Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388700 | XP_039687287.1 | 76.181 | 508 | 39 | 4 | 1 | 473 | 1 | 461 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388700 | A0A2K3M0R9 | 58.839 | 379 | 69 | 5 | 131 | 473 | 2 | 329 | 1.85e-129 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0797170 | Msa1388700 | 0.860235 | 2.378737e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388700 | MtrunA17_Chr8g0345501 | 26.034 | 411 | 204 | 15 | 64 | 437 | 352 | 699 | 3.09e-13 | 72.0 |
| Msa1388700 | MtrunA17_Chr4g0025081 | 25.854 | 205 | 93 | 4 | 178 | 374 | 326 | 479 | 4.88e-13 | 71.2 |
| Msa1388700 | MtrunA17_Chr1g0176161 | 25.094 | 267 | 138 | 6 | 178 | 436 | 253 | 465 | 1.69e-12 | 69.3 |
| Msa1388700 | MtrunA17_Chr3g0086081 | 28.743 | 167 | 81 | 3 | 134 | 266 | 7 | 169 | 2.03e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCAAATTTGCTCTTAA+TGG | 0.030512 | tig0021157:-84282 | None:intergenic |
| TTCATGCTCAAATATCTTTA+AGG | 0.125204 | tig0021157:+85969 | Msa1388700:CDS |
| GTTATGGTTTACTGAATTTA+AGG | 0.168249 | tig0021157:+84346 | Msa1388700:CDS |
| ATCATCATTGTTTGCATTAG+AGG | 0.184290 | tig0021157:-86211 | None:intergenic |
| GGTTGGTGTTAGTGGATTTC+AGG | 0.188067 | tig0021157:+85440 | Msa1388700:CDS |
| GGAATCAATTAATACATTAT+TGG | 0.196503 | tig0021157:+84691 | Msa1388700:CDS |
| TGCCAGATGACTTGACTATT+TGG | 0.234675 | tig0021157:+85863 | Msa1388700:CDS |
| TACTGCTGGTTCTATATCTA+TGG | 0.241436 | tig0021157:+84791 | Msa1388700:CDS |
| ATGGGGTTGGAGTTGGTGTT+GGG | 0.245459 | tig0021157:-83973 | None:intergenic |
| GAAGAGAAAAGCAGAGCTTT+TGG | 0.280604 | tig0021157:+85780 | Msa1388700:CDS |
| GTTAGTGGATTTCAGGCTTC+AGG | 0.287907 | tig0021157:+85447 | Msa1388700:CDS |
| GAATCAATTAATACATTATT+GGG | 0.289750 | tig0021157:+84692 | Msa1388700:CDS |
| GATGGGGTTGGAGTTGGTGT+TGG | 0.298119 | tig0021157:-83974 | None:intergenic |
| AAAGGAAAACTATATGGTTT+AGG | 0.310844 | tig0021157:+85910 | Msa1388700:CDS |
| TGGAACAAGAGCTCTTAAAA+TGG | 0.322348 | tig0021157:+86001 | Msa1388700:CDS |
| TGTATTAATTGATTCCATAT+TGG | 0.323717 | tig0021157:-84684 | None:intergenic |
| CGCTGGTGTTTGTGCAGCCT+TGG | 0.336144 | tig0021157:+85411 | Msa1388700:CDS |
| CTCTTGACCAGAAGTTGTTA+TGG | 0.339274 | tig0021157:+84330 | Msa1388700:CDS |
| CTATATGGTTTAGGTTCTAT+AGG | 0.343666 | tig0021157:+85919 | Msa1388700:CDS |
| CAGTAAACCATAACAACTTC+TGG | 0.354429 | tig0021157:-84337 | None:intergenic |
| GAGGCTTCAGCAACATCATT+TGG | 0.358136 | tig0021157:-86192 | None:intergenic |
| TGTGATAATGATTGATTTAG+AGG | 0.363674 | tig0021157:-83884 | None:intergenic |
| TCATTTGGTTCATCTTGAAT+AGG | 0.364266 | tig0021157:-86177 | None:intergenic |
| AGTACATCTCTGAGCCAATA+TGG | 0.383331 | tig0021157:+84670 | Msa1388700:CDS |
| AATGCTTCGAAGTATACTAT+TGG | 0.390634 | tig0021157:+85946 | Msa1388700:CDS |
| GGTGTCGCACAAGCAAAGTT+TGG | 0.399282 | tig0021157:-86156 | None:intergenic |
| CCATTAAGAGCAAATTTGAT+TGG | 0.403756 | tig0021157:+84282 | Msa1388700:CDS |
| GTTGGTGTTGGGGTTTGAGT+TGG | 0.405510 | tig0021157:-83962 | None:intergenic |
| GGACTGATTTGGCCAGCTGC+TGG | 0.414131 | tig0021157:+85373 | Msa1388700:CDS |
| TCACGAGGCCGACACTCAAC+TGG | 0.433427 | tig0021157:+83809 | Msa1388700:CDS |
| TGACTTGGTGGAGGAGGTAA+AGG | 0.435583 | tig0021157:+85148 | Msa1388700:CDS |
| AAAATGTAGGAGAATGAAAC+AGG | 0.438908 | tig0021157:+84905 | Msa1388700:intron |
| AAGAAACGAATAGCAGTTGA+TGG | 0.440717 | tig0021157:-84251 | None:intergenic |
| TCAATTCCTTCATCATCATC+AGG | 0.444663 | tig0021157:-84094 | None:intergenic |
