Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387600 | GAU14190.1 | 74.380 | 242 | 40 | 3 | 3 | 224 | 70 | 309 | 9.07e-98 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387600 | sp|Q8L7A0|TAUE3_ARATH | 68.889 | 180 | 53 | 2 | 3 | 181 | 72 | 249 | 1.20e-65 | 213 |
| Msa1387600 | sp|Q8L7A0|TAUE3_ARATH | 56.000 | 75 | 33 | 0 | 150 | 224 | 296 | 370 | 8.02e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387600 | A0A7J7GHM2 | 59.608 | 255 | 68 | 2 | 3 | 224 | 72 | 324 | 3.44e-80 | 255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1381530 | Msa1387600 | 0.822769 | 1.984065e-53 | -8.615850e-47 |
| Msa0521630 | Msa1387600 | 0.822095 | 2.845284e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387600 | MtrunA17_Chr3g0139541 | 85.034 | 147 | 20 | 1 | 3 | 149 | 71 | 215 | 1.16e-74 | 233 |
| Msa1387600 | MtrunA17_Chr3g0139541 | 72.000 | 75 | 21 | 0 | 150 | 224 | 290 | 364 | 8.53e-23 | 95.5 |
| Msa1387600 | MtrunA17_Chr5g0403901 | 70.345 | 145 | 41 | 1 | 3 | 147 | 74 | 216 | 3.18e-61 | 198 |
| Msa1387600 | MtrunA17_Chr8g0373471 | 71.429 | 147 | 40 | 1 | 3 | 149 | 67 | 211 | 3.47e-60 | 196 |
| Msa1387600 | MtrunA17_Chr8g0380211 | 66.216 | 148 | 48 | 1 | 3 | 150 | 72 | 217 | 5.85e-55 | 182 |
| Msa1387600 | MtrunA17_Chr7g0265481 | 61.379 | 145 | 54 | 1 | 3 | 147 | 55 | 197 | 1.49e-52 | 175 |
| Msa1387600 | MtrunA17_Chr1g0157751 | 52.406 | 187 | 83 | 2 | 3 | 189 | 51 | 231 | 7.38e-51 | 171 |
| Msa1387600 | MtrunA17_Chr8g0380191 | 49.282 | 209 | 63 | 1 | 59 | 224 | 9 | 217 | 3.05e-50 | 166 |
| Msa1387600 | MtrunA17_Chr1g0179621 | 57.241 | 145 | 60 | 1 | 3 | 147 | 56 | 198 | 2.24e-46 | 159 |
| Msa1387600 | MtrunA17_Chr3g0139621 | 68.750 | 64 | 20 | 0 | 161 | 224 | 27 | 90 | 2.64e-15 | 70.5 |
| Msa1387600 | MtrunA17_Chr2g0280401 | 34.351 | 131 | 81 | 3 | 36 | 163 | 87 | 215 | 1.80e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387600 | AT2G25737.2 | 68.889 | 180 | 53 | 2 | 3 | 181 | 72 | 249 | 1.25e-67 | 212 |
| Msa1387600 | AT2G25737.2 | 56.000 | 75 | 33 | 0 | 150 | 224 | 296 | 370 | 7.43e-15 | 72.8 |
| Msa1387600 | AT2G25737.1 | 68.889 | 180 | 53 | 2 | 3 | 181 | 72 | 249 | 1.22e-66 | 213 |
| Msa1387600 | AT2G25737.1 | 56.000 | 75 | 33 | 0 | 150 | 224 | 296 | 370 | 8.15e-15 | 73.2 |
| Msa1387600 | AT2G36630.1 | 55.862 | 145 | 62 | 1 | 3 | 147 | 52 | 194 | 7.34e-48 | 163 |
| Msa1387600 | AT1G11540.2 | 42.361 | 144 | 78 | 4 | 35 | 176 | 79 | 219 | 1.78e-23 | 97.8 |
| Msa1387600 | AT1G11540.1 | 40.580 | 138 | 79 | 2 | 40 | 176 | 1 | 136 | 1.83e-22 | 94.4 |
| Msa1387600 | AT1G61740.1 | 38.667 | 150 | 89 | 2 | 2 | 150 | 50 | 197 | 6.43e-20 | 87.8 |
| Msa1387600 | AT4G21260.1 | 36.364 | 110 | 63 | 3 | 38 | 147 | 73 | 175 | 1.74e-13 | 68.9 |
Find 62 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTGTGTTATTGCCTTAC+TGG | 0.128495 | tig0020912:+125351 | Msa1387600:CDS |
| AGGTAGGATGCCTCAGTTTA+AGG | 0.184914 | tig0020912:-123334 | None:intergenic |
| TCAACTAAAGCATTCTTTAA+AGG | 0.195205 | tig0020912:+123592 | Msa1387600:CDS |
| GCAACGTTATATTTCCTAAT+TGG | 0.207868 | tig0020912:+123438 | Msa1387600:CDS |
| GTTATGCAGGAAATGGAATT+TGG | 0.220314 | tig0020912:+120428 | Msa1387600:intron |
| ATTTGGGTGGCGAATTGTTT+TGG | 0.236205 | tig0020912:+120445 | Msa1387600:CDS |
| GAGATAGCCGTAGATGATTT+AGG | 0.240024 | tig0020912:-120569 | None:intergenic |
| GCCAAATCATAGTCAATAAT+TGG | 0.269429 | tig0020912:-123365 | None:intergenic |
| GCCAATTATTGACTATGATT+TGG | 0.277334 | tig0020912:+123364 | Msa1387600:CDS |
| CAACTAAAGCATTCTTTAAA+GGG | 0.285668 | tig0020912:+123593 | Msa1387600:CDS |
| AATATAGTCACAAGCCAATT+AGG | 0.287287 | tig0020912:-123452 | None:intergenic |
| CTATGATTAGTCTTATTATT+GGG | 0.302506 | tig0020912:+120540 | Msa1387600:CDS |
| TAAGGAAACCATAATGAAAA+AGG | 0.303076 | tig0020912:+123630 | Msa1387600:CDS |
| TCTATGATTAGTCTTATTAT+TGG | 0.311454 | tig0020912:+120539 | Msa1387600:CDS |
| GTGCAGATTCCAATCTCATT+TGG | 0.311886 | tig0020912:+125229 | Msa1387600:intron |
| TGCAGATTCCAATCTCATTT+GGG | 0.313349 | tig0020912:+125230 | Msa1387600:intron |
| AGGGGTTGAGACATGGAATA+AGG | 0.326091 | tig0020912:+123612 | Msa1387600:CDS |
| TGGCGTACTCGGTGGATTGT+TGG | 0.379079 | tig0020912:+125375 | Msa1387600:CDS |
| TTTGGAAGCGTTGGTGGTAT+TGG | 0.379280 | tig0020912:+120497 | Msa1387600:CDS |
| TTCTTTCCCTTGGTCGCCTA+TGG | 0.400658 | tig0020912:-125305 | None:intergenic |
| GGCGTACTCGGTGGATTGTT+GGG | 0.402747 | tig0020912:+125376 | Msa1387600:CDS |
| GCCTTACTGGCTGGCGTACT+CGG | 0.406008 | tig0020912:+125364 | Msa1387600:CDS |
| TTATGCAGGAAATGGAATTT+GGG | 0.411245 | tig0020912:+120429 | Msa1387600:intron |
| TATGGTCATGGGTGTGTCTC+TGG | 0.422703 | tig0020912:+123295 | Msa1387600:CDS |
| TAACACAATAGATGATTAGT+TGG | 0.439361 | tig0020912:-125339 | None:intergenic |
| TGTGTTATTGCCTTACTGGC+TGG | 0.446356 | tig0020912:+125355 | Msa1387600:CDS |
| GGAAGCGTTGGTGGTATTGG+TGG | 0.457442 | tig0020912:+120500 | Msa1387600:CDS |
| TAGCTGTAAATTCTTTCCCT+TGG | 0.462364 | tig0020912:-125315 | None:intergenic |
| ACAGTTACCCCAAATGAGAT+TGG | 0.462663 | tig0020912:-125238 | None:intergenic |
| ACCGAGTACGCCAGCCAGTA+AGG | 0.475453 | tig0020912:-125365 | None:intergenic |
| ATTTGGGGTAACTGTATATG+AGG | 0.480113 | tig0020912:+125246 | Msa1387600:CDS |
