Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389180 | AES59897.2 | 75.210 | 238 | 52 | 5 | 15 | 248 | 15 | 249 | 2.23e-109 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389180 | G7I977 | 75.210 | 238 | 52 | 5 | 15 | 248 | 15 | 249 | 1.07e-109 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011790 | Msa1389180 | 0.808847 | 2.532946e-50 | -8.615850e-47 |
| Msa0021340 | Msa1389180 | 0.809075 | 2.263577e-50 | -8.615850e-47 |
| Msa1383140 | Msa1389180 | 0.801401 | 9.162288e-49 | -8.615850e-47 |
| Msa1389180 | Msa1389250 | 0.934037 | 7.494095e-96 | -8.615850e-47 |
| Msa0152110 | Msa1389180 | 0.809602 | 1.744681e-50 | -8.615850e-47 |
| Msa0229630 | Msa1389180 | 0.842598 | 2.345310e-58 | -8.615850e-47 |
| Msa0968410 | Msa1389180 | 0.826629 | 2.443330e-54 | -8.615850e-47 |
| Msa0968430 | Msa1389180 | 0.852606 | 4.135322e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389180 | MtrunA17_Chr1g0160711 | 75.000 | 232 | 52 | 4 | 21 | 248 | 17 | 246 | 6.12e-112 | 336 |
| Msa1389180 | MtrunA17_Chr1g0160761 | 68.872 | 257 | 67 | 4 | 1 | 248 | 1 | 253 | 2.68e-108 | 327 |
| Msa1389180 | MtrunA17_Chr1g0160721 | 60.474 | 253 | 87 | 5 | 1 | 251 | 12 | 253 | 5.41e-87 | 272 |
| Msa1389180 | MtrunA17_Chr1g0160661 | 57.312 | 253 | 95 | 5 | 1 | 251 | 27 | 268 | 2.52e-83 | 258 |
| Msa1389180 | MtrunA17_Chr1g0160561 | 51.711 | 263 | 105 | 8 | 2 | 250 | 7 | 261 | 4.56e-75 | 241 |
| Msa1389180 | MtrunA17_Chr1g0160701 | 58.091 | 241 | 80 | 10 | 17 | 246 | 32 | 262 | 4.36e-71 | 231 |
| Msa1389180 | MtrunA17_Chr1g0158061 | 35.377 | 212 | 116 | 8 | 33 | 232 | 35 | 237 | 1.73e-28 | 110 |
| Msa1389180 | MtrunA17_Chr1g0157791 | 34.221 | 263 | 140 | 11 | 7 | 247 | 6 | 257 | 2.56e-28 | 114 |
| Msa1389180 | MtrunA17_Chr1g0158151 | 32.982 | 285 | 152 | 14 | 1 | 256 | 1 | 275 | 4.37e-27 | 110 |
| Msa1389180 | MtrunA17_Chr1g0158191 | 33.463 | 257 | 124 | 13 | 10 | 234 | 4 | 245 | 4.14e-26 | 107 |
| Msa1389180 | MtrunA17_Chr1g0157991 | 34.802 | 227 | 123 | 8 | 24 | 233 | 28 | 246 | 1.06e-25 | 106 |
| Msa1389180 | MtrunA17_Chr1g0157961 | 34.529 | 223 | 125 | 8 | 24 | 233 | 33 | 247 | 1.50e-25 | 102 |
| Msa1389180 | MtrunA17_Chr3g0088331 | 32.751 | 229 | 119 | 10 | 21 | 234 | 34 | 242 | 2.96e-23 | 96.3 |
| Msa1389180 | MtrunA17_Chr1g0158411 | 32.110 | 218 | 118 | 7 | 30 | 234 | 51 | 251 | 1.65e-22 | 97.1 |
| Msa1389180 | MtrunA17_Chr1g0158761 | 33.333 | 246 | 124 | 12 | 1 | 234 | 1 | 218 | 2.00e-22 | 96.7 |
| Msa1389180 | MtrunA17_Chr1g0158041 | 32.411 | 253 | 132 | 9 | 33 | 255 | 36 | 279 | 4.01e-22 | 95.9 |
| Msa1389180 | MtrunA17_Chr1g0157881 | 30.153 | 262 | 111 | 11 | 33 | 234 | 60 | 309 | 4.39e-22 | 95.9 |
| Msa1389180 | MtrunA17_Chr1g0158461 | 29.588 | 267 | 146 | 11 | 1 | 234 | 17 | 274 | 9.95e-22 | 92.8 |
| Msa1389180 | MtrunA17_Chr1g0158661 | 29.200 | 250 | 143 | 8 | 27 | 257 | 33 | 267 | 1.36e-21 | 94.4 |
| Msa1389180 | MtrunA17_Chr6g0467711 | 34.703 | 219 | 107 | 9 | 33 | 234 | 48 | 247 | 1.43e-21 | 94.4 |
| Msa1389180 | MtrunA17_Chr1g0158541 | 32.114 | 246 | 140 | 10 | 5 | 234 | 16 | 250 | 4.71e-20 | 89.7 |
| Msa1389180 | MtrunA17_Chr1g0158731 | 28.455 | 246 | 149 | 9 | 4 | 234 | 8 | 241 | 1.07e-18 | 84.0 |
| Msa1389180 | MtrunA17_Chr1g0158631 | 29.688 | 256 | 129 | 10 | 27 | 251 | 33 | 268 | 1.20e-18 | 85.9 |
