Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388490 | RHN52894.1 | 56.579 | 152 | 66 | 0 | 62 | 213 | 4 | 155 | 3.03e-52 | 176 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388490 | A0A396HLX6 | 56.579 | 152 | 66 | 0 | 62 | 213 | 4 | 155 | 1.45e-52 | 176 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0999550 | Msa1388490 | 0.976388 | 9.899884e-142 | -8.615850e-47 |
Msa0899760 | Msa1388490 | 0.813819 | 2.110240e-51 | -8.615850e-47 |
Msa0964710 | Msa1388490 | 0.933902 | 9.230791e-96 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388490 | MtrunA17_Chr6g0485491 | 56.579 | 152 | 66 | 0 | 62 | 213 | 4 | 155 | 2.79e-56 | 176 |
Msa1388490 | MtrunA17_Chr6g0485481 | 63.910 | 133 | 47 | 1 | 20 | 151 | 1 | 133 | 3.91e-56 | 174 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388490 | AT1G79310.1 | 26.966 | 178 | 115 | 5 | 5 | 169 | 2 | 177 | 1.06e-12 | 66.6 |
Find 46 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGCTGACCATATAATATT+TGG | 0.148969 | tig0021124:-26591 | None:intergenic |
AAGATGAAAATATTGATTAT+TGG | 0.166905 | tig0021124:+26040 | Msa1388490:CDS |
GACTGACTCTTCATCCCTTT+TGG | 0.233722 | tig0021124:-26476 | None:intergenic |
ACTATTAAAGCTCTCTTTGT+AGG | 0.282700 | tig0021124:-25934 | None:intergenic |
AGAGTCAGTCAAAGGTTCTT+TGG | 0.292750 | tig0021124:+26489 | Msa1388490:CDS |
AGTATCACCTGGCTTTGATA+TGG | 0.372210 | tig0021124:-26139 | None:intergenic |
GAGTCAGTCAAAGGTTCTTT+GGG | 0.376370 | tig0021124:+26490 | Msa1388490:CDS |
AATTCATCATGCGTTATTCC+AGG | 0.382392 | tig0021124:-26556 | None:intergenic |
CAAAGGATCCAAATATTATA+TGG | 0.383489 | tig0021124:+26583 | Msa1388490:CDS |
TTCTATTCACATCTTCCAAA+AGG | 0.390556 | tig0021124:+26461 | Msa1388490:CDS |
TCTTGACGCCGTCAGCCATT+TGG | 0.395579 | tig0021124:-26375 | None:intergenic |
GCCAATGGAACTCCTTTACT+TGG | 0.433502 | tig0021124:+26225 | Msa1388490:CDS |
TTCATGATTGATGCTTGTTA+CGG | 0.446394 | tig0021124:+26403 | Msa1388490:CDS |
CTCATCAGTGGCACAAAGGT+CGG | 0.466093 | tig0021124:-26629 | None:intergenic |
ATTGATGCTTGTTACGGAGG+GGG | 0.492034 | tig0021124:+26409 | Msa1388490:CDS |
TCATCAGTGGCACAAAGGTC+GGG | 0.493995 | tig0021124:-26628 | None:intergenic |
TGATTGATGCTTGTTACGGA+GGG | 0.498805 | tig0021124:+26407 | Msa1388490:CDS |
AGTTACCTTGTTGCAGCCAA+TGG | 0.499386 | tig0021124:+26210 | Msa1388490:CDS |
TCTATTCACATCTTCCAAAA+GGG | 0.515999 | tig0021124:+26462 | Msa1388490:CDS |
TTGAGGAAGTTACCAAGTAA+AGG | 0.533780 | tig0021124:-26237 | None:intergenic |
