Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797170 | XP_039684018.1 | 93.125 | 160 | 11 | 0 | 67 | 226 | 107 | 266 | 2.72e-91 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797170 | G7JTV3 | 92.517 | 147 | 11 | 0 | 67 | 213 | 36 | 182 | 5.19e-82 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018650 | Msa0797170 | 0.801841 | 7.442486e-49 | -8.615850e-47 |
| Msa0623080 | Msa0797170 | 0.810532 | 1.100271e-50 | -8.615850e-47 |
| Msa0693380 | Msa0797170 | 0.811418 | 7.070848e-51 | -8.615850e-47 |
| Msa0701010 | Msa0797170 | 0.833268 | 5.880945e-56 | -8.615850e-47 |
| Msa0731940 | Msa0797170 | 0.836720 | 7.929017e-57 | -8.615850e-47 |
| Msa0735170 | Msa0797170 | 0.808473 | 3.044496e-50 | -8.615850e-47 |
| Msa0766630 | Msa0797170 | 0.808529 | 2.961775e-50 | -8.615850e-47 |
| Msa0797170 | Msa0810220 | 0.811309 | 7.468473e-51 | -8.615850e-47 |
| Msa0797170 | Msa0820850 | 0.801603 | 8.329961e-49 | -8.615850e-47 |
| Msa0797170 | Msa0828940 | 0.805043 | 1.614937e-49 | -8.615850e-47 |
| Msa0797170 | Msa0849030 | 0.807472 | 4.971651e-50 | -8.615850e-47 |
| Msa0797170 | Msa0857640 | 0.814916 | 1.207411e-51 | -8.615850e-47 |
| Msa0797170 | Msa0861130 | 0.804185 | 2.439409e-49 | -8.615850e-47 |
| Msa0797170 | Msa0877250 | 0.827807 | 1.276028e-54 | -8.615850e-47 |
| Msa0797170 | Msa0907070 | 0.808856 | 2.521624e-50 | -8.615850e-47 |
| Msa0797170 | Msa0953120 | 0.807759 | 4.319781e-50 | -8.615850e-47 |
| Msa0797170 | Msa0956270 | 0.802818 | 4.684508e-49 | -8.615850e-47 |
| Msa0797170 | Msa0969520 | 0.801870 | 7.343053e-49 | -8.615850e-47 |
| Msa0797170 | Msa0975220 | 0.809686 | 1.673610e-50 | -8.615850e-47 |
| Msa0797170 | Msa0980090 | 0.807980 | 3.877385e-50 | -8.615850e-47 |
| Msa0797170 | Msa0983090 | 0.827997 | 1.148186e-54 | -8.615850e-47 |
| Msa0797170 | Msa0998690 | 0.817522 | 3.156521e-52 | -8.615850e-47 |
| Msa0797170 | Msa1000250 | 0.802615 | 5.156881e-49 | -8.615850e-47 |
| Msa0797170 | Msa1000890 | 0.801910 | 7.203616e-49 | -8.615850e-47 |
| Msa0797170 | Msa1003620 | 0.803052 | 4.190409e-49 | -8.615850e-47 |
| Msa0797170 | Msa1014540 | 0.826953 | 2.044310e-54 | -8.615850e-47 |
| Msa0797170 | Msa1015490 | 0.811576 | 6.535011e-51 | -8.615850e-47 |
| Msa0797170 | Msa1030970 | 0.811905 | 5.542204e-51 | -8.615850e-47 |
| Msa0797170 | Msa1052330 | 0.806265 | 8.947594e-50 | -8.615850e-47 |
| Msa0797170 | Msa1075220 | -0.804611 | 1.987590e-49 | -8.615850e-47 |
| Msa0797170 | Msa1082500 | 0.804862 | 1.762070e-49 | -8.615850e-47 |
| Msa0797170 | Msa1082580 | 0.813141 | 2.974609e-51 | -8.615850e-47 |
| Msa0797170 | Msa1107800 | 0.801352 | 9.378022e-49 | -8.615850e-47 |
| Msa0797170 | Msa1156020 | 0.831469 | 1.639852e-55 | -8.615850e-47 |
| Msa0797170 | Msa1162550 | -0.810409 | 1.169531e-50 | -8.615850e-47 |
| Msa0797170 | Msa1179120 | 0.800144 | 1.654045e-48 | -8.615850e-47 |
| Msa0797170 | Msa1186950 | -0.815233 | 1.026558e-51 | -8.615850e-47 |
| Msa0797170 | Msa1233890 | 0.808633 | 2.814459e-50 | -8.615850e-47 |
| Msa0797170 | Msa1239530 | 0.811596 | 6.468719e-51 | -8.615850e-47 |
