Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389250 | AES59897.2 | 74.790 | 238 | 53 | 5 | 15 | 248 | 15 | 249 | 3.00e-109 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389250 | G7I977 | 74.790 | 238 | 53 | 5 | 15 | 248 | 15 | 249 | 1.43e-109 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1389180 | Msa1389250 | 0.934037 | 7.494095e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389250 | MtrunA17_Chr1g0160711 | 74.569 | 232 | 53 | 4 | 21 | 248 | 17 | 246 | 1.25e-111 | 334 |
| Msa1389250 | MtrunA17_Chr1g0160761 | 68.482 | 257 | 68 | 4 | 1 | 248 | 1 | 253 | 5.38e-108 | 325 |
| Msa1389250 | MtrunA17_Chr1g0160721 | 60.079 | 253 | 88 | 5 | 1 | 251 | 12 | 253 | 8.28e-87 | 271 |
| Msa1389250 | MtrunA17_Chr1g0160661 | 57.087 | 254 | 96 | 5 | 1 | 252 | 27 | 269 | 7.32e-84 | 258 |
| Msa1389250 | MtrunA17_Chr1g0160561 | 51.331 | 263 | 106 | 8 | 2 | 250 | 7 | 261 | 6.94e-75 | 239 |
| Msa1389250 | MtrunA17_Chr1g0160701 | 59.227 | 233 | 74 | 10 | 17 | 238 | 32 | 254 | 6.97e-71 | 229 |
| Msa1389250 | MtrunA17_Chr1g0158061 | 35.377 | 212 | 116 | 8 | 33 | 232 | 35 | 237 | 6.82e-29 | 110 |
| Msa1389250 | MtrunA17_Chr1g0157791 | 33.840 | 263 | 141 | 11 | 7 | 247 | 6 | 257 | 5.78e-28 | 112 |
| Msa1389250 | MtrunA17_Chr1g0158151 | 33.579 | 271 | 146 | 13 | 1 | 247 | 1 | 261 | 4.14e-27 | 109 |
| Msa1389250 | MtrunA17_Chr1g0158191 | 34.118 | 255 | 121 | 13 | 10 | 234 | 4 | 241 | 8.77e-27 | 108 |
| Msa1389250 | MtrunA17_Chr1g0157991 | 34.802 | 227 | 123 | 8 | 24 | 233 | 28 | 246 | 8.36e-26 | 105 |
| Msa1389250 | MtrunA17_Chr1g0157961 | 34.529 | 223 | 125 | 8 | 24 | 233 | 33 | 247 | 1.37e-25 | 102 |
| Msa1389250 | MtrunA17_Chr3g0088331 | 32.751 | 229 | 119 | 10 | 21 | 234 | 34 | 242 | 1.13e-23 | 96.7 |
| Msa1389250 | MtrunA17_Chr1g0158411 | 32.110 | 218 | 118 | 7 | 30 | 234 | 51 | 251 | 7.85e-23 | 97.4 |
| Msa1389250 | MtrunA17_Chr1g0158761 | 33.333 | 246 | 124 | 12 | 1 | 234 | 1 | 218 | 1.36e-22 | 96.7 |
| Msa1389250 | MtrunA17_Chr1g0157881 | 30.153 | 262 | 111 | 11 | 33 | 234 | 60 | 309 | 1.58e-22 | 96.3 |
| Msa1389250 | MtrunA17_Chr1g0158461 | 29.963 | 267 | 145 | 11 | 1 | 234 | 17 | 274 | 2.27e-22 | 93.6 |
| Msa1389250 | MtrunA17_Chr6g0467711 | 35.160 | 219 | 106 | 9 | 33 | 234 | 48 | 247 | 2.39e-22 | 95.9 |
| Msa1389250 | MtrunA17_Chr1g0158041 | 33.486 | 218 | 119 | 7 | 33 | 233 | 36 | 244 | 5.12e-22 | 94.7 |
| Msa1389250 | MtrunA17_Chr1g0158661 | 29.630 | 243 | 137 | 8 | 27 | 250 | 33 | 260 | 2.14e-21 | 93.2 |
| Msa1389250 | MtrunA17_Chr1g0158541 | 32.114 | 246 | 140 | 10 | 5 | 234 | 16 | 250 | 1.50e-20 | 90.5 |
| Msa1389250 | MtrunA17_Chr1g0158331 | 30.189 | 265 | 140 | 13 | 1 | 234 | 17 | 267 | 1.84e-19 | 85.9 |
| Msa1389250 | MtrunA17_Chr1g0158731 | 28.455 | 246 | 149 | 9 | 4 | 234 | 8 | 241 | 3.20e-19 | 85.1 |
| Msa1389250 | MtrunA17_Chr1g0158631 | 29.688 | 256 | 129 | 10 | 27 | 251 | 33 | 268 | 3.88e-19 | 86.3 |
| Msa1389250 | MtrunA17_Chr1g0157911 | 30.631 | 222 | 121 | 9 | 33 | 234 | 42 | 250 | 1.48e-18 | 84.7 |
| Msa1389250 | MtrunA17_Chr1g0157861 | 28.906 | 256 | 112 | 11 | 33 | 234 | 45 | 284 | 1.94e-18 | 84.3 |
| Msa1389250 | MtrunA17_Chr1g0158121 | 45.263 | 95 | 45 | 3 | 24 | 116 | 29 | 118 | 4.18e-14 | 67.4 |
| Msa1389250 | MtrunA17_Chr1g0158301 | 28.862 | 246 | 144 | 11 | 5 | 234 | 18 | 248 | 5.63e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | tig0021250:-72313 | Msa1389250:CDS |
| TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | tig0021250:-72312 | Msa1389250:CDS |
| TTTATGGATTTGAACTTTCT+TGG | 0.219600 | tig0021250:-71967 | Msa1389250:CDS |
| CATTATTGTCCTCACATAAT+AGG | 0.236387 | tig0021250:+72455 | None:intergenic |