ACCAAGTAAAGGAGTTCCAT+TGG | 0.537259 | tig0021124:-26226 | None:intergenic |
TTAATTACCATATCAAAGCC+AGG | 0.542624 | tig0021124:+26132 | Msa1388490:CDS |
GACAGAAACGATGGAGGACC+TGG | 0.548548 | tig0021124:+26066 | Msa1388490:CDS |
ATGATTGATGCTTGTTACGG+AGG | 0.558998 | tig0021124:+26406 | Msa1388490:CDS |
ATGTGAATAGAACAACTTTG+TGG | 0.564614 | tig0021124:-26450 | None:intergenic |
CAAATATTATATGGTCAGCA+TGG | 0.570578 | tig0021124:+26592 | Msa1388490:CDS |
GTGGCACAAAGGTCGGGTAG+TGG | 0.571496 | tig0021124:-26622 | None:intergenic |
CGCATGATGAATTGATACAA+AGG | 0.574943 | tig0021124:+26566 | Msa1388490:CDS |
TTGATGCTTGTTACGGAGGG+GGG | 0.576592 | tig0021124:+26410 | Msa1388490:CDS |
AAAAGTTTGCTAATAAATCG+TGG | 0.578152 | tig0021124:+26012 | Msa1388490:CDS |
ATTCATCATGCGTTATTCCA+GGG | 0.587040 | tig0021124:-26555 | None:intergenic |
TCGGAATATGTATTGAGTGT+AGG | 0.587606 | tig0021124:-25976 | None:intergenic |
GATTGATGCTTGTTACGGAG+GGG | 0.589936 | tig0021124:+26408 | Msa1388490:CDS |
TAGAATCAAGTTAAGAGAGT+GGG | 0.593682 | tig0021124:+26676 | Msa1388490:exon |
AGGGATGAAGAGTCAGTCAA+AGG | 0.601689 | tig0021124:+26481 | Msa1388490:CDS |
GATTGTGTTAATGATTACCC+TGG | 0.604085 | tig0021124:+26538 | Msa1388490:CDS |
CATGGTAACTATCAACAAAG+AGG | 0.608307 | tig0021124:+26183 | Msa1388490:CDS |
ATAGAATCAAGTTAAGAGAG+TGG | 0.627109 | tig0021124:+26675 | Msa1388490:exon |
ATGGTAACTATCAACAAAGA+GGG | 0.636257 | tig0021124:+26184 | Msa1388490:CDS |
GAGTTCCATTGGCTGCAACA+AGG | 0.637602 | tig0021124:-26215 | None:intergenic |
ACACTCAATACATATTCCGA+TGG | 0.646069 | tig0021124:+25979 | Msa1388490:CDS |
GTGTTAGACCAAATGGCTGA+CGG | 0.654978 | tig0021124:+26367 | Msa1388490:CDS |
TATTGGCAAGACAGAAACGA+TGG | 0.655578 | tig0021124:+26057 | Msa1388490:CDS |
TCAGCATCAATAAGGAAACC+AGG | 0.656233 | tig0021124:-26084 | None:intergenic |
TTATCTCATCAGTGGCACAA+AGG | 0.659996 | tig0021124:-26633 | None:intergenic |
TGGCAAGACAGAAACGATGG+AGG | 0.703781 | tig0021124:+26060 | Msa1388490:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGATGAAAATATTGATTAT+TGG | + | tig0021124:26040-26059 | Msa1388490:CDS | 15.0% |
!!! | AAGATGAAAATATTGATTAT+TGG | + | tig0021124:26040-26059 | Msa1388490:CDS | 15.0% |
!!! | AAAAGTTTGCTAATAAATCG+TGG | + | tig0021124:26012-26031 | Msa1388490:CDS | 25.0% |
!! | TGAAAAAATAAAGTATCACC+TGG | - | tig0021124:26153-26172 | None:intergenic | 25.0% |
!!! | ACTTTATTTTTTCACTTCAG+TGG | + | tig0021124:26159-26178 | Msa1388490:CDS | 25.0% |