| TTCATCATCATCAGGTTCAA+TGG | 0.447367 | tig0021157:-84086 | None:intergenic |
| GTAGTTGATGCGTTCGGAGT+TGG | 0.448880 | tig0021157:-84016 | None:intergenic |
| ACATTCGAAAGGATAAGAAA+TGG | 0.457529 | tig0021157:+84966 | Msa1388700:CDS |
| TAATAATTAGATTGCTAGGT+GGG | 0.461695 | tig0021157:+85124 | Msa1388700:intron |
| TTTGAGGTATAGTAGCTGAT+GGG | 0.468940 | tig0021157:-83991 | None:intergenic |
| TGGGGTTGGAGTTGGTGTTG+GGG | 0.469934 | tig0021157:-83972 | None:intergenic |
| TTCCAAATAGTCAAGTCATC+TGG | 0.478583 | tig0021157:-85865 | None:intergenic |
| TTGATTGGTTTATTCCTACA+TGG | 0.481763 | tig0021157:+84297 | Msa1388700:CDS |
| GTGGGATGACTTGGTGGAGG+AGG | 0.483059 | tig0021157:+85142 | Msa1388700:CDS |
| GTTGGGGTTTGAGTTGGTGA+CGG | 0.490929 | tig0021157:-83956 | None:intergenic |
| GCTCTTAAAATGGAAAGAAA+AGG | 0.497086 | tig0021157:+86011 | Msa1388700:CDS |
| TATAGAACCAGCAGTATGAA+TGG | 0.497172 | tig0021157:-84784 | None:intergenic |
| ATTGGCTCAGAGATGTACTT+TGG | 0.497630 | tig0021157:-84666 | None:intergenic |
| ACCTGTGGAGATGGTATAGT+AGG | 0.498276 | tig0021157:-83860 | None:intergenic |
| GCAAATACCTCCTCCACTGC+AGG | 0.498509 | tig0021157:-84935 | None:intergenic |
| TGCTAGGTGGGATGACTTGG+TGG | 0.501009 | tig0021157:+85136 | Msa1388700:CDS |
| TTCTATATCTATGGGTGAGA+AGG | 0.502165 | tig0021157:+84800 | Msa1388700:CDS |
| ATTTCTTATCCTTTCGAATG+TGG | 0.515569 | tig0021157:-84964 | None:intergenic |
| GGTATAGTAGCTGATGGGGT+TGG | 0.515889 | tig0021157:-83986 | None:intergenic |
| GGTAGCTCCATTCATACTGC+TGG | 0.517845 | tig0021157:+84777 | Msa1388700:CDS |
| TTAACTTACTCATTTCCATA+CGG | 0.519552 | tig0021157:-84142 | None:intergenic |
| AGCCACGCCTGCAGTGGAGG+AGG | 0.522287 | tig0021157:+84928 | Msa1388700:CDS |
| AGGAGCCACGCCTGCAGTGG+AGG | 0.522444 | tig0021157:+84925 | Msa1388700:CDS |
| CATTCGAAAGGATAAGAAAT+GGG | 0.523660 | tig0021157:+84967 | Msa1388700:CDS |
| GGCCGACACTCAACTGGCAG+AGG | 0.524984 | tig0021157:+83815 | Msa1388700:CDS |
| TACCTCCTCCACTGCAGGCG+TGG | 0.527940 | tig0021157:-84930 | None:intergenic |
| GATTGCTAGGTGGGATGACT+TGG | 0.530402 | tig0021157:+85133 | Msa1388700:intron |
| CAAGCAAAGTTTGGAGGCAA+TGG | 0.532892 | tig0021157:-86147 | None:intergenic |
| AGTCATCTGGCATATTATGA+TGG | 0.535927 | tig0021157:-85852 | None:intergenic |
| TTGAGGTATAGTAGCTGATG+GGG | 0.538363 | tig0021157:-83990 | None:intergenic |
| AACAGGAGCCACGCCTGCAG+TGG | 0.538426 | tig0021157:+84922 | Msa1388700:CDS |
| TGCTCTTTGCCACATTCGAA+AGG | 0.544773 | tig0021157:+84955 | Msa1388700:CDS |
| GCAAATCGTGCTTCAACTCA+AGG | 0.546016 | tig0021157:+84756 | Msa1388700:CDS |
| ACTGCTGGTTCTATATCTAT+GGG | 0.548230 | tig0021157:+84792 | Msa1388700:CDS |
| GTAGCTGATGGGGTTGGAGT+TGG | 0.552425 | tig0021157:-83980 | None:intergenic |
| TTTAGAGGTACCTGTGGAGA+TGG | 0.553255 | tig0021157:-83869 | None:intergenic |
| GGTATGGTAGTTGATGCGTT+CGG | 0.553431 | tig0021157:-84022 | None:intergenic |
| TCTCAAAATCAAGAGGAAGA+AGG | 0.560821 | tig0021157:+85814 | Msa1388700:CDS |
| TGATTGGTTTATTCCTACAT+GGG | 0.565502 | tig0021157:+84298 | Msa1388700:CDS |
| GGGTGAGAAGGGACGTAGGA+TGG | 0.568413 | tig0021157:+84812 | Msa1388700:CDS |
| ATCTATGTCTCAAAATCAAG+AGG | 0.574405 | tig0021157:+85807 | Msa1388700:CDS |
| CATACGGCTCTATTTCGTCA+AGG | 0.578445 | tig0021157:-84126 | None:intergenic |
| TCTATATCTATGGGTGAGAA+GGG | 0.583739 | tig0021157:+84801 | Msa1388700:CDS |
| TCCCTCTGCCAGTTGAGTGT+CGG | 0.583841 | tig0021157:-83817 | None:intergenic |