| TTGTGGAAATCAGATGGATC+CGG | 0.480152 | tig0020912:+119896 | None:intergenic |
| GTTTGCTTCAGGTATGGTCA+TGG | 0.490765 | tig0020912:+123283 | Msa1387600:intron |
| ATTCAACCTATGCTTATGCT+TGG | 0.496468 | tig0020912:+123395 | Msa1387600:CDS |
| GAGGCAACTGCATTATTCAC+AGG | 0.513347 | tig0020912:+125265 | Msa1387600:CDS |
| AGCGTTGGTGGTATTGGTGG+TGG | 0.516406 | tig0020912:+120503 | Msa1387600:CDS |
| CTTATGCTTGGAATCAGCAT+TGG | 0.519202 | tig0020912:+123407 | Msa1387600:CDS |
| GGAGCGTTTGGAAGCGTTGG+TGG | 0.522663 | tig0020912:+120491 | Msa1387600:CDS |
| GGATTGTTGGGACTAGGAGG+CGG | 0.524109 | tig0020912:+125388 | Msa1387600:CDS |
| TTTGCTTCAGGTATGGTCAT+GGG | 0.524119 | tig0020912:+123284 | Msa1387600:intron |
| GTTTGATCCTAAATCATCTA+CGG | 0.525763 | tig0020912:+120562 | Msa1387600:CDS |
| CTCGGTGGATTGTTGGGACT+AGG | 0.537823 | tig0020912:+125382 | Msa1387600:CDS |
| TCTTTAAAGGGGTTGAGACA+TGG | 0.539156 | tig0020912:+123605 | Msa1387600:CDS |
| TAAACTGAGGCATCCTACCT+TGG | 0.541474 | tig0020912:+123337 | Msa1387600:CDS |
| AACACAATAGATGATTAGTT+GGG | 0.544781 | tig0020912:-125338 | None:intergenic |
| GTTGGTGGTATTGGTGGTGG+TGG | 0.551633 | tig0020912:+120506 | Msa1387600:CDS |
| AACTAAAGCATTCTTTAAAG+GGG | 0.553035 | tig0020912:+123594 | Msa1387600:CDS |
| CATTGCAGTACAGATTGCTA+AGG | 0.554231 | tig0020912:+124946 | Msa1387600:intron |
| GTCAATAATTGGCATGTCCA+AGG | 0.558233 | tig0020912:-123354 | None:intergenic |
| GGAGGAGCGTTTGGAAGCGT+TGG | 0.577581 | tig0020912:+120488 | Msa1387600:CDS |
| ATTTGAAACTCACTTGAGGA+GGG | 0.578779 | tig0020912:-125447 | None:intergenic |
| AATTTGAAACTCACTTGAGG+AGG | 0.583316 | tig0020912:-125448 | None:intergenic |
| ACTAGGAGGCGGATTCATGT+TGG | 0.598929 | tig0020912:+125399 | Msa1387600:CDS |
| TTAGCTTCCATAGGCGACCA+AGG | 0.600501 | tig0020912:+125298 | Msa1387600:CDS |
| GCAGATTCCAATCTCATTTG+GGG | 0.608721 | tig0020912:+125231 | Msa1387600:intron |
| TGCAGGAAATGGAATTTGGG+TGG | 0.610262 | tig0020912:+120432 | Msa1387600:intron |
| CTGATTCCAAGCATAAGCAT+AGG | 0.613635 | tig0020912:-123401 | None:intergenic |
| ATAATTGGCATGTCCAAGGT+AGG | 0.619549 | tig0020912:-123350 | None:intergenic |
| TTACTGGCTGGCGTACTCGG+TGG | 0.621474 | tig0020912:+125367 | Msa1387600:CDS |
| GGTGGATTGTTGGGACTAGG+AGG | 0.632796 | tig0020912:+125385 | Msa1387600:CDS |
| TAGCTTCCATAGGCGACCAA+GGG | 0.645205 | tig0020912:+125299 | Msa1387600:CDS |
| AGGCAACTGCATTATTCACA+GGG | 0.652144 | tig0020912:+125266 | Msa1387600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAAAAAAAATATT+GGG | - | tig0020912:124225-124244 | None:intergenic | 0.0% |
| !!! | ATAATGAATATTTTTTTTGA+AGG | - | tig0020912:120079-120098 | None:intergenic | 10.0% |
| !!! | AAGTATTAAAGTTTTTTTTA+AGG | + | tig0020912:120265-120284 | Msa1387600:intron | 10.0% |
| !!! | ATTTTTAAAAAAAAGCTTTA+CGG | - | tig0020912:120316-120335 | None:intergenic | 10.0% |
| !!! | TACAAATATTTTATTTATTG+TGG | + | tig0020912:121293-121312 | Msa1387600:intron | 10.0% |
| !!! | ACAAATATTTTATTTATTGT+GGG | + | tig0020912:121294-121313 | Msa1387600:intron | 10.0% |
| !! | TATTTGTAGATTTATTATAT+AGG | - | tig0020912:121350-121369 | None:intergenic | 10.0% |
| !!! | AAAAATTAACTAACTAATTT+TGG | - | tig0020912:121731-121750 | None:intergenic | 10.0% |
| !! | TATTTCTCAATTAAAAATAT+GGG | - | tig0020912:122271-122290 | None:intergenic | 10.0% |
| !! | ATATTTCTCAATTAAAAATA+TGG | - | tig0020912:122272-122291 | None:intergenic | 10.0% |
| !! | GACTTATAATAAAATTTCTA+AGG | - | tig0020912:119964-119983 | None:intergenic | 15.0% |
| !! | ATAGCGTAATAAATAATAAA+TGG | + | tig0020912:120139-120158 | Msa1387600:intron | 15.0% |
| !!! | ATTTTATCTTTAATATCTAC+TGG | - | tig0020912:121044-121063 | None:intergenic | 15.0% |
| !!! | ATAAATTATTGACTATGATT+TGG | + | tig0020912:121212-121231 | Msa1387600:intron | 15.0% |
| !!! | CAAATATTTTATTTATTGTG+GGG | + | tig0020912:121295-121314 | Msa1387600:intron | 15.0% |
| !!! | ATTTGAAATTAATAAGTGAT+GGG | + | tig0020912:121626-121645 | Msa1387600:intron | 15.0% |
| !!! | AAATTCATTAAAAGCTTTAT+AGG | - | tig0020912:121818-121837 | None:intergenic | 15.0% |
| !!! | TTTTAAACTTTTGAAATATG+TGG | + | tig0020912:122197-122216 | Msa1387600:intron | 15.0% |
| !!! | TTTAAACTTTTGAAATATGT+GGG | + | tig0020912:122198-122217 | Msa1387600:intron | 15.0% |
| !! | AAAACTTATTATATTAGACA+TGG | + | tig0020912:122310-122329 | Msa1387600:intron | 15.0% |
| !! | ATGTTAATAAGAATAATCAA+GGG | - | tig0020912:122988-123007 | None:intergenic | 15.0% |
| !! | TATGTTAATAAGAATAATCA+AGG | - | tig0020912:122989-123008 | None:intergenic | 15.0% |
| !!! | ATTTTATCTTTAATATCTAC+TGG | - | tig0020912:121044-121063 | None:intergenic | 15.0% |
| !!! | TTGTTATTTTTTTTTGTCTT+GGG | + | tig0020912:124028-124047 | Msa1387600:intron | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+AGG | + | tig0020912:124089-124108 | Msa1387600:intron | 15.0% |
| !!! | TTTGTAGTTTTTTTTCTTAA+GGG | + | tig0020912:124090-124109 | Msa1387600:intron | 15.0% |
| !! | TGAGAAATTGTTATAAATAA+CGG | - | tig0020912:124199-124218 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGTTTAGATTC+TGG | + | tig0020912:124674-124693 | Msa1387600:intron | 15.0% |