!!! | TAAAAAAGTGTTAGACCAAA+TGG | + | tig0021124:26360-26379 | Msa1388490:CDS | 25.0% |
! | CAAAGGATCCAAATATTATA+TGG | + | tig0021124:26583-26602 | Msa1388490:CDS | 25.0% |
!!! | AGAATTTTTTATCTCATCAG+TGG | - | tig0021124:26644-26663 | None:intergenic | 25.0% |
!!! | AAAAGTTTGCTAATAAATCG+TGG | + | tig0021124:26012-26031 | Msa1388490:CDS | 25.0% |
!! | TGAAAAAATAAAGTATCACC+TGG | - | tig0021124:26153-26172 | None:intergenic | 25.0% |
!!! | ACTTTATTTTTTCACTTCAG+TGG | + | tig0021124:26159-26178 | Msa1388490:CDS | 25.0% |
!!! | TAAAAAAGTGTTAGACCAAA+TGG | + | tig0021124:26360-26379 | Msa1388490:CDS | 25.0% |
! | CAAAGGATCCAAATATTATA+TGG | + | tig0021124:26583-26602 | Msa1388490:CDS | 25.0% |
!!! | AGAATTTTTTATCTCATCAG+TGG | - | tig0021124:26644-26663 | None:intergenic | 25.0% |
ACTATTAAAGCTCTCTTTGT+AGG | - | tig0021124:25937-25956 | None:intergenic | 30.0% | |
! | GTATTTTGTCAGCATCAATA+AGG | - | tig0021124:26095-26114 | None:intergenic | 30.0% |
TTAATTACCATATCAAAGCC+AGG | + | tig0021124:26132-26151 | Msa1388490:CDS | 30.0% | |
ATGGTAACTATCAACAAAGA+GGG | + | tig0021124:26184-26203 | Msa1388490:CDS | 30.0% | |
TATTTGTGATTCTCAATGCA+TGG | + | tig0021124:26288-26307 | Msa1388490:intron | 30.0% | |
! | TTCATGATTGATGCTTGTTA+CGG | + | tig0021124:26403-26422 | Msa1388490:CDS | 30.0% |
ATGTGAATAGAACAACTTTG+TGG | - | tig0021124:26453-26472 | None:intergenic | 30.0% | |
TTCTATTCACATCTTCCAAA+AGG | + | tig0021124:26461-26480 | Msa1388490:CDS | 30.0% | |
TCTATTCACATCTTCCAAAA+GGG | + | tig0021124:26462-26481 | Msa1388490:CDS | 30.0% | |
CATGCTGACCATATAATATT+TGG | - | tig0021124:26594-26613 | None:intergenic | 30.0% | |
CAAATATTATATGGTCAGCA+TGG | + | tig0021124:26592-26611 | Msa1388490:CDS | 30.0% | |
ATAGAATCAAGTTAAGAGAG+TGG | + | tig0021124:26675-26694 | Msa1388490:exon | 30.0% | |
TAGAATCAAGTTAAGAGAGT+GGG | + | tig0021124:26676-26695 | Msa1388490:exon | 30.0% | |
ACTATTAAAGCTCTCTTTGT+AGG | - | tig0021124:25937-25956 | None:intergenic | 30.0% | |
! | GTATTTTGTCAGCATCAATA+AGG | - | tig0021124:26095-26114 | None:intergenic | 30.0% |
TTAATTACCATATCAAAGCC+AGG | + | tig0021124:26132-26151 | Msa1388490:CDS | 30.0% | |
ATGGTAACTATCAACAAAGA+GGG | + | tig0021124:26184-26203 | Msa1388490:CDS | 30.0% | |
TATTTGTGATTCTCAATGCA+TGG | + | tig0021124:26288-26307 | Msa1388490:intron | 30.0% | |
! | TTCATGATTGATGCTTGTTA+CGG | + | tig0021124:26403-26422 | Msa1388490:CDS | 30.0% |
ATGTGAATAGAACAACTTTG+TGG | - | tig0021124:26453-26472 | None:intergenic | 30.0% | |