| CAACTTCACCATACGACTAT+TGG | 0.252740 | tig0021250:-72365 | Msa1389250:CDS |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | tig0021250:+72484 | None:intergenic |
| TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | tig0021250:+72307 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | tig0021250:-72082 | Msa1389250:CDS |
| CTCAGTAGTCTTTGTAATGA+AGG | 0.371446 | tig0021250:-71944 | Msa1389250:CDS |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | tig0021250:-72075 | Msa1389250:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | tig0021250:-72065 | Msa1389250:CDS |
| CAGCATTTATGTATAGATCC+AGG | 0.447944 | tig0021250:-71893 | Msa1389250:intron |
| TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | tig0021250:+72251 | None:intergenic |
| TAACAGCACGACAAGGGTTA+AGG | 0.463192 | tig0021250:+72618 | None:intergenic |
| ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | tig0021250:-72028 | Msa1389250:CDS |
| GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | tig0021250:-72115 | Msa1389250:CDS |
| TACGAGAATTCTTTCTATGT+TGG | 0.482804 | tig0021250:-72118 | Msa1389250:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | tig0021250:-72076 | Msa1389250:CDS |
| GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | tig0021250:+72255 | None:intergenic |
| CTGGATCTATACATAAATGC+TGG | 0.534443 | tig0021250:+71894 | None:intergenic |
| CCGTCGGAATATATTGATGA+AGG | 0.536336 | tig0021250:-72175 | Msa1389250:CDS |
| TTCTACAGACATGCGTCGAA+TGG | 0.543277 | tig0021250:-71993 | Msa1389250:CDS |
| TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | tig0021250:+72315 | None:intergenic |
| ATTGAAATCCAATAGTCGTA+TGG | 0.568248 | tig0021250:+72357 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | tig0021250:-72042 | Msa1389250:CDS |
| GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | tig0021250:+72311 | None:intergenic |
| TTCTCGTACAACAAAGTGCA+TGG | 0.590113 | tig0021250:-72583 | Msa1389250:CDS |
| ATTAAAAGCTAGGTAGGGTG+AGG | 0.593472 | tig0021250:+72261 | None:intergenic |
| ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | tig0021250:+72019 | None:intergenic |
| AACAAGAGTCATGTTCAAGA+AGG | 0.614007 | tig0021250:-72552 | Msa1389250:CDS |
| CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | tig0021250:-72483 | Msa1389250:CDS |
| AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | tig0021250:+72310 | None:intergenic |
| TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | tig0021250:+72256 | None:intergenic |
| CCTTCATCAATATATTCCGA+CGG | 0.626569 | tig0021250:+72175 | None:intergenic |
| GTATTAGTAACAGCACGACA+AGG | 0.628217 | tig0021250:+72611 | None:intergenic |
| TATTAGTAACAGCACGACAA+GGG | 0.651789 | tig0021250:+72612 | None:intergenic |
| GAGTCATGTTCAAGAAGGTG+CGG | 0.657869 | tig0021250:-72547 | Msa1389250:CDS |
| TATGAATTTGAAGAACACCA+TGG | 0.674399 | tig0021250:-72418 | Msa1389250:CDS |
| GAGGTACAACCTATTATGTG+AGG | 0.678478 | tig0021250:-72464 | Msa1389250:CDS |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | tig0021250:-72493 | Msa1389250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTTATATTA+TGG | - | tig0021250:72439-72458 | Msa1389250:CDS | 0.0% |
| !!! | TTTTTTTTTATTTATATTAT+GGG | - | tig0021250:72440-72459 | Msa1389250:CDS | 0.0% |
| !!! | TTTTTTTTTTATTTATATTA+TGG | - | tig0021250:72439-72458 | Msa1389250:CDS | 0.0% |