| Msa0797170 | Msa1244250 | 0.811298 | 7.508257e-51 | -8.615850e-47 |
| Msa0797170 | Msa1249490 | 0.810662 | 1.030952e-50 | -8.615850e-47 |
| Msa0797170 | Msa1273920 | 0.802789 | 4.748352e-49 | -8.615850e-47 |
| Msa0797170 | Msa1277660 | 0.808778 | 2.619816e-50 | -8.615850e-47 |
| Msa0797170 | Msa1282580 | -0.813415 | 2.589937e-51 | -8.615850e-47 |
| Msa0797170 | Msa1284680 | 0.804897 | 1.732426e-49 | -8.615850e-47 |
| Msa0797170 | Msa1310210 | 0.808748 | 2.659273e-50 | -8.615850e-47 |
| Msa0797170 | Msa1314170 | 0.802136 | 6.474732e-49 | -8.615850e-47 |
| Msa0797170 | Msa1362880 | 0.821507 | 3.893017e-53 | -8.615850e-47 |
| Msa0797170 | Msa1369530 | 0.801722 | 7.874330e-49 | -8.615850e-47 |
| Msa0797170 | Msa1388700 | 0.860235 | 2.378737e-63 | -8.615850e-47 |
| Msa0797170 | Msa1419960 | 0.803059 | 4.177115e-49 | -8.615850e-47 |
| Msa0797170 | Msa1424750 | 0.802019 | 6.840778e-49 | -8.615850e-47 |
| Msa0797170 | Msa1427230 | 0.805682 | 1.186522e-49 | -8.615850e-47 |
| Msa0797170 | Msa1451620 | -0.811981 | 5.334966e-51 | -8.615850e-47 |
| Msa0175740 | Msa0797170 | 0.804504 | 2.092985e-49 | -8.615850e-47 |
| Msa0178960 | Msa0797170 | 0.825814 | 3.818372e-54 | -8.615850e-47 |
| Msa0178970 | Msa0797170 | 0.812943 | 3.287174e-51 | -8.615850e-47 |
| Msa0197660 | Msa0797170 | 0.824971 | 6.045430e-54 | -8.615850e-47 |
| Msa0223260 | Msa0797170 | 0.812818 | 3.501054e-51 | -8.615850e-47 |
| Msa0376590 | Msa0797170 | 0.811903 | 5.545764e-51 | -8.615850e-47 |
| Msa0401310 | Msa0797170 | 0.813130 | 2.991419e-51 | -8.615850e-47 |
| Msa0424320 | Msa0797170 | 0.827561 | 1.461810e-54 | -8.615850e-47 |
| Msa0466390 | Msa0797170 | 0.816044 | 6.772716e-52 | -8.615850e-47 |
| Msa0239800 | Msa0797170 | 0.820274 | 7.478802e-53 | -8.615850e-47 |
| Msa0279790 | Msa0797170 | 0.800747 | 1.246403e-48 | -8.615850e-47 |
| Msa0317510 | Msa0797170 | 0.825686 | 4.095324e-54 | -8.615850e-47 |
| Msa0340450 | Msa0797170 | 0.824711 | 6.961373e-54 | -8.615850e-47 |
| Msa0344830 | Msa0797170 | 0.814875 | 1.233198e-51 | -8.615850e-47 |
| Msa0350990 | Msa0797170 | 0.822976 | 1.775341e-53 | -8.615850e-47 |
| Msa0351030 | Msa0797170 | 0.820553 | 6.453146e-53 | -8.615850e-47 |
| Msa0495330 | Msa0797170 | 0.800576 | 1.350539e-48 | -8.615850e-47 |
| Msa0512750 | Msa0797170 | 0.824659 | 7.161486e-54 | -8.615850e-47 |
| Msa0516370 | Msa0797170 | 0.803586 | 3.248080e-49 | -8.615850e-47 |
| Msa0523940 | Msa0797170 | 0.841913 | 3.559851e-58 | -8.615850e-47 |
| Msa0558690 | Msa0797170 | 0.814922 | 1.203362e-51 | -8.615850e-47 |
| Msa0562440 | Msa0797170 | 0.826178 | 3.127627e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGCTCAAATATCTTTA+AGG | 0.125204 | 5_3:-9258250 | Msa0797170:CDS |
| ATCATCATTGTTTGCATTAG+AGG | 0.184290 | 5_3:+9258008 | None:intergenic |
| TGCCAGATGACTTGACTATT+TGG | 0.234675 | 5_3:-9258356 | Msa0797170:CDS |
| GAAGAGAAAAGCAGAGCTTT+TGG | 0.280604 | 5_3:-9258439 | Msa0797170:CDS |
| AAAGGAAAACTATATGGTTT+AGG | 0.310844 | 5_3:-9258309 | Msa0797170:CDS |
| TGGAACAAGAGCTCTTAAAA+TGG | 0.322348 | 5_3:-9258218 | Msa0797170:CDS |
