AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1029010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029010 MtrunA17_Chr7g0249441 92.038 314 19 2 1 314 1 308 0.0 550
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029010 AT1G65230.1 64.286 266 83 4 49 314 33 286 6.11e-123 354

Find 88 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCAGCATGAAGAATTT+TGG 0.125608 7_1:+62273925 Msa1029010:CDS
GAATGACTTGTCCACTAATT+TGG 0.200921 7_1:-62273908 None:intergenic
CTGATGTTTGTCTACGTATC+TGG 0.255925 7_1:+62272346 Msa1029010:five_prime_UTR
AATTTGGTTAAGCGTAAATT+TGG 0.268859 7_1:-62273892 None:intergenic
ATCAGAGTTCTCTTCTTTCT+TGG 0.276153 7_1:-62274072 None:intergenic
AAAATTAGCACTCAAATTCT+TGG 0.285342 7_1:-62274045 None:intergenic
TTCAGATGTTGCTGATAAAA+TGG 0.295505 7_1:+62272765 Msa1029010:CDS
TTATGAACTTCGCTATTTGA+TGG 0.299508 7_1:-62275583 None:intergenic
GATATTTATCCAGATCCTTC+TGG 0.318352 7_1:+62274092 Msa1029010:CDS
TTTACGCTTAACCAAATTAG+TGG 0.347218 7_1:+62273897 Msa1029010:CDS
TGATGTTTAATGAAAACTTA+AGG 0.351733 7_1:+62272230 None:intergenic
AAAAGTATAAGAGACCTCTA+TGG 0.372478 7_1:+62273056 Msa1029010:CDS
GATGTTTAATGAAAACTTAA+GGG 0.374615 7_1:+62272231 None:intergenic
TCAGAGTTCTCTTCTTTCTT+GGG 0.383027 7_1:-62274071 None:intergenic
AGTATCAAGTGGACAGTTAG+AGG 0.384239 7_1:+62273813 Msa1029010:CDS
ATTGTTTGCAGGATCCTATC+AGG 0.388892 7_1:+62273017 Msa1029010:intron
CACACTATCCTCCACGGAAT+GGG 0.402608 7_1:+62272392 Msa1029010:five_prime_UTR
ACACCAGCTAGAACAGATTT+AGG 0.403229 7_1:-62273840 None:intergenic
GGTTGAATCTGTGAAAGATT+TGG 0.404444 7_1:+62274013 Msa1029010:CDS
AAGAAGGGTGGTGGTGGTGG+TGG 0.412015 7_1:-62272560 None:intergenic
GTGGAGGATAGTGTGTTGTT+TGG 0.416104 7_1:-62272384 None:intergenic
GTAAAATGCAGATCACAATA+AGG 0.422991 7_1:-62275309 None:intergenic
TGGAGGATAGTGTGTTGTTT+GGG 0.425424 7_1:-62272383 None:intergenic
TTCGGTCCTATCAGCATCAT+TGG 0.433294 7_1:-62272710 None:intergenic
CTGCCAGGAGTAGTGCAATC+TGG 0.441053 7_1:-62275233 None:intergenic
GTGGTGGTGGTGAGGACGGA+AGG 0.443547 7_1:-62272544 None:intergenic
ATGAAGAAGGGTGGTGGTGG+TGG 0.455331 7_1:-62272563 None:intergenic
GTTGAAAGCCGTCGTCCCTC+TGG 0.459959 7_1:-62275200 None:intergenic
TAATTTAAACTCACCACAGA+TGG 0.463620 7_1:-62273100 None:intergenic
TGCTGTTTCTGTCACTTACA+AGG 0.463924 7_1:+62272921 Msa1029010:CDS
GTTGGATCACCAGAAGGATC+TGG 0.473479 7_1:-62274101 None:intergenic
CGTCCACTAAAACTCCTGAT+AGG 0.474927 7_1:-62273031 None:intergenic
ATCTTCACCTGCTAGTGCTC+AGG 0.479652 7_1:+62273956 Msa1029010:CDS
CTCGTGATATATTTGAGCTA+AGG 0.495749 7_1:+62272872 Msa1029010:CDS
GCGGTGGAGTGTGGTGGAGG+AGG 0.503309 7_1:-62272478 None:intergenic
ATGTTACCTCGCAATGAAGA+AGG 0.504154 7_1:-62272576 None:intergenic
GTTGCGGTGGAGTGTGGTGG+AGG 0.508278 7_1:-62272481 None:intergenic
CAGTTGCCAATGATGCTGAT+AGG 0.508689 7_1:+62272704 Msa1029010:intron
TCTGTTCTAGCTGGTGTAGG+AGG 0.514108 7_1:+62273846 Msa1029010:CDS
ATAAGAGAACTCACCTTGGT+TGG 0.519117 7_1:-62274119 None:intergenic
ATCGCGTGTTCTGTTTGCTA+CGG 0.519764 7_1:+62273992 Msa1029010:CDS
ATGGTTGATAGTATCGACTT+TGG 0.522738 7_1:+62272784 Msa1029010:CDS
GTAGCGGCGGCGAGAGAACA+AGG 0.524484 7_1:-62272447 None:intergenic
GTGGTGAGGACGGAAGGAGA+AGG 0.532176 7_1:-62272538 None:intergenic
TGGTGAGGACGGAAGGAGAA+GGG 0.532434 7_1:-62272537 None:intergenic
GTTTGGTTAACAGACTGTGC+AGG 0.537078 7_1:+62273761 Msa1029010:intron
TGTGGTATCAGATGATAGTT+CGG 0.542233 7_1:-62272728 None:intergenic