| !! | AATAAAAAGTGAAATCTTAC+TGG | - | tig0020912:119938-119957 | None:intergenic | 20.0% |
| !! | TAATAAATGGTATGATAAGA+AGG | + | tig0020912:120152-120171 | Msa1387600:intron | 20.0% |
| !! | TGACTTATAATAAAATAGAG+AGG | + | tig0020912:120242-120261 | Msa1387600:intron | 20.0% |
| !!! | TAAAGTTTGTTTTTTTCTTG+AGG | + | tig0020912:120290-120309 | Msa1387600:intron | 20.0% |
| !!! | AAAATGTACTACATACTTTT+TGG | + | tig0020912:120331-120350 | Msa1387600:intron | 20.0% |
| !!! | TCTATGATTAGTCTTATTAT+TGG | + | tig0020912:120539-120558 | Msa1387600:CDS | 20.0% |
| !!! | CTATGATTAGTCTTATTATT+GGG | + | tig0020912:120540-120559 | Msa1387600:CDS | 20.0% |
| !! | TAACATAATTAGGAAGATAT+TGG | + | tig0020912:120661-120680 | Msa1387600:intron | 20.0% |
| !! | TTGAAAGTTTAAAGATAGAT+CGG | + | tig0020912:120941-120960 | Msa1387600:intron | 20.0% |
| !! | CATCACTTATTAATTTCAAA+TGG | - | tig0020912:121627-121646 | None:intergenic | 20.0% |
| !!! | CATTTGAAATTAATAAGTGA+TGG | + | tig0020912:121625-121644 | Msa1387600:intron | 20.0% |
| !! | ATTTGAAAAAAGACTTCATT+GGG | - | tig0020912:122174-122193 | None:intergenic | 20.0% |
| !! | AATTTGAAAAAAGACTTCAT+TGG | - | tig0020912:122175-122194 | None:intergenic | 20.0% |
| !!! | TTAAACTTTTGAAATATGTG+GGG | + | tig0020912:122199-122218 | Msa1387600:intron | 20.0% |
| !! | ACAAATTCAACAAAGAATTA+AGG | - | tig0020912:122467-122486 | None:intergenic | 20.0% |
| !! | GTATTAATGCCAATTAAAAT+TGG | - | tig0020912:122502-122521 | None:intergenic | 20.0% |
| !!! | GTTTTCATATACATGTAAAA+TGG | - | tig0020912:122628-122647 | None:intergenic | 20.0% |
| !! | ATAAGTTTATAATACAACTC+TGG | + | tig0020912:122681-122700 | Msa1387600:intron | 20.0% |
| !! | TAAGTTTATAATACAACTCT+GGG | + | tig0020912:122682-122701 | Msa1387600:intron | 20.0% |
| !! | TTTGATGTTGTTGTATAATT+AGG | - | tig0020912:122943-122962 | None:intergenic | 20.0% |
| !!! | GTTGATAATGTTGTTAAATT+AGG | - | tig0020912:123063-123082 | None:intergenic | 20.0% |
| !! | TTGAAAGTTTAAAGATAGAT+CGG | + | tig0020912:120941-120960 | Msa1387600:intron | 20.0% |
| !! | ATAAAAAGAAATACAGTTAG+AGG | - | tig0020912:123558-123577 | None:intergenic | 20.0% |
| !!! | TATTTCTTTTTATCTTTTCC+AGG | + | tig0020912:123565-123584 | Msa1387600:intron | 20.0% |
| !!! | TAATAGTTTTCACTTCATAT+TGG | + | tig0020912:123673-123692 | Msa1387600:intron | 20.0% |
| !!! | AACTTTATTTCATAAACTCA+AGG | + | tig0020912:123803-123822 | Msa1387600:intron | 20.0% |
| !!! | TTTTGTAGTTTTTTTCTTAC+GGG | - | tig0020912:123914-123933 | None:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTCTTA+CGG | - | tig0020912:123915-123934 | None:intergenic | 20.0% |
| !! | AGACAAAAAAAAATAACAAG+TGG | - | tig0020912:124027-124046 | None:intergenic | 20.0% |
| !!! | CTTGTTATTTTTTTTTGTCT+TGG | + | tig0020912:124027-124046 | Msa1387600:intron | 20.0% |
| !!! | TGTTATTTTTTTTTGTCTTG+GGG | + | tig0020912:124029-124048 | Msa1387600:intron | 20.0% |
| !!! | TTGTAGTTTTTTTTCTTAAG+GGG | + | tig0020912:124091-124110 | Msa1387600:intron | 20.0% |
| !! | CAATCATAATTATGTTTGTA+TGG | - | tig0020912:124292-124311 | None:intergenic | 20.0% |
| !!! | TCAAAACTGACAATATTTTT+AGG | - | tig0020912:124369-124388 | None:intergenic | 20.0% |
| !! | CCATTATCATTAATACAAAA+TGG | - | tig0020912:124459-124478 | None:intergenic | 20.0% |
| !!! | CCATTTTGTATTAATGATAA+TGG | + | tig0020912:124456-124475 | Msa1387600:intron | 20.0% |
| !! | GACATAAGAAAAAATGATTT+CGG | - | tig0020912:124642-124661 | None:intergenic | 20.0% |
| !!! | AATTTGACTTTGTAATTGAA+AGG | - | tig0020912:124821-124840 | None:intergenic | 20.0% |
| !! | TGTTATAAACTGTTAGTATA+TGG | - | tig0020912:125004-125023 | None:intergenic | 20.0% |
| !!! | CGATCCAAATTCTTATTTTA+GGG | - | tig0020912:120357-120376 | None:intergenic | 25.0% |
| !!! | ACGATCCAAATTCTTATTTT+AGG | - | tig0020912:120358-120377 | None:intergenic | 25.0% |
| !!! | ATTGTTTTGGGTAGTTTTAT+TGG | + | tig0020912:120458-120477 | Msa1387600:CDS | 25.0% |
| !!! | ATCATGCTAGTTTTTACTAT+AGG | + | tig0020912:120633-120652 | Msa1387600:intron | 25.0% |
| ! | ATAGGTTGTGTAACATAATT+AGG | + | tig0020912:120651-120670 | Msa1387600:intron | 25.0% |
| !! | TACTGGCAATTTACATTTTA+AGG | - | tig0020912:121027-121046 | None:intergenic | 25.0% |
| !! | TTTTCTTCAACCTTAAATTG+AGG | + | tig0020912:121148-121167 | Msa1387600:intron | 25.0% |
| ! | AAATAAATTGTGTACATCGA+GGG | + | tig0020912:121587-121606 | Msa1387600:intron | 25.0% |
| ! | AATGAATTTCATATCCCTTA+TGG | + | tig0020912:121829-121848 | Msa1387600:intron | 25.0% |
| ! | ATGAATTTCATATCCCTTAT+GGG | + | tig0020912:121830-121849 | Msa1387600:intron | 25.0% |
| !! | TAACATACATCAAGTGATTT+TGG | + | tig0020912:122040-122059 | Msa1387600:intron | 25.0% |
| !!! | TAAACTTTTGAAATATGTGG+GGG | + | tig0020912:122200-122219 | Msa1387600:intron | 25.0% |
| ! | AAATCCAATATATGACCAAA+GGG | - | tig0020912:122342-122361 | None:intergenic | 25.0% |
| !!! | ACATAACTGCCAATTTTAAT+TGG | + | tig0020912:122490-122509 | Msa1387600:intron | 25.0% |
| !!! | GTTTTATTGATGAAAAAGGA+CGG | + | tig0020912:122525-122544 | Msa1387600:intron | 25.0% |
| !! | AGAAGAGAGCATATTTATAT+AGG | - | tig0020912:122661-122680 | None:intergenic | 25.0% |
| !! | ACTAGCAAGAATATATTTTC+AGG | - | tig0020912:122718-122737 | None:intergenic | 25.0% |