| CCAAGGTCATAATTTGTATA+AGG | 0.341243 | 5_3:+9258947 | None:intergenic |
| CTATATGGTTTAGGTTCTAT+AGG | 0.343666 | 5_3:-9258300 | Msa0797170:CDS |
| GAGGCTTCAGCAACATCATT+TGG | 0.358136 | 5_3:+9258027 | None:intergenic |
| GAAGGGATTTAAGAAGTTAC+TGG | 0.361649 | 5_3:-9259008 | Msa0797170:intron |
| TCATTTGGTTCATCTTGAAT+AGG | 0.364266 | 5_3:+9258042 | None:intergenic |
| AATGCTTCGAAGTATACTAT+TGG | 0.390634 | 5_3:-9258273 | Msa0797170:CDS |
| GGTGTCGCACAAGCAAAGTT+TGG | 0.399282 | 5_3:+9258063 | None:intergenic |
| GGAACTCATATGGTTAGATA+TGG | 0.401345 | 5_3:-9259417 | None:intergenic |
| TTCCAAATAGTCAAGTCATC+TGG | 0.478583 | 5_3:+9258354 | None:intergenic |
| ATAAGGAGCATTGTAGCATC+TGG | 0.488519 | 5_3:+9258964 | None:intergenic |
| GCTCTTAAAATGGAAAGAAA+AGG | 0.497086 | 5_3:-9258208 | Msa0797170:CDS |
| CCTTATACAAATTATGACCT+TGG | 0.507271 | 5_3:-9258947 | Msa0797170:CDS |
| ATGGTTAGATATGGAACCCT+CGG | 0.513594 | 5_3:-9259408 | Msa0797170:CDS |
| CAAGCAAAGTTTGGAGGCAA+TGG | 0.532892 | 5_3:+9258072 | None:intergenic |
| AGTCATCTGGCATATTATGA+TGG | 0.535927 | 5_3:+9258367 | None:intergenic |
| TGCTTACTTAGATAGCTATC+CGG | 0.548765 | 5_3:-9259382 | Msa0797170:CDS |
| ATCTATGTCTCAAAATCAAG+AGG | 0.574405 | 5_3:-9258412 | Msa0797170:CDS |
| TGGTTAGATATGGAACCCTC+GGG | 0.582502 | 5_3:-9259407 | Msa0797170:CDS |
| ATGTCTCAAAATCAAGAGGA+AGG | 0.589667 | 5_3:-9258408 | Msa0797170:CDS |
| AGATGACTTGACTATTTGGA+AGG | 0.595353 | 5_3:-9258352 | Msa0797170:CDS |
| GTCGCACAAGCAAAGTTTGG+AGG | 0.597843 | 5_3:+9258066 | None:intergenic |
| TATCTAAGTAAGCATTCCCG+AGG | 0.640376 | 5_3:+9259391 | None:intergenic |
| TTACTTAGATAGCTATCCGG+TGG | 0.652151 | 5_3:-9259379 | Msa0797170:intron |
| TCTCAAAATCAAGAGGAAGG+AGG | 0.661677 | 5_3:-9258405 | Msa0797170:CDS |
| TGGAAGGAAGTAGCTCCCAA+AGG | 0.672251 | 5_3:-9258336 | Msa0797170:CDS |
| ATCTAAGTAAGCATTCCCGA+GGG | 0.697158 | 5_3:+9259392 | None:intergenic |
| ATACACACACTAAAACACCA+AGG | 0.790834 | 5_3:+9258930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTATAAGAAAATGT+TGG | - | chr5_3:9258737-9258756 | Msa0797170:intron | 15.0% |
| !!! | CTAAAATTACAGATTTTAAT+TGG | - | chr5_3:9258888-9258907 | Msa0797170:CDS | 15.0% |
| !!! | TTTTTTCTATAAGAAAATGT+TGG | - | chr5_3:9258737-9258756 | Msa0797170:intron | 15.0% |
| !!! | CTAAAATTACAGATTTTAAT+TGG | - | chr5_3:9258888-9258907 | Msa0797170:CDS | 15.0% |
| !!! | TTTCTTTTTTTAGCTAGTTT+TGG | - | chr5_3:9258101-9258120 | Msa0797170:CDS | 20.0% |
| !! | GTAAAATCATAGATGAATTA+TGG | + | chr5_3:9258869-9258888 | None:intergenic | 20.0% |
| !! | TAACATAATTCAAAATTGCA+GGG | - | chr5_3:9258927-9258946 | Msa0797170:CDS | 20.0% |
| !!! | TATCTTTAAGGAAAAAAACA+TGG | - | chr5_3:9259160-9259179 | Msa0797170:intron | 20.0% |
| !!! | TTTCTTTTTTTAGCTAGTTT+TGG | - | chr5_3:9258101-9258120 | Msa0797170:CDS | 20.0% |
| !! | GTAAAATCATAGATGAATTA+TGG | + | chr5_3:9258869-9258888 | None:intergenic | 20.0% |
| !! | TAACATAATTCAAAATTGCA+GGG | - | chr5_3:9258927-9258946 | Msa0797170:CDS | 20.0% |
| !!! | TATCTTTAAGGAAAAAAACA+TGG | - | chr5_3:9259160-9259179 | Msa0797170:intron | 20.0% |
| !!! | GCTGTTTTTTTTTTCTGTTT+TGG | - | chr5_3:9258251-9258270 | Msa0797170:CDS | 25.0% |
| !!! | ATACTTTTGGTGTTTTATTG+TGG | - | chr5_3:9258514-9258533 | Msa0797170:intron | 25.0% |
| ! | ATGGAAATGAAATATGTATG+TGG | - | chr5_3:9258623-9258642 | Msa0797170:intron | 25.0% |
| !!! | AACACTCTTTGATTTTATGT+TGG | - | chr5_3:9258762-9258781 | Msa0797170:intron | 25.0% |
| ! | CTAACATAATTCAAAATTGC+AGG | - | chr5_3:9258926-9258945 | Msa0797170:CDS | 25.0% |
| !!! | AGTTTTCCTTTTTTACCTTT+GGG | + | chr5_3:9259080-9259099 | None:intergenic | 25.0% |
| !!! | TAGTTTTCCTTTTTTACCTT+TGG | + | chr5_3:9259081-9259100 | None:intergenic | 25.0% |
| ! | GGTAAAAAAGGAAAACTATA+TGG | - | chr5_3:9259083-9259102 | Msa0797170:intron | 25.0% |
| ! | AAAGGAAAACTATATGGTTT+AGG | - | chr5_3:9259089-9259108 | Msa0797170:intron | 25.0% |
| ! | TTCATGCTCAAATATCTTTA+AGG | - | chr5_3:9259148-9259167 | Msa0797170:intron | 25.0% |
| !!! | GCTGTTTTTTTTTTCTGTTT+TGG | - | chr5_3:9258251-9258270 | Msa0797170:CDS | 25.0% |
| !!! | ATACTTTTGGTGTTTTATTG+TGG | - | chr5_3:9258514-9258533 | Msa0797170:intron | 25.0% |
| ! | ATGGAAATGAAATATGTATG+TGG | - | chr5_3:9258623-9258642 | Msa0797170:intron | 25.0% |
| !!! | AACACTCTTTGATTTTATGT+TGG | - | chr5_3:9258762-9258781 | Msa0797170:intron | 25.0% |
| ! | CTAACATAATTCAAAATTGC+AGG | - | chr5_3:9258926-9258945 | Msa0797170:CDS | 25.0% |
| !!! | AGTTTTCCTTTTTTACCTTT+GGG | + | chr5_3:9259080-9259099 | None:intergenic | 25.0% |
| !!! | TAGTTTTCCTTTTTTACCTT+TGG | + | chr5_3:9259081-9259100 | None:intergenic | 25.0% |
| ! | GGTAAAAAAGGAAAACTATA+TGG | - | chr5_3:9259083-9259102 | Msa0797170:intron | 25.0% |
| ! | AAAGGAAAACTATATGGTTT+AGG | - | chr5_3:9259089-9259108 | Msa0797170:intron | 25.0% |
| ! | TTCATGCTCAAATATCTTTA+AGG | - | chr5_3:9259148-9259167 | Msa0797170:intron | 25.0% |
| !!! | ACTAGAGCAATTTTTTCCAA+TGG | - | chr5_3:9258361-9258380 | Msa0797170:CDS | 30.0% |
| ! | CCAAGGTCATAATTTGTATA+AGG | + | chr5_3:9258454-9258473 | None:intergenic | 30.0% |
| CCTTATACAAATTATGACCT+TGG | - | chr5_3:9258451-9258470 | Msa0797170:CDS | 30.0% | |
| ! | TTTTTCTGTTGGCATACTTT+TGG | - | chr5_3:9258501-9258520 | Msa0797170:intron | 30.0% |
| TAAATCCTCATGTACTACTA+TGG | - | chr5_3:9258604-9258623 | Msa0797170:intron | 30.0% | |
| ATCTATGTCTCAAAATCAAG+AGG | - | chr5_3:9258986-9259005 | Msa0797170:CDS | 30.0% | |
| ! | CTATATGGTTTAGGTTCTAT+AGG | - | chr5_3:9259098-9259117 | Msa0797170:intron | 30.0% |
| AATGCTTCGAAGTATACTAT+TGG | - | chr5_3:9259125-9259144 | Msa0797170:intron | 30.0% | |
| GCTCTTAAAATGGAAAGAAA+AGG | - | chr5_3:9259190-9259209 | Msa0797170:intron | 30.0% | |
| !!! | CCAATTTTTGTTTTTGCTCT+TGG | + | chr5_3:9259238-9259257 | None:intergenic | 30.0% |
| CCAAGAGCAAAAACAAAAAT+TGG | - | chr5_3:9259235-9259254 | Msa0797170:intron | 30.0% | |
| ! | TCATTTGGTTCATCTTGAAT+AGG | + | chr5_3:9259359-9259378 | None:intergenic | 30.0% |
| ATCATCATTGTTTGCATTAG+AGG | + | chr5_3:9259393-9259412 | None:intergenic | 30.0% | |
| !!! | ACTAGAGCAATTTTTTCCAA+TGG | - | chr5_3:9258361-9258380 | Msa0797170:CDS | 30.0% |
| ! | CCAAGGTCATAATTTGTATA+AGG | + | chr5_3:9258454-9258473 | None:intergenic | 30.0% |
| CCTTATACAAATTATGACCT+TGG | - | chr5_3:9258451-9258470 | Msa0797170:CDS | 30.0% | |
| ! | TTTTTCTGTTGGCATACTTT+TGG | - | chr5_3:9258501-9258520 | Msa0797170:intron | 30.0% |
| TAAATCCTCATGTACTACTA+TGG | - | chr5_3:9258604-9258623 | Msa0797170:intron | 30.0% | |
| ATCTATGTCTCAAAATCAAG+AGG | - | chr5_3:9258986-9259005 | Msa0797170:CDS | 30.0% | |
| ! | CTATATGGTTTAGGTTCTAT+AGG | - | chr5_3:9259098-9259117 | Msa0797170:intron | 30.0% |
| AATGCTTCGAAGTATACTAT+TGG | - | chr5_3:9259125-9259144 | Msa0797170:intron | 30.0% | |
| GCTCTTAAAATGGAAAGAAA+AGG | - | chr5_3:9259190-9259209 | Msa0797170:intron | 30.0% | |
| !!! | CCAATTTTTGTTTTTGCTCT+TGG | + | chr5_3:9259238-9259257 | None:intergenic | 30.0% |
| CCAAGAGCAAAAACAAAAAT+TGG | - | chr5_3:9259235-9259254 | Msa0797170:intron | 30.0% | |
| ! | TCATTTGGTTCATCTTGAAT+AGG | + | chr5_3:9259359-9259378 | None:intergenic | 30.0% |
| ATCATCATTGTTTGCATTAG+AGG | + | chr5_3:9259393-9259412 | None:intergenic | 30.0% | |
| TGCTTACTTAGATAGCTATC+CGG | - | chr5_3:9258016-9258035 | Msa0797170:CDS | 35.0% | |
| ACAATGCCAAAAATAACCAC+CGG | + | chr5_3:9258038-9258057 | None:intergenic | 35.0% | |
| !!! | TGTGCTGCTGTTTTTTTTCT+AGG | - | chr5_3:9258190-9258209 | Msa0797170:CDS | 35.0% |
| !!! | TTTTTCCAATGGTGTTGTGA+AGG | - | chr5_3:9258372-9258391 | Msa0797170:CDS | 35.0% |
| !!! | TTTTCCAATGGTGTTGTGAA+GGG | - | chr5_3:9258373-9258392 | Msa0797170:CDS | 35.0% |
| GAAGGGATTTAAGAAGTTAC+TGG | - | chr5_3:9258390-9258409 | Msa0797170:CDS | 35.0% | |
| ATACACACACTAAAACACCA+AGG | + | chr5_3:9258471-9258490 | None:intergenic | 35.0% | |
| !!! | GTGTTTTAGTGTGTGTATCT+CGG | - | chr5_3:9258473-9258492 | Msa0797170:intron | 35.0% |
| !!! | TTTGGTGTTTTATTGTGGTG+AGG | - | chr5_3:9258519-9258538 | Msa0797170:intron | 35.0% |
| CATTTCCATAGTAGTACATG+AGG | + | chr5_3:9258612-9258631 | None:intergenic | 35.0% | |
| TCATAGATGAATTATGGTCG+TGG | + | chr5_3:9258863-9258882 | None:intergenic | 35.0% | |
| ATGTCTCAAAATCAAGAGGA+AGG | - | chr5_3:9258990-9259009 | Msa0797170:CDS | 35.0% | |
| AGTCATCTGGCATATTATGA+TGG | + | chr5_3:9259034-9259053 | None:intergenic | 35.0% | |
| TTCCAAATAGTCAAGTCATC+TGG | + | chr5_3:9259047-9259066 | None:intergenic | 35.0% | |
| AGATGACTTGACTATTTGGA+AGG | - | chr5_3:9259046-9259065 | Msa0797170:intron | 35.0% | |
| TGGAACAAGAGCTCTTAAAA+TGG | - | chr5_3:9259180-9259199 | Msa0797170:intron | 35.0% | |
| TGCTTACTTAGATAGCTATC+CGG | - | chr5_3:9258016-9258035 | Msa0797170:CDS | 35.0% | |
| ACAATGCCAAAAATAACCAC+CGG | + | chr5_3:9258038-9258057 | None:intergenic | 35.0% | |
| !!! | TGTGCTGCTGTTTTTTTTCT+AGG | - | chr5_3:9258190-9258209 | Msa0797170:CDS | 35.0% |
| !!! | TTTTTCCAATGGTGTTGTGA+AGG | - | chr5_3:9258372-9258391 | Msa0797170:CDS | 35.0% |
| !!! | TTTTCCAATGGTGTTGTGAA+GGG | - | chr5_3:9258373-9258392 | Msa0797170:CDS | 35.0% |
| GAAGGGATTTAAGAAGTTAC+TGG | - | chr5_3:9258390-9258409 | Msa0797170:CDS | 35.0% | |
| ATACACACACTAAAACACCA+AGG | + | chr5_3:9258471-9258490 | None:intergenic | 35.0% | |
| !!! | GTGTTTTAGTGTGTGTATCT+CGG | - | chr5_3:9258473-9258492 | Msa0797170:intron | 35.0% |
| !!! | TTTGGTGTTTTATTGTGGTG+AGG | - | chr5_3:9258519-9258538 | Msa0797170:intron | 35.0% |
| CATTTCCATAGTAGTACATG+AGG | + | chr5_3:9258612-9258631 | None:intergenic | 35.0% | |
| TCATAGATGAATTATGGTCG+TGG | + | chr5_3:9258863-9258882 | None:intergenic | 35.0% | |
| ATGTCTCAAAATCAAGAGGA+AGG | - | chr5_3:9258990-9259009 | Msa0797170:CDS | 35.0% | |
| AGTCATCTGGCATATTATGA+TGG | + | chr5_3:9259034-9259053 | None:intergenic | 35.0% | |
| TTCCAAATAGTCAAGTCATC+TGG | + | chr5_3:9259047-9259066 | None:intergenic | 35.0% | |
| AGATGACTTGACTATTTGGA+AGG | - | chr5_3:9259046-9259065 | Msa0797170:intron | 35.0% | |
| TGGAACAAGAGCTCTTAAAA+TGG | - | chr5_3:9259180-9259199 | Msa0797170:intron | 35.0% | |
| ATGGTTAGATATGGAACCCT+CGG | - | chr5_3:9257990-9258009 | Msa0797170:CDS | 40.0% | |
| ATCTAAGTAAGCATTCCCGA+GGG | + | chr5_3:9258009-9258028 | None:intergenic | 40.0% | |
| TATCTAAGTAAGCATTCCCG+AGG | + | chr5_3:9258010-9258029 | None:intergenic | 40.0% | |
| TTACTTAGATAGCTATCCGG+TGG | - | chr5_3:9258019-9258038 | Msa0797170:CDS | 40.0% | |
| !! | AGCTATCCGGTGGTTATTTT+TGG | - | chr5_3:9258029-9258048 | Msa0797170:CDS | 40.0% |
| TGCCTTTAGCAGCTATGTAT+GGG | - | chr5_3:9258124-9258143 | Msa0797170:CDS | 40.0% | |
| !!! | GCTGCTGTTTTTTTTCTAGG+TGG | - | chr5_3:9258193-9258212 | Msa0797170:CDS | 40.0% |
| TCTAGGTGGTTGTTCTTTCT+AGG | - | chr5_3:9258207-9258226 | Msa0797170:CDS | 40.0% | |
| !!! | GGGGTGTTGTATTGTGTTTT+CGG | - | chr5_3:9258297-9258316 | Msa0797170:CDS | 40.0% |
| ACAACTGTCAAGACGAAAGT+TGG | + | chr5_3:9258324-9258343 | None:intergenic | 40.0% | |
| AACTTTCGTCTTGACAGTTG+TGG | - | chr5_3:9258323-9258342 | Msa0797170:CDS | 40.0% | |
| TGACAGTTGTGGCACAAAAT+AGG | - | chr5_3:9258334-9258353 | Msa0797170:CDS | 40.0% | |
| GACAGTTGTGGCACAAAATA+GGG | - | chr5_3:9258335-9258354 | Msa0797170:CDS | 40.0% | |
| AAATCCCTTCACAACACCAT+TGG | + | chr5_3:9258380-9258399 | None:intergenic | 40.0% | |
| !! | ATAAGGAGCATTGTAGCATC+TGG | + | chr5_3:9258437-9258456 | None:intergenic | 40.0% |
| !! | TCTCGGTTCTGTTTTTCTGT+TGG | - | chr5_3:9258490-9258509 | Msa0797170:intron | 40.0% |
| TTAACACTCTTTGCCATCAC+AGG | - | chr5_3:9258785-9258804 | Msa0797170:intron | 40.0% | |
| ! | AATTATGGTCGTGGCTGTTT+TGG | + | chr5_3:9258854-9258873 | None:intergenic | 40.0% |
| ! | GAAGAGAAAAGCAGAGCTTT+TGG | - | chr5_3:9258959-9258978 | Msa0797170:CDS | 40.0% |
| TCTCAAAATCAAGAGGAAGG+AGG | - | chr5_3:9258993-9259012 | Msa0797170:CDS | 40.0% | |
| TGCCAGATGACTTGACTATT+TGG | - | chr5_3:9259042-9259061 | Msa0797170:intron | 40.0% | |
| GTAGCTCCCAAAGGTAAAAA+AGG | - | chr5_3:9259071-9259090 | Msa0797170:intron | 40.0% | |
| ATGGTTAGATATGGAACCCT+CGG | - | chr5_3:9257990-9258009 | Msa0797170:CDS | 40.0% | |
| ATCTAAGTAAGCATTCCCGA+GGG | + | chr5_3:9258009-9258028 | None:intergenic | 40.0% | |
| TATCTAAGTAAGCATTCCCG+AGG | + | chr5_3:9258010-9258029 | None:intergenic | 40.0% | |
| TTACTTAGATAGCTATCCGG+TGG | - | chr5_3:9258019-9258038 | Msa0797170:CDS | 40.0% | |
| !! | AGCTATCCGGTGGTTATTTT+TGG | - | chr5_3:9258029-9258048 | Msa0797170:CDS | 40.0% |
| TGCCTTTAGCAGCTATGTAT+GGG | - | chr5_3:9258124-9258143 | Msa0797170:CDS | 40.0% | |
| !!! | GCTGCTGTTTTTTTTCTAGG+TGG | - | chr5_3:9258193-9258212 | Msa0797170:CDS | 40.0% |
| TCTAGGTGGTTGTTCTTTCT+AGG | - | chr5_3:9258207-9258226 | Msa0797170:CDS | 40.0% | |
| !!! | GGGGTGTTGTATTGTGTTTT+CGG | - | chr5_3:9258297-9258316 | Msa0797170:CDS | 40.0% |
| ACAACTGTCAAGACGAAAGT+TGG | + | chr5_3:9258324-9258343 | None:intergenic | 40.0% | |
| AACTTTCGTCTTGACAGTTG+TGG | - | chr5_3:9258323-9258342 | Msa0797170:CDS | 40.0% | |
| TGACAGTTGTGGCACAAAAT+AGG | - | chr5_3:9258334-9258353 | Msa0797170:CDS | 40.0% | |
| GACAGTTGTGGCACAAAATA+GGG | - | chr5_3:9258335-9258354 | Msa0797170:CDS | 40.0% | |
| AAATCCCTTCACAACACCAT+TGG | + | chr5_3:9258380-9258399 | None:intergenic | 40.0% | |
| !! | ATAAGGAGCATTGTAGCATC+TGG | + | chr5_3:9258437-9258456 | None:intergenic | 40.0% |
| !! | TCTCGGTTCTGTTTTTCTGT+TGG | - | chr5_3:9258490-9258509 | Msa0797170:intron | 40.0% |
| TTAACACTCTTTGCCATCAC+AGG | - | chr5_3:9258785-9258804 | Msa0797170:intron | 40.0% | |
| ! | AATTATGGTCGTGGCTGTTT+TGG | + | chr5_3:9258854-9258873 | None:intergenic | 40.0% |
| ! | GAAGAGAAAAGCAGAGCTTT+TGG | - | chr5_3:9258959-9258978 | Msa0797170:CDS | 40.0% |
| TCTCAAAATCAAGAGGAAGG+AGG | - | chr5_3:9258993-9259012 | Msa0797170:CDS | 40.0% | |
| TGCCAGATGACTTGACTATT+TGG | - | chr5_3:9259042-9259061 | Msa0797170:intron | 40.0% | |
| GTAGCTCCCAAAGGTAAAAA+AGG | - | chr5_3:9259071-9259090 | Msa0797170:intron | 40.0% | |
| TGGTTAGATATGGAACCCTC+GGG | - | chr5_3:9257991-9258010 | Msa0797170:CDS | 45.0% | |
| !! | TTGTTAGAGTGCTGCTGTTG+TGG | - | chr5_3:9258057-9258076 | Msa0797170:CDS | 45.0% |
| GTGCCTTTAGCAGCTATGTA+TGG | - | chr5_3:9258123-9258142 | Msa0797170:CDS | 45.0% | |
| GCCTTTAGCAGCTATGTATG+GGG | - | chr5_3:9258125-9258144 | Msa0797170:CDS | 45.0% | |
| CCAAACACAGTTACCTGTGA+TGG | + | chr5_3:9258801-9258820 | None:intergenic | 45.0% | |
| CCATCACAGGTAACTGTGTT+TGG | - | chr5_3:9258798-9258817 | Msa0797170:intron | 45.0% | |
| CAAGCAAAGTTTGGAGGCAA+TGG | + | chr5_3:9259329-9259348 | None:intergenic | 45.0% | |
| GAGGCTTCAGCAACATCATT+TGG | + | chr5_3:9259374-9259393 | None:intergenic | 45.0% | |
| TGGTTAGATATGGAACCCTC+GGG | - | chr5_3:9257991-9258010 | Msa0797170:CDS | 45.0% | |
| !! | TTGTTAGAGTGCTGCTGTTG+TGG | - | chr5_3:9258057-9258076 | Msa0797170:CDS | 45.0% |
| GTGCCTTTAGCAGCTATGTA+TGG | - | chr5_3:9258123-9258142 | Msa0797170:CDS | 45.0% | |
| GCCTTTAGCAGCTATGTATG+GGG | - | chr5_3:9258125-9258144 | Msa0797170:CDS | 45.0% | |
| CCAAACACAGTTACCTGTGA+TGG | + | chr5_3:9258801-9258820 | None:intergenic | 45.0% | |
| CCATCACAGGTAACTGTGTT+TGG | - | chr5_3:9258798-9258817 | Msa0797170:intron | 45.0% | |
| CAAGCAAAGTTTGGAGGCAA+TGG | + | chr5_3:9259329-9259348 | None:intergenic | 45.0% | |
| GAGGCTTCAGCAACATCATT+TGG | + | chr5_3:9259374-9259393 | None:intergenic | 45.0% | |
| GCCCCATACATAGCTGCTAA+AGG | + | chr5_3:9258129-9258148 | None:intergenic | 50.0% | |
| !! | GCTTTGCTGCTGCTGTTTCT+AGG | - | chr5_3:9258152-9258171 | Msa0797170:CDS | 50.0% |
| ! | TGCCCTGTAAGCTTTTGCGA+TGG | - | chr5_3:9258276-9258295 | Msa0797170:CDS | 50.0% |
| ! | GCCCTGTAAGCTTTTGCGAT+GGG | - | chr5_3:9258277-9258296 | Msa0797170:CDS | 50.0% |
| CCCCATCGCAAAAGCTTACA+GGG | + | chr5_3:9258281-9258300 | None:intergenic | 50.0% | |
| ! | CCCTGTAAGCTTTTGCGATG+GGG | - | chr5_3:9258278-9258297 | Msa0797170:CDS | 50.0% |
| ACCCCATCGCAAAAGCTTAC+AGG | + | chr5_3:9258282-9258301 | None:intergenic | 50.0% | |
| !!! | TGGTCGTGGCTGTTTTGGTT+AGG | + | chr5_3:9258849-9258868 | None:intergenic | 50.0% |
| TGGAAGGAAGTAGCTCCCAA+AGG | - | chr5_3:9259062-9259081 | Msa0797170:intron | 50.0% | |
| GTCGCACAAGCAAAGTTTGG+AGG | + | chr5_3:9259335-9259354 | None:intergenic | 50.0% | |
| ! | GGTGTCGCACAAGCAAAGTT+TGG | + | chr5_3:9259338-9259357 | None:intergenic | 50.0% |
| GCCCCATACATAGCTGCTAA+AGG | + | chr5_3:9258129-9258148 | None:intergenic | 50.0% | |
| !! | GCTTTGCTGCTGCTGTTTCT+AGG | - | chr5_3:9258152-9258171 | Msa0797170:CDS | 50.0% |
| ! | TGCCCTGTAAGCTTTTGCGA+TGG | - | chr5_3:9258276-9258295 | Msa0797170:CDS | 50.0% |
| ! | GCCCTGTAAGCTTTTGCGAT+GGG | - | chr5_3:9258277-9258296 | Msa0797170:CDS | 50.0% |
| CCCCATCGCAAAAGCTTACA+GGG | + | chr5_3:9258281-9258300 | None:intergenic | 50.0% | |
| ! | CCCTGTAAGCTTTTGCGATG+GGG | - | chr5_3:9258278-9258297 | Msa0797170:CDS | 50.0% |
| ACCCCATCGCAAAAGCTTAC+AGG | + | chr5_3:9258282-9258301 | None:intergenic | 50.0% | |
| !!! | TGGTCGTGGCTGTTTTGGTT+AGG | + | chr5_3:9258849-9258868 | None:intergenic | 50.0% |
| TGGAAGGAAGTAGCTCCCAA+AGG | - | chr5_3:9259062-9259081 | Msa0797170:intron | 50.0% | |
| GTCGCACAAGCAAAGTTTGG+AGG | + | chr5_3:9259335-9259354 | None:intergenic | 50.0% | |
| ! | GGTGTCGCACAAGCAAAGTT+TGG | + | chr5_3:9259338-9259357 | None:intergenic | 50.0% |
| TTTGGACAGCTGTCTGCGCA+CGG | - | chr5_3:9258816-9258835 | Msa0797170:intron | 55.0% | |
| TTTGGACAGCTGTCTGCGCA+CGG | - | chr5_3:9258816-9258835 | Msa0797170:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9257990 | 9259430 | 9257990 | ID=Msa0797170;Name=Msa0797170 |
| chr5_3 | mRNA | 9257990 | 9259430 | 9257990 | ID=Msa0797170-mRNA-1;Parent=Msa0797170;Name=Msa0797170-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.33|1|1|3|0|226 |
| chr5_3 | exon | 9259380 | 9259430 | 9259380 | ID=Msa0797170-mRNA-1:exon:4031;Parent=Msa0797170-mRNA-1 |
| chr5_3 | exon | 9258880 | 9259026 | 9258880 | ID=Msa0797170-mRNA-1:exon:4030;Parent=Msa0797170-mRNA-1 |
| chr5_3 | exon | 9257990 | 9258472 | 9257990 | ID=Msa0797170-mRNA-1:exon:4029;Parent=Msa0797170-mRNA-1 |
| chr5_3 | CDS | 9259380 | 9259430 | 9259380 | ID=Msa0797170-mRNA-1:cds;Parent=Msa0797170-mRNA-1 |
| chr5_3 | CDS | 9258880 | 9259026 | 9258880 | ID=Msa0797170-mRNA-1:cds;Parent=Msa0797170-mRNA-1 |
| chr5_3 | CDS | 9257990 | 9258472 | 9257990 | ID=Msa0797170-mRNA-1:cds;Parent=Msa0797170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