| TAGGTGGGATGACTTGGTGG+AGG | 0.595117 | tig0021157:+85139 | Msa1388700:CDS |
| AGATGACTTGACTATTTGGA+AGG | 0.595353 | tig0021157:+85867 | Msa1388700:CDS |
| GCCGACACTCAACTGGCAGA+GGG | 0.596424 | tig0021157:+83816 | Msa1388700:CDS |
| GTCGCACAAGCAAAGTTTGG+AGG | 0.597843 | tig0021157:-86153 | None:intergenic |
| GATGAAGGAATTGATCAAGA+AGG | 0.598338 | tig0021157:+84103 | Msa1388700:CDS |
| AGTTGAGTGTCGGCCTCGTG+AGG | 0.604402 | tig0021157:-83807 | None:intergenic |
| ACCTACTATACCATCTCCAC+AGG | 0.604984 | tig0021157:+83859 | Msa1388700:CDS |
| ATAGTGTTTATGTGTGGTGA+TGG | 0.606642 | tig0021157:-83920 | None:intergenic |
| GTTGGTGACGGTGATGATGA+TGG | 0.611648 | tig0021157:-83944 | None:intergenic |
| AGAGATGCATGTCCCCATGT+AGG | 0.616633 | tig0021157:-84311 | None:intergenic |
| ATTGAACCTGATGATGATGA+AGG | 0.616642 | tig0021157:+84088 | Msa1388700:CDS |
| GATTGATTTAGAGGTACCTG+TGG | 0.622157 | tig0021157:-83875 | None:intergenic |
| GGAAGAGGTACTAACAGAGG+TGG | 0.638823 | tig0021157:+83773 | Msa1388700:CDS |
| GATTGGTTTATTCCTACATG+GGG | 0.638930 | tig0021157:+84299 | Msa1388700:CDS |
| TTAATAATTAGATTGCTAGG+TGG | 0.649454 | tig0021157:+85123 | Msa1388700:intron |
| CTATGGGTGAGAAGGGACGT+AGG | 0.656674 | tig0021157:+84808 | Msa1388700:CDS |
| ATGGCAGATGATTGAGTGTG+TGG | 0.657800 | tig0021157:-84067 | None:intergenic |
| CTTGACGAAATAGAGCCGTA+TGG | 0.666811 | tig0021157:+84127 | Msa1388700:CDS |
| GAGGTACTAACAGAGGTGGA+AGG | 0.670119 | tig0021157:+83777 | Msa1388700:CDS |
| TGGAAGGAAGTAGCTCCCAA+AGG | 0.672251 | tig0021157:+85883 | Msa1388700:CDS |
| TCTGGAAGAGGTACTAACAG+AGG | 0.686769 | tig0021157:+83770 | Msa1388700:CDS |
| GGAAGGACTTTATCCTCACG+AGG | 0.698655 | tig0021157:+83794 | Msa1388700:CDS |
| GATGGCATAGTGTTTATGTG+TGG | 0.712129 | tig0021157:-83926 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAACAATTTGTATTAAC+AGG | + | tig0021157:84222-84241 | Msa1388700:intron | 15.0% |
| !! | GAATCAATTAATACATTATT+GGG | + | tig0021157:84692-84711 | Msa1388700:CDS | 15.0% |
| !!! | AAATTTTAAGAATTTATCAG+TGG | + | tig0021157:84725-84744 | Msa1388700:CDS | 15.0% |
| !! | TAGTTATGATAATATTGATA+TGG | + | tig0021157:85054-85073 | Msa1388700:intron | 15.0% |
| !! | AGTTATGATAATATTGATAT+GGG | + | tig0021157:85055-85074 | Msa1388700:intron | 15.0% |
| !!! | TTTTTAATAATTAGATTGCT+AGG | + | tig0021157:85120-85139 | Msa1388700:intron | 15.0% |
| !!! | CTAAAATTACAGATTTTAAT+TGG | + | tig0021157:85709-85728 | Msa1388700:intron | 15.0% |
| !!! | TTCTTGAAATTTTTGAATAC+AGG | + | tig0021157:84643-84662 | Msa1388700:CDS | 20.0% |
| !!! | TGTATTAATTGATTCCATAT+TGG | - | tig0021157:84687-84706 | None:intergenic | 20.0% |
| !! | GGAATCAATTAATACATTAT+TGG | + | tig0021157:84691-84710 | Msa1388700:CDS | 20.0% |
| !!! | TTAATTTGTGAACAACATAT+TGG | + | tig0021157:84857-84876 | Msa1388700:intron | 20.0% |
| !!! | AAATTTTCTCATTGAAGTTA+TGG | + | tig0021157:84880-84899 | Msa1388700:intron | 20.0% |
| !! | ATAAAAAAAAACCCTTATCA+AGG | - | tig0021157:85589-85608 | None:intergenic | 20.0% |
| !! | GTAAAATCATAGATGAATTA+TGG | - | tig0021157:85690-85709 | None:intergenic | 20.0% |
| !! | TAACATAATTCAAAATTGCA+GGG | + | tig0021157:85748-85767 | Msa1388700:intron | 20.0% |
| !!! | TATCTTTAAGGAAAAAAACA+TGG | + | tig0021157:85981-86000 | Msa1388700:CDS | 20.0% |
| !! | TGTGATAATGATTGATTTAG+AGG | - | tig0021157:83887-83906 | None:intergenic | 25.0% |
| !!! | AAAGTTTGTTCAGAATTTTG+AGG | - | tig0021157:84046-84065 | None:intergenic | 25.0% |