| !! | ACAAATCTTGAAAGTTGATT+CGG | + | tig0020912:122867-122886 | Msa1387600:intron | 25.0% |
| !! | ATTGCTTATTGTTCTCTTTT+TGG | + | tig0020912:123472-123491 | Msa1387600:CDS | 25.0% |
| !! | TTGCTTATTGTTCTCTTTTT+GGG | + | tig0020912:123473-123492 | Msa1387600:CDS | 25.0% |
| ! | GGAAAAAACAGTTGAATTAA+TGG | - | tig0020912:123503-123522 | None:intergenic | 25.0% |
| !! | TCAACTAAAGCATTCTTTAA+AGG | + | tig0020912:123592-123611 | Msa1387600:CDS | 25.0% |
| !! | CAACTAAAGCATTCTTTAAA+GGG | + | tig0020912:123593-123612 | Msa1387600:CDS | 25.0% |
| !! | AACTAAAGCATTCTTTAAAG+GGG | + | tig0020912:123594-123613 | Msa1387600:CDS | 25.0% |
| ! | TAAGGAAACCATAATGAAAA+AGG | + | tig0020912:123630-123649 | Msa1387600:CDS | 25.0% |
| !!! | AAAAGAGACCTTTTTCATTA+TGG | - | tig0020912:123641-123660 | None:intergenic | 25.0% |
| !!! | CCAGTATAGTTTTAAATGTA+CGG | + | tig0020912:123700-123719 | Msa1387600:intron | 25.0% |
| !!! | GTTATTTTTTTTTGTCTTGG+GGG | + | tig0020912:124030-124049 | Msa1387600:intron | 25.0% |
| !!! | TTATTTTTTTTTGTCTTGGG+GGG | + | tig0020912:124031-124050 | Msa1387600:intron | 25.0% |
| !!! | CAAATAGTCATTTTACAACT+AGG | - | tig0020912:124171-124190 | None:intergenic | 25.0% |
| ! | GAAATTGTTATAAATAACGG+TGG | - | tig0020912:124196-124215 | None:intergenic | 25.0% |
| ! | CAATTAGTTAGTCATAACTT+TGG | - | tig0020912:124514-124533 | None:intergenic | 25.0% |
| ! | ACTTCTTACAGGTAATAATT+TGG | + | tig0020912:125109-125128 | Msa1387600:intron | 25.0% |
| ! | AGCAAAAATTGAGTGATAAT+AGG | - | tig0020912:125136-125155 | None:intergenic | 25.0% |
| !! | AACACAATAGATGATTAGTT+GGG | - | tig0020912:125341-125360 | None:intergenic | 25.0% |
| ! | TAACACAATAGATGATTAGT+TGG | - | tig0020912:125342-125361 | None:intergenic | 25.0% |
| TTGGCCCTAAAATAAGAATT+TGG | + | tig0020912:120350-120369 | Msa1387600:intron | 30.0% | |
| !!! | AACTGGCTGTATTTTTTATG+TGG | + | tig0020912:120388-120407 | Msa1387600:intron | 30.0% |
| ! | GTTTACTATTGTTGTTATGC+AGG | + | tig0020912:120415-120434 | Msa1387600:intron | 30.0% |
| ! | TATTGTTGTTATGCAGGAAA+TGG | + | tig0020912:120421-120440 | Msa1387600:intron | 30.0% |
| TTATGCAGGAAATGGAATTT+GGG | + | tig0020912:120429-120448 | Msa1387600:intron | 30.0% | |
| !!! | GGTAGTTTTATTGGTTTTTG+TGG | + | tig0020912:120467-120486 | Msa1387600:CDS | 30.0% |
| !!! | AGTTTTATTGGTTTTTGTGG+AGG | + | tig0020912:120470-120489 | Msa1387600:CDS | 30.0% |
| GTTTGATCCTAAATCATCTA+CGG | + | tig0020912:120562-120581 | Msa1387600:CDS | 30.0% | |
| !!! | TTTACATTTTAAGGTGCGTT+TGG | - | tig0020912:121018-121037 | None:intergenic | 30.0% |
| ! | GCCAATTATTGACTATGATT+TGG | + | tig0020912:121188-121207 | Msa1387600:intron | 30.0% |
| GCCAAATCATAGTCAATAAT+TGG | - | tig0020912:121192-121211 | None:intergenic | 30.0% | |
| ! | ACTATGATTTGGCATAAATC+TGG | + | tig0020912:121223-121242 | Msa1387600:intron | 30.0% |
| ACAATTTATTTCATCCCAAG+GGG | - | tig0020912:121578-121597 | None:intergenic | 30.0% | |
| CACAATTTATTTCATCCCAA+GGG | - | tig0020912:121579-121598 | None:intergenic | 30.0% | |
| ACACAATTTATTTCATCCCA+AGG | - | tig0020912:121580-121599 | None:intergenic | 30.0% | |
| GAAATAAATTGTGTACATCG+AGG | + | tig0020912:121586-121605 | Msa1387600:intron | 30.0% | |
| AATAAATTGTGTACATCGAG+GGG | + | tig0020912:121588-121607 | Msa1387600:intron | 30.0% | |
| AATCACTTGATGTATGTTAG+CGG | - | tig0020912:122039-122058 | None:intergenic | 30.0% | |
| TACTTAACACACAGTGAAAT+TGG | - | tig0020912:122084-122103 | None:intergenic | 30.0% | |
| AATCCAATATATGACCAAAG+GGG | - | tig0020912:122341-122360 | None:intergenic | 30.0% | |
| CAAATCCAATATATGACCAA+AGG | - | tig0020912:122343-122362 | None:intergenic | 30.0% | |
| !! | CTGCGTTTTATTGATGAAAA+AGG | + | tig0020912:122521-122540 | Msa1387600:intron | 30.0% |
| AGAATGATCTGTTAAATCCT+GGG | + | tig0020912:122761-122780 | Msa1387600:intron | 30.0% | |
| TACTGGCAATTTACATCTTA+AGG | - | tig0020912:123203-123222 | None:intergenic | 30.0% | |
| ! | TTTTCTTCAACCTTAAACTG+AGG | + | tig0020912:123324-123343 | Msa1387600:CDS | 30.0% |
| ! | GCCAATTATTGACTATGATT+TGG | + | tig0020912:121188-121207 | Msa1387600:intron | 30.0% |
| GCCAAATCATAGTCAATAAT+TGG | - | tig0020912:121192-121211 | None:intergenic | 30.0% | |
| GCAACGTTATATTTCCTAAT+TGG | + | tig0020912:123438-123457 | Msa1387600:CDS | 30.0% | |
| AATATAGTCACAAGCCAATT+AGG | - | tig0020912:123455-123474 | None:intergenic | 30.0% | |
| !!! | TTCAACTGTTTTTTCCAGTT+TGG | + | tig0020912:123507-123526 | Msa1387600:intron | 30.0% |
| ! | CCGTACATTTAAAACTATAC+TGG | - | tig0020912:123703-123722 | None:intergenic | 30.0% |
| !!! | TGTACGGAGAAAATGTTTTT+TGG | + | tig0020912:123716-123735 | Msa1387600:intron | 30.0% |
| TTAAGCCTTACAACTATCTT+AGG | - | tig0020912:123847-123866 | None:intergenic | 30.0% | |
| CCTCAAAGACAATTGTAAAA+TGG | - | tig0020912:124783-124802 | None:intergenic | 30.0% | |
| ! | CCATTTTACAATTGTCTTTG+AGG | + | tig0020912:124780-124799 | Msa1387600:intron | 30.0% |
| ACCTCATAAACGTAACAATA+TGG | + | tig0020912:124858-124877 | Msa1387600:intron | 30.0% | |
| ACCATATTGTTACGTTTATG+AGG | - | tig0020912:124862-124881 | None:intergenic | 30.0% | |
| ! | GTAACAATATGGTGATTTGT+AGG | + | tig0020912:124869-124888 | Msa1387600:intron | 30.0% |