| Msa1389180 | MtrunA17_Chr1g0158331 | 29.811 | 265 | 141 | 13 | 1 | 234 | 17 | 267 | 1.21e-18 | 84.3 |
| Msa1389180 | MtrunA17_Chr1g0157911 | 30.180 | 222 | 122 | 9 | 33 | 234 | 42 | 250 | 6.67e-18 | 83.6 |
| Msa1389180 | MtrunA17_Chr1g0157861 | 27.027 | 296 | 129 | 13 | 33 | 269 | 45 | 312 | 6.92e-18 | 83.6 |
| Msa1389180 | MtrunA17_Chr1g0158121 | 45.263 | 95 | 45 | 3 | 24 | 116 | 29 | 118 | 5.80e-14 | 67.4 |
| Msa1389180 | MtrunA17_Chr1g0158301 | 28.862 | 246 | 144 | 11 | 5 | 234 | 18 | 248 | 1.47e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | tig0021250:-6385 | Msa1389180:CDS |
| TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | tig0021250:-6384 | Msa1389180:CDS |
| TTTATGGATTTGAACTTTCT+TGG | 0.219600 | tig0021250:-6039 | Msa1389180:CDS |
| CATTATTGTCCTCACATAAT+AGG | 0.236387 | tig0021250:+6527 | None:intergenic |
| CAACTTCACCATACGACTAT+TGG | 0.252740 | tig0021250:-6437 | Msa1389180:CDS |
| GTGTTCTTGCAGATGGCTAC+TGG | 0.268248 | tig0021250:-4008 | Msa1389180:intron |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | tig0021250:+6556 | None:intergenic |
| TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | tig0021250:+6379 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | tig0021250:-6154 | Msa1389180:CDS |
| CTCAATAGTCTTTGTAATGA+AGG | 0.356928 | tig0021250:-6016 | Msa1389180:CDS |
| TTTAGCATGTCTTGAATTAA+GGG | 0.366212 | tig0021250:+3939 | None:intergenic |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | tig0021250:-6147 | Msa1389180:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | tig0021250:-6137 | Msa1389180:CDS |
| CAGCATTTATGTATAGATCC+AGG | 0.447944 | tig0021250:-5965 | Msa1389180:intron |
| TATGAAAGCCGCGGAAGGTA+GGG | 0.458004 | tig0021250:+3978 | None:intergenic |
| TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | tig0021250:+6323 | None:intergenic |
| TAACAGCACGACAAGGGTTA+AGG | 0.463192 | tig0021250:+6690 | None:intergenic |
| ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | tig0021250:-6100 | Msa1389180:CDS |
| GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | tig0021250:-6187 | Msa1389180:CDS |
| TGTTCTTGCAGATGGCTACT+GGG | 0.473780 | tig0021250:-4007 | Msa1389180:intron |
| TACGAGAATTCTTTCTATGT+TGG | 0.482804 | tig0021250:-6190 | Msa1389180:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | tig0021250:-6148 | Msa1389180:CDS |
| GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | tig0021250:+6327 | None:intergenic |
| ATATGAAAGCCGCGGAAGGT+AGG | 0.528563 | tig0021250:+3977 | None:intergenic |
| CTGGATCTATACATAAATGC+TGG | 0.534443 | tig0021250:+5966 | None:intergenic |
| CCGTCGGAATATATTGATGA+AGG | 0.536336 | tig0021250:-6247 | Msa1389180:CDS |
| TTCTACAGACATGCGTCGAA+TGG | 0.543277 | tig0021250:-6065 | Msa1389180:CDS |
| TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | tig0021250:+6387 | None:intergenic |
| ATGAAAGCCGCGGAAGGTAG+GGG | 0.556160 | tig0021250:+3979 | None:intergenic |
| ATTGAAATCCAATAGTCGTA+TGG | 0.568248 | tig0021250:+6429 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | tig0021250:-6114 | Msa1389180:CDS |
| GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | tig0021250:+6383 | None:intergenic |
| TTCTCGTACAACAAAGTGCA+TGG | 0.590113 | tig0021250:-6655 | Msa1389180:CDS |
| ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | tig0021250:+6091 | None:intergenic |
| ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | tig0021250:+6333 | None:intergenic |
| TCTTGAATTAAGGGAATGTG+AGG | 0.610701 | tig0021250:+3948 | None:intergenic |
| AACAAGAGTCATGTTCAAGA+AGG | 0.614007 | tig0021250:-6624 | Msa1389180:CDS |
| CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | tig0021250:-6555 | Msa1389180:CDS |
| AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | tig0021250:+6382 | None:intergenic |
| TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | tig0021250:+6328 | None:intergenic |
| CCTTCATCAATATATTCCGA+CGG | 0.626569 | tig0021250:+6247 | None:intergenic |
| GTATTAGTAACAGCACGACA+AGG | 0.628217 | tig0021250:+6683 | None:intergenic |
| TTACATATGAAAGCCGCGGA+AGG | 0.648203 | tig0021250:+3973 | None:intergenic |
| TATTAGTAACAGCACGACAA+GGG | 0.651789 | tig0021250:+6684 | None:intergenic |
| GAGTCATGTTCAAGAAGGTG+CGG | 0.657869 | tig0021250:-6619 | Msa1389180:CDS |
| CTTGAATTAAGGGAATGTGA+GGG | 0.664266 | tig0021250:+3949 | None:intergenic |
| TATGAATTTGAAGAACACCA+TGG | 0.674399 | tig0021250:-6490 | Msa1389180:CDS |
| GAGGTACAACCTATTATGTG+AGG | 0.678478 | tig0021250:-6536 | Msa1389180:CDS |
| GGGCTTACATATGAAAGCCG+CGG | 0.686004 | tig0021250:+3969 | None:intergenic |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | tig0021250:-6565 | Msa1389180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTTATATTA+TGG | - | tig0021250:4721-4740 | Msa1389180:intron | 0.0% |
| !!! | TTTTTTTTTATTTATATTAT+GGG | - | tig0021250:4722-4741 | Msa1389180:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTGTGAT+GGG | + | tig0021250:4957-4976 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTGA+TGG | + | tig0021250:4958-4977 | None:intergenic | 10.0% |
| !! | TTTCCAAATAAATTATATTT+GGG | - | tig0021250:5168-5187 | Msa1389180:intron | 10.0% |
| !! | GCATTAAATTTAAAAATAAA+AGG | + | tig0021250:6226-6245 | None:intergenic | 10.0% |
| !! | GTTTCCAAATAAATTATATT+TGG | - | tig0021250:5167-5186 | Msa1389180:intron | 15.0% |
| !! | TTCCAAATAAATTATATTTG+GGG | - | tig0021250:5169-5188 | Msa1389180:intron | 15.0% |
| !!! | TGTTACATTTATTTAGTTTT+TGG | - | tig0021250:6038-6057 | Msa1389180:CDS | 15.0% |
| !! | GTAAATAAGAGAAAAATTAA+GGG | + | tig0021250:6341-6360 | None:intergenic | 15.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | + | tig0021250:4157-4176 | None:intergenic | 20.0% |
| !! | TACCCCAAATATAATTTATT+TGG | + | tig0021250:5174-5193 | None:intergenic | 20.0% |
| !!! | GAGTTACTTGTTTTTTTTTT+GGG | + | tig0021250:5214-5233 | None:intergenic | 20.0% |
| !! | TTCAATTTGAAGAGATTTAA+GGG | - | tig0021250:5770-5789 | Msa1389180:intron | 20.0% |
| !! | AATTTGTATTGTATCAATGT+AGG | + | tig0021250:5897-5916 | None:intergenic | 20.0% |
| !!! | GAGCATGTATTTTTATATTT+GGG | + | tig0021250:5979-5998 | None:intergenic | 20.0% |
| !!! | TGAGCATGTATTTTTATATT+TGG | + | tig0021250:5980-5999 | None:intergenic | 20.0% |
| !!! | GAAGAAATTGAGATATTTTA+AGG | - | tig0021250:6069-6088 | Msa1389180:CDS | 20.0% |
| !!! | AGTATCTAGTTTAGTAATTT+TGG | + | tig0021250:6156-6175 | None:intergenic | 20.0% |
| !! | TACTAAACTAGATACTAAAA+TGG | - | tig0021250:6160-6179 | Msa1389180:CDS | 20.0% |
| !! | TAGATACTAAAATGGATAAA+GGG | - | tig0021250:6168-6187 | Msa1389180:CDS | 20.0% |