ACACACTATCCTCCACGGAA+TGG 0.543373 7_1:+62272391 Msa1029010:five_prime_UTR
AGGAGTGGGAATCGAGCACT+TGG 0.543642 7_1:+62272892 Msa1029010:CDS
TGTATTGTTGCGGTGGAGTG+TGG 0.544574 7_1:-62272487 None:intergenic
AAGCCTAAATCTGTTCTAGC+TGG 0.546046 7_1:+62273837 Msa1029010:CDS
CTGTTCTAGCTGGTGTAGGA+GGG 0.562411 7_1:+62273847 Msa1029010:CDS
CCACAAAATATATAACTGCC+AGG 0.563060 7_1:-62275248 None:intergenic
ACGAGCAAGTTGTCTTGCAG+TGG 0.572718 7_1:-62272854 None:intergenic
GCAATGAAGAAGGGTGGTGG+TGG 0.573986 7_1:-62272566 None:intergenic
ACTCCAGATTGCACTACTCC+TGG 0.574194 7_1:+62275230 Msa1029010:CDS
AAATCTGTTCTAGCTGGTGT+AGG 0.576290 7_1:+62273843 Msa1029010:CDS
GTATCAAGTGGACAGTTAGA+GGG 0.582280 7_1:+62273814 Msa1029010:CDS
CACCACCCTTCTTCATTGCG+AGG 0.583185 7_1:+62272570 Msa1029010:CDS
AAAGTATAAGAGACCTCTAT+GGG 0.587841 7_1:+62273057 Msa1029010:CDS
AATTTAAACTCACCACAGAT+GGG 0.588338 7_1:-62273099 None:intergenic
CTCGCAATGAAGAAGGGTGG+TGG 0.588720 7_1:-62272569 None:intergenic
GATATATTTGAGCTAAGGAG+TGG 0.589959 7_1:+62272877 Msa1029010:CDS
ACACTATCCTCCACGGAATG+GGG 0.594565 7_1:+62272393 Msa1029010:five_prime_UTR
TGAGTGCAATAGTAGTCCCT+CGG 0.596094 7_1:+62272825 Msa1029010:CDS
ATTCATGTCTCCCCATTCCG+TGG 0.596739 7_1:-62272403 None:intergenic
TGTTACCTCGCAATGAAGAA+GGG 0.597020 7_1:-62272575 None:intergenic
TGTTCTAGCTGGTGTAGGAG+GGG 0.597266 7_1:+62273848 Msa1029010:CDS
CTTGCAGTGGATTCAACCGA+GGG 0.597295 7_1:-62272841 None:intergenic
CAGTTCTTCCAGAGGGACGA+CGG 0.599235 7_1:+62275192 Msa1029010:intron
ATTGTTGCGGTGGAGTGTGG+TGG 0.607961 7_1:-62272484 None:intergenic
GGAGGAGGAAAGAGAAGTAG+CGG 0.614638 7_1:-62272463 None:intergenic
GGAGGAAAGAGAAGTAGCGG+CGG 0.616632 7_1:-62272460 None:intergenic
TGTTGGATGTATTGTTGCGG+TGG 0.621579 7_1:-62272494 None:intergenic
GAACAAGGACAAGAAAGTGC+GGG 0.622504 7_1:-62272432 None:intergenic
GCATGTGCGTACTACTATGT+TGG 0.627195 7_1:-62272511 None:intergenic
ATATATTTGAGCTAAGGAGT+GGG 0.636515 7_1:+62272878 Msa1029010:CDS
ACCTTGGTTGGATCACCAGA+AGG 0.644200 7_1:-62274107 None:intergenic
CTATGTTGGATGTATTGTTG+CGG 0.649341 7_1:-62272497 None:intergenic
TCTTGCAGTGGATTCAACCG+AGG 0.655059 7_1:-62272842 None:intergenic
AAACAACACACTATCCTCCA+CGG 0.657287 7_1:+62272386 Msa1029010:five_prime_UTR
GTAAGTGACAGAAACAGCAT+AGG 0.662129 7_1:-62272917 None:intergenic
AGAACAAGGACAAGAAAGTG+CGG 0.667273 7_1:-62272433 None:intergenic
TGCACTTGAAAACCCATCTG+TGG 0.671005 7_1:+62273087 Msa1029010:CDS
TCCTTCTGGTGATCCAACCA+AGG 0.672407 7_1:+62274106 Msa1029010:CDS
AGTGCAGTGATAGCCCATAG+AGG 0.679550 7_1:-62273070 None:intergenic
CATGTCTCCCCATTCCGTGG+AGG 0.679841 7_1:-62272400 None:intergenic
TACCTCGCAATGAAGAAGGG+TGG 0.698185 7_1:-62272572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTAAATTTGACAAA+AGG + chr7_1:62273710-62273729 Msa1029010:intron 10.0%
!!! ATTTTTATGGAAAATTACAT+TGG - chr7_1:62272260-62272279 None:intergenic 15.0%
!!! TTTTTCCTTTTTAATTTGAT+GGG + chr7_1:62273228-62273247 Msa1029010:intron 15.0%
!!! ATAAAGTCAAATTGTTTTAT+AGG + chr7_1:62274867-62274886 Msa1029010:intron 15.0%
!! GATTGTATTATTCATTTATT+TGG + chr7_1:62275120-62275139 Msa1029010:intron 15.0%
!! GAATATTGATATATGTTATG+TGG + chr7_1:62272670-62272689 Msa1029010:intron 20.0%
!!! AGGTATTTATTTCTCTTTAA+TGG + chr7_1:62272941-62272960 Msa1029010:intron 20.0%
!!! ATAAAAGATTTAAAGTCCAA+AGG - chr7_1:62272971-62272990 None:intergenic 20.0%
!!! GATTTTTTTTTATTGTTTGC+AGG + chr7_1:62273006-62273025 Msa1029010:intron 20.0%