| ! | TTAACTTACTCATTTCCATA+CGG | - | tig0021157:84145-84164 | None:intergenic | 25.0% |
| ! | GTTATGGTTTACTGAATTTA+AGG | + | tig0021157:84346-84365 | Msa1388700:CDS | 25.0% |
| ! | TGAAGTTATGGAAAAAATGT+AGG | + | tig0021157:84892-84911 | Msa1388700:intron | 25.0% |
| !! | TGATTTGGAAGATTAGAAAT+GGG | + | tig0021157:85093-85112 | Msa1388700:intron | 25.0% |
| ! | TTAATAATTAGATTGCTAGG+TGG | + | tig0021157:85123-85142 | Msa1388700:intron | 25.0% |
| ! | TAATAATTAGATTGCTAGGT+GGG | + | tig0021157:85124-85143 | Msa1388700:intron | 25.0% |
| !!! | AAGGGTTTTTTTTTATTGAG+TGG | + | tig0021157:85593-85612 | Msa1388700:intron | 25.0% |
| ! | CTAACATAATTCAAAATTGC+AGG | + | tig0021157:85747-85766 | Msa1388700:intron | 25.0% |
| !!! | AGTTTTCCTTTTTTACCTTT+GGG | - | tig0021157:85901-85920 | None:intergenic | 25.0% |
| !!! | TAGTTTTCCTTTTTTACCTT+TGG | - | tig0021157:85902-85921 | None:intergenic | 25.0% |
| ! | GGTAAAAAAGGAAAACTATA+TGG | + | tig0021157:85904-85923 | Msa1388700:CDS | 25.0% |
| ! | AAAGGAAAACTATATGGTTT+AGG | + | tig0021157:85910-85929 | Msa1388700:CDS | 25.0% |
| ! | TTCATGCTCAAATATCTTTA+AGG | + | tig0021157:85969-85988 | Msa1388700:CDS | 25.0% |
| !!! | TTGTTCAGAATTTTGAGGTA+TGG | - | tig0021157:84041-84060 | None:intergenic | 30.0% |
| ! | CCAATCAAATTTGCTCTTAA+TGG | - | tig0021157:84285-84304 | None:intergenic | 30.0% |
| CCATTAAGAGCAAATTTGAT+TGG | + | tig0021157:84282-84301 | Msa1388700:CDS | 30.0% | |
| !! | TTGATTGGTTTATTCCTACA+TGG | + | tig0021157:84297-84316 | Msa1388700:CDS | 30.0% |
| !! | TGATTGGTTTATTCCTACAT+GGG | + | tig0021157:84298-84317 | Msa1388700:CDS | 30.0% |
| CCAAAAACTTACATCAACAA+AGG | - | tig0021157:84515-84534 | None:intergenic | 30.0% | |
| ! | CCTTTGTTGATGTAAGTTTT+TGG | + | tig0021157:84512-84531 | Msa1388700:intron | 30.0% |
| AAAATGTAGGAGAATGAAAC+AGG | + | tig0021157:84905-84924 | Msa1388700:intron | 30.0% | |
| ATTTCTTATCCTTTCGAATG+TGG | - | tig0021157:84967-84986 | None:intergenic | 30.0% | |
| ACATTCGAAAGGATAAGAAA+TGG | + | tig0021157:84966-84985 | Msa1388700:CDS | 30.0% | |
| CATTCGAAAGGATAAGAAAT+GGG | + | tig0021157:84967-84986 | Msa1388700:CDS | 30.0% | |
| ! | GTGATTTGGAAGATTAGAAA+TGG | + | tig0021157:85092-85111 | Msa1388700:intron | 30.0% |
| !! | GTTTTTACTGTTTTTCTGCA+GGG | + | tig0021157:85352-85371 | Msa1388700:intron | 30.0% |
| !! | TTTCTTTGGGAGTTTTTCTT+TGG | + | tig0021157:85531-85550 | Msa1388700:intron | 30.0% |
| !! | TTCTTTGGGAGTTTTTCTTT+GGG | + | tig0021157:85532-85551 | Msa1388700:intron | 30.0% |
| ATCTATGTCTCAAAATCAAG+AGG | + | tig0021157:85807-85826 | Msa1388700:CDS | 30.0% | |
| ! | CTATATGGTTTAGGTTCTAT+AGG | + | tig0021157:85919-85938 | Msa1388700:CDS | 30.0% |
| AATGCTTCGAAGTATACTAT+TGG | + | tig0021157:85946-85965 | Msa1388700:CDS | 30.0% | |
| GCTCTTAAAATGGAAAGAAA+AGG | + | tig0021157:86011-86030 | Msa1388700:CDS | 30.0% | |
| !!! | CCAATTTTTGTTTTTGCTCT+TGG | - | tig0021157:86059-86078 | None:intergenic | 30.0% |
| CCAAGAGCAAAAACAAAAAT+TGG | + | tig0021157:86056-86075 | Msa1388700:CDS | 30.0% | |
| ! | TCATTTGGTTCATCTTGAAT+AGG | - | tig0021157:86180-86199 | None:intergenic | 30.0% |
| ATCATCATTGTTTGCATTAG+AGG | - | tig0021157:86214-86233 | None:intergenic | 30.0% | |
| ATAGTGTTTATGTGTGGTGA+TGG | - | tig0021157:83923-83942 | None:intergenic | 35.0% | |
| ! | TTTGAGGTATAGTAGCTGAT+GGG | - | tig0021157:83994-84013 | None:intergenic | 35.0% |
| !!! | TTTTGAGGTATAGTAGCTGA+TGG | - | tig0021157:83995-84014 | None:intergenic | 35.0% |