| !! | GGTAAATAAGAGAAAAATTA+AGG | + | tig0021250:6342-6361 | None:intergenic | 20.0% |
| !!! | TTTTATTACCATTTCGAAAT+TGG | - | tig0021250:6474-6493 | Msa1389180:CDS | 20.0% |
| !! | TATATCCATTGTAAACAAAT+TGG | - | tig0021250:6566-6585 | Msa1389180:CDS | 20.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | - | tig0021250:4467-4486 | Msa1389180:intron | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | tig0021250:4588-4607 | Msa1389180:intron | 25.0% |
| ! | GATATAATAGTACAAGAAGT+GGG | - | tig0021250:5011-5030 | Msa1389180:intron | 25.0% |
| !!! | TTGTCAAAATGGTCTTATTT+AGG | + | tig0021250:5058-5077 | None:intergenic | 25.0% |
| ! | GTTATGTATGTTTGTCAAAA+TGG | + | tig0021250:5069-5088 | None:intergenic | 25.0% |
| !!! | GGAGTTACTTGTTTTTTTTT+TGG | + | tig0021250:5215-5234 | None:intergenic | 25.0% |
| !!! | CATATCATGTGTGTTTTTTT+TGG | + | tig0021250:5729-5748 | None:intergenic | 25.0% |
| ! | CAAAAAAAACACACATGATA+TGG | - | tig0021250:5727-5746 | Msa1389180:intron | 25.0% |
| ! | CTTCAATTTGAAGAGATTTA+AGG | - | tig0021250:5769-5788 | Msa1389180:intron | 25.0% |
| ! | AAATCACTTGGGATTTAATT+GGG | + | tig0021250:5872-5891 | None:intergenic | 25.0% |
| !!! | TGTATTTTTATATTTGGGAG+TGG | + | tig0021250:5974-5993 | None:intergenic | 25.0% |
| ! | CTAGATACTAAAATGGATAA+AGG | - | tig0021250:6167-6186 | Msa1389180:CDS | 25.0% |
| ! | AGATACTAAAATGGATAAAG+GGG | - | tig0021250:6169-6188 | Msa1389180:CDS | 25.0% |
| !! | AAATGCAACTTTTATCTAGT+GGG | - | tig0021250:6266-6285 | Msa1389180:CDS | 25.0% |
| !! | AACTACCAATTTGTTTACAA+TGG | + | tig0021250:6574-6593 | None:intergenic | 25.0% |
| ! | TTTAGCATGTCTTGAATTAA+GGG | + | tig0021250:6691-6710 | None:intergenic | 25.0% |
| !! | TTTTAGCATGTCTTGAATTA+AGG | + | tig0021250:6692-6711 | None:intergenic | 25.0% |
| CATTATTGTCCTCACATAAT+AGG | + | tig0021250:4103-4122 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | - | tig0021250:4137-4156 | Msa1389180:intron | 30.0% | |
| ATTGAAATCCAATAGTCGTA+TGG | + | tig0021250:4201-4220 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | + | tig0021250:4243-4262 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | - | tig0021250:4242-4261 | Msa1389180:intron | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | - | tig0021250:4243-4262 | Msa1389180:intron | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | + | tig0021250:4251-4270 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | + | tig0021250:4302-4321 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | + | tig0021250:4307-4326 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | - | tig0021250:4437-4456 | Msa1389180:intron | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | + | tig0021250:4469-4488 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | - | tig0021250:4466-4485 | Msa1389180:intron | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | tig0021250:4513-4532 | Msa1389180:intron | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | + | tig0021250:4539-4558 | None:intergenic | 30.0% | |
| CTCAATAGTCTTTGTAATGA+AGG | - | tig0021250:4611-4630 | Msa1389180:intron | 30.0% | |
| TAAAGTAAAGTGAGTGTTTG+AGG | + | tig0021250:4692-4711 | None:intergenic | 30.0% | |
| CAAACACTCACTTTACTTTA+CGG | - | tig0021250:4692-4711 | Msa1389180:intron | 30.0% | |