!!! GTTTTTCCTTTTTAATTTGA+TGG + chr7_1:62273227-62273246 Msa1029010:intron 20.0%
!! TACAAAATGTTGTCAAATAA+CGG + chr7_1:62273361-62273380 Msa1029010:intron 20.0%
!! CAAATTTCAATATATTTGAG+TGG + chr7_1:62273619-62273638 Msa1029010:intron 20.0%
!! AATTAAATTTGACAAAAGGA+AGG + chr7_1:62273714-62273733 Msa1029010:intron 20.0%
!!! GTTATGAAATTTGTTTTGTT+TGG + chr7_1:62273744-62273763 Msa1029010:intron 20.0%
!!! TCTTATCTTTTATCTTCTTA+AGG + chr7_1:62274173-62274192 Msa1029010:intron 20.0%
!!! TTTATCTTCTTAAGGTATTT+TGG + chr7_1:62274181-62274200 Msa1029010:intron 20.0%
!!! GCTATTATCTTTTTTTTGAA+TGG + chr7_1:62274249-62274268 Msa1029010:intron 20.0%
!!! TTATTGTTTTTTTTTCTTCC+GGG - chr7_1:62274426-62274445 None:intergenic 20.0%
!!! GTTATTGTTTTTTTTTCTTC+CGG - chr7_1:62274427-62274446 None:intergenic 20.0%
!! AAAGAAATAAACTAGAAGAT+TGG - chr7_1:62275029-62275048 None:intergenic 20.0%
!!! TTTTTACCATTATTACATGA+TGG + chr7_1:62275054-62275073 Msa1029010:intron 20.0%
!!! TTTCATGCTTCTTTTTTCTA+TGG - chr7_1:62272308-62272327 None:intergenic 25.0%
! TGAAAAAGAAGAAAAAGAAG+AGG + chr7_1:62272323-62272342 Msa1029010:five_prime_UTR 25.0%
! AAGAATGGTGAAATAAAACA+TGG - chr7_1:62273663-62273682 None:intergenic 25.0%
! GAAAGTGAAATCTAAAAGAA+TGG - chr7_1:62273678-62273697 None:intergenic 25.0%
! AATTTGGTTAAGCGTAAATT+TGG - chr7_1:62273895-62273914 None:intergenic 25.0%
! AAAATTAGCACTCAAATTCT+TGG - chr7_1:62274048-62274067 None:intergenic 25.0%
!!! AAGGTATTTTGGTTACTTTT+TGG + chr7_1:62274192-62274211 Msa1029010:intron 25.0%
!!! TATTGTTTTTTTTTCTTCCG+GGG - chr7_1:62274425-62274444 None:intergenic 25.0%
! AAAAAAACAATAACACTTGC+AGG + chr7_1:62274433-62274452 Msa1029010:intron 25.0%
! AAAAAACAATAACACTTGCA+GGG + chr7_1:62274434-62274453 Msa1029010:intron 25.0%
!! AATGATATAATCTTTTCTGG+TGG - chr7_1:62274603-62274622 None:intergenic 25.0%
! CAGAAAAGATTATATCATTC+CGG + chr7_1:62274604-62274623 Msa1029010:intron 25.0%
!!! TTTTAGTTTGGCATGTTATT+TGG - chr7_1:62274644-62274663 None:intergenic 25.0%
!!! TCATTTTTAATAAGCTATCC+AGG - chr7_1:62274910-62274929 None:intergenic 25.0%
! TTCATACCATCATGTAATAA+TGG - chr7_1:62275063-62275082 None:intergenic 25.0%
!! TCTTTTCATGACTTAATTGT+TGG + chr7_1:62275155-62275174 Msa1029010:intron 25.0%
!!! AAGCTTTTATGACTTTGTTT+AGG + chr7_1:62275447-62275466 Msa1029010:three_prime_UTR 25.0%
!!! TCATAAGTTGTTTTAGAGTA+CGG + chr7_1:62275600-62275619 Msa1029010:three_prime_UTR 25.0%
!!! GCTTCTTTTTTCTATGGATA+AGG - chr7_1:62272302-62272321 None:intergenic 30.0%
!! TGAATATGATTTTTCAGCTG+TGG - chr7_1:62272749-62272768 None:intergenic 30.0%
TTCAGATGTTGCTGATAAAA+TGG + chr7_1:62272765-62272784 Msa1029010:CDS 30.0%
ATATATTTGAGCTAAGGAGT+GGG + chr7_1:62272878-62272897 Msa1029010:CDS 30.0%
! TCTCTTTAATGGTTTTCCTT+TGG + chr7_1:62272952-62272971 Msa1029010:intron 30.0%
! AAAAGTATAAGAGACCTCTA+TGG + chr7_1:62273056-62273075 Msa1029010:CDS 30.0%
AAAGTATAAGAGACCTCTAT+GGG + chr7_1:62273057-62273076 Msa1029010:CDS 30.0%
AATTTAAACTCACCACAGAT+GGG - chr7_1:62273102-62273121 None:intergenic 30.0%
TAATTTAAACTCACCACAGA+TGG - chr7_1:62273103-62273122 None:intergenic 30.0%
!! TGATTAGTCTATGAAGCAAT+AGG + chr7_1:62273123-62273142 Msa1029010:intron 30.0%
!! GATTAGTCTATGAAGCAATA+GGG + chr7_1:62273124-62273143 Msa1029010:intron 30.0%
TCTAGCCCATCAAATTAAAA+AGG - chr7_1:62273236-62273255 None:intergenic 30.0%
TATATCATACTGCAAAACAC+TGG - chr7_1:62273331-62273350 None:intergenic 30.0%