TTCTATTCACATCTTCCAAA+AGG | + | tig0021124:26461-26480 | Msa1388490:CDS | 30.0% | |
TCTATTCACATCTTCCAAAA+GGG | + | tig0021124:26462-26481 | Msa1388490:CDS | 30.0% | |
CATGCTGACCATATAATATT+TGG | - | tig0021124:26594-26613 | None:intergenic | 30.0% | |
CAAATATTATATGGTCAGCA+TGG | + | tig0021124:26592-26611 | Msa1388490:CDS | 30.0% | |
ATAGAATCAAGTTAAGAGAG+TGG | + | tig0021124:26675-26694 | Msa1388490:exon | 30.0% | |
TAGAATCAAGTTAAGAGAGT+GGG | + | tig0021124:26676-26695 | Msa1388490:exon | 30.0% | |
TCGGAATATGTATTGAGTGT+AGG | - | tig0021124:25979-25998 | None:intergenic | 35.0% | |
ACACTCAATACATATTCCGA+TGG | + | tig0021124:25979-25998 | Msa1388490:CDS | 35.0% | |
! | ACTTTTTATCTTCGCACCAT+CGG | - | tig0021124:25998-26017 | None:intergenic | 35.0% |
!!! | TTTTTTCACTTCAGTGGACA+TGG | + | tig0021124:26165-26184 | Msa1388490:CDS | 35.0% |
CATGGTAACTATCAACAAAG+AGG | + | tig0021124:26183-26202 | Msa1388490:CDS | 35.0% | |
TTGAGGAAGTTACCAAGTAA+AGG | - | tig0021124:26240-26259 | None:intergenic | 35.0% | |
TATTAGCATGAGATGTGTTG+AGG | - | tig0021124:26257-26276 | None:intergenic | 35.0% | |
GATTGTGTTAATGATTACCC+TGG | + | tig0021124:26538-26557 | Msa1388490:CDS | 35.0% | |
ATTCATCATGCGTTATTCCA+GGG | - | tig0021124:26558-26577 | None:intergenic | 35.0% | |
AATTCATCATGCGTTATTCC+AGG | - | tig0021124:26559-26578 | None:intergenic | 35.0% | |
CGCATGATGAATTGATACAA+AGG | + | tig0021124:26566-26585 | Msa1388490:CDS | 35.0% | |
TCGGAATATGTATTGAGTGT+AGG | - | tig0021124:25979-25998 | None:intergenic | 35.0% | |
ACACTCAATACATATTCCGA+TGG | + | tig0021124:25979-25998 | Msa1388490:CDS | 35.0% | |
! | ACTTTTTATCTTCGCACCAT+CGG | - | tig0021124:25998-26017 | None:intergenic | 35.0% |
!!! | TTTTTTCACTTCAGTGGACA+TGG | + | tig0021124:26165-26184 | Msa1388490:CDS | 35.0% |
CATGGTAACTATCAACAAAG+AGG | + | tig0021124:26183-26202 | Msa1388490:CDS | 35.0% | |
TTGAGGAAGTTACCAAGTAA+AGG | - | tig0021124:26240-26259 | None:intergenic | 35.0% | |
TATTAGCATGAGATGTGTTG+AGG | - | tig0021124:26257-26276 | None:intergenic | 35.0% | |
GATTGTGTTAATGATTACCC+TGG | + | tig0021124:26538-26557 | Msa1388490:CDS | 35.0% | |
ATTCATCATGCGTTATTCCA+GGG | - | tig0021124:26558-26577 | None:intergenic | 35.0% | |
AATTCATCATGCGTTATTCC+AGG | - | tig0021124:26559-26578 | None:intergenic | 35.0% | |
CGCATGATGAATTGATACAA+AGG | + | tig0021124:26566-26585 | Msa1388490:CDS | 35.0% | |
TATTGGCAAGACAGAAACGA+TGG | + | tig0021124:26057-26076 | Msa1388490:CDS | 40.0% | |