| TGCTGTCAATAGAAAAACAT+TGG | - | tig0020912:125048-125067 | None:intergenic | 30.0% | |
| !! | AAAAAAGCATTAGCTTCCAT+AGG | + | tig0020912:125289-125308 | Msa1387600:CDS | 30.0% |
| GGATCGTCTTATATTTGAAC+TGG | + | tig0020912:120371-120390 | Msa1387600:intron | 35.0% | |
| GTTATGCAGGAAATGGAATT+TGG | + | tig0020912:120428-120447 | Msa1387600:intron | 35.0% | |
| GAGATGCAGTAACTAAACAT+TGG | + | tig0020912:120765-120784 | Msa1387600:intron | 35.0% | |
| CTCATAAGCGCATATGTATA+AGG | + | tig0020912:120822-120841 | Msa1387600:intron | 35.0% | |
| ! | TTTTCTGTTTGCTTCAGGTA+TGG | + | tig0020912:121101-121120 | Msa1387600:intron | 35.0% |
| AAGCAACAACACTATCAATG+TGG | - | tig0020912:121386-121405 | None:intergenic | 35.0% | |
| TCCCATGAATAAGGTTCATA+TGG | + | tig0020912:121672-121691 | Msa1387600:intron | 35.0% | |
| CCCATATGAACCTTATTCAT+GGG | - | tig0020912:121676-121695 | None:intergenic | 35.0% | |
| CCCATGAATAAGGTTCATAT+GGG | + | tig0020912:121673-121692 | Msa1387600:intron | 35.0% | |
| ACCCATATGAACCTTATTCA+TGG | - | tig0020912:121677-121696 | None:intergenic | 35.0% | |
| AATTTCATATCCCTTATGGG+TGG | + | tig0020912:121833-121852 | Msa1387600:intron | 35.0% | |
| AAATCATACACCACCCATAA+GGG | - | tig0020912:121846-121865 | None:intergenic | 35.0% | |
| AAGTACTATCATTCTAGCAC+TGG | + | tig0020912:122099-122118 | Msa1387600:intron | 35.0% | |
| TGTGCTCAAAGAAATCAAGT+GGG | - | tig0020912:122381-122400 | None:intergenic | 35.0% | |
| ATGTGCTCAAAGAAATCAAG+TGG | - | tig0020912:122382-122401 | None:intergenic | 35.0% | |
| TCCTTCAATTTACCAAGTCA+AGG | + | tig0020912:122409-122428 | Msa1387600:intron | 35.0% | |
| CCTTCAATTTACCAAGTCAA+GGG | + | tig0020912:122410-122429 | Msa1387600:intron | 35.0% | |
| TCCAGTCTCTAATGATATGA+GGG | - | tig0020912:122583-122602 | None:intergenic | 35.0% | |
| TTAACAGATCATTCTCGATG+TGG | - | tig0020912:122756-122775 | None:intergenic | 35.0% | |
| GAGAATGATCTGTTAAATCC+TGG | + | tig0020912:122760-122779 | Msa1387600:intron | 35.0% | |
| GAATGATCTGTTAAATCCTG+GGG | + | tig0020912:122762-122781 | Msa1387600:intron | 35.0% | |
| AATGATCTGTTAAATCCTGG+GGG | + | tig0020912:122763-122782 | Msa1387600:intron | 35.0% | |
| ! | AGATGTTGATAGAGTTGTGT+CGG | + | tig0020912:122914-122933 | Msa1387600:intron | 35.0% |
| TTTACATCTTAAGGTGCGTT+TGG | - | tig0020912:123194-123213 | None:intergenic | 35.0% | |
| ! | TTTTCTGTTTGCTTCAGGTA+TGG | + | tig0020912:121101-121120 | Msa1387600:intron | 35.0% |
| ATTCAACCTATGCTTATGCT+TGG | + | tig0020912:123395-123414 | Msa1387600:CDS | 35.0% | |
| AGAAAACAAGAATGCCAAAC+TGG | - | tig0020912:123524-123543 | None:intergenic | 35.0% | |
| ! | AATGCTTTAGTTGATATGCC+TGG | - | tig0020912:123586-123605 | None:intergenic | 35.0% |
| AAACAAACACTTCTTGGAGA+TGG | - | tig0020912:123776-123795 | None:intergenic | 35.0% | |
| !! | TCCAAGAAGTGTTTGTTTAG+TGG | + | tig0020912:123778-123797 | Msa1387600:intron | 35.0% |
| ACCACTAAACAAACACTTCT+TGG | - | tig0020912:123782-123801 | None:intergenic | 35.0% | |
| TTTCATAAACTCAAGGAGCA+TGG | + | tig0020912:123810-123829 | Msa1387600:intron | 35.0% | |
| ! | TCGCAACTTTGGAAAAGTTA+GGG | - | tig0020912:123884-123903 | None:intergenic | 35.0% |
| ! | ATCGCAACTTTGGAAAAGTT+AGG | - | tig0020912:123885-123904 | None:intergenic | 35.0% |
| ! | CTTTTCCAAAGTTGCGATTT+TGG | + | tig0020912:123887-123906 | Msa1387600:intron | 35.0% |
| CTACAGTTGCAAAACTTAGA+GGG | + | tig0020912:124063-124082 | Msa1387600:intron | 35.0% | |
| AGCCTGTCTTGATTAATTCT+AGG | + | tig0020912:124538-124557 | Msa1387600:intron | 35.0% | |
| CTCCTAGAATTAATCAAGAC+AGG | - | tig0020912:124543-124562 | None:intergenic | 35.0% | |
| CTGTCTTGATTAATTCTAGG+AGG | + | tig0020912:124541-124560 | Msa1387600:intron | 35.0% | |
| AAAAGACGAGGTACATAAAG+TGG | + | tig0020912:124748-124767 | Msa1387600:intron | 35.0% | |
| TGGAACTTCTAGCATTTGTT+TGG | + | tig0020912:124915-124934 | Msa1387600:intron | 35.0% | |
| GGAACTTCTAGCATTTGTTT+GGG | + | tig0020912:124916-124935 | Msa1387600:intron | 35.0% | |
| TACATGTTCAACAGCGTATT+GGG | + | tig0020912:125080-125099 | Msa1387600:intron | 35.0% | |
| !! | TTGGGTATTGAACTTCTTAC+AGG | + | tig0020912:125098-125117 | Msa1387600:intron | 35.0% |
| TGCAGATTCCAATCTCATTT+GGG | + | tig0020912:125230-125249 | Msa1387600:intron | 35.0% | |
| ! | ATTTGGGGTAACTGTATATG+AGG | + | tig0020912:125246-125265 | Msa1387600:CDS | 35.0% |
| TAGCTGTAAATTCTTTCCCT+TGG | - | tig0020912:125318-125337 | None:intergenic | 35.0% | |
| ! | CTATTGTGTTATTGCCTTAC+TGG | + | tig0020912:125351-125370 | Msa1387600:CDS | 35.0% |
| ! | ATTTGGGTGGCGAATTGTTT+TGG | + | tig0020912:120445-120464 | Msa1387600:CDS | 40.0% |
| ! | TTTGGGTGGCGAATTGTTTT+GGG | + | tig0020912:120446-120465 | Msa1387600:CDS | 40.0% |
| GAGATAGCCGTAGATGATTT+AGG | - | tig0020912:120572-120591 | None:intergenic | 40.0% | |
| ACTAATCACTATTGCAGTGC+TGG | - | tig0020912:120915-120934 | None:intergenic | 40.0% | |
| ! | TACGGTTTTCTGTTTGCTTC+AGG | + | tig0020912:121096-121115 | Msa1387600:intron | 40.0% |
| AGGTAGGATGCCTCAATTTA+AGG | - | tig0020912:121161-121180 | None:intergenic | 40.0% | |
| ! | TAAATTGAGGCATCCTACCT+TGG | + | tig0020912:121161-121180 | Msa1387600:intron | 40.0% |
| ATAATTGGCATGTCCAAGGT+AGG | - | tig0020912:121177-121196 | None:intergenic | 40.0% | |