| ! | TTTTTGACAAGACACATCTA+TGG | - | tig0021250:4864-4883 | Msa1389180:intron | 30.0% |
| CGATATAATAGTACAAGAAG+TGG | - | tig0021250:5010-5029 | Msa1389180:intron | 30.0% | |
| CAAGTAACTCCTTAAAGTTA+AGG | - | tig0021250:5224-5243 | Msa1389180:intron | 30.0% | |
| ! | GCTTTCTTTTACATGATTTC+AGG | + | tig0021250:5282-5301 | None:intergenic | 30.0% |
| TTGTATTGGAAGTAGTTTCT+TGG | + | tig0021250:5449-5468 | None:intergenic | 30.0% | |
| ! | ACAGGGAGAAATTTTTGTAT+TGG | + | tig0021250:5463-5482 | None:intergenic | 30.0% |
| !! | TGTTTGGTTTGACTTTAGTT+TGG | + | tig0021250:5568-5587 | None:intergenic | 30.0% |
| ATTTCATCTTTAGGTGGTTA+GGG | + | tig0021250:5645-5664 | None:intergenic | 30.0% | |
| TATTTCATCTTTAGGTGGTT+AGG | + | tig0021250:5646-5665 | None:intergenic | 30.0% | |
| CTAAAGATGAAATACCACAT+CGG | - | tig0021250:5652-5671 | Msa1389180:intron | 30.0% | |
| AAAGTGAAGTAACAAACTAG+TGG | - | tig0021250:5682-5701 | Msa1389180:intron | 30.0% | |
| AAGTGAAGTAACAAACTAGT+GGG | - | tig0021250:5683-5702 | Msa1389180:intron | 30.0% | |
| !!! | GTGTGTTTTTTTTGGTTTTG+CGG | + | tig0021250:5721-5740 | None:intergenic | 30.0% |
| AATCACTTGGGATTTAATTG+GGG | + | tig0021250:5871-5890 | None:intergenic | 30.0% | |
| GAAATCACTTGGGATTTAAT+TGG | + | tig0021250:5873-5892 | None:intergenic | 30.0% | |
| ! | GAAATGCAACTTTTATCTAG+TGG | - | tig0021250:6265-6284 | Msa1389180:CDS | 30.0% |
| ATGTAACACCAATTTCGAAA+TGG | + | tig0021250:6485-6504 | None:intergenic | 30.0% | |
| TATTAGTAACAGCACGACAA+GGG | + | tig0021250:3946-3965 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | tig0021250:4003-4022 | Msa1389180:intron | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | - | tig0021250:4036-4055 | Msa1389180:intron | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | + | tig0021250:4049-4068 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | + | tig0021250:4247-4266 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | + | tig0021250:4248-4267 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | + | tig0021250:4303-4322 | None:intergenic | 35.0% | |
| CCTTCATCAATATATTCCGA+CGG | + | tig0021250:4383-4402 | None:intergenic | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | - | tig0021250:4440-4459 | Msa1389180:intron | 35.0% | |
| CTGGATCTATACATAAATGC+TGG | + | tig0021250:4664-4683 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | - | tig0021250:4662-4681 | Msa1389180:intron | 35.0% | |
| AATCTTTATCATGTGCCGTA+GGG | + | tig0021250:4766-4785 | None:intergenic | 35.0% | |
| AGAAGTGGGAAATACTTCTA+TGG | - | tig0021250:5025-5044 | Msa1389180:intron | 35.0% | |
| ACACGCACACAACTTAAAAT+AGG | + | tig0021250:5149-5168 | None:intergenic | 35.0% | |
| ! | ACATGATTTCAGGTATGCTT+AGG | + | tig0021250:5272-5291 | None:intergenic | 35.0% |
| !! | TATTAGTGTTGGTCTTGTGT+TGG | + | tig0021250:5407-5426 | None:intergenic | 35.0% |
| ACAAGACCAACACTAATAGT+AGG | - | tig0021250:5409-5428 | Msa1389180:intron | 35.0% | |
| CATGTACCTACTATTAGTGT+TGG | + | tig0021250:5418-5437 | None:intergenic | 35.0% | |
| CAACACTAATAGTAGGTACA+TGG | - | tig0021250:5416-5435 | Msa1389180:intron | 35.0% | |
| !! | TATTGATCAGTTGGTAGACA+GGG | + | tig0021250:5480-5499 | None:intergenic | 35.0% |
| TTTCAGACACACCATACAAT+AGG | - | tig0021250:5539-5558 | Msa1389180:intron | 35.0% | |