TCAGCATCAATAAGGAAACC+AGG | - | tig0021124:26087-26106 | None:intergenic | 40.0% | |
!! | AGTATCACCTGGCTTTGATA+TGG | - | tig0021124:26142-26161 | None:intergenic | 40.0% |
ACCAAGTAAAGGAGTTCCAT+TGG | - | tig0021124:26229-26248 | None:intergenic | 40.0% | |
! | ATGATTGATGCTTGTTACGG+AGG | + | tig0021124:26406-26425 | Msa1388490:CDS | 40.0% |
! | TGATTGATGCTTGTTACGGA+GGG | + | tig0021124:26407-26426 | Msa1388490:CDS | 40.0% |
AGAGTCAGTCAAAGGTTCTT+TGG | + | tig0021124:26489-26508 | Msa1388490:CDS | 40.0% | |
GAGTCAGTCAAAGGTTCTTT+GGG | + | tig0021124:26490-26509 | Msa1388490:CDS | 40.0% | |
TTATCTCATCAGTGGCACAA+AGG | - | tig0021124:26636-26655 | None:intergenic | 40.0% | |
TATTGGCAAGACAGAAACGA+TGG | + | tig0021124:26057-26076 | Msa1388490:CDS | 40.0% | |
TCAGCATCAATAAGGAAACC+AGG | - | tig0021124:26087-26106 | None:intergenic | 40.0% | |
!! | AGTATCACCTGGCTTTGATA+TGG | - | tig0021124:26142-26161 | None:intergenic | 40.0% |
ACCAAGTAAAGGAGTTCCAT+TGG | - | tig0021124:26229-26248 | None:intergenic | 40.0% | |
! | ATGATTGATGCTTGTTACGG+AGG | + | tig0021124:26406-26425 | Msa1388490:CDS | 40.0% |
! | TGATTGATGCTTGTTACGGA+GGG | + | tig0021124:26407-26426 | Msa1388490:CDS | 40.0% |
AGAGTCAGTCAAAGGTTCTT+TGG | + | tig0021124:26489-26508 | Msa1388490:CDS | 40.0% | |
GAGTCAGTCAAAGGTTCTTT+GGG | + | tig0021124:26490-26509 | Msa1388490:CDS | 40.0% | |
TTATCTCATCAGTGGCACAA+AGG | - | tig0021124:26636-26655 | None:intergenic | 40.0% | |
AGTTACCTTGTTGCAGCCAA+TGG | + | tig0021124:26210-26229 | Msa1388490:CDS | 45.0% | |
GCCAATGGAACTCCTTTACT+TGG | + | tig0021124:26225-26244 | Msa1388490:CDS | 45.0% | |
! | ATTTGCTACGTGACTTGTGC+AGG | + | tig0021124:26328-26347 | Msa1388490:intron | 45.0% |
GTGTTAGACCAAATGGCTGA+CGG | + | tig0021124:26367-26386 | Msa1388490:CDS | 45.0% | |
! | GATTGATGCTTGTTACGGAG+GGG | + | tig0021124:26408-26427 | Msa1388490:CDS | 45.0% |
! | ATTGATGCTTGTTACGGAGG+GGG | + | tig0021124:26409-26428 | Msa1388490:CDS | 45.0% |
!! | GACTGACTCTTCATCCCTTT+TGG | - | tig0021124:26479-26498 | None:intergenic | 45.0% |
AGGGATGAAGAGTCAGTCAA+AGG | + | tig0021124:26481-26500 | Msa1388490:CDS | 45.0% | |
AGTTACCTTGTTGCAGCCAA+TGG | + | tig0021124:26210-26229 | Msa1388490:CDS | 45.0% | |
GCCAATGGAACTCCTTTACT+TGG | + | tig0021124:26225-26244 | Msa1388490:CDS | 45.0% | |
! | ATTTGCTACGTGACTTGTGC+AGG | + | tig0021124:26328-26347 | Msa1388490:intron | 45.0% |
GTGTTAGACCAAATGGCTGA+CGG | + | tig0021124:26367-26386 | Msa1388490:CDS | 45.0% | |
! | GATTGATGCTTGTTACGGAG+GGG | + | tig0021124:26408-26427 | Msa1388490:CDS | 45.0% |