| TTCATCATCATCAGGTTCAA+TGG | - | tig0021157:84089-84108 | None:intergenic | 35.0% | |
| ! | ATTGAACCTGATGATGATGA+AGG | + | tig0021157:84088-84107 | Msa1388700:CDS | 35.0% |
| TCAATTCCTTCATCATCATC+AGG | - | tig0021157:84097-84116 | None:intergenic | 35.0% | |
| GATGAAGGAATTGATCAAGA+AGG | + | tig0021157:84103-84122 | Msa1388700:CDS | 35.0% | |
| AAGAAACGAATAGCAGTTGA+TGG | - | tig0021157:84254-84273 | None:intergenic | 35.0% | |
| !! | GATTGGTTTATTCCTACATG+GGG | + | tig0021157:84299-84318 | Msa1388700:CDS | 35.0% |
| CAGTAAACCATAACAACTTC+TGG | - | tig0021157:84340-84359 | None:intergenic | 35.0% | |
| TATAGAACCAGCAGTATGAA+TGG | - | tig0021157:84787-84806 | None:intergenic | 35.0% | |
| !! | TACTGCTGGTTCTATATCTA+TGG | + | tig0021157:84791-84810 | Msa1388700:CDS | 35.0% |
| !! | ACTGCTGGTTCTATATCTAT+GGG | + | tig0021157:84792-84811 | Msa1388700:CDS | 35.0% |
| TTCTATATCTATGGGTGAGA+AGG | + | tig0021157:84800-84819 | Msa1388700:CDS | 35.0% | |
| TCTATATCTATGGGTGAGAA+GGG | + | tig0021157:84801-84820 | Msa1388700:CDS | 35.0% | |
| TGATATGGGATGTAGCAATT+TGG | + | tig0021157:85069-85088 | Msa1388700:intron | 35.0% | |
| GATATGGGATGTAGCAATTT+GGG | + | tig0021157:85070-85089 | Msa1388700:intron | 35.0% | |
| ATGTAGCAATTTGGGTGATT+TGG | + | tig0021157:85078-85097 | Msa1388700:intron | 35.0% | |
| !! | GGTTTTTACTGTTTTTCTGC+AGG | + | tig0021157:85351-85370 | Msa1388700:intron | 35.0% |
| TAACACCAACCAAAAAACCA+AGG | - | tig0021157:85431-85450 | None:intergenic | 35.0% | |
| AAACTCCCAAAGAAACCAAA+CGG | - | tig0021157:85526-85545 | None:intergenic | 35.0% | |
| !!! | TCCCTTTGTTTTCCTTGATA+AGG | + | tig0021157:85574-85593 | Msa1388700:intron | 35.0% |
| CCCTTATCAAGGAAAACAAA+GGG | - | tig0021157:85578-85597 | None:intergenic | 35.0% | |
| !!! | CCCTTTGTTTTCCTTGATAA+GGG | + | tig0021157:85575-85594 | Msa1388700:intron | 35.0% |
| ACCCTTATCAAGGAAAACAA+AGG | - | tig0021157:85579-85598 | None:intergenic | 35.0% | |
| TCATAGATGAATTATGGTCG+TGG | - | tig0021157:85684-85703 | None:intergenic | 35.0% | |
| TCTCAAAATCAAGAGGAAGA+AGG | + | tig0021157:85814-85833 | Msa1388700:CDS | 35.0% | |
| AGTCATCTGGCATATTATGA+TGG | - | tig0021157:85855-85874 | None:intergenic | 35.0% | |
| TTCCAAATAGTCAAGTCATC+TGG | - | tig0021157:85868-85887 | None:intergenic | 35.0% | |
| AGATGACTTGACTATTTGGA+AGG | + | tig0021157:85867-85886 | Msa1388700:CDS | 35.0% | |
| TGGAACAAGAGCTCTTAAAA+TGG | + | tig0021157:86001-86020 | Msa1388700:CDS | 35.0% | |
| !! | GATTGATTTAGAGGTACCTG+TGG | - | tig0021157:83878-83897 | None:intergenic | 40.0% |
| GATGGCATAGTGTTTATGTG+TGG | - | tig0021157:83929-83948 | None:intergenic | 40.0% | |
| TTGAGGTATAGTAGCTGATG+GGG | - | tig0021157:83993-84012 | None:intergenic | 40.0% | |
| CTCTTGACCAGAAGTTGTTA+TGG | + | tig0021157:84330-84349 | Msa1388700:CDS | 40.0% | |
| ! | ATTGGCTCAGAGATGTACTT+TGG | - | tig0021157:84669-84688 | None:intergenic | 40.0% |
| AGTACATCTCTGAGCCAATA+TGG | + | tig0021157:84670-84689 | Msa1388700:CDS | 40.0% | |
| CACTCGTAGTACATACAAGT+CGG | - | tig0021157:85212-85231 | None:intergenic | 40.0% | |
| TCATCTATTCAAGCATTCCC+GGG | - | tig0021157:85246-85265 | None:intergenic | 40.0% | |
| GTCATCTATTCAAGCATTCC+CGG | - | tig0021157:85247-85266 | None:intergenic | 40.0% | |
| GGAATGCTTGAATAGATGAC+TGG | + | tig0021157:85247-85266 | Msa1388700:intron | 40.0% | |
| ! | TTTTTCTGCAGGGACTGATT+TGG | + | tig0021157:85362-85381 | Msa1388700:intron | 40.0% |
| !!! | TTTGTGCAGCCTTGGTTTTT+TGG | + | tig0021157:85419-85438 | Msa1388700:CDS | 40.0% |