| TAGTTTGGAAGCCTATTGTA+TGG | + | tig0021250:5553-5572 | None:intergenic | 35.0% | |
| ! | ACTGGGTAGTAGTTTTTGTT+TGG | + | tig0021250:5584-5603 | None:intergenic | 35.0% |
| TGTGGTATTTCATCTTTAGG+TGG | + | tig0021250:5651-5670 | None:intergenic | 35.0% | |
| CGATGTGGTATTTCATCTTT+AGG | + | tig0021250:5654-5673 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTTTGGTTTTGCGG+AGG | + | tig0021250:5718-5737 | None:intergenic | 35.0% |
| TTTGAAGAGATTTAAGGGAG+TGG | - | tig0021250:5775-5794 | Msa1389180:intron | 35.0% | |
| ! | TTCTCAACACCTTCTAAGAA+GGG | - | tig0021250:5828-5847 | Msa1389180:intron | 35.0% |
| CAATGTAGGTGAAATCACTT+GGG | + | tig0021250:5883-5902 | None:intergenic | 35.0% | |
| TCAATGTAGGTGAAATCACT+TGG | + | tig0021250:5884-5903 | None:intergenic | 35.0% | |
| TTCCACATCCATATGTTAGA+GGG | - | tig0021250:6383-6402 | Msa1389180:CDS | 35.0% | |
| GCAAGAACACAGAAAAAAGA+TGG | + | tig0021250:6609-6628 | None:intergenic | 35.0% | |
| ! | TTTTTCTGTGTTCTTGCAGA+TGG | - | tig0021250:6612-6631 | Msa1389180:CDS | 35.0% |
| CTTGAATTAAGGGAATGTGA+GGG | + | tig0021250:6681-6700 | None:intergenic | 35.0% | |
| TCTTGAATTAAGGGAATGTG+AGG | + | tig0021250:6682-6701 | None:intergenic | 35.0% | |
| GTATTAGTAACAGCACGACA+AGG | + | tig0021250:3947-3966 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | - | tig0021250:3972-3991 | Msa1389180:CDS | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | + | tig0021250:4050-4069 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | + | tig0021250:4053-4072 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | - | tig0021250:4062-4081 | Msa1389180:intron | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | - | tig0021250:4091-4110 | Msa1389180:intron | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | - | tig0021250:4190-4209 | Msa1389180:intron | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | + | tig0021250:4297-4316 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | - | tig0021250:4296-4315 | Msa1389180:intron | 40.0% |
| TGTGAGCTGTAAAAATCCGT+CGG | - | tig0021250:4364-4383 | Msa1389180:intron | 40.0% | |
| CCGTCGGAATATATTGATGA+AGG | - | tig0021250:4380-4399 | Msa1389180:intron | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | tig0021250:4473-4492 | Msa1389180:intron | 40.0% |
| ! | ATGCGTCGAATGGTGTTTTA+TGG | - | tig0021250:4572-4591 | Msa1389180:intron | 40.0% |
| GAATCTTTATCATGTGCCGT+AGG | + | tig0021250:4767-4786 | None:intergenic | 40.0% | |
| ! | TTGGGGCATCCTTAACTTTA+AGG | + | tig0021250:5236-5255 | None:intergenic | 40.0% |
| TTAGGAAGCTAGTGAGCATT+GGG | + | tig0021250:5254-5273 | None:intergenic | 40.0% | |
| !! | CTATTGATCAGTTGGTAGAC+AGG | + | tig0021250:5481-5500 | None:intergenic | 40.0% |
| GTCTACCAACTGATCAATAG+AGG | - | tig0021250:5481-5500 | Msa1389180:intron | 40.0% | |
| GACAACCTCTATTGATCAGT+TGG | + | tig0021250:5489-5508 | None:intergenic | 40.0% | |
| GTTTGTGCACAATCAGTCAA+GGG | + | tig0021250:5613-5632 | None:intergenic | 40.0% | |
| AGTTTGTGCACAATCAGTCA+AGG | + | tig0021250:5614-5633 | None:intergenic | 40.0% | |
| TCTTTAGGTGGTTAGGGATT+TGG | + | tig0021250:5639-5658 | None:intergenic | 40.0% | |
| AGATGAAATACCACATCGGA+AGG | - | tig0021250:5656-5675 | Msa1389180:intron | 40.0% | |