AAAGACATGAAATTGATCAG+TGG - chr7_1:62273495-62273514 None:intergenic 30.0%
AATCGATGGAATATCTAAGA+AGG - chr7_1:62273535-62273554 None:intergenic 30.0%
!! GAAGTTTTTAAAGGAATCGA+TGG - chr7_1:62273549-62273568 None:intergenic 30.0%
! CCTCAAATGGAAGTTTTTAA+AGG - chr7_1:62273558-62273577 None:intergenic 30.0%
! CCTTTAAAAACTTCCATTTG+AGG + chr7_1:62273555-62273574 Msa1029010:intron 30.0%
TCTTAAACAGTTACCTCAAA+TGG - chr7_1:62273571-62273590 None:intergenic 30.0%
AAATTTGACAAAAGGAAGGT+AGG + chr7_1:62273718-62273737 Msa1029010:intron 30.0%
!! CAAGTGTTTTAAGTATCAAG+TGG + chr7_1:62273802-62273821 Msa1029010:CDS 30.0%
TTTACGCTTAACCAAATTAG+TGG + chr7_1:62273897-62273916 Msa1029010:CDS 30.0%
! TCATTCAGCATGAAGAATTT+TGG + chr7_1:62273925-62273944 Msa1029010:CDS 30.0%
! CATTCAGCATGAAGAATTTT+GGG + chr7_1:62273926-62273945 Msa1029010:CDS 30.0%
CTAGAAGAATCTTAAACTTG+TGG + chr7_1:62274142-62274161 Msa1029010:intron 30.0%
TCTACTATGAGTGCTTAATT+AGG - chr7_1:62274226-62274245 None:intergenic 30.0%
!!! TTTTTTGATTGCTGTTTTGG+CGG - chr7_1:62274321-62274340 None:intergenic 30.0%
!!! GTGTTTTTTGATTGCTGTTT+TGG - chr7_1:62274324-62274343 None:intergenic 30.0%
AACACAACAAAAAAAACCTG+AGG + chr7_1:62274339-62274358 Msa1029010:intron 30.0%
ACACAACAAAAAAAACCTGA+GGG + chr7_1:62274340-62274359 Msa1029010:intron 30.0%
!!! TTTCTCTTTTTGGTGTTTCT+GGG - chr7_1:62274399-62274418 None:intergenic 30.0%
!!! TTTTCTCTTTTTGGTGTTTC+TGG - chr7_1:62274400-62274419 None:intergenic 30.0%
! CGGAATGATATAATCTTTTC+TGG - chr7_1:62274606-62274625 None:intergenic 30.0%
AATGAGCTGAAAACAACTTA+CGG + chr7_1:62274925-62274944 Msa1029010:intron 30.0%
! ATTTTATTCAGTTCTTCCAG+AGG + chr7_1:62275184-62275203 Msa1029010:intron 30.0%
! TTTTATTCAGTTCTTCCAGA+GGG + chr7_1:62275185-62275204 Msa1029010:intron 30.0%
GTAAAATGCAGATCACAATA+AGG - chr7_1:62275312-62275331 None:intergenic 30.0%
TTATGAACTTCGCTATTTGA+TGG - chr7_1:62275586-62275605 None:intergenic 30.0%
!!! CATAAGTTGTTTTAGAGTAC+GGG + chr7_1:62275601-62275620 Msa1029010:three_prime_UTR 30.0%
!!! ATAAGTTGTTTTAGAGTACG+GGG + chr7_1:62275602-62275621 Msa1029010:three_prime_UTR 30.0%
CTATGTTGGATGTATTGTTG+CGG - chr7_1:62272500-62272519 None:intergenic 35.0%
TGTGGTATCAGATGATAGTT+CGG - chr7_1:62272731-62272750 None:intergenic 35.0%
!! ATGGTTGATAGTATCGACTT+TGG + chr7_1:62272784-62272803 Msa1029010:CDS 35.0%
CTCGTGATATATTTGAGCTA+AGG + chr7_1:62272872-62272891 Msa1029010:CDS 35.0%
GATATATTTGAGCTAAGGAG+TGG + chr7_1:62272877-62272896 Msa1029010:CDS 35.0%
! GAATGACTTGTCCACTAATT+TGG - chr7_1:62273911-62273930 None:intergenic 35.0%
GGTTGAATCTGTGAAAGATT+TGG + chr7_1:62274013-62274032 Msa1029010:CDS 35.0%
TCAGAGTTCTCTTCTTTCTT+GGG - chr7_1:62274074-62274093 None:intergenic 35.0%
ATCAGAGTTCTCTTCTTTCT+TGG - chr7_1:62274075-62274094 None:intergenic 35.0%
GATATTTATCCAGATCCTTC+TGG + chr7_1:62274092-62274111 Msa1029010:CDS 35.0%
!!! GATTAGGGTTGCTTTTAGTT+TGG - chr7_1:62274656-62274675 None:intergenic 35.0%
!! GTTGTTTTCATAAACTGTCC+TGG + chr7_1:62274889-62274908 Msa1029010:intron 35.0%
ATGAGCTGAAAACAACTTAC+GGG + chr7_1:62274926-62274945 Msa1029010:intron 35.0%
CCACAAAATATATAACTGCC+AGG - chr7_1:62275251-62275270 None:intergenic 35.0%
! CCTGGCAGTTATATATTTTG+TGG + chr7_1:62275248-62275267 Msa1029010:CDS 35.0%
! ATTTTGTGGTACAAGTTCTG+AGG + chr7_1:62275262-62275281 Msa1029010:CDS 35.0%
CTGATGTTTGTCTACGTATC+TGG + chr7_1:62272346-62272365 Msa1029010:five_prime_UTR 40.0%