| !!! | GGTTTTTTGGTTGGTGTTAG+TGG | + | tig0021157:85432-85451 | Msa1388700:CDS | 40.0% |
| ! | TTAGTGTCTGTGTTGTTAGC+AGG | + | tig0021157:85481-85500 | Msa1388700:intron | 40.0% |
| ! | CTTAGCCGTTTGGTTTCTTT+GGG | + | tig0021157:85518-85537 | Msa1388700:intron | 40.0% |
| ! | AATTATGGTCGTGGCTGTTT+TGG | - | tig0021157:85675-85694 | None:intergenic | 40.0% |
| ! | GAAGAGAAAAGCAGAGCTTT+TGG | + | tig0021157:85780-85799 | Msa1388700:CDS | 40.0% |
| TGCCAGATGACTTGACTATT+TGG | + | tig0021157:85863-85882 | Msa1388700:CDS | 40.0% | |
| GTAGCTCCCAAAGGTAAAAA+AGG | + | tig0021157:85892-85911 | Msa1388700:CDS | 40.0% | |
| !! | TCTGGAAGAGGTACTAACAG+AGG | + | tig0021157:83770-83789 | Msa1388700:CDS | 45.0% |
| ACCTACTATACCATCTCCAC+AGG | + | tig0021157:83859-83878 | Msa1388700:CDS | 45.0% | |
| ACCTGTGGAGATGGTATAGT+AGG | - | tig0021157:83863-83882 | None:intergenic | 45.0% | |
| !! | TTTAGAGGTACCTGTGGAGA+TGG | - | tig0021157:83872-83891 | None:intergenic | 45.0% |
| ! | GGTATGGTAGTTGATGCGTT+CGG | - | tig0021157:84025-84044 | None:intergenic | 45.0% |
| ATGGCAGATGATTGAGTGTG+TGG | - | tig0021157:84070-84089 | None:intergenic | 45.0% | |
| CATACGGCTCTATTTCGTCA+AGG | - | tig0021157:84129-84148 | None:intergenic | 45.0% | |
| CTTGACGAAATAGAGCCGTA+TGG | + | tig0021157:84127-84146 | Msa1388700:CDS | 45.0% | |
| GCAAATCGTGCTTCAACTCA+AGG | + | tig0021157:84756-84775 | Msa1388700:CDS | 45.0% | |
| TGCTCTTTGCCACATTCGAA+AGG | + | tig0021157:84955-84974 | Msa1388700:CDS | 45.0% | |
| AGGAGGTAAAGGTTATGTCG+TGG | + | tig0021157:85159-85178 | Msa1388700:intron | 45.0% | |
| AGGTAAAGGTTATGTCGTGG+AGG | + | tig0021157:85162-85181 | Msa1388700:intron | 45.0% | |
| TAAAGGTTATGTCGTGGAGG+TGG | + | tig0021157:85165-85184 | Msa1388700:intron | 45.0% | |
| CGACTTGTATGTACTACGAG+TGG | + | tig0021157:85210-85229 | Msa1388700:intron | 45.0% | |
| GTATGTACTACGAGTGGTGT+TGG | + | tig0021157:85216-85235 | Msa1388700:intron | 45.0% | |
| CATCTATTCAAGCATTCCCG+GGG | - | tig0021157:85245-85264 | None:intergenic | 45.0% | |
| !!! | GGCTTTTTTGTTTTCCCTGC+TGG | + | tig0021157:85268-85287 | Msa1388700:intron | 45.0% |
| !!! | TTTTGTTTTCCCTGCTGGTG+TGG | + | tig0021157:85273-85292 | Msa1388700:intron | 45.0% |
| !!! | TGTGGCGCTGCTGTTTTTAT+TGG | + | tig0021157:85291-85310 | Msa1388700:intron | 45.0% |
| ! | GTTTTCCTGCTTCTGTAGCT+TGG | + | tig0021157:85318-85337 | Msa1388700:intron | 45.0% |
| CTGCTTCTGTAGCTTGGTTA+GGG | + | tig0021157:85324-85343 | Msa1388700:intron | 45.0% | |
| !!! | TGCAGCCTTGGTTTTTTGGT+TGG | + | tig0021157:85423-85442 | Msa1388700:CDS | 45.0% |
| !! | GGTTGGTGTTAGTGGATTTC+AGG | + | tig0021157:85440-85459 | Msa1388700:CDS | 45.0% |
| !! | GTTAGTGGATTTCAGGCTTC+AGG | + | tig0021157:85447-85466 | Msa1388700:CDS | 45.0% |
| ! | TGGATTTCAGGCTTCAGGTT+TGG | + | tig0021157:85452-85471 | Msa1388700:intron | 45.0% |
| ! | GCTTAGCCGTTTGGTTTCTT+TGG | + | tig0021157:85517-85536 | Msa1388700:intron | 45.0% |
| CAAGCAAAGTTTGGAGGCAA+TGG | - | tig0021157:86150-86169 | None:intergenic | 45.0% | |
| GAGGCTTCAGCAACATCATT+TGG | - | tig0021157:86195-86214 | None:intergenic | 45.0% | |
| !!! | TAAATTCTTAAAATTTTTAT+CGG | - | tig0021157:84721-84740 | None:intergenic | 5.0% |
| !! | GGAAGAGGTACTAACAGAGG+TGG | + | tig0021157:83773-83792 | Msa1388700:CDS | 50.0% |
| ! | GAGGTACTAACAGAGGTGGA+AGG | + | tig0021157:83777-83796 | Msa1388700:CDS | 50.0% |
| GGAAGGACTTTATCCTCACG+AGG | + | tig0021157:83794-83813 | Msa1388700:CDS | 50.0% | |