| GTCAATAATTGGCATGTCCA+AGG | - | tig0020912:121181-121200 | None:intergenic | 40.0% | |
| AGCTACTAAACAAAACCCCT+TGG | + | tig0020912:121560-121579 | Msa1387600:intron | 40.0% | |
| GCTACTAAACAAAACCCCTT+GGG | + | tig0020912:121561-121580 | Msa1387600:intron | 40.0% | |
| GATCTCCAATCACAAAGGTT+GGG | - | tig0020912:121654-121673 | None:intergenic | 40.0% | |
| GATTGGAGATCCCATGAATA+AGG | + | tig0020912:121663-121682 | Msa1387600:intron | 40.0% | |
| CTAGACACTGCATTATTGAG+AGG | + | tig0020912:121787-121806 | Msa1387600:intron | 40.0% | |
| CAAATCATACACCACCCATA+AGG | - | tig0020912:121847-121866 | None:intergenic | 40.0% | |
| GAGCACTCATGAAATAATCC+AGG | + | tig0020912:121942-121961 | Msa1387600:intron | 40.0% | |
| ACTTCATTGGGTTAACATCC+TGG | - | tig0020912:122162-122181 | None:intergenic | 40.0% | |
| CAATATATGACCAAAGGGGT+TGG | - | tig0020912:122337-122356 | None:intergenic | 40.0% | |
| CAACCCCTTTGGTCATATAT+TGG | + | tig0020912:122335-122354 | Msa1387600:intron | 40.0% | |
| !! | CCCTTGACTTGGTAAATTGA+AGG | - | tig0020912:122413-122432 | None:intergenic | 40.0% |
| CCAGTCTCTAATGATATGAG+GGG | - | tig0020912:122582-122601 | None:intergenic | 40.0% | |
| GTCCAGTCTCTAATGATATG+AGG | - | tig0020912:122584-122603 | None:intergenic | 40.0% | |
| ATGATCTGTTAAATCCTGGG+GGG | + | tig0020912:122764-122783 | Msa1387600:intron | 40.0% | |
| AACTACGCGGAAAATCCTTA+AGG | + | tig0020912:122796-122815 | Msa1387600:intron | 40.0% | |
| !! | TTGAAAGTTGATTCGGTAGC+AGG | + | tig0020912:122874-122893 | Msa1387600:intron | 40.0% |
| ATTCGGTAGCAGGTTTGATT+TGG | + | tig0020912:122884-122903 | Msa1387600:intron | 40.0% | |
| ACTAATCACTATTGCAGTGC+TGG | - | tig0020912:120915-120934 | None:intergenic | 40.0% | |
| ! | TACGGTTTTCTGTTTGCTTC+AGG | + | tig0020912:121096-121115 | Msa1387600:intron | 40.0% |
| TTTGCTTCAGGTATGGTCAT+GGG | + | tig0020912:123284-123303 | Msa1387600:intron | 40.0% | |
| ATAATTGGCATGTCCAAGGT+AGG | - | tig0020912:121177-121196 | None:intergenic | 40.0% | |
| GTCAATAATTGGCATGTCCA+AGG | - | tig0020912:121181-121200 | None:intergenic | 40.0% | |
| CTGATTCCAAGCATAAGCAT+AGG | - | tig0020912:123404-123423 | None:intergenic | 40.0% | |
| CTTATGCTTGGAATCAGCAT+TGG | + | tig0020912:123407-123426 | Msa1387600:CDS | 40.0% | |
| ! | TCTTTAAAGGGGTTGAGACA+TGG | + | tig0020912:123605-123624 | Msa1387600:CDS | 40.0% |
| TCCTGCCTAAGATAGTTGTA+AGG | + | tig0020912:123839-123858 | Msa1387600:intron | 40.0% | |
| ! | GCAACTTTGGAAAAGTTAGG+GGG | - | tig0020912:123882-123901 | None:intergenic | 40.0% |
| ! | CGCAACTTTGGAAAAGTTAG+GGG | - | tig0020912:123883-123902 | None:intergenic | 40.0% |
| TGCCACATGTGCAAAACTTT+GGG | - | tig0020912:123942-123961 | None:intergenic | 40.0% | |
| ! | TTTTGCACATGTGGCAGTTT+TGG | + | tig0020912:123946-123965 | Msa1387600:intron | 40.0% |
| AACAAGTGGCACCTTACTTA+GGG | - | tig0020912:124013-124032 | None:intergenic | 40.0% | |
| TAACAAGTGGCACCTTACTT+AGG | - | tig0020912:124014-124033 | None:intergenic | 40.0% | |
| GCTACAGTTGCAAAACTTAG+AGG | + | tig0020912:124062-124081 | Msa1387600:intron | 40.0% | |
| ! | CTTTCACGAAGTTGCGATTT+TGG | - | tig0020912:124117-124136 | None:intergenic | 40.0% |
| ATCGCAACTTCGTGAAAGTT+AGG | + | tig0020912:124119-124138 | Msa1387600:intron | 40.0% | |
| TCGCAACTTCGTGAAAGTTA+GGG | + | tig0020912:124120-124139 | Msa1387600:intron | 40.0% | |
| ! | ACCAATTGTTTCTTGTCTCC+TGG | - | tig0020912:124570-124589 | None:intergenic | 40.0% |
| GAATACAAACCTCTTCCAAC+TGG | + | tig0020912:124707-124726 | Msa1387600:intron | 40.0% | |
| !!! | TCTTTTTCAGTGGCACCATT+TGG | - | tig0020912:124734-124753 | None:intergenic | 40.0% |
| !!! | ATGTACCTCGTCTTTTTCAG+TGG | - | tig0020912:124744-124763 | None:intergenic | 40.0% |
| CATTGCAGTACAGATTGCTA+AGG | + | tig0020912:124946-124965 | Msa1387600:intron | 40.0% | |
| CTACATGTTCAACAGCGTAT+TGG | + | tig0020912:125079-125098 | Msa1387600:intron | 40.0% | |
| GTGCAGATTCCAATCTCATT+TGG | + | tig0020912:125229-125248 | Msa1387600:intron | 40.0% | |
| GCAGATTCCAATCTCATTTG+GGG | + | tig0020912:125231-125250 | Msa1387600:intron | 40.0% | |
| ACAGTTACCCCAAATGAGAT+TGG | - | tig0020912:125241-125260 | None:intergenic | 40.0% | |
| AGGCAACTGCATTATTCACA+GGG | + | tig0020912:125266-125285 | Msa1387600:CDS | 40.0% | |
| TGCAGGAAATGGAATTTGGG+TGG | + | tig0020912:120432-120451 | Msa1387600:intron | 45.0% | |
| !! | TTTGGAAGCGTTGGTGGTAT+TGG | + | tig0020912:120497-120516 | Msa1387600:CDS | 45.0% |
| GTTTGCTTCAGGTATGGTCA+CGG | + | tig0020912:121107-121126 | Msa1387600:intron | 45.0% | |
| TTTGCTTCAGGTATGGTCAC+GGG | + | tig0020912:121108-121127 | Msa1387600:intron | 45.0% | |
| ATTGTGTACATCGAGGGGAT+TGG | + | tig0020912:121593-121612 | Msa1387600:intron | 45.0% | |
| TTGTGTACATCGAGGGGATT+GGG | + | tig0020912:121594-121613 | Msa1387600:intron | 45.0% | |
| GGATCTCCAATCACAAAGGT+TGG | - | tig0020912:121655-121674 | None:intergenic | 45.0% | |
| CATGGGATCTCCAATCACAA+AGG | - | tig0020912:121659-121678 | None:intergenic | 45.0% | |
| TTGTTCTCGTCCCTTTCCTA+TGG | + | tig0020912:121749-121768 | Msa1387600:intron | 45.0% | |
| CTCACACACACCATAGGAAA+GGG | - | tig0020912:121762-121781 | None:intergenic | 45.0% | |
| TCTCACACACACCATAGGAA+AGG | - | tig0020912:121763-121782 | None:intergenic | 45.0% | |