| TGAAGTAACAAACTAGTGGG+TGG | - | tig0021250:5686-5705 | Msa1389180:intron | 40.0% | |
| AGGGAGTGGAAATCCTATAT+CGG | - | tig0021250:5789-5808 | Msa1389180:intron | 40.0% | |
| !! | CTTCTTAGAAGGTGTTGAGA+AGG | + | tig0021250:5829-5848 | None:intergenic | 40.0% |
| ! | CTTCTCAACACCTTCTAAGA+AGG | - | tig0021250:5827-5846 | Msa1389180:intron | 40.0% |
| ! | TCTCAACACCTTCTAAGAAG+GGG | - | tig0021250:5829-5848 | Msa1389180:intron | 40.0% |
| TATATTTGGGAGTGGTAGCT+AGG | + | tig0021250:5966-5985 | None:intergenic | 40.0% | |
| ! | GACTAGTGGGAAAGGTATAA+TGG | + | tig0021250:6363-6382 | None:intergenic | 40.0% |
| TATGGATGTGGAAGACTAGT+GGG | + | tig0021250:6376-6395 | None:intergenic | 40.0% | |
| ATATGGATGTGGAAGACTAG+TGG | + | tig0021250:6377-6396 | None:intergenic | 40.0% | |
| CTTCCACATCCATATGTTAG+AGG | - | tig0021250:6382-6401 | Msa1389180:CDS | 40.0% | |
| ACTCAACAAGTGAGTGAGTA+CGG | - | tig0021250:6531-6550 | Msa1389180:CDS | 40.0% | |
| TAACAGCACGACAAGGGTTA+AGG | + | tig0021250:3940-3959 | None:intergenic | 45.0% | |
| GAGTCATGTTCAAGAAGGTG+CGG | - | tig0021250:4008-4027 | Msa1389180:intron | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | + | tig0021250:4074-4093 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | - | tig0021250:4072-4091 | Msa1389180:intron | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | tig0021250:4479-4498 | Msa1389180:intron | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | - | tig0021250:4527-4546 | Msa1389180:intron | 45.0% | |
| TTCTACAGACATGCGTCGAA+TGG | - | tig0021250:4562-4581 | Msa1389180:intron | 45.0% | |
| ! | TAGGAAGCTAGTGAGCATTG+GGG | + | tig0021250:5253-5272 | None:intergenic | 45.0% |
| CTTAGGAAGCTAGTGAGCAT+TGG | + | tig0021250:5255-5274 | None:intergenic | 45.0% | |
| AAAAAAGACACGCCGTAACG+AGG | - | tig0021250:5302-5321 | Msa1389180:intron | 45.0% | |
| ! | TGGCCTTTCTTTGGTTGGTT+GGG | + | tig0021250:5347-5366 | None:intergenic | 45.0% |
| ATGGCCTTTCTTTGGTTGGT+TGG | + | tig0021250:5348-5367 | None:intergenic | 45.0% | |
| TCTGAAAGTCTCGCAATGAG+CGG | + | tig0021250:5526-5545 | None:intergenic | 45.0% | |
| !! | TCACTTTTGTCCTTCCGATG+TGG | + | tig0021250:5669-5688 | None:intergenic | 45.0% |
| GTTGGATGCTTCTCCGATAT+AGG | + | tig0021250:5805-5824 | None:intergenic | 45.0% | |
| !! | AGAAGGTGTTGAGAAGGAGT+TGG | + | tig0021250:5823-5842 | None:intergenic | 45.0% |
| CTCTTCATCCCCTTCTTAGA+AGG | + | tig0021250:5840-5859 | None:intergenic | 45.0% | |
| ATGTGGAAGACTAGTGGGAA+AGG | + | tig0021250:6371-6390 | None:intergenic | 45.0% | |
| CTCCCTCTAACATATGGATG+TGG | + | tig0021250:6388-6407 | None:intergenic | 45.0% | |
| CTGACACTCCCTCTAACATA+TGG | + | tig0021250:6394-6413 | None:intergenic | 45.0% | |
| TGTTCTTGCAGATGGCTACT+GGG | - | tig0021250:6620-6639 | Msa1389180:CDS | 45.0% | |
| TTACATATGAAAGCCGCGGA+AGG | + | tig0021250:6657-6676 | None:intergenic | 45.0% | |
| !! | CATTAAATTTAAAAATAAAA+GGG | + | tig0021250:6225-6244 | None:intergenic | 5.0% |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | tig0021250:4480-4499 | Msa1389180:intron | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | - | tig0021250:4490-4509 | Msa1389180:intron | 50.0% |
| ! | GTGAGTGTTTGAGGCAAACC+TGG | + | tig0021250:4683-4702 | None:intergenic | 50.0% |
| TGCTGATGACATGTGCCCTA+CGG | - | tig0021250:4748-4767 | Msa1389180:intron | 50.0% | |