| !! | GTTGGTGACGGTGATGATGA+TGG | - | tig0021157:83947-83966 | None:intergenic | 50.0% |
| !! | GTTGGGGTTTGAGTTGGTGA+CGG | - | tig0021157:83959-83978 | None:intergenic | 50.0% |
| !! | GTTGGTGTTGGGGTTTGAGT+TGG | - | tig0021157:83965-83984 | None:intergenic | 50.0% |
| !! | ATGGGGTTGGAGTTGGTGTT+GGG | - | tig0021157:83976-83995 | None:intergenic | 50.0% |
| GGTATAGTAGCTGATGGGGT+TGG | - | tig0021157:83989-84008 | None:intergenic | 50.0% | |
| ! | GCGTTCGGAGTTGGATTTTG+AGG | - | tig0021157:84010-84029 | None:intergenic | 50.0% |
| ! | GTAGTTGATGCGTTCGGAGT+TGG | - | tig0021157:84019-84038 | None:intergenic | 50.0% |
| AGAGATGCATGTCCCCATGT+AGG | - | tig0021157:84314-84333 | None:intergenic | 50.0% | |
| GGTAGCTCCATTCATACTGC+TGG | + | tig0021157:84777-84796 | Msa1388700:CDS | 50.0% | |
| GATTGCTAGGTGGGATGACT+TGG | + | tig0021157:85133-85152 | Msa1388700:intron | 50.0% | |
| !! | TGACTTGGTGGAGGAGGTAA+AGG | + | tig0021157:85148-85167 | Msa1388700:CDS | 50.0% |
| ATGTCGTGGAGGTGGTTGTT+AGG | + | tig0021157:85173-85192 | Msa1388700:intron | 50.0% | |
| CCTAACCAAGCTACAGAAGC+AGG | - | tig0021157:85326-85345 | None:intergenic | 50.0% | |
| CCTGCTTCTGTAGCTTGGTT+AGG | + | tig0021157:85323-85342 | Msa1388700:intron | 50.0% | |
| !!! | TTTGGCCAGCTGCTGGTTTT+TGG | + | tig0021157:85380-85399 | Msa1388700:CDS | 50.0% |
| !!! | TTGGCCAGCTGCTGGTTTTT+GGG | + | tig0021157:85381-85400 | Msa1388700:CDS | 50.0% |
| ! | GTGTCTGTGTTGTTAGCAGG+TGG | + | tig0021157:85484-85503 | Msa1388700:intron | 50.0% |
| TGTTGTTAGCAGGTGGTGTG+TGG | + | tig0021157:85491-85510 | Msa1388700:intron | 50.0% | |
| TATTGAGTGGCTGCCATCAC+AGG | + | tig0021157:85606-85625 | Msa1388700:intron | 50.0% | |
| CCAAACGCAGTTACCTGTGA+TGG | - | tig0021157:85622-85641 | None:intergenic | 50.0% | |
| CCATCACAGGTAACTGCGTT+TGG | + | tig0021157:85619-85638 | Msa1388700:intron | 50.0% | |
| !!! | TGGTCGTGGCTGTTTTGGTT+AGG | - | tig0021157:85670-85689 | None:intergenic | 50.0% |
| TGGAAGGAAGTAGCTCCCAA+AGG | + | tig0021157:85883-85902 | Msa1388700:CDS | 50.0% | |
| GTCGCACAAGCAAAGTTTGG+AGG | - | tig0021157:86156-86175 | None:intergenic | 50.0% | |
| ! | GGTGTCGCACAAGCAAAGTT+TGG | - | tig0021157:86159-86178 | None:intergenic | 50.0% |
| TCCCTCTGCCAGTTGAGTGT+CGG | - | tig0021157:83820-83839 | None:intergenic | 55.0% | |
| !! | TGGGGTTGGAGTTGGTGTTG+GGG | - | tig0021157:83975-83994 | None:intergenic | 55.0% |
| !! | GATGGGGTTGGAGTTGGTGT+TGG | - | tig0021157:83977-83996 | None:intergenic | 55.0% |
| GTAGCTGATGGGGTTGGAGT+TGG | - | tig0021157:83983-84002 | None:intergenic | 55.0% | |
| CTATGGGTGAGAAGGGACGT+AGG | + | tig0021157:84808-84827 | Msa1388700:CDS | 55.0% | |
| GCAAATACCTCCTCCACTGC+AGG | - | tig0021157:84938-84957 | None:intergenic | 55.0% | |
| ! | TGCTAGGTGGGATGACTTGG+TGG | + | tig0021157:85136-85155 | Msa1388700:CDS | 55.0% |
| !! | TAGGTGGGATGACTTGGTGG+AGG | + | tig0021157:85139-85158 | Msa1388700:CDS | 55.0% |
| ! | ACGAGTGGTGTTGGAATCCC+CGG | + | tig0021157:85225-85244 | Msa1388700:intron | 55.0% |
| CTGTAGCTTGGTTAGGGAGC+TGG | + | tig0021157:85330-85349 | Msa1388700:intron | 55.0% | |
| !!! | CCAGCTGCTGGTTTTTGGGT+GGG | + | tig0021157:85385-85404 | Msa1388700:CDS | 55.0% |
| !!! | CAGCTGCTGGTTTTTGGGTG+GGG | + | tig0021157:85386-85405 | Msa1388700:CDS | 55.0% |
| ! | TCAGGCTTCAGGTTTGGCAG+TGG | + | tig0021157:85458-85477 | Msa1388700:intron | 55.0% |
| GTTAGCAGGTGGTGTGTGGA+AGG | + | tig0021157:85495-85514 | Msa1388700:intron | 55.0% | |