| TCACCTATGTGAGTGTCAAG+TGG | + | tig0020912:121886-121905 | Msa1387600:intron | 45.0% | |
| CACCTATGTGAGTGTCAAGT+GGG | + | tig0020912:121887-121906 | Msa1387600:intron | 45.0% | |
| ACCTATGTGAGTGTCAAGTG+GGG | + | tig0020912:121888-121907 | Msa1387600:intron | 45.0% | |
| CTGGATGTGATGCATCAAAC+TGG | - | tig0020912:122143-122162 | None:intergenic | 45.0% | |
| CAGTTTGATGCATCACATCC+AGG | + | tig0020912:122141-122160 | Msa1387600:intron | 45.0% | |
| CCCCTCATATCATTAGAGAC+TGG | + | tig0020912:122579-122598 | Msa1387600:intron | 45.0% | |
| TCATTCTCGATGTGGAATCG+AGG | - | tig0020912:122748-122767 | None:intergenic | 45.0% | |
| GTTTGCTTCAGGTATGGTCA+TGG | + | tig0020912:121107-121126 | Msa1387600:intron | 45.0% | |
| AGGTAGGATGCCTCAGTTTA+AGG | - | tig0020912:123337-123356 | None:intergenic | 45.0% | |
| ! | TAAACTGAGGCATCCTACCT+TGG | + | tig0020912:123337-123356 | Msa1387600:CDS | 45.0% |
| AGGGGTTGAGACATGGAATA+AGG | + | tig0020912:123612-123631 | Msa1387600:CDS | 45.0% | |
| TCGATCAACTCAAAGACACG+TGG | - | tig0020912:123753-123772 | None:intergenic | 45.0% | |
| GCCTTACAACTATCTTAGGC+AGG | - | tig0020912:123843-123862 | None:intergenic | 45.0% | |
| CCACATGTGCAAAACTTTGG+GGG | - | tig0020912:123940-123959 | None:intergenic | 45.0% | |
| GCCACATGTGCAAAACTTTG+GGG | - | tig0020912:123941-123960 | None:intergenic | 45.0% | |
| CTGCCACATGTGCAAAACTT+TGG | - | tig0020912:123943-123962 | None:intergenic | 45.0% | |
| ACCGGGTCAAAATTGGCATT+GGG | - | tig0020912:123974-123993 | None:intergenic | 45.0% | |
| CAGTTGCAAAACTTAGAGGG+CGG | + | tig0020912:124066-124085 | Msa1387600:intron | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+GGG | + | tig0020912:124121-124140 | Msa1387600:intron | 45.0% | |
| GCAACTTCGTGAAAGTTAGG+GGG | + | tig0020912:124122-124141 | Msa1387600:intron | 45.0% | |
| ! | ATTAATTCTAGGAGGCTGCC+AGG | + | tig0020912:124549-124568 | Msa1387600:intron | 45.0% |
| GCCAGGAGACAAGAAACAAT+TGG | + | tig0020912:124566-124585 | Msa1387600:intron | 45.0% | |
| GAGGCAACTGCATTATTCAC+AGG | + | tig0020912:125265-125284 | Msa1387600:CDS | 45.0% | |
| ! | TGTGTTATTGCCTTACTGGC+TGG | + | tig0020912:125355-125374 | Msa1387600:CDS | 45.0% |
| !! | AATATTAGATAAAATATTTA+CGG | + | tig0020912:121078-121097 | Msa1387600:intron | 5.0% |
| !! | AATATTAGATAAAATATTTA+CGG | + | tig0020912:121078-121097 | Msa1387600:intron | 5.0% |
| !!! | TTTTAAAAAAAAAAATATTG+GGG | - | tig0020912:124224-124243 | None:intergenic | 5.0% |
| !!! | CTTTTTAAAAAAAAAAATAT+TGG | - | tig0020912:124226-124245 | None:intergenic | 5.0% |
| !!! | GGTTTTTGTGGAGGAGCGTT+TGG | + | tig0020912:120479-120498 | Msa1387600:CDS | 50.0% |
| !! | CACTATTGCAGTGCTGGTTG+AGG | - | tig0020912:120909-120928 | None:intergenic | 50.0% |
| GGGAACCCAACCTTTGTGAT+TGG | + | tig0020912:121646-121665 | Msa1387600:intron | 50.0% | |
| GCACTTCTCACACACACCAT+AGG | - | tig0020912:121768-121787 | None:intergenic | 50.0% | |
| TCGCCAAGATCCCATACAAG+CGG | - | tig0020912:121914-121933 | None:intergenic | 50.0% | |
| TGGGATCTTGGCGAAATCTC+TGG | + | tig0020912:121920-121939 | Msa1387600:intron | 50.0% | |
| AAATAATCCAGGCACGCGCA+CGG | + | tig0020912:121953-121972 | Msa1387600:intron | 50.0% | |
| TAGACATGGTCCAACCCCTT+TGG | + | tig0020912:122324-122343 | Msa1387600:intron | 50.0% | |
| CACGTGTACATCCCTTGACT+TGG | - | tig0020912:122424-122443 | None:intergenic | 50.0% | |
| TAGTTATACGCTAACCCCCC+AGG | - | tig0020912:122781-122800 | None:intergenic | 50.0% | |
| ! | GGGGTTAGCGTATAACTACG+CGG | + | tig0020912:122783-122802 | Msa1387600:intron | 50.0% |
| TGCTGATCGCACTGTCCTTA+AGG | - | tig0020912:122814-122833 | None:intergenic | 50.0% | |
| !! | CACTATTGCAGTGCTGGTTG+AGG | - | tig0020912:120909-120928 | None:intergenic | 50.0% |
| TATGGTCATGGGTGTGTCTC+TGG | + | tig0020912:123295-123314 | Msa1387600:CDS | 50.0% | |
| CGGGACCAAAATCGCAACTT+TGG | - | tig0020912:123895-123914 | None:intergenic | 50.0% | |
| ! | CATGTGCAAAACTTTGGGGG+CGG | - | tig0020912:123937-123956 | None:intergenic | 50.0% |
| ! | CCCCCAAAGTTTTGCACATG+TGG | + | tig0020912:123937-123956 | Msa1387600:intron | 50.0% |
| ! | CGGGTCAAAATTGGCATTGG+GGG | - | tig0020912:123972-123991 | None:intergenic | 50.0% |
| CCGGGTCAAAATTGGCATTG+GGG | - | tig0020912:123973-123992 | None:intergenic | 50.0% | |
| !! | CCCCAATGCCAATTTTGACC+CGG | + | tig0020912:123970-123989 | Msa1387600:intron | 50.0% |
| GACCGGGTCAAAATTGGCAT+TGG | - | tig0020912:123975-123994 | None:intergenic | 50.0% | |
| AGCGTAGACCGGGTCAAAAT+TGG | - | tig0020912:123981-124000 | None:intergenic | 50.0% | |
| CCATTTGGTCCAGTTGGAAG+AGG | - | tig0020912:124719-124738 | None:intergenic | 50.0% | |
| CCTCTTCCAACTGGACCAAA+TGG | + | tig0020912:124716-124735 | Msa1387600:intron | 50.0% | |
| !! | TGGTGCCACTGAAAAAGACG+AGG | + | tig0020912:124736-124755 | Msa1387600:intron | 50.0% |
| TTAGCTTCCATAGGCGACCA+AGG | + | tig0020912:125298-125317 | Msa1387600:CDS | 50.0% | |
| TAGCTTCCATAGGCGACCAA+GGG | + | tig0020912:125299-125318 | Msa1387600:CDS | 50.0% | |
| TTCTTTCCCTTGGTCGCCTA+TGG | - | tig0020912:125308-125327 | None:intergenic | 50.0% | |
| ! | ACTAGGAGGCGGATTCATGT+TGG | + | tig0020912:125399-125418 | Msa1387600:CDS | 50.0% |