| !!! | TTTTTTTTTATTTATATTAT+GGG | - | tig0021250:72440-72459 | Msa1389250:CDS | 0.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | + | tig0021250:71875-71894 | None:intergenic | 20.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | + | tig0021250:71875-71894 | None:intergenic | 20.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | - | tig0021250:72185-72204 | Msa1389250:CDS | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | tig0021250:72306-72325 | Msa1389250:CDS | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | - | tig0021250:72185-72204 | Msa1389250:CDS | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | tig0021250:72306-72325 | Msa1389250:CDS | 25.0% |
| CATTATTGTCCTCACATAAT+AGG | + | tig0021250:71821-71840 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | - | tig0021250:71855-71874 | Msa1389250:intron | 30.0% | |
| ATTGAAATCCAATAGTCGTA+TGG | + | tig0021250:71919-71938 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | + | tig0021250:71961-71980 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | - | tig0021250:71960-71979 | Msa1389250:CDS | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | - | tig0021250:71961-71980 | Msa1389250:CDS | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | + | tig0021250:71969-71988 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | + | tig0021250:72020-72039 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | + | tig0021250:72025-72044 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | - | tig0021250:72155-72174 | Msa1389250:CDS | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | + | tig0021250:72187-72206 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | - | tig0021250:72184-72203 | Msa1389250:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | tig0021250:72231-72250 | Msa1389250:CDS | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | + | tig0021250:72257-72276 | None:intergenic | 30.0% | |
| TAAAGTAAAGTGAGTGTTTG+AGG | + | tig0021250:72410-72429 | None:intergenic | 30.0% | |
| CAAACACTCACTTTACTTTA+CGG | - | tig0021250:72410-72429 | Msa1389250:CDS | 30.0% | |
| ! | TTTTTGACAAGACACATCTA+TGG | - | tig0021250:72581-72600 | Msa1389250:CDS | 30.0% |
| CATTATTGTCCTCACATAAT+AGG | + | tig0021250:71821-71840 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | - | tig0021250:71855-71874 | Msa1389250:intron | 30.0% | |
| ATTGAAATCCAATAGTCGTA+TGG | + | tig0021250:71919-71938 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | + | tig0021250:71961-71980 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | - | tig0021250:71960-71979 | Msa1389250:CDS | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | - | tig0021250:71961-71980 | Msa1389250:CDS | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | + | tig0021250:71969-71988 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | + | tig0021250:72020-72039 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | + | tig0021250:72025-72044 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | - | tig0021250:72155-72174 | Msa1389250:CDS | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | + | tig0021250:72187-72206 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | - | tig0021250:72184-72203 | Msa1389250:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | tig0021250:72231-72250 | Msa1389250:CDS | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | + | tig0021250:72257-72276 | None:intergenic | 30.0% | |
| TAAAGTAAAGTGAGTGTTTG+AGG | + | tig0021250:72410-72429 | None:intergenic | 30.0% | |
| CAAACACTCACTTTACTTTA+CGG | - | tig0021250:72410-72429 | Msa1389250:CDS | 30.0% | |
| ! | TTTTTGACAAGACACATCTA+TGG | - | tig0021250:72581-72600 | Msa1389250:CDS | 30.0% |