| GTGTGGAAGGCTTAGCCGTT+TGG | + | tig0021157:85508-85527 | Msa1388700:intron | 55.0% | |
| TTTGGACAGCTGTCTGCGCA+CGG | + | tig0021157:85637-85656 | Msa1388700:intron | 55.0% | |
| !! | AGTTGAGTGTCGGCCTCGTG+AGG | - | tig0021157:83810-83829 | None:intergenic | 60.0% |
| TCACGAGGCCGACACTCAAC+TGG | + | tig0021157:83809-83828 | Msa1388700:CDS | 60.0% | |
| GCCGACACTCAACTGGCAGA+GGG | + | tig0021157:83816-83835 | Msa1388700:CDS | 60.0% | |
| GGGTGAGAAGGGACGTAGGA+TGG | + | tig0021157:84812-84831 | Msa1388700:CDS | 60.0% | |
| !! | GTGGGATGACTTGGTGGAGG+AGG | + | tig0021157:85142-85161 | Msa1388700:CDS | 60.0% |
| ! | CGAGTGGTGTTGGAATCCCC+GGG | + | tig0021157:85226-85245 | Msa1388700:intron | 60.0% |
| !! | GGACTGATTTGGCCAGCTGC+TGG | + | tig0021157:85373-85392 | Msa1388700:CDS | 60.0% |
| !!! | GCCAGCTGCTGGTTTTTGGG+TGG | + | tig0021157:85384-85403 | Msa1388700:CDS | 60.0% |
| CCCACCCAAAAACCAGCAGC+TGG | - | tig0021157:85388-85407 | None:intergenic | 60.0% | |
| CGCTGGTGTTTGTGCAGCCT+TGG | + | tig0021157:85411-85430 | Msa1388700:CDS | 60.0% | |
| GGCCGACACTCAACTGGCAG+AGG | + | tig0021157:83815-83834 | Msa1388700:CDS | 65.0% | |
| AACAGGAGCCACGCCTGCAG+TGG | + | tig0021157:84922-84941 | Msa1388700:CDS | 65.0% | |
| TACCTCCTCCACTGCAGGCG+TGG | - | tig0021157:84933-84952 | None:intergenic | 65.0% | |
| ACAGCAGCGCCACACCAGCA+GGG | - | tig0021157:85285-85304 | None:intergenic | 65.0% | |
| AACAGCAGCGCCACACCAGC+AGG | - | tig0021157:85286-85305 | None:intergenic | 65.0% | |
| !!! | GGTTTTTGGGTGGGGTGCGC+TGG | + | tig0021157:85394-85413 | Msa1388700:CDS | 65.0% |
| AGGAGCCACGCCTGCAGTGG+AGG | + | tig0021157:84925-84944 | Msa1388700:CDS | 70.0% | |
| AGCCACGCCTGCAGTGGAGG+AGG | + | tig0021157:84928-84947 | Msa1388700:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021157 | gene | 83767 | 86251 | 83767 | ID=Msa1388700;Name=Msa1388700 |
| tig0021157 | mRNA | 83767 | 86251 | 83767 | ID=Msa1388700-mRNA-1;Parent=Msa1388700;Name=Msa1388700-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0|0|0|0.14|1|1|7|0|473 |
| tig0021157 | exon | 83767 | 84155 | 83767 | ID=Msa1388700-mRNA-1:exon:11245;Parent=Msa1388700-mRNA-1 |
| tig0021157 | exon | 84244 | 84367 | 84244 | ID=Msa1388700-mRNA-1:exon:11246;Parent=Msa1388700-mRNA-1 |
| tig0021157 | exon | 84642 | 84833 | 84642 | ID=Msa1388700-mRNA-1:exon:11247;Parent=Msa1388700-mRNA-1 |
| tig0021157 | exon | 84914 | 85015 | 84914 | ID=Msa1388700-mRNA-1:exon:11248;Parent=Msa1388700-mRNA-1 |
| tig0021157 | exon | 85134 | 85169 | 85134 | ID=Msa1388700-mRNA-1:exon:11249;Parent=Msa1388700-mRNA-1 |
| tig0021157 | exon | 85373 | 85468 | 85373 | ID=Msa1388700-mRNA-1:exon:11250;Parent=Msa1388700-mRNA-1 |
| tig0021157 | exon | 85769 | 86251 | 85769 | ID=Msa1388700-mRNA-1:exon:11251;Parent=Msa1388700-mRNA-1 |
| tig0021157 | CDS | 83767 | 84155 | 83767 | ID=Msa1388700-mRNA-1:cds;Parent=Msa1388700-mRNA-1 |
| tig0021157 | CDS | 84244 | 84367 | 84244 | ID=Msa1388700-mRNA-1:cds;Parent=Msa1388700-mRNA-1 |
| tig0021157 | CDS | 84642 | 84833 | 84642 | ID=Msa1388700-mRNA-1:cds;Parent=Msa1388700-mRNA-1 |
| tig0021157 | CDS | 84914 | 85015 | 84914 | ID=Msa1388700-mRNA-1:cds;Parent=Msa1388700-mRNA-1 |
| tig0021157 | CDS | 85134 | 85169 | 85134 | ID=Msa1388700-mRNA-1:cds;Parent=Msa1388700-mRNA-1 |
| tig0021157 | CDS | 85373 | 85468 | 85373 | ID=Msa1388700-mRNA-1:cds;Parent=Msa1388700-mRNA-1 |
| tig0021157 | CDS | 85769 | 86251 | 85769 | ID=Msa1388700-mRNA-1:cds;Parent=Msa1388700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