| ! | TTCTTTGGTTGGTTGGGTGC+TGG | + | tig0021250:5341-5360 | None:intergenic | 50.0% |
| GCACCCAACCAACCAAAGAA+AGG | - | tig0021250:5341-5360 | Msa1389180:intron | 50.0% | |
| AGGGATGGCCTTTCTTTGGT+TGG | + | tig0021250:5352-5371 | None:intergenic | 50.0% | |
| ! | TCAGTCAAGGGTTGGCAACT+GGG | + | tig0021250:5601-5620 | None:intergenic | 50.0% |
| ! | ATCAGTCAAGGGTTGGCAAC+TGG | + | tig0021250:5602-5621 | None:intergenic | 50.0% |
| GTGCACAATCAGTCAAGGGT+TGG | + | tig0021250:5609-5628 | None:intergenic | 50.0% | |
| AATGCTAGCAGACATGCAGC+AGG | - | tig0021250:5933-5952 | Msa1389180:intron | 50.0% | |
| GTGTTCTTGCAGATGGCTAC+TGG | - | tig0021250:6619-6638 | Msa1389180:CDS | 50.0% | |
| TATGAAAGCCGCGGAAGGTA+GGG | + | tig0021250:6652-6671 | None:intergenic | 50.0% | |
| ATATGAAAGCCGCGGAAGGT+AGG | + | tig0021250:6653-6672 | None:intergenic | 50.0% | |
| GGGCTTACATATGAAAGCCG+CGG | + | tig0021250:6661-6680 | None:intergenic | 50.0% | |
| AAAGACACGCCGTAACGAGG+AGG | - | tig0021250:5305-5324 | Msa1389180:intron | 55.0% | |
| GTGCAGGGATGGCCTTTCTT+TGG | + | tig0021250:5356-5375 | None:intergenic | 55.0% | |
| AGCCGACATCGTTGGGTGAT+GGG | + | tig0021250:5384-5403 | None:intergenic | 55.0% | |
| GTGTTGGAGCCGACATCGTT+GGG | + | tig0021250:5391-5410 | None:intergenic | 55.0% | |
| TGTGTTGGAGCCGACATCGT+TGG | + | tig0021250:5392-5411 | None:intergenic | 55.0% | |
| CGCAATGAGCGGATCTTCTC+TGG | + | tig0021250:5515-5534 | None:intergenic | 55.0% | |
| ! | GGTTTTTCCCCTACCTTCCG+CGG | - | tig0021250:6641-6660 | Msa1389180:CDS | 55.0% |
| ATGAAAGCCGCGGAAGGTAG+GGG | + | tig0021250:6651-6670 | None:intergenic | 55.0% | |
| ACACGCCGTAACGAGGAGGA+CGG | - | tig0021250:5309-5328 | Msa1389180:intron | 60.0% | |
| GTTGGCCGTCCTCCTCGTTA+CGG | + | tig0021250:5317-5336 | None:intergenic | 60.0% | |
| !! | GGTTGGTTGGGTGCTGGAGT+TGG | + | tig0021250:5335-5354 | None:intergenic | 60.0% |
| !! | CGACATCGTTGGGTGATGGG+GGG | + | tig0021250:5381-5400 | None:intergenic | 60.0% |
| ! | CCGACATCGTTGGGTGATGG+GGG | + | tig0021250:5382-5401 | None:intergenic | 60.0% |
| CCCCCATCACCCAACGATGT+CGG | - | tig0021250:5379-5398 | Msa1389180:intron | 60.0% | |
| GCCGACATCGTTGGGTGATG+GGG | + | tig0021250:5383-5402 | None:intergenic | 60.0% | |
| GAGCCGACATCGTTGGGTGA+TGG | + | tig0021250:5385-5404 | None:intergenic | 60.0% | |
| GATGGGGGGTAGTGCAGGGA+TGG | + | tig0021250:5367-5386 | None:intergenic | 65.0% | |
| !! | GGGTGATGGGGGGTAGTGCA+GGG | + | tig0021250:5371-5390 | None:intergenic | 65.0% |
| !! | TGGGTGATGGGGGGTAGTGC+AGG | + | tig0021250:5372-5391 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021250 | gene | 3930 | 6719 | 3930 | ID=Msa1389180;Name=Msa1389180 |
| tig0021250 | mRNA | 3930 | 6719 | 3930 | ID=Msa1389180-mRNA-1;Parent=Msa1389180;Name=Msa1389180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|280 |
| tig0021250 | exon | 5966 | 6719 | 5966 | ID=Msa1389180-mRNA-1:exon:11514;Parent=Msa1389180-mRNA-1 |
| tig0021250 | exon | 3930 | 4018 | 3930 | ID=Msa1389180-mRNA-1:exon:11513;Parent=Msa1389180-mRNA-1 |
| tig0021250 | CDS | 5966 | 6719 | 5966 | ID=Msa1389180-mRNA-1:cds;Parent=Msa1389180-mRNA-1 |
| tig0021250 | CDS | 3930 | 4018 | 3930 | ID=Msa1389180-mRNA-1:cds;Parent=Msa1389180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