| TATTAGTAACAGCACGACAA+GGG | + | tig0021250:71664-71683 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | tig0021250:71721-71740 | Msa1389250:intron | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | - | tig0021250:71754-71773 | Msa1389250:intron | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | + | tig0021250:71767-71786 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | + | tig0021250:71965-71984 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | + | tig0021250:71966-71985 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | + | tig0021250:72021-72040 | None:intergenic | 35.0% | |
| CCTTCATCAATATATTCCGA+CGG | + | tig0021250:72101-72120 | None:intergenic | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | - | tig0021250:72158-72177 | Msa1389250:CDS | 35.0% | |
| CTCAGTAGTCTTTGTAATGA+AGG | - | tig0021250:72329-72348 | Msa1389250:CDS | 35.0% | |
| CTGGATCTATACATAAATGC+TGG | + | tig0021250:72382-72401 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | - | tig0021250:72380-72399 | Msa1389250:CDS | 35.0% | |
| AATCTTTATCATGTGCCGTA+GGG | + | tig0021250:72484-72503 | None:intergenic | 35.0% | |
| TATTAGTAACAGCACGACAA+GGG | + | tig0021250:71664-71683 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | tig0021250:71721-71740 | Msa1389250:intron | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | - | tig0021250:71754-71773 | Msa1389250:intron | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | + | tig0021250:71767-71786 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | + | tig0021250:71965-71984 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | + | tig0021250:71966-71985 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | + | tig0021250:72021-72040 | None:intergenic | 35.0% | |
| CCTTCATCAATATATTCCGA+CGG | + | tig0021250:72101-72120 | None:intergenic | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | - | tig0021250:72158-72177 | Msa1389250:CDS | 35.0% | |
| CTCAGTAGTCTTTGTAATGA+AGG | - | tig0021250:72329-72348 | Msa1389250:CDS | 35.0% | |
| CTGGATCTATACATAAATGC+TGG | + | tig0021250:72382-72401 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | - | tig0021250:72380-72399 | Msa1389250:CDS | 35.0% | |
| AATCTTTATCATGTGCCGTA+GGG | + | tig0021250:72484-72503 | None:intergenic | 35.0% | |
| GTATTAGTAACAGCACGACA+AGG | + | tig0021250:71665-71684 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | - | tig0021250:71690-71709 | Msa1389250:intron | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | + | tig0021250:71768-71787 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | + | tig0021250:71771-71790 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | - | tig0021250:71780-71799 | Msa1389250:intron | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | - | tig0021250:71809-71828 | Msa1389250:intron | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | - | tig0021250:71908-71927 | Msa1389250:CDS | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | + | tig0021250:72015-72034 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | - | tig0021250:72014-72033 | Msa1389250:CDS | 40.0% |
| TGTGAGCTGTAAAAATCCGT+CGG | - | tig0021250:72082-72101 | Msa1389250:CDS | 40.0% | |
| CCGTCGGAATATATTGATGA+AGG | - | tig0021250:72098-72117 | Msa1389250:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | tig0021250:72191-72210 | Msa1389250:CDS | 40.0% |
| ! | ATGCGTCGAATGGTGTTTTA+TGG | - | tig0021250:72290-72309 | Msa1389250:CDS | 40.0% |
| GAATCTTTATCATGTGCCGT+AGG | + | tig0021250:72485-72504 | None:intergenic | 40.0% | |