!! TGGAGGATAGTGTGTTGTTT+GGG - chr7_1:62272386-62272405 None:intergenic 40.0%
AAACAACACACTATCCTCCA+CGG + chr7_1:62272386-62272405 Msa1029010:five_prime_UTR 40.0%
AGAACAAGGACAAGAAAGTG+CGG - chr7_1:62272436-62272455 None:intergenic 40.0%
TGTTACCTCGCAATGAAGAA+GGG - chr7_1:62272578-62272597 None:intergenic 40.0%
ATGTTACCTCGCAATGAAGA+AGG - chr7_1:62272579-62272598 None:intergenic 40.0%
GTATCAGTGTGCATGTGTAA+GGG - chr7_1:62272621-62272640 None:intergenic 40.0%
TGTATCAGTGTGCATGTGTA+AGG - chr7_1:62272622-62272641 None:intergenic 40.0%
GTAAGTGACAGAAACAGCAT+AGG - chr7_1:62272920-62272939 None:intergenic 40.0%
!! TGCTGTTTCTGTCACTTACA+AGG + chr7_1:62272921-62272940 Msa1029010:CDS 40.0%
ATTGTTTGCAGGATCCTATC+AGG + chr7_1:62273017-62273036 Msa1029010:intron 40.0%
!! GATCCTATCAGGAGTTTTAG+TGG + chr7_1:62273028-62273047 Msa1029010:CDS 40.0%
ATCTCAGTGATGTCAGATAG+CGG + chr7_1:62273264-62273283 Msa1029010:intron 40.0%
!! AGCGGTGCTATAGTATATAG+TGG + chr7_1:62273282-62273301 Msa1029010:intron 40.0%
GTTGTCAAATAACGGCTAAG+CGG + chr7_1:62273369-62273388 Msa1029010:intron 40.0%
AGTATCAAGTGGACAGTTAG+AGG + chr7_1:62273813-62273832 Msa1029010:CDS 40.0%
GTATCAAGTGGACAGTTAGA+GGG + chr7_1:62273814-62273833 Msa1029010:CDS 40.0%
AAGCCTAAATCTGTTCTAGC+TGG + chr7_1:62273837-62273856 Msa1029010:CDS 40.0%
ACACCAGCTAGAACAGATTT+AGG - chr7_1:62273843-62273862 None:intergenic 40.0%
! AAATCTGTTCTAGCTGGTGT+AGG + chr7_1:62273843-62273862 Msa1029010:CDS 40.0%
ATAAGAGAACTCACCTTGGT+TGG - chr7_1:62274122-62274141 None:intergenic 40.0%
CTAGATAAGAGAACTCACCT+TGG - chr7_1:62274126-62274145 None:intergenic 40.0%
ACCAAAAAGAGAAAACACCC+CGG + chr7_1:62274405-62274424 Msa1029010:intron 40.0%
!! AAATCGGTAAGGTTTTGTCG+TGG - chr7_1:62274550-62274569 None:intergenic 40.0%
ATCATTCCGGAAAGTCCAAT+TGG + chr7_1:62274617-62274636 Msa1029010:intron 40.0%
TTTGGACCAATTGGACTTTC+CGG - chr7_1:62274626-62274645 None:intergenic 40.0%
! GGCATGTTATTTGGACCAAT+TGG - chr7_1:62274635-62274654 None:intergenic 40.0%
CTACAGTTTCTGAGTTTCCT+GGG - chr7_1:62274702-62274721 None:intergenic 40.0%
CAGGAAACTCAGAAACTGTA+GGG + chr7_1:62274701-62274720 Msa1029010:intron 40.0%
GCAAAAGATAAACAGAAGCG+CGG + chr7_1:62274797-62274816 Msa1029010:intron 40.0%
! GTGGAGGATAGTGTGTTGTT+TGG - chr7_1:62272387-62272406 None:intergenic 45.0%
! GAACAAGGACAAGAAAGTGC+GGG - chr7_1:62272435-62272454 None:intergenic 45.0%
TGTTGGATGTATTGTTGCGG+TGG - chr7_1:62272497-62272516 None:intergenic 45.0%
GCATGTGCGTACTACTATGT+TGG - chr7_1:62272514-62272533 None:intergenic 45.0%
CAGTTGCCAATGATGCTGAT+AGG + chr7_1:62272704-62272723 Msa1029010:intron 45.0%
TTCGGTCCTATCAGCATCAT+TGG - chr7_1:62272713-62272732 None:intergenic 45.0%
TGAGTGCAATAGTAGTCCCT+CGG + chr7_1:62272825-62272844 Msa1029010:CDS 45.0%
CGTCCACTAAAACTCCTGAT+AGG - chr7_1:62273034-62273053 None:intergenic 45.0%
TGCACTTGAAAACCCATCTG+TGG + chr7_1:62273087-62273106 Msa1029010:CDS 45.0%
ATGTCGTCAATCGCGAATAG+CGG - chr7_1:62273431-62273450 None:intergenic 45.0%
GTTTGGTTAACAGACTGTGC+AGG + chr7_1:62273761-62273780 Msa1029010:intron 45.0%
AAAAATGCCTGAGCACTAGC+AGG - chr7_1:62273966-62273985 None:intergenic 45.0%
! CTAGTGCTCAGGCATTTTTC+TGG + chr7_1:62273967-62273986 Msa1029010:CDS 45.0%
! ATCGCGTGTTCTGTTTGCTA+CGG + chr7_1:62273992-62274011 Msa1029010:CDS 45.0%
!! TCCGGGGTGTTTTCTCTTTT+TGG - chr7_1:62274409-62274428 None:intergenic 45.0%
AGATAGAGAGAGACATCTCG+AGG + chr7_1:62274461-62274480 Msa1029010:intron 45.0%
