATTGTCCAATTTGTCTTG+GGG 0.572119 tig0020873:+27863 Msa1386970:CDS
GGACTGTCTACAAGTAGGAC+AGG 0.572813 tig0020873:-27979 None:intergenic
GTAGCTGTTTATGGTTCTGG+AGG 0.576795 tig0020873:+27816 Msa1386970:CDS
ACTAGTTGGATATTCAATCA+AGG 0.577607 tig0020873:-28000 None:intergenic
CAGGTTACATGAATAGGTCA+AGG 0.577739 tig0020873:+27577 Msa1386970:CDS
GTTCTACCAAAATGTAACCA+TGG 0.617307 tig0020873:+27912 Msa1386970:CDS
AAGACAAATTGGACAATCTG+TGG 0.626962 tig0020873:-27859 None:intergenic
TGTCAAAATTTGAATCACCC+GGG 0.631752 tig0020873:-27614 None:intergenic
ATCAAGGACTGTCTACAAGT+AGG 0.634022 tig0020873:-27984 None:intergenic
AGGTTACATGAATAGGTCAA+GGG 0.636876 tig0020873:+27578 Msa1386970:CDS
CTGTCTACAAGTAGGACAGG+AGG 0.639395 tig0020873:-27976 None:intergenic
GTCAAAATTTGAATCACCCG+GGG 0.644474 tig0020873:-27613 None:intergenic
CAGAACCATAAACAGCTACA+GGG 0.647630 tig0020873:-27812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAAATTTTGACACAAACA+TGG + tig0020873:27623-27642 Msa1386970:CDS 25.0%
!! AAGTATCTATGCATTTTACA+TGG - tig0020873:27941-27960 None:intergenic 25.0%
! ATGTAAAATGCATAGATACT+TGG + tig0020873:27940-27959 Msa1386970:CDS 25.0%
ACTAGTTGGATATTCAATCA+AGG - tig0020873:28003-28022 None:intergenic 30.0%
ATTGAATATCCAACTAGTTG+TGG + tig0020873:28005-28024 Msa1386970:CDS 30.0%
AGGTTACATGAATAGGTCAA+GGG + tig0020873:27578-27597 Msa1386970:CDS 35.0%
TGTCAAAATTTGAATCACCC+GGG - tig0020873:27617-27636 None:intergenic 35.0%
GTGTCAAAATTTGAATCACC+CGG - tig0020873:27618-27637 None:intergenic 35.0%
CACAAACATGGTGTTTATCT+TGG + tig0020873:27635-27654 Msa1386970:CDS 35.0%
!!! TGTGCACTTATTTTTGCACT+AGG + tig0020873:27669-27688 Msa1386970:CDS 35.0%
TAGGACTCAACTCAATTGTA+AGG + tig0020873:27688-27707 Msa1386970:CDS 35.0%
!! GTATTCTAAGATGTAGCAAC+AGG + tig0020873:27712-27731 Msa1386970:CDS 35.0%
AAGACAAATTGGACAATCTG+TGG - tig0020873:27862-27881 None:intergenic 35.0%
ACAGATTGTCCAATTTGTCT+TGG + tig0020873:27861-27880 Msa1386970:CDS 35.0%
CAGATTGTCCAATTTGTCTT+GGG + tig0020873:27862-27881 Msa1386970:CDS 35.0%
AGATTGTCCAATTTGTCTTG+GGG + tig0020873:27863-27882 Msa1386970:CDS 35.0%
ATAAACTCCCCAAGACAAAT+TGG - tig0020873:27873-27892 None:intergenic 35.0%
AATTTGTCTTGGGGAGTTTA+TGG + tig0020873:27872-27891 Msa1386970:CDS 35.0%
GTTCTACCAAAATGTAACCA+TGG + tig0020873:27912-27931 Msa1386970:CDS 35.0%
! TGGAATCCATGGTTACATTT+TGG - tig0020873:27921-27940 None:intergenic 35.0%
! TGCATTTTACATGGAATCCA+TGG - tig0020873:27932-27951 None:intergenic 35.0%
TCAACTTCAACAACTGCATC+AGG + tig0020873:27558-27577 Msa1386970:CDS 40.0%
CTGCATCAGGTTACATGAAT+AGG + tig0020873:27571-27590 Msa1386970:CDS 40.0%
CAGGTTACATGAATAGGTCA+AGG + tig0020873:27577-27596 Msa1386970:CDS 40.0%
GTCAAAATTTGAATCACCCG+GGG - tig0020873:27616-27635 None:intergenic 40.0%
TATGGCTCGTTTAGCATCAA+AGG + tig0020873:27761-27780 Msa1386970:CDS 40.0%
ATGGCTCGTTTAGCATCAAA+GGG + tig0020873:27762-27781 Msa1386970:CDS 40.0%
AAGATCCCTGTAGCTGTTTA+TGG + tig0020873:27807-27826 Msa1386970:CDS 40.0%
CAGAACCATAAACAGCTACA+GGG - tig0020873:27815-27834 None:intergenic 40.0%
ATCAAGGACTGTCTACAAGT+AGG - tig0020873:27987-28006 None:intergenic 40.0%
TGTCAAGCAAAAAGCGATGG+AGG - tig0020873:27533-27552 None:intergenic 45.0%
CTGTGTCAAGCAAAAAGCGA+TGG - tig0020873:27536-27555 None:intergenic 45.0%
TGAGACACCAGATGAAGCTA+TGG + tig0020873:27743-27762 Msa1386970:CDS 45.0%
AAACGAGCCATAGCTTCATC+TGG - tig0020873:27753-27772 None:intergenic 45.0%
CCAGAACCATAAACAGCTAC+AGG - tig0020873:27816-27835 None:intergenic 45.0%
CCTGTAGCTGTTTATGGTTC+TGG + tig0020873:27813-27832 Msa1386970:CDS 45.0%
!! GTAGCTGTTTATGGTTCTGG+AGG + tig0020873:27816-27835 Msa1386970:CDS 45.0%
TGTCTTGGGGAGTTTATGGA+TGG + tig0020873:27876-27895 Msa1386970:CDS 45.0%
!! AAAAGCGATGGAGGCGTTGA+CGG - tig0020873:27524-27543 None:intergenic 50.0%
CTGTCTACAAGTAGGACAGG+AGG - tig0020873:27979-27998 None:intergenic 50.0%
GGACTGTCTACAAGTAGGAC+AGG - tig0020873:27982-28001 None:intergenic 50.0%
GATGCAGCTCCACAACTAGT+TGG - tig0020873:28017-28036 None:intergenic 50.0%
AAGGGAGCCTTTCACAACCC+CGG + tig0020873:27596-27615 Msa1386970:CDS 55.0%
GAATCACCCGGGGTTGTGAA+AGG - tig0020873:27606-27625 None:intergenic 55.0%
AGGGAGCCTTTCACAACCCC+GGG + tig0020873:27597-27616 Msa1386970:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0020873 gene 27513 28046 27513 ID=Msa1386970;Name=Msa1386970
tig0020873 mRNA 27513 28046 27513 ID=Msa1386970-mRNA-1;Parent=Msa1386970;Name=Msa1386970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|177
tig0020873 exon 27513 28046 27513 ID=Msa1386970-mRNA-1:exon:10399;Parent=Msa1386970-mRNA-1
tig0020873 CDS 27513 28046 27513 ID=Msa1386970-mRNA-1:cds;Parent=Msa1386970-mRNA-1
Gene Sequence