| !!! | CATGTTGGCTCCGCTTTTTC+TGG | + | tig0020912:125414-125433 | Msa1387600:CDS | 50.0% |
| ACTCCGAGCTCCAGAAAAAG+CGG | - | tig0020912:125427-125446 | None:intergenic | 50.0% | |
| GATCCGGTTATCAGCACGTG+TGG | + | tig0020912:119912-119931 | Msa1387600:intron | 55.0% | |
| ! | TGGCCACACGTGCTGATAAC+CGG | - | tig0020912:119918-119937 | None:intergenic | 55.0% |
| !! | GGAAGCGTTGGTGGTATTGG+TGG | + | tig0020912:120500-120519 | Msa1387600:CDS | 55.0% |
| !! | AGCGTTGGTGGTATTGGTGG+TGG | + | tig0020912:120503-120522 | Msa1387600:CDS | 55.0% |
| !! | GTTGGTGGTATTGGTGGTGG+TGG | + | tig0020912:120506-120525 | Msa1387600:CDS | 55.0% |
| TATGGTCACGGGTGTGTCTC+TGG | + | tig0020912:121119-121138 | Msa1387600:intron | 55.0% | |
| GCCCCACTTGACACTCACAT+AGG | - | tig0020912:121892-121911 | None:intergenic | 55.0% | |
| TCAAGTGGGGCCGCTTGTAT+GGG | + | tig0020912:121901-121920 | Msa1387600:intron | 55.0% | |
| AATTCTTGCCGTTGGCGCTG+TGG | - | tig0020912:121991-122010 | None:intergenic | 55.0% | |
| AGCGCCAACGGCAAGAATTG+TGG | + | tig0020912:121992-122011 | Msa1387600:intron | 55.0% | |
| GCGCCAACGGCAAGAATTGT+GGG | + | tig0020912:121993-122012 | Msa1387600:intron | 55.0% | |
| CGCCAACGGCAAGAATTGTG+GGG | + | tig0020912:121994-122013 | Msa1387600:intron | 55.0% | |
| GCCAACGGCAAGAATTGTGG+GGG | + | tig0020912:121995-122014 | Msa1387600:intron | 55.0% | |
| ACCCCCACAATTCTTGCCGT+TGG | - | tig0020912:121999-122018 | None:intergenic | 55.0% | |
| ! | TTGTGGGGGTGTGATGCGAA+TGG | + | tig0020912:122009-122028 | Msa1387600:intron | 55.0% |
| CTGACGTGGCACCCTAAGTA+AGG | + | tig0020912:123999-124018 | Msa1387600:intron | 55.0% | |
| GTGGCACCATTTGGTCCAGT+TGG | - | tig0020912:124725-124744 | None:intergenic | 55.0% | |
| !! | TGGCGTACTCGGTGGATTGT+TGG | + | tig0020912:125375-125394 | Msa1387600:CDS | 55.0% |
| !! | GGCGTACTCGGTGGATTGTT+GGG | + | tig0020912:125376-125395 | Msa1387600:CDS | 55.0% |
| !! | CTCGGTGGATTGTTGGGACT+AGG | + | tig0020912:125382-125401 | Msa1387600:CDS | 55.0% |
| !! | GGTGGATTGTTGGGACTAGG+AGG | + | tig0020912:125385-125404 | Msa1387600:CDS | 55.0% |
| GGATTGTTGGGACTAGGAGG+CGG | + | tig0020912:125388-125407 | Msa1387600:CDS | 55.0% | |
| !!! | GCTCCGCTTTTTCTGGAGCT+CGG | + | tig0020912:125421-125440 | Msa1387600:CDS | 55.0% |
| !! | GGAGGAGCGTTTGGAAGCGT+TGG | + | tig0020912:120488-120507 | Msa1387600:CDS | 60.0% |
| !! | GGAGCGTTTGGAAGCGTTGG+TGG | + | tig0020912:120491-120510 | Msa1387600:CDS | 60.0% |
| GTCAAGTGGGGCCGCTTGTA+TGG | + | tig0020912:121900-121919 | Msa1387600:intron | 60.0% | |
| GGGCCGCTTGTATGGGATCT+TGG | + | tig0020912:121908-121927 | Msa1387600:intron | 60.0% | |
| TGGCGCTGTGGTGCTCGAAT+AGG | - | tig0020912:121979-121998 | None:intergenic | 60.0% | |
| TTCGAGCACCACAGCGCCAA+CGG | + | tig0020912:121980-121999 | Msa1387600:intron | 60.0% | |
| ! | GCCTTACTGGCTGGCGTACT+CGG | + | tig0020912:125364-125383 | Msa1387600:CDS | 60.0% |
| ACCGAGTACGCCAGCCAGTA+AGG | - | tig0020912:125368-125387 | None:intergenic | 60.0% | |
| ! | TTACTGGCTGGCGTACTCGG+TGG | + | tig0020912:125367-125386 | Msa1387600:CDS | 60.0% |
| TGACCCGGTCTACGCTGACG+TGG | + | tig0020912:123985-124004 | Msa1387600:intron | 65.0% | |
| GTGCCACGTCAGCGTAGACC+GGG | - | tig0020912:123991-124010 | None:intergenic | 65.0% | |
| ! | GGTGCCACGTCAGCGTAGAC+CGG | - | tig0020912:123992-124011 | None:intergenic | 65.0% |
| GAATAGGCCGTGCGCGTGCC+TGG | - | tig0020912:121963-121982 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020912 | gene | 119909 | 125456 | 119909 | ID=Msa1387600;Name=Msa1387600 |
| tig0020912 | mRNA | 119909 | 125456 | 119909 | ID=Msa1387600-mRNA-1;Parent=Msa1387600;Name=Msa1387600-mRNA-1;_AED=0.43;_eAED=0.44;_QI=0|0.16|0.14|0.85|1|1|7|0|224 |
| tig0020912 | exon | 119909 | 119917 | 119909 | ID=Msa1387600-mRNA-1:exon:10678;Parent=Msa1387600-mRNA-1 |
| tig0020912 | exon | 120437 | 120596 | 120437 | ID=Msa1387600-mRNA-1:exon:10679;Parent=Msa1387600-mRNA-1 |
| tig0020912 | exon | 120677 | 120682 | 120677 | ID=Msa1387600-mRNA-1:exon:10680;Parent=Msa1387600-mRNA-1 |
| tig0020912 | exon | 123294 | 123494 | 123294 | ID=Msa1387600-mRNA-1:exon:10681;Parent=Msa1387600-mRNA-1 |
| tig0020912 | exon | 123587 | 123651 | 123587 | ID=Msa1387600-mRNA-1:exon:10682;Parent=Msa1387600-mRNA-1 |
| tig0020912 | exon | 124959 | 124967 | 124959 | ID=Msa1387600-mRNA-1:exon:10683;Parent=Msa1387600-mRNA-1 |
| tig0020912 | exon | 125235 | 125456 | 125235 | ID=Msa1387600-mRNA-1:exon:10684;Parent=Msa1387600-mRNA-1 |
| tig0020912 | CDS | 119909 | 119917 | 119909 | ID=Msa1387600-mRNA-1:cds;Parent=Msa1387600-mRNA-1 |
| tig0020912 | CDS | 120437 | 120596 | 120437 | ID=Msa1387600-mRNA-1:cds;Parent=Msa1387600-mRNA-1 |
| tig0020912 | CDS | 120677 | 120682 | 120677 | ID=Msa1387600-mRNA-1:cds;Parent=Msa1387600-mRNA-1 |
| tig0020912 | CDS | 123294 | 123494 | 123294 | ID=Msa1387600-mRNA-1:cds;Parent=Msa1387600-mRNA-1 |
| tig0020912 | CDS | 123587 | 123651 | 123587 | ID=Msa1387600-mRNA-1:cds;Parent=Msa1387600-mRNA-1 |
| tig0020912 | CDS | 124959 | 124967 | 124959 | ID=Msa1387600-mRNA-1:cds;Parent=Msa1387600-mRNA-1 |
| tig0020912 | CDS | 125235 | 125456 | 125235 | ID=Msa1387600-mRNA-1:cds;Parent=Msa1387600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