GATAGAGAGAGACATCTCGA+GGG + chr7_1:62274462-62274481 Msa1029010:intron 45.0%
ATAGAGAGAGACATCTCGAG+GGG + chr7_1:62274463-62274482 Msa1029010:intron 45.0%
!! AACCTTACCGATTTCAGCAC+AGG + chr7_1:62274556-62274575 Msa1029010:intron 45.0%
TTCCTGTGCTGAAATCGGTA+AGG - chr7_1:62274561-62274580 None:intergenic 45.0%
!! TTACCGATTTCAGCACAGGA+AGG + chr7_1:62274560-62274579 Msa1029010:intron 45.0%
!! TACCGATTTCAGCACAGGAA+GGG + chr7_1:62274561-62274580 Msa1029010:intron 45.0%
CGGGGAAGAGAGTTAGATTA+GGG - chr7_1:62274671-62274690 None:intergenic 45.0%
TCGGGGAAGAGAGTTAGATT+AGG - chr7_1:62274672-62274691 None:intergenic 45.0%
TTTCTGAGTTTCCTGGGCTT+AGG - chr7_1:62274696-62274715 None:intergenic 45.0%
CCTACAGTTTCTGAGTTTCC+TGG - chr7_1:62274703-62274722 None:intergenic 45.0%
CCAGGAAACTCAGAAACTGT+AGG + chr7_1:62274700-62274719 Msa1029010:intron 45.0%
AACTCAGAAACTGTAGGGCT+AGG + chr7_1:62274706-62274725 Msa1029010:intron 45.0%
!! TATCAGCTCTCTGGTTTGCT+GGG - chr7_1:62274756-62274775 None:intergenic 45.0%
GCACATCTACTCTTACTGTG+TGG - chr7_1:62274779-62274798 None:intergenic 45.0%
TCTCTCAAGTAGTCTCGCAA+GGG + chr7_1:62274974-62274993 Msa1029010:intron 45.0%
!!! TCATTTAATTTTAATTTTTA+TGG - chr7_1:62272273-62272292 None:intergenic 5.0%
ACACACTATCCTCCACGGAA+TGG + chr7_1:62272391-62272410 Msa1029010:five_prime_UTR 50.0%
CACACTATCCTCCACGGAAT+GGG + chr7_1:62272392-62272411 Msa1029010:five_prime_UTR 50.0%
ACACTATCCTCCACGGAATG+GGG + chr7_1:62272393-62272412 Msa1029010:five_prime_UTR 50.0%
ATTCATGTCTCCCCATTCCG+TGG - chr7_1:62272406-62272425 None:intergenic 50.0%
GGAGGAGGAAAGAGAAGTAG+CGG - chr7_1:62272466-62272485 None:intergenic 50.0%
TGTATTGTTGCGGTGGAGTG+TGG - chr7_1:62272490-62272509 None:intergenic 50.0%
TACCTCGCAATGAAGAAGGG+TGG - chr7_1:62272575-62272594 None:intergenic 50.0%
! CTTGCAGTGGATTCAACCGA+GGG - chr7_1:62272844-62272863 None:intergenic 50.0%
! TCTTGCAGTGGATTCAACCG+AGG - chr7_1:62272845-62272864 None:intergenic 50.0%
ACGAGCAAGTTGTCTTGCAG+TGG - chr7_1:62272857-62272876 None:intergenic 50.0%
AGTGCAGTGATAGCCCATAG+AGG - chr7_1:62273073-62273092 None:intergenic 50.0%
! TCTGTTCTAGCTGGTGTAGG+AGG + chr7_1:62273846-62273865 Msa1029010:CDS 50.0%
! CTGTTCTAGCTGGTGTAGGA+GGG + chr7_1:62273847-62273866 Msa1029010:CDS 50.0%
! TGTTCTAGCTGGTGTAGGAG+GGG + chr7_1:62273848-62273867 Msa1029010:CDS 50.0%
ATCTTCACCTGCTAGTGCTC+AGG + chr7_1:62273956-62273975 Msa1029010:CDS 50.0%
GTTGGATCACCAGAAGGATC+TGG - chr7_1:62274104-62274123 None:intergenic 50.0%
TCCTTCTGGTGATCCAACCA+AGG + chr7_1:62274106-62274125 Msa1029010:CDS 50.0%
ACCTTGGTTGGATCACCAGA+AGG - chr7_1:62274110-62274129 None:intergenic 50.0%
TCCTTTGTTGGGGTGTGAGT+TGG - chr7_1:62274366-62274385 None:intergenic 50.0%
TCACACCCCAACAAAGGACA+CGG + chr7_1:62274368-62274387 Msa1029010:intron 50.0%
TAGCTCCGTGTCCTTTGTTG+GGG - chr7_1:62274376-62274395 None:intergenic 50.0%
GTAGCTCCGTGTCCTTTGTT+GGG - chr7_1:62274377-62274396 None:intergenic 50.0%
AGCCCTTCCTGTGCTGAAAT+CGG - chr7_1:62274566-62274585 None:intergenic 50.0%
AGTTTCCTGGGCTTAGGATC+GGG - chr7_1:62274690-62274709 None:intergenic 50.0%
GAGTTTCCTGGGCTTAGGAT+CGG - chr7_1:62274691-62274710 None:intergenic 50.0%
AAACTGTAGGGCTAGGCCTA+GGG + chr7_1:62274713-62274732 Msa1029010:intron 50.0%
TGGGTGTATGTGTTTCCCCT+AGG - chr7_1:62274732-62274751 None:intergenic 50.0%
! GTATCAGCTCTCTGGTTTGC+TGG - chr7_1:62274757-62274776 None:intergenic 50.0%