| GTATTAGTAACAGCACGACA+AGG | + | tig0021250:71665-71684 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | - | tig0021250:71690-71709 | Msa1389250:intron | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | + | tig0021250:71768-71787 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | + | tig0021250:71771-71790 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | - | tig0021250:71780-71799 | Msa1389250:intron | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | - | tig0021250:71809-71828 | Msa1389250:intron | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | - | tig0021250:71908-71927 | Msa1389250:CDS | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | + | tig0021250:72015-72034 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | - | tig0021250:72014-72033 | Msa1389250:CDS | 40.0% |
| TGTGAGCTGTAAAAATCCGT+CGG | - | tig0021250:72082-72101 | Msa1389250:CDS | 40.0% | |
| CCGTCGGAATATATTGATGA+AGG | - | tig0021250:72098-72117 | Msa1389250:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | tig0021250:72191-72210 | Msa1389250:CDS | 40.0% |
| ! | ATGCGTCGAATGGTGTTTTA+TGG | - | tig0021250:72290-72309 | Msa1389250:CDS | 40.0% |
| GAATCTTTATCATGTGCCGT+AGG | + | tig0021250:72485-72504 | None:intergenic | 40.0% | |
| TAACAGCACGACAAGGGTTA+AGG | + | tig0021250:71658-71677 | None:intergenic | 45.0% | |
| GAGTCATGTTCAAGAAGGTG+CGG | - | tig0021250:71726-71745 | Msa1389250:intron | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | + | tig0021250:71792-71811 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | - | tig0021250:71790-71809 | Msa1389250:intron | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | tig0021250:72197-72216 | Msa1389250:CDS | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | - | tig0021250:72245-72264 | Msa1389250:CDS | 45.0% | |
| TTCTACAGACATGCGTCGAA+TGG | - | tig0021250:72280-72299 | Msa1389250:CDS | 45.0% | |
| TAACAGCACGACAAGGGTTA+AGG | + | tig0021250:71658-71677 | None:intergenic | 45.0% | |
| GAGTCATGTTCAAGAAGGTG+CGG | - | tig0021250:71726-71745 | Msa1389250:intron | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | + | tig0021250:71792-71811 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | - | tig0021250:71790-71809 | Msa1389250:intron | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | tig0021250:72197-72216 | Msa1389250:CDS | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | - | tig0021250:72245-72264 | Msa1389250:CDS | 45.0% | |
| TTCTACAGACATGCGTCGAA+TGG | - | tig0021250:72280-72299 | Msa1389250:CDS | 45.0% | |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | tig0021250:72198-72217 | Msa1389250:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | - | tig0021250:72208-72227 | Msa1389250:CDS | 50.0% |
| ! | GTGAGTGTTTGAGGCAAACC+TGG | + | tig0021250:72401-72420 | None:intergenic | 50.0% |
| TGCTGATGACATGTGCCCTA+CGG | - | tig0021250:72466-72485 | Msa1389250:CDS | 50.0% | |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | tig0021250:72198-72217 | Msa1389250:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | - | tig0021250:72208-72227 | Msa1389250:CDS | 50.0% |
| ! | GTGAGTGTTTGAGGCAAACC+TGG | + | tig0021250:72401-72420 | None:intergenic | 50.0% |
| TGCTGATGACATGTGCCCTA+CGG | - | tig0021250:72466-72485 | Msa1389250:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021250 | gene | 71648 | 72647 | 71648 | ID=Msa1389250;Name=Msa1389250 |
| tig0021250 | mRNA | 71648 | 72647 | 71648 | ID=Msa1389250-mRNA-1;Parent=Msa1389250;Name=Msa1389250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|0.5|1|1|2|0|253 |
| tig0021250 | exon | 71894 | 72647 | 71894 | ID=Msa1389250-mRNA-1:exon:11506;Parent=Msa1389250-mRNA-1 |
| tig0021250 | exon | 71648 | 71655 | 71648 | ID=Msa1389250-mRNA-1:exon:11505;Parent=Msa1389250-mRNA-1 |
| tig0021250 | CDS | 71894 | 72647 | 71894 | ID=Msa1389250-mRNA-1:cds;Parent=Msa1389250-mRNA-1 |
| tig0021250 | CDS | 71648 | 71655 | 71648 | ID=Msa1389250-mRNA-1:cds;Parent=Msa1389250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