! | ATTGATGCTTGTTACGGAGG+GGG | + | tig0021124:26409-26428 | Msa1388490:CDS | 45.0% |
!! | GACTGACTCTTCATCCCTTT+TGG | - | tig0021124:26479-26498 | None:intergenic | 45.0% |
AGGGATGAAGAGTCAGTCAA+AGG | + | tig0021124:26481-26500 | Msa1388490:CDS | 45.0% | |
TGGCAAGACAGAAACGATGG+AGG | + | tig0021124:26060-26079 | Msa1388490:CDS | 50.0% | |
! | GAGTTCCATTGGCTGCAACA+AGG | - | tig0021124:26218-26237 | None:intergenic | 50.0% |
! | TTGATGCTTGTTACGGAGGG+GGG | + | tig0021124:26410-26429 | Msa1388490:CDS | 50.0% |
TCATCAGTGGCACAAAGGTC+GGG | - | tig0021124:26631-26650 | None:intergenic | 50.0% | |
CTCATCAGTGGCACAAAGGT+CGG | - | tig0021124:26632-26651 | None:intergenic | 50.0% | |
TGGCAAGACAGAAACGATGG+AGG | + | tig0021124:26060-26079 | Msa1388490:CDS | 50.0% | |
! | GAGTTCCATTGGCTGCAACA+AGG | - | tig0021124:26218-26237 | None:intergenic | 50.0% |
! | TTGATGCTTGTTACGGAGGG+GGG | + | tig0021124:26410-26429 | Msa1388490:CDS | 50.0% |
TCATCAGTGGCACAAAGGTC+GGG | - | tig0021124:26631-26650 | None:intergenic | 50.0% | |
CTCATCAGTGGCACAAAGGT+CGG | - | tig0021124:26632-26651 | None:intergenic | 50.0% | |
GACAGAAACGATGGAGGACC+TGG | + | tig0021124:26066-26085 | Msa1388490:CDS | 55.0% | |
TCTTGACGCCGTCAGCCATT+TGG | - | tig0021124:26378-26397 | None:intergenic | 55.0% | |
GACAGAAACGATGGAGGACC+TGG | + | tig0021124:26066-26085 | Msa1388490:CDS | 55.0% | |
TCTTGACGCCGTCAGCCATT+TGG | - | tig0021124:26378-26397 | None:intergenic | 55.0% | |
GTGGCACAAAGGTCGGGTAG+TGG | - | tig0021124:26625-26644 | None:intergenic | 60.0% | |
GTGGCACAAAGGTCGGGTAG+TGG | - | tig0021124:26625-26644 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0021124 | gene | 25925 | 26738 | 25925 | ID=Msa1388490;Name=Msa1388490 |
tig0021124 | mRNA | 25925 | 26738 | 25925 | ID=Msa1388490-mRNA-1;Parent=Msa1388490;Name=Msa1388490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.5|1|1|0.5|2|60|216 |
tig0021124 | exon | 25925 | 26246 | 25925 | ID=Msa1388490-mRNA-1:exon:11129;Parent=Msa1388490-mRNA-1 |
tig0021124 | exon | 26350 | 26738 | 26350 | ID=Msa1388490-mRNA-1:exon:11130;Parent=Msa1388490-mRNA-1 |
tig0021124 | CDS | 25925 | 26246 | 25925 | ID=Msa1388490-mRNA-1:cds;Parent=Msa1388490-mRNA-1 |
tig0021124 | CDS | 26350 | 26678 | 26350 | ID=Msa1388490-mRNA-1:cds;Parent=Msa1388490-mRNA-1 |
tig0021124 | three_prime_UTR | 26679 | 26738 | 26679 | ID=Msa1388490-mRNA-1:three_prime_utr;Parent=Msa1388490-mRNA-1 |
Gene Sequence |
Protein sequence |