ACTGTGTGGTATCAGCTCTC+TGG - chr7_1:62274765-62274784 None:intergenic 50.0%
CTCTCTCAAGTAGTCTCGCA+AGG + chr7_1:62274973-62274992 Msa1029010:intron 50.0%
ACTCCAGATTGCACTACTCC+TGG + chr7_1:62275230-62275249 Msa1029010:CDS 50.0%
GGAGGAAAGAGAAGTAGCGG+CGG - chr7_1:62272463-62272482 None:intergenic 55.0%
ATTGTTGCGGTGGAGTGTGG+TGG - chr7_1:62272487-62272506 None:intergenic 55.0%
TGGTGAGGACGGAAGGAGAA+GGG - chr7_1:62272540-62272559 None:intergenic 55.0%
!! ATGAAGAAGGGTGGTGGTGG+TGG - chr7_1:62272566-62272585 None:intergenic 55.0%
! GCAATGAAGAAGGGTGGTGG+TGG - chr7_1:62272569-62272588 None:intergenic 55.0%
CTCGCAATGAAGAAGGGTGG+TGG - chr7_1:62272572-62272591 None:intergenic 55.0%
CACCACCCTTCTTCATTGCG+AGG + chr7_1:62272570-62272589 Msa1029010:CDS 55.0%
AGGAGTGGGAATCGAGCACT+TGG + chr7_1:62272892-62272911 Msa1029010:CDS 55.0%
! CGCGAATAGCGGAAGATAGC+TGG - chr7_1:62273420-62273439 None:intergenic 55.0%
!!! TGCTGTTTTGGCGGCGCTTT+TGG - chr7_1:62274312-62274331 None:intergenic 55.0%
GCCAACTCACACCCCAACAA+AGG + chr7_1:62274362-62274381 Msa1029010:intron 55.0%
GGTAGCTCCGTGTCCTTTGT+TGG - chr7_1:62274378-62274397 None:intergenic 55.0%
! TTCTGGTGGCTTGCCTTCAG+TGG - chr7_1:62274589-62274608 None:intergenic 55.0%
GTTTCCTGGGCTTAGGATCG+GGG - chr7_1:62274689-62274708 None:intergenic 55.0%
GAAACTGTAGGGCTAGGCCT+AGG + chr7_1:62274712-62274731 Msa1029010:intron 55.0%
AACTGTAGGGCTAGGCCTAG+GGG + chr7_1:62274714-62274733 Msa1029010:intron 55.0%
!! GCTCTCTGGTTTGCTGGGTT+GGG - chr7_1:62274751-62274770 None:intergenic 55.0%
!! AGCTCTCTGGTTTGCTGGGT+TGG - chr7_1:62274752-62274771 None:intergenic 55.0%
CAGTTCTTCCAGAGGGACGA+CGG + chr7_1:62275192-62275211 Msa1029010:intron 55.0%
CTGCCAGGAGTAGTGCAATC+TGG - chr7_1:62275236-62275255 None:intergenic 55.0%
CATGTCTCCCCATTCCGTGG+AGG - chr7_1:62272403-62272422 None:intergenic 60.0%
GTGGTGAGGACGGAAGGAGA+AGG - chr7_1:62272541-62272560 None:intergenic 60.0%
!! AAGAAGGGTGGTGGTGGTGG+TGG - chr7_1:62272563-62272582 None:intergenic 60.0%
GAGAGAGACATCTCGAGGGG+AGG + chr7_1:62274466-62274485 Msa1029010:intron 60.0%
GAGACATCTCGAGGGGAGGA+CGG + chr7_1:62274470-62274489 Msa1029010:intron 60.0%
TCGAGGGGAGGACGGACAAA+GGG + chr7_1:62274478-62274497 Msa1029010:intron 60.0%
TCGAGCCTGAGGCTGTCTGT+GGG - chr7_1:62274525-62274544 None:intergenic 60.0%
TTGTCGTGGAGTCGAGCCTG+AGG - chr7_1:62274536-62274555 None:intergenic 60.0%
CACAGGAAGGGCTCCACTGA+AGG + chr7_1:62274573-62274592 Msa1029010:intron 60.0%
TCTTCCCCGATCCTAAGCCC+AGG + chr7_1:62274682-62274701 Msa1029010:intron 60.0%
GTTGAAAGCCGTCGTCCCTC+TGG - chr7_1:62275203-62275222 None:intergenic 60.0%
GTAGCGGCGGCGAGAGAACA+AGG - chr7_1:62272450-62272469 None:intergenic 65.0%
GTTGCGGTGGAGTGTGGTGG+AGG - chr7_1:62272484-62272503 None:intergenic 65.0%
!! GTGGTGGTGGTGAGGACGGA+AGG - chr7_1:62272547-62272566 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGAGGA+CGG - chr7_1:62272551-62272570 None:intergenic 65.0%
!! TGGTGGTGGTGGTGGTGGTG+AGG - chr7_1:62272555-62272574 None:intergenic 65.0%
!! AAGGGTGGTGGTGGTGGTGG+TGG - chr7_1:62272560-62272579 None:intergenic 65.0%
! TGGGGTGTGAGTTGGCCCTC+AGG - chr7_1:62274358-62274377 None:intergenic 65.0%
CTCGAGGGGAGGACGGACAA+AGG + chr7_1:62274477-62274496 Msa1029010:intron 65.0%
AGGGGAGGACGGACAAAGGG+AGG + chr7_1:62274481-62274500 Msa1029010:intron 65.0%
TGAGGCTGTCTGTGGGGTGG+GGG - chr7_1:62274518-62274537 None:intergenic 65.0%