>Msa1386970

ATGGCTCTCCGTCAACGCCTCCATCGCTTTTTGCTTGACACAGATTCAACTTCAACAACTGCATCAGGTTACATGAATAGGTCAAGGGAGCCTTTCACAACCCCGGGTGATTCAAATTTTGACACAAACATGGTGTTTATCTTGGCAGCTTTACTTTGTGCACTTATTTTTGCACTAGGACTCAACTCAATTGTAAGGTGTATTCTAAGATGTAGCAACAGGTTTGCTTTTGAGACACCAGATGAAGCTATGGCTCGTTTAGCATCAAAGGGTTTAAAGAAAAGTGCATTGCGTAAGATCCCTGTAGCTGTTTATGGTTCTGGAGGTAGTAGTACTAGTTTTACAGCCACAGATTGTCCAATTTGTCTTGGGGAGTTTATGGATGGAGAGAAAGTTAGAGTTCTACCAAAATGTAACCATGGATTCCATGTAAAATGCATAGATACTTGGTTGCTTTCACACTCCTCCTGTCCTACTTGTAGACAGTCCTTGATTGAATATCCAACTAGTTGTGGAGCTGCATCTGTTCTGTGA
Protein sequence

>Msa1386970

MALRQRLHRFLLDTDSTSTTASGYMNRSREPFTTPGDSNFDTNMVFILAALLCALIFALGLNSIVRCILRCSNRFAFETPDEAMARLASKGLKKSALRKIPVAVYGSGGSSTSFTATDCPICLGEFMDGEKVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLIEYPTSCGAASVL*