Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1332470 | Msa1389150 | 0.895818 | 6.677074e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGATTCACTAACCTTTC+TGG | 0.144636 | tig0021212:-97655 | None:intergenic |
| CTTCCGTTCAAAGGAGAATT+AGG | 0.270664 | tig0021212:-99864 | None:intergenic |
| GATGAAGTGACTAACTTCTT+TGG | 0.285324 | tig0021212:+99395 | Msa1389150:CDS |
| TTCCTAGTATAATATATAAA+TGG | 0.314017 | tig0021212:+97186 | Msa1389150:CDS |
| GGCGGTGGCGTTGGTGTTGA+TGG | 0.326270 | tig0021212:-97400 | None:intergenic |
| TTCTTGGGTGTTGCTGCCTC+AGG | 0.354609 | tig0021212:+98758 | Msa1389150:CDS |
| ATAAGAGATGTTGCTCAAAA+AGG | 0.363845 | tig0021212:+97209 | Msa1389150:CDS |
| CGGAGGCGCGGCGGTGGCGT+TGG | 0.394745 | tig0021212:-97409 | None:intergenic |
| AAAATACCCATGTCACATAA+GGG | 0.396365 | tig0021212:-97277 | None:intergenic |
| GAGAGACAGGGAGAGGGATA+AGG | 0.404052 | tig0021212:-97520 | None:intergenic |
| GAGATGAGGTTTCGAGAGAC+AGG | 0.418046 | tig0021212:-97533 | None:intergenic |
| GAGAGAGAGGGTGTGATGGC+GGG | 0.423053 | tig0021212:-97454 | None:intergenic |
| TGTTGAAGCGTTCAGTTAAC+CGG | 0.428959 | tig0021212:+98707 | Msa1389150:intron |
| TGATGGCGGAGGCGCGGCGG+TGG | 0.429757 | tig0021212:-97415 | None:intergenic |
| GAGAGGGATAAGGGAGATTG+AGG | 0.436301 | tig0021212:-97510 | None:intergenic |
| TAACCGGTAGGTCGCGTGAC+TGG | 0.438081 | tig0021212:+98723 | Msa1389150:CDS |
| CATGTCACATAAGGGGTGTA+TGG | 0.453184 | tig0021212:-97269 | None:intergenic |
| AGAGAGAGAGGGTGTGATGG+CGG | 0.453330 | tig0021212:-97455 | None:intergenic |
| ATCCATTTATATATTATACT+AGG | 0.453838 | tig0021212:-97188 | None:intergenic |
| AAGAAGTTAGTCACTTCATC+AGG | 0.458763 | tig0021212:-99392 | None:intergenic |
| AGAGGGATAAGGGAGATTGA+GGG | 0.465506 | tig0021212:-97509 | None:intergenic |
| AGAGACAGGGAGAGGGATAA+GGG | 0.467694 | tig0021212:-97519 | None:intergenic |
| GGGTGATGAAGGCGAGATTG+AGG | 0.470460 | tig0021212:-97489 | None:intergenic |
| TGAGGTTGACGAAGGTGAGA+GGG | 0.487941 | tig0021212:-97555 | None:intergenic |
| AGGGAGATTGAGGGTGATGA+AGG | 0.489055 | tig0021212:-97500 | None:intergenic |
| TGGTGTTGATGGCGGAGGCT+TGG | 0.492204 | tig0021212:-97389 | None:intergenic |
| TGCTCAGTAATATTAGATAT+AGG | 0.496069 | tig0021212:-99338 | None:intergenic |
| TTGAGGTTGACGAAGGTGAG+AGG | 0.500803 | tig0021212:-97556 | None:intergenic |
| GTAGGTCGCGTGACTGGAAG+TGG | 0.505525 | tig0021212:+98729 | Msa1389150:CDS |
| AGTGGCGGCGAGGGAGATTG+AGG | 0.507297 | tig0021212:-97573 | None:intergenic |
| AATTCTCCTTTGAACGGAAG+AGG | 0.508570 | tig0021212:+99867 | Msa1389150:CDS |
| TGTCTTGGACTCTTCTAGGA+TGG | 0.512896 | tig0021212:+99295 | Msa1389150:CDS |
| TGGGTGTGATGGCGGAGGCG+CGG | 0.521311 | tig0021212:-97421 | None:intergenic |
| GGCGTTGGTGTTGATGGCGG+AGG | 0.526265 | tig0021212:-97394 | None:intergenic |
| GCCACAGGTTTCCGCTGCAA+AGG | 0.529470 | tig0021212:+99268 | Msa1389150:CDS |
| CATGATCCTCTTCCGTTCAA+AGG | 0.530148 | tig0021212:-99873 | None:intergenic |
| CATACACCCCTTATGTGACA+TGG | 0.530228 | tig0021212:+97270 | Msa1389150:CDS |
| AACGGAAGAGGATCATGTGT+TGG | 0.533337 | tig0021212:+99879 | Msa1389150:CDS |
| AGAAACAAAAGTGGCGGCGA+GGG | 0.539643 | tig0021212:-97582 | None:intergenic |
| ACGAAGGTGAGAGGGAGATG+AGG | 0.539651 | tig0021212:-97547 | None:intergenic |
| CTTCAGAACATACTTGCCAC+AGG | 0.543157 | tig0021212:+99253 | Msa1389150:intron |
| CACTAGAAATCCATCCAGAA+AGG | 0.544220 | tig0021212:+97641 | Msa1389150:CDS |
| AGGTTTCGAGAGACAGGGAG+AGG | 0.547063 | tig0021212:-97527 | None:intergenic |
| GATTCACTAACCTTTCTGGA+TGG | 0.548144 | tig0021212:-97651 | None:intergenic |
| TGGAAGAGTGGTATGGAGAA+GGG | 0.549448 | tig0021212:-97249 | None:intergenic |
| TGTAGTGGGTGTGATGGCGG+AGG | 0.567911 | tig0021212:-97426 | None:intergenic |
| GGGTGTATGGAAGAGTGGTA+TGG | 0.569311 | tig0021212:-97256 | None:intergenic |
| ATGGAAGAGTGGTATGGAGA+AGG | 0.576479 | tig0021212:-97250 | None:intergenic |
| CTTCCAGTCACGCGACCTAC+CGG | 0.577781 | tig0021212:-98726 | None:intergenic |
| GTGTGATGGCGGAGGCGCGG+CGG | 0.578582 | tig0021212:-97418 | None:intergenic |
| GAGCCTAATTCTCCTTTGAA+CGG | 0.579217 | tig0021212:+99861 | Msa1389150:CDS |
| ATAAGGGGTGTATGGAAGAG+TGG | 0.606083 | tig0021212:-97261 | None:intergenic |
| GGTTTCGAGAGACAGGGAGA+GGG | 0.609172 | tig0021212:-97526 | None:intergenic |
| TCTAGTGAGAATCTAGAGTG+TGG | 0.627023 | tig0021212:-97625 | None:intergenic |
| GGTGGCGTTGGTGTTGATGG+CGG | 0.627465 | tig0021212:-97397 | None:intergenic |
| AAGATTCTGAGAAACAAAAG+TGG | 0.630865 | tig0021212:-97591 | None:intergenic |
| ACCTTTGCAGCGGAAACCTG+TGG | 0.636071 | tig0021212:-99269 | None:intergenic |
| AGATGAGGTTTCGAGAGACA+GGG | 0.637212 | tig0021212:-97532 | None:intergenic |
| AAATACCCATGTCACATAAG+GGG | 0.640085 | tig0021212:-97276 | None:intergenic |
| GAGAAACAAAAGTGGCGGCG+AGG | 0.641499 | tig0021212:-97583 | None:intergenic |
| GAAGCGTTCAGTTAACCGGT+AGG | 0.641958 | tig0021212:+98711 | Msa1389150:intron |
| ATACACCCCTTATGTGACAT+GGG | 0.645536 | tig0021212:+97271 | Msa1389150:CDS |
| TAGGTCGCGTGACTGGAAGT+GGG | 0.646015 | tig0021212:+98730 | Msa1389150:CDS |
| AGGGAGATTGAGGTTGACGA+AGG | 0.663780 | tig0021212:-97563 | None:intergenic |
| ATTCTGAGAAACAAAAGTGG+CGG | 0.678264 | tig0021212:-97588 | None:intergenic |
| GCCACATCACCTAAAACCTG+AGG | 0.693839 | tig0021212:-98774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGAATTATAAATATATT+AGG | + | tig0021212:98382-98401 | Msa1389150:intron | 10.0% |
| !! | ATTCTTCAAAAAAAAAAATA+AGG | - | tig0021212:98411-98430 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGAAGAATTATT+AGG | + | tig0021212:98415-98434 | Msa1389150:intron | 10.0% |
| !!! | TGTTATTTTACATTTAATTT+AGG | + | tig0021212:99553-99572 | Msa1389150:intron | 10.0% |
| !! | TTCCTAGTATAATATATAAA+TGG | + | tig0021212:97186-97205 | Msa1389150:CDS | 15.0% |
| !! | ATCCATTTATATATTATACT+AGG | - | tig0021212:97191-97210 | None:intergenic | 15.0% |
| !! | ACAAATCAATATATAAACAT+GGG | - | tig0021212:97683-97702 | None:intergenic | 15.0% |
| !! | TACAAATCAATATATAAACA+TGG | - | tig0021212:97684-97703 | None:intergenic | 15.0% |
| !! | CAGAAAATTAATCAAATTTA+AGG | - | tig0021212:97900-97919 | None:intergenic | 15.0% |
| !! | TAAAATTGTCATAAATGTAT+GGG | + | tig0021212:98313-98332 | Msa1389150:intron | 15.0% |
| !!! | TTTAGTTTTTATTGTAGTTT+AGG | + | tig0021212:98593-98612 | Msa1389150:intron | 15.0% |
| !!! | TAAGTTGCGATTTAAATTTT+AGG | + | tig0021212:97710-97729 | Msa1389150:intron | 20.0% |
| !!! | AAGTTGCGATTTAAATTTTA+GGG | + | tig0021212:97711-97730 | Msa1389150:intron | 20.0% |
| !! | ATCTAAACAAATCACAAAAT+CGG | - | tig0021212:97788-97807 | None:intergenic | 20.0% |
| !!! | ATTTGAGTTGTCTTAAAATT+GGG | + | tig0021212:97812-97831 | Msa1389150:intron | 20.0% |
| !! | TCAAATTTGTGATTCTAATT+TGG | + | tig0021212:97870-97889 | Msa1389150:intron | 20.0% |
| !! | CAAATTTGTGATTCTAATTT+GGG | + | tig0021212:97871-97890 | Msa1389150:intron | 20.0% |
| !! | AAATCCTAAATCGAAAAAAT+TGG | - | tig0021212:97923-97942 | None:intergenic | 20.0% |
| !!! | TTTTCGATTTAGGATTTATT+TGG | + | tig0021212:97926-97945 | Msa1389150:intron | 20.0% |
| !! | CTAAAATTGTCATAAATGTA+TGG | + | tig0021212:98312-98331 | Msa1389150:intron | 20.0% |
| !!! | TTCCTATTAAAATGTGTTTT+AGG | + | tig0021212:98539-98558 | Msa1389150:intron | 20.0% |
| !!! | TGAATTAATGTCTCTTTTTA+TGG | + | tig0021212:98562-98581 | Msa1389150:intron | 20.0% |
| !! | ACAATAAAAACTAAAATCAG+AGG | - | tig0021212:98588-98607 | None:intergenic | 20.0% |
| !!! | ACATTTTTGTTAGTCTAATT+AGG | + | tig0021212:98866-98885 | Msa1389150:intron | 20.0% |
| !! | ATTGTAGTATATGTTGAAAT+TGG | + | tig0021212:99115-99134 | Msa1389150:intron | 20.0% |
| !!! | TTACTTTTTCTGTAATTTTG+TGG | + | tig0021212:99770-99789 | Msa1389150:intron | 20.0% |
| !!! | AAATTTTAGGGTTTCTGATT+TGG | + | tig0021212:97723-97742 | Msa1389150:intron | 25.0% |
| !!! | AATTTTAGGGTTTCTGATTT+GGG | + | tig0021212:97724-97743 | Msa1389150:intron | 25.0% |
| !!! | GATTTGAGTTGTCTTAAAAT+TGG | + | tig0021212:97811-97830 | Msa1389150:intron | 25.0% |
| !!! | TTTGAGTTGTCTTAAAATTG+GGG | + | tig0021212:97813-97832 | Msa1389150:intron | 25.0% |
| ! | AGAATCACAAATTTGAAGAT+GGG | - | tig0021212:97866-97885 | None:intergenic | 25.0% |
| ! | TAGAATCACAAATTTGAAGA+TGG | - | tig0021212:97867-97886 | None:intergenic | 25.0% |
| ! | ACACAAATACCATAAAGATA+GGG | - | tig0021212:98008-98027 | None:intergenic | 25.0% |
| ! | TACACAAATACCATAAAGAT+AGG | - | tig0021212:98009-98028 | None:intergenic | 25.0% |
| ! | TGATAGCATTTATCTGTTAA+TGG | - | tig0021212:98117-98136 | None:intergenic | 25.0% |
| ! | TTAGAACAAAATACCAAAGT+TGG | - | tig0021212:98296-98315 | None:intergenic | 25.0% |
| !!! | ATGGTATTTTAGTCTCTATT+GGG | + | tig0021212:98458-98477 | Msa1389150:intron | 25.0% |
| !!! | CACCTAAAACACATTTTAAT+AGG | - | tig0021212:98544-98563 | None:intergenic | 25.0% |
| ! | CCAATAAAGCAATTGATATT+TGG | - | tig0021212:99145-99164 | None:intergenic | 25.0% |
| ! | CCAAATATCAATTGCTTTAT+TGG | + | tig0021212:99142-99161 | Msa1389150:intron | 25.0% |
| ! | TCACATGTGAAATTGATATT+TGG | - | tig0021212:99172-99191 | None:intergenic | 25.0% |
| ! | TAAAGCAATAAAGCATGTTA+CGG | - | tig0021212:99201-99220 | None:intergenic | 25.0% |
| ! | TGCTCAGTAATATTAGATAT+AGG | - | tig0021212:99341-99360 | None:intergenic | 25.0% |
| ! | GTAAAATAACAAACTTCATC+AGG | - | tig0021212:99544-99563 | None:intergenic | 25.0% |
| !! | ACTAGTTTCATCTATCATAT+TGG | - | tig0021212:99610-99629 | None:intergenic | 25.0% |
| ATAAGAGATGTTGCTCAAAA+AGG | + | tig0021212:97209-97228 | Msa1389150:CDS | 30.0% | |
| TGCTCAAAAAGGAAAAAGAT+TGG | + | tig0021212:97220-97239 | Msa1389150:CDS | 30.0% | |
| AAAATACCCATGTCACATAA+GGG | - | tig0021212:97280-97299 | None:intergenic | 30.0% | |
| AAAAATACCCATGTCACATA+AGG | - | tig0021212:97281-97300 | None:intergenic | 30.0% | |
| GAGAAGAAGAAAGTGAATAA+GGG | - | tig0021212:97346-97365 | None:intergenic | 30.0% | |
| AGAGAAGAAGAAAGTGAATA+AGG | - | tig0021212:97347-97366 | None:intergenic | 30.0% | |
| ! | AAGATTCTGAGAAACAAAAG+TGG | - | tig0021212:97594-97613 | None:intergenic | 30.0% |
| !!! | ATTTTAGGGTTTCTGATTTG+GGG | + | tig0021212:97725-97744 | Msa1389150:intron | 30.0% |
| ! | TGTCTTAAAATTGGGGATTT+TGG | + | tig0021212:97820-97839 | Msa1389150:intron | 30.0% |
| TTGAAGATGGGTACATAAAT+TGG | - | tig0021212:97854-97873 | None:intergenic | 30.0% | |
| !!! | TCTGCCAATTTTTTCGATTT+AGG | + | tig0021212:97916-97935 | Msa1389150:intron | 30.0% |
| AATAATCCTCCCTATCTTTA+TGG | + | tig0021212:97996-98015 | Msa1389150:intron | 30.0% | |
| ! | TTAACTCTGTCTGTAGATTT+TGG | + | tig0021212:98055-98074 | Msa1389150:intron | 30.0% |
| ! | TCAATGAACTGACTTATTCT+CGG | + | tig0021212:98156-98175 | Msa1389150:intron | 30.0% |
| GTGAGAAGAAGTAATATCTT+TGG | + | tig0021212:98250-98269 | Msa1389150:intron | 30.0% | |
| AGTACATAAATCTCCAACTT+TGG | + | tig0021212:98280-98299 | Msa1389150:intron | 30.0% | |
| !!! | CATGGTATTTTAGTCTCTAT+TGG | + | tig0021212:98457-98476 | Msa1389150:intron | 30.0% |
| ATCACTGACAAAAATATTGC+AGG | - | tig0021212:98648-98667 | None:intergenic | 30.0% | |
| AGACTAACAAAAATGTTGCA+GGG | - | tig0021212:98862-98881 | None:intergenic | 30.0% | |
| TAGACTAACAAAAATGTTGC+AGG | - | tig0021212:98863-98882 | None:intergenic | 30.0% | |
| ! | TTTGTTAGTCTAATTAGGAC+CGG | + | tig0021212:98871-98890 | Msa1389150:intron | 30.0% |
| TGTTTCATTCAGTTTAGAGA+GGG | + | tig0021212:98901-98920 | Msa1389150:intron | 30.0% | |
| ! | AAGACTATTTAAGAGGTATG+TGG | + | tig0021212:99082-99101 | Msa1389150:intron | 30.0% |
| AAAGCAATAAAGCATGTTAC+GGG | - | tig0021212:99200-99219 | None:intergenic | 30.0% | |
| CAAAGAAAGGAACAAAGATA+GGG | - | tig0021212:99447-99466 | None:intergenic | 30.0% | |
| TCAAAGAAAGGAACAAAGAT+AGG | - | tig0021212:99448-99467 | None:intergenic | 30.0% | |
| TGCATTATTTCGTCAAAGAA+AGG | - | tig0021212:99460-99479 | None:intergenic | 30.0% | |
| TTTCATCTATCATATTGGAC+AGG | - | tig0021212:99605-99624 | None:intergenic | 30.0% | |
| ACTAACATAAGGGTCATTAT+TGG | - | tig0021212:99695-99714 | None:intergenic | 30.0% | |
| TAATGACCCTTATGTTAGTT+TGG | + | tig0021212:99696-99715 | Msa1389150:intron | 30.0% | |
| ! | AAAGCACCAAACTAACATAA+GGG | - | tig0021212:99705-99724 | None:intergenic | 30.0% |
| !! | AAAAGCACCAAACTAACATA+AGG | - | tig0021212:99706-99725 | None:intergenic | 30.0% |
| AAATACCCATGTCACATAAG+GGG | - | tig0021212:97279-97298 | None:intergenic | 35.0% | |
| GAAGAAAGTGAATAAGGGAA+TGG | - | tig0021212:97341-97360 | None:intergenic | 35.0% | |
| ! | ATTCTGAGAAACAAAAGTGG+CGG | - | tig0021212:97591-97610 | None:intergenic | 35.0% |
| TTGTGATTCACTAACCTTTC+TGG | - | tig0021212:97658-97677 | None:intergenic | 35.0% | |
| CAAATACCATAAAGATAGGG+AGG | - | tig0021212:98005-98024 | None:intergenic | 35.0% | |
| !!! | CTGTCTGTAGATTTTGGTTT+TGG | + | tig0021212:98061-98080 | Msa1389150:intron | 35.0% |
| CATTTCAACCCTCACATATA+GGG | - | tig0021212:98231-98250 | None:intergenic | 35.0% | |
| ACATTTCAACCCTCACATAT+AGG | - | tig0021212:98232-98251 | None:intergenic | 35.0% | |
| GATGTTATATGTAGCTCACT+TGG | + | tig0021212:98335-98354 | Msa1389150:intron | 35.0% | |
| TACCATGCAGCTGATTAATA+AGG | - | tig0021212:98444-98463 | None:intergenic | 35.0% | |
| CTGTTTCATTCAGTTTAGAG+AGG | + | tig0021212:98900-98919 | Msa1389150:intron | 35.0% | |
| GTTTCATTCAGTTTAGAGAG+GGG | + | tig0021212:98902-98921 | Msa1389150:intron | 35.0% | |
| ATGCAATGTACATCAACAAC+CGG | + | tig0021212:98996-99015 | Msa1389150:intron | 35.0% | |
| ATCGTCGAAGACTATTTAAG+AGG | + | tig0021212:99075-99094 | Msa1389150:intron | 35.0% | |
| AAGCAATAAAGCATGTTACG+GGG | - | tig0021212:99199-99218 | None:intergenic | 35.0% | |
| ! | TTTTTGTCTTGGACTCTTCT+AGG | + | tig0021212:99291-99310 | Msa1389150:CDS | 35.0% |
| AAGAAGTTAGTCACTTCATC+AGG | - | tig0021212:99395-99414 | None:intergenic | 35.0% | |
| GATGAAGTGACTAACTTCTT+TGG | + | tig0021212:99395-99414 | Msa1389150:CDS | 35.0% | |
| CTTTGACGAAATAATGCATC+AGG | + | tig0021212:99462-99481 | Msa1389150:intron | 35.0% | |
| CACAACAAGTAAAACATGAC+TGG | - | tig0021212:99651-99670 | None:intergenic | 35.0% | |
| TGAACTTCTGATGCAATTGT+AGG | + | tig0021212:99669-99688 | Msa1389150:intron | 35.0% | |
| !!! | GTTTGGTGCTTTTCTTAGTT+CGG | + | tig0021212:99713-99732 | Msa1389150:intron | 35.0% |
| ATACACCCCTTATGTGACAT+GGG | + | tig0021212:97271-97290 | Msa1389150:CDS | 40.0% | |
| !!! | GTTTTTTGTAGTGGGTGTGA+TGG | - | tig0021212:97435-97454 | None:intergenic | 40.0% |
| ! | TTTTCAGAGAGAGAGAGAGA+GGG | - | tig0021212:97469-97488 | None:intergenic | 40.0% |
| ! | TCTAGTGAGAATCTAGAGTG+TGG | - | tig0021212:97628-97647 | None:intergenic | 40.0% |
| CACTAGAAATCCATCCAGAA+AGG | + | tig0021212:97641-97660 | Msa1389150:CDS | 40.0% | |
| GATTCACTAACCTTTCTGGA+TGG | - | tig0021212:97654-97673 | None:intergenic | 40.0% | |
| ATTCTCGGCTACTTAAACTC+AGG | + | tig0021212:98171-98190 | Msa1389150:intron | 40.0% | |
| GTTATATGTAGCTCACTTGG+TGG | + | tig0021212:98338-98357 | Msa1389150:intron | 40.0% | |
| ! | TCACTTGGTGGTACTATTAG+TGG | + | tig0021212:98350-98369 | Msa1389150:intron | 40.0% |
| ! | TGCCTTATTAATCAGCTGCA+TGG | + | tig0021212:98439-98458 | Msa1389150:intron | 40.0% |
| ATCTCAACCTATCGGGAATT+AGG | - | tig0021212:98486-98505 | None:intergenic | 40.0% | |
| ! | TAATTCCCGATAGGTTGAGA+TGG | + | tig0021212:98485-98504 | Msa1389150:intron | 40.0% |
| AACTTCCATCTCAACCTATC+GGG | - | tig0021212:98493-98512 | None:intergenic | 40.0% | |
| CAACTTCCATCTCAACCTAT+CGG | - | tig0021212:98494-98513 | None:intergenic | 40.0% | |
| TGAGATGGAAGTTGCAGATA+TGG | + | tig0021212:98500-98519 | Msa1389150:intron | 40.0% | |
| GAGATGGAAGTTGCAGATAT+GGG | + | tig0021212:98501-98520 | Msa1389150:intron | 40.0% | |
| ! | GTGATTGCTAGCGCATTTTA+TGG | + | tig0021212:98663-98682 | Msa1389150:intron | 40.0% |
| TTAACTGAACGCTTCAACAG+AGG | - | tig0021212:98706-98725 | None:intergenic | 40.0% | |
| ! | TGTTGAAGCGTTCAGTTAAC+CGG | + | tig0021212:98707-98726 | Msa1389150:intron | 40.0% |
| ! | TGGAAGTGGGAGTTTTTCTT+GGG | + | tig0021212:98743-98762 | Msa1389150:CDS | 40.0% |
| !! | CACTTGTTTTCTGCTATGCT+TGG | + | tig0021212:98832-98851 | Msa1389150:intron | 40.0% |
| TAACAAAAATGTTGCAGGGC+AGG | - | tig0021212:98858-98877 | None:intergenic | 40.0% | |
| CTGAATGAAACAGCTTCAAC+CGG | - | tig0021212:98893-98912 | None:intergenic | 40.0% | |
| CCTTGTGTGTTACCTTTGTT+GGG | + | tig0021212:98949-98968 | Msa1389150:intron | 40.0% | |
| AATATAACTCCTCCGTTCTC+TGG | - | tig0021212:99039-99058 | None:intergenic | 40.0% | |
| CAAGACAAAAACCTTTGCAG+CGG | - | tig0021212:99282-99301 | None:intergenic | 40.0% | |
| TAATGCATCAGGTCACTTGT+TGG | + | tig0021212:99473-99492 | Msa1389150:intron | 40.0% | |
| GAGCCTAATTCTCCTTTGAA+CGG | + | tig0021212:99861-99880 | Msa1389150:CDS | 40.0% | |
| CTTCCGTTCAAAGGAGAATT+AGG | - | tig0021212:99867-99886 | None:intergenic | 40.0% | |
| AATTCTCCTTTGAACGGAAG+AGG | + | tig0021212:99867-99886 | Msa1389150:CDS | 40.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | tig0021212:97252-97271 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | tig0021212:97253-97272 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | tig0021212:97264-97283 | None:intergenic | 45.0% |
| ! | CATGTCACATAAGGGGTGTA+TGG | - | tig0021212:97272-97291 | None:intergenic | 45.0% |
| CATACACCCCTTATGTGACA+TGG | + | tig0021212:97270-97289 | Msa1389150:CDS | 45.0% | |
| !!! | TTTTGTAGTGGGTGTGATGG+CGG | - | tig0021212:97432-97451 | None:intergenic | 45.0% |
| !!! | GATGGCGGGTTTTTTGTAGT+GGG | - | tig0021212:97443-97462 | None:intergenic | 45.0% |
| !!! | TGATGGCGGGTTTTTTGTAG+TGG | - | tig0021212:97444-97463 | None:intergenic | 45.0% |
| ! | GTTTTCAGAGAGAGAGAGAG+AGG | - | tig0021212:97470-97489 | None:intergenic | 45.0% |
| AGAGGGATAAGGGAGATTGA+GGG | - | tig0021212:97512-97531 | None:intergenic | 45.0% | |
| AGATGAGGTTTCGAGAGACA+GGG | - | tig0021212:97535-97554 | None:intergenic | 45.0% | |
| CGGTCGCAAATCAAATTCGA+AGG | - | tig0021212:97768-97787 | None:intergenic | 45.0% | |
| ATTGAGGGACCCTATATGTG+AGG | + | tig0021212:98219-98238 | Msa1389150:intron | 45.0% | |
| TTGAGGGACCCTATATGTGA+GGG | + | tig0021212:98220-98239 | Msa1389150:intron | 45.0% | |
| ! | CTGGAAGTGGGAGTTTTTCT+TGG | + | tig0021212:98742-98761 | Msa1389150:CDS | 45.0% |
| ! | GATGTGGCTGCAGTTTTTCT+TGG | + | tig0021212:98789-98808 | Msa1389150:intron | 45.0% |
| TCATTCAGTTTAGAGAGGGG+AGG | + | tig0021212:98905-98924 | Msa1389150:intron | 45.0% | |
| GCCTTGTGTGTTACCTTTGT+TGG | + | tig0021212:98948-98967 | Msa1389150:intron | 45.0% | |
| CCCAACAAAGGTAACACACA+AGG | - | tig0021212:98952-98971 | None:intergenic | 45.0% | |
| ! | TGAGTGCAGACTGTGTTGTT+TGG | + | tig0021212:98972-98991 | Msa1389150:intron | 45.0% |
| CAACTGGAAACACCAGAGAA+CGG | + | tig0021212:99024-99043 | Msa1389150:intron | 45.0% | |
| CTTCAGAACATACTTGCCAC+AGG | + | tig0021212:99253-99272 | Msa1389150:intron | 45.0% | |
| ! | CGCTGCAAAGGTTTTTGTCT+TGG | + | tig0021212:99280-99299 | Msa1389150:CDS | 45.0% |
| ! | TGTCTTGGACTCTTCTAGGA+TGG | + | tig0021212:99295-99314 | Msa1389150:CDS | 45.0% |
| AGAGCACGATCAATCTTGTG+TGG | + | tig0021212:99739-99758 | Msa1389150:intron | 45.0% | |
| CATGATCCTCTTCCGTTCAA+AGG | - | tig0021212:99876-99895 | None:intergenic | 45.0% | |
| AACGGAAGAGGATCATGTGT+TGG | + | tig0021212:99879-99898 | Msa1389150:CDS | 45.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | tig0021212:97259-97278 | None:intergenic | 50.0% | |
| TCTCTCTTCTGTCATCCCAG+AGG | + | tig0021212:97362-97381 | Msa1389150:intron | 50.0% | |
| AGGGAGATTGAGGGTGATGA+AGG | - | tig0021212:97503-97522 | None:intergenic | 50.0% | |
| GAGAGGGATAAGGGAGATTG+AGG | - | tig0021212:97513-97532 | None:intergenic | 50.0% | |
| AGAGACAGGGAGAGGGATAA+GGG | - | tig0021212:97522-97541 | None:intergenic | 50.0% | |
| GAGATGAGGTTTCGAGAGAC+AGG | - | tig0021212:97536-97555 | None:intergenic | 50.0% | |
| TGAGGTTGACGAAGGTGAGA+GGG | - | tig0021212:97558-97577 | None:intergenic | 50.0% | |
| TTGAGGTTGACGAAGGTGAG+AGG | - | tig0021212:97559-97578 | None:intergenic | 50.0% | |
| AGGGAGATTGAGGTTGACGA+AGG | - | tig0021212:97566-97585 | None:intergenic | 50.0% | |
| AGAAACAAAAGTGGCGGCGA+GGG | - | tig0021212:97585-97604 | None:intergenic | 50.0% | |
| GGCTACTTAAACTCAGGCTG+TGG | + | tig0021212:98177-98196 | Msa1389150:intron | 50.0% | |
| AGATTGCCGATGCAGGATTG+AGG | + | tig0021212:98203-98222 | Msa1389150:intron | 50.0% | |
| GATTGCCGATGCAGGATTGA+GGG | + | tig0021212:98204-98223 | Msa1389150:intron | 50.0% | |
| CAGGAAAGTCACGAGTCGAT+AGG | - | tig0021212:98629-98648 | None:intergenic | 50.0% | |
| ! | GAAGCGTTCAGTTAACCGGT+AGG | + | tig0021212:98711-98730 | Msa1389150:intron | 50.0% |
| !! | GTGTTGCTGCCTCAGGTTTT+AGG | + | tig0021212:98765-98784 | Msa1389150:CDS | 50.0% |
| !!! | GCCTCAGGTTTTAGGTGATG+TGG | + | tig0021212:98773-98792 | Msa1389150:intron | 50.0% |
| GCCACATCACCTAAAACCTG+AGG | - | tig0021212:98777-98796 | None:intergenic | 50.0% | |
| ! | GTGGCTGCAGTTTTTCTTGG+TGG | + | tig0021212:98792-98811 | Msa1389150:intron | 50.0% |
| ! | GAGGATGTGTTGCTGTCACA+TGG | + | tig0021212:98924-98943 | Msa1389150:intron | 50.0% |
| AGTCTGCACTCACCCAACAA+AGG | - | tig0021212:98964-98983 | None:intergenic | 50.0% | |
| TCAACAACCGGCTAAGCAAC+TGG | + | tig0021212:99008-99027 | Msa1389150:intron | 50.0% | |
| GGTGTTTCCAGTTGCTTAGC+CGG | - | tig0021212:99018-99037 | None:intergenic | 50.0% | |
| ! | AGAGAGAGAGGGTGTGATGG+CGG | - | tig0021212:97458-97477 | None:intergenic | 55.0% |
| ! | GAGAGAGAGAGAGGGTGTGA+TGG | - | tig0021212:97461-97480 | None:intergenic | 55.0% |
| GGGTGATGAAGGCGAGATTG+AGG | - | tig0021212:97492-97511 | None:intergenic | 55.0% | |
| GAGAGACAGGGAGAGGGATA+AGG | - | tig0021212:97523-97542 | None:intergenic | 55.0% | |
| GGTTTCGAGAGACAGGGAGA+GGG | - | tig0021212:97529-97548 | None:intergenic | 55.0% | |
| AGGTTTCGAGAGACAGGGAG+AGG | - | tig0021212:97530-97549 | None:intergenic | 55.0% | |
| ACGAAGGTGAGAGGGAGATG+AGG | - | tig0021212:97550-97569 | None:intergenic | 55.0% | |
| GAGAAACAAAAGTGGCGGCG+AGG | - | tig0021212:97586-97605 | None:intergenic | 55.0% | |
| GTGGAAGAGATTGCCGATGC+AGG | + | tig0021212:98196-98215 | Msa1389150:intron | 55.0% | |
| AGGGTCCCTCAATCCTGCAT+CGG | - | tig0021212:98212-98231 | None:intergenic | 55.0% | |
| TTGGGCGCCTAATTCCCGAT+AGG | + | tig0021212:98476-98495 | Msa1389150:intron | 55.0% | |
| TAGGTCGCGTGACTGGAAGT+GGG | + | tig0021212:98730-98749 | Msa1389150:CDS | 55.0% | |
| !! | TTCTTGGGTGTTGCTGCCTC+AGG | + | tig0021212:98758-98777 | Msa1389150:CDS | 55.0% |
| CTGGAAACACCAGAGAACGG+AGG | + | tig0021212:99027-99046 | Msa1389150:intron | 55.0% | |
| ACCTTTGCAGCGGAAACCTG+TGG | - | tig0021212:99272-99291 | None:intergenic | 55.0% | |
| !! | TGGTGTTGATGGCGGAGGCT+TGG | - | tig0021212:97392-97411 | None:intergenic | 60.0% |
| !! | GGTGGCGTTGGTGTTGATGG+CGG | - | tig0021212:97400-97419 | None:intergenic | 60.0% |
| !! | TGTAGTGGGTGTGATGGCGG+AGG | - | tig0021212:97429-97448 | None:intergenic | 60.0% |
| ! | GAGAGAGAGGGTGTGATGGC+GGG | - | tig0021212:97457-97476 | None:intergenic | 60.0% |
| TAACCGGTAGGTCGCGTGAC+TGG | + | tig0021212:98723-98742 | Msa1389150:CDS | 60.0% | |
| CTTCCAGTCACGCGACCTAC+CGG | - | tig0021212:98729-98748 | None:intergenic | 60.0% | |
| GTAGGTCGCGTGACTGGAAG+TGG | + | tig0021212:98729-98748 | Msa1389150:CDS | 60.0% | |
| GCCACAGGTTTCCGCTGCAA+AGG | + | tig0021212:99268-99287 | Msa1389150:CDS | 60.0% | |
| ! | CGGAGGCTTGGTCTGCCTCT+GGG | - | tig0021212:97380-97399 | None:intergenic | 65.0% |
| !! | GGCGTTGGTGTTGATGGCGG+AGG | - | tig0021212:97397-97416 | None:intergenic | 65.0% |
| !! | GGCGGTGGCGTTGGTGTTGA+TGG | - | tig0021212:97403-97422 | None:intergenic | 65.0% |
| AGTGGCGGCGAGGGAGATTG+AGG | - | tig0021212:97576-97595 | None:intergenic | 65.0% | |
| ! | GCGGAGGCTTGGTCTGCCTC+TGG | - | tig0021212:97381-97400 | None:intergenic | 70.0% |
| !! | TGGGTGTGATGGCGGAGGCG+CGG | - | tig0021212:97424-97443 | None:intergenic | 70.0% |
| !! | GTGTGATGGCGGAGGCGCGG+CGG | - | tig0021212:97421-97440 | None:intergenic | 75.0% |
| !!! | TGATGGCGGAGGCGCGGCGG+TGG | - | tig0021212:97418-97437 | None:intergenic | 80.0% |
| !! | CGGAGGCGCGGCGGTGGCGT+TGG | - | tig0021212:97412-97431 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021212 | gene | 97176 | 99914 | 97176 | ID=Msa1389150;Name=Msa1389150 |
| tig0021212 | mRNA | 97176 | 99914 | 97176 | ID=Msa1389150-mRNA-1;Parent=Msa1389150;Name=Msa1389150-mRNA-1;_AED=0.42;_eAED=0.49;_QI=0|0|0|0.8|1|1|5|0|236 |
| tig0021212 | exon | 97176 | 97292 | 97176 | ID=Msa1389150-mRNA-1:exon:11458;Parent=Msa1389150-mRNA-1 |
| tig0021212 | exon | 97382 | 97662 | 97382 | ID=Msa1389150-mRNA-1:exon:11459;Parent=Msa1389150-mRNA-1 |
| tig0021212 | exon | 98715 | 98786 | 98715 | ID=Msa1389150-mRNA-1:exon:11460;Parent=Msa1389150-mRNA-1 |
| tig0021212 | exon | 99259 | 99427 | 99259 | ID=Msa1389150-mRNA-1:exon:11461;Parent=Msa1389150-mRNA-1 |
| tig0021212 | exon | 99843 | 99914 | 99843 | ID=Msa1389150-mRNA-1:exon:11462;Parent=Msa1389150-mRNA-1 |
| tig0021212 | CDS | 97176 | 97292 | 97176 | ID=Msa1389150-mRNA-1:cds;Parent=Msa1389150-mRNA-1 |
| tig0021212 | CDS | 97382 | 97662 | 97382 | ID=Msa1389150-mRNA-1:cds;Parent=Msa1389150-mRNA-1 |
| tig0021212 | CDS | 98715 | 98786 | 98715 | ID=Msa1389150-mRNA-1:cds;Parent=Msa1389150-mRNA-1 |
| tig0021212 | CDS | 99259 | 99427 | 99259 | ID=Msa1389150-mRNA-1:cds;Parent=Msa1389150-mRNA-1 |
| tig0021212 | CDS | 99843 | 99914 | 99843 | ID=Msa1389150-mRNA-1:cds;Parent=Msa1389150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