CTGAGGCTGTCTGTGGGGTG+GGG - chr7_1:62274519-62274538 None:intergenic 65.0%
CCTGAGGCTGTCTGTGGGGT+GGG - chr7_1:62274520-62274539 None:intergenic 65.0%
CGAGCCTGAGGCTGTCTGTG+GGG - chr7_1:62274524-62274543 None:intergenic 65.0%
GTCGAGCCTGAGGCTGTCTG+TGG - chr7_1:62274526-62274545 None:intergenic 65.0%
! GCGGTGGAGTGTGGTGGAGG+AGG - chr7_1:62272481-62272500 None:intergenic 70.0%
GCTGTCTGTGGGGTGGGGGT+GGG - chr7_1:62274514-62274533 None:intergenic 70.0%
CCCACCCCACAGACAGCCTC+AGG + chr7_1:62274517-62274536 Msa1029010:intron 70.0%
GCCTGAGGCTGTCTGTGGGG+TGG - chr7_1:62274521-62274540 None:intergenic 70.0%
GGCTGTCTGTGGGGTGGGGG+TGG - chr7_1:62274515-62274534 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62272232 62275690 62272232 ID=Msa1029010;Name=Msa1029010
chr7_1 mRNA 62272232 62275690 62272232 ID=Msa1029010-mRNA-1;Parent=Msa1029010;Name=Msa1029010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=188|1|1|1|0.75|0.8|5|394|314
chr7_1 exon 62272232 62272591 62272232 ID=Msa1029010-mRNA-1:exon:13231;Parent=Msa1029010-mRNA-1
chr7_1 exon 62272707 62272942 62272707 ID=Msa1029010-mRNA-1:exon:13232;Parent=Msa1029010-mRNA-1
chr7_1 exon 62273028 62273108 62273028 ID=Msa1029010-mRNA-1:exon:13233;Parent=Msa1029010-mRNA-1
chr7_1 exon 62273774 62274127 62273774 ID=Msa1029010-mRNA-1:exon:13234;Parent=Msa1029010-mRNA-1
chr7_1 exon 62275195 62275690 62275195 ID=Msa1029010-mRNA-1:exon:13235;Parent=Msa1029010-mRNA-1
chr7_1 five_prime_UTR 62272232 62272419 62272232 ID=Msa1029010-mRNA-1:five_prime_utr;Parent=Msa1029010-mRNA-1
chr7_1 CDS 62272420 62272591 62272420 ID=Msa1029010-mRNA-1:cds;Parent=Msa1029010-mRNA-1
chr7_1 CDS 62272707 62272942 62272707 ID=Msa1029010-mRNA-1:cds;Parent=Msa1029010-mRNA-1
chr7_1 CDS 62273028 62273108 62273028 ID=Msa1029010-mRNA-1:cds;Parent=Msa1029010-mRNA-1
chr7_1 CDS 62273774 62274127 62273774 ID=Msa1029010-mRNA-1:cds;Parent=Msa1029010-mRNA-1
chr7_1 CDS 62275195 62275296 62275195 ID=Msa1029010-mRNA-1:cds;Parent=Msa1029010-mRNA-1
chr7_1 three_prime_UTR 62275297 62275690 62275297 ID=Msa1029010-mRNA-1:three_prime_utr;Parent=Msa1029010-mRNA-1
Gene Sequence

>Msa1029010

ATGAATCTCACACCCGCACTTTCTTGTCCTTGTTCTCTCGCCGCCGCTACTTCTCTTTCCTCCTCCACCACACTCCACCGCAACAATACATCCAACATAGTAGTACGCACATGCACACCCTTCTCCTTCCGTCCTCACCACCACCACCACCACCACCCTTCTTCATTGCGAGTTGCCAATGATGCTGATAGGACCGAACTATCATCTGATACCACAGCTGAAAAATCATATTCAGATGTTGCTGATAAAATGGTTGATAGTATCGACTTTGGTGAGCTATGTAATGAGTTTGAGTGCAATAGTAGTCCCTCGGTTGAATCCACTGCAAGACAACTTGCTCGTGATATATTTGAGCTAAGGAGTGGGAATCGAGCACTTGGAACCTATGCTGTTTCTGTCACTTACAAGGATCCTATCAGGAGTTTTAGTGGACGTGAAAAGTATAAGAGACCTCTATGGGCTATCACTGCACTTGAAAACCCATCTGTGACTGTGCAGGAAATGACTATGCTGTCAACAAGTGTTTTAAGTATCAAGTGGACAGTTAGAGGGAAGCCTAAATCTGTTCTAGCTGGTGTAGGAGGGGAACTCATACTTAGAGTTACTTCCAAATTTACGCTTAACCAAATTAGTGGACAAGTCATTCAGCATGAAGAATTTTGGGACTTATCATCTTCACCTGCTAGTGCTCAGGCATTTTTCTGGTCATCGCGTGTTCTGTTTGCTACGGTTGAATCTGTGAAAGATTTGGTTGATAGTGCCAAGAATTTGAGTGCTAATTTTTCACCCAAGAAAGAAGAGAACTCTGATATTTATCCAGATCCTTCTGGTGATCCAACCAAGTTCTTCCAGAGGGACGACGGCTTTCAACAAGATGTACTCCAGATTGCACTACTCCTGGCAGTTATATATTTTGTGGTACAAGTTCTGAGGATAACTTTGTAA

Protein sequence

>Msa1029010

MNLTPALSCPCSLAAATSLSSSTTLHRNNTSNIVVRTCTPFSFRPHHHHHHHPSSLRVANDADRTELSSDTTAEKSYSDVADKMVDSIDFGELCNEFECNSSPSVESTARQLARDIFELRSGNRALGTYAVSVTYKDPIRSFSGREKYKRPLWAITALENPSVTVQEMTMLSTSVLSIKWTVRGKPKSVLAGVGGELILRVTSKFTLNQISGQVIQHEEFWDLSSSPASAQAFFWSSRVLFATVESVKDLVDSAKNLSANFSPKKEENSDIYPDPSGDPTKFFQRDDGFQQDVLQIALLLAVIYFVVQVLRITL*