Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389750 | RZB88681.1 | 61.923 | 260 | 59 | 6 | 1 | 258 | 1 | 222 | 1.29e-72 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389750 | sp|Q9LTE3|HIP12_ARATH | 55.072 | 69 | 30 | 1 | 1 | 69 | 1 | 68 | 3.65e-17 | 78.2 |
| Msa1389750 | sp|Q9LTE3|HIP12_ARATH | 41.791 | 134 | 57 | 5 | 123 | 256 | 4 | 116 | 1.08e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389750 | A0A445IRG9 | 61.923 | 260 | 59 | 6 | 1 | 258 | 1 | 222 | 6.17e-73 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038770 | Msa1389750 | 0.814039 | 1.887546e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389750 | MtrunA17_Chr1g0202561 | 94.891 | 137 | 7 | 0 | 122 | 258 | 3 | 139 | 7.28e-72 | 216 |
| Msa1389750 | MtrunA17_Chr1g0202561 | 75.000 | 128 | 26 | 4 | 1 | 123 | 1 | 127 | 3.05e-41 | 138 |
| Msa1389750 | MtrunA17_Chr1g0202541 | 86.232 | 138 | 14 | 3 | 122 | 258 | 3 | 136 | 1.35e-61 | 190 |
| Msa1389750 | MtrunA17_Chr1g0202541 | 88.618 | 123 | 12 | 2 | 1 | 121 | 1 | 123 | 1.66e-55 | 174 |
| Msa1389750 | MtrunA17_Chr1g0202581 | 90.351 | 114 | 11 | 0 | 1 | 114 | 1 | 114 | 1.59e-51 | 164 |
| Msa1389750 | MtrunA17_Chr1g0202581 | 65.942 | 138 | 38 | 4 | 122 | 258 | 3 | 132 | 4.38e-47 | 153 |
| Msa1389750 | MtrunA17_Chr1g0204291 | 86.777 | 121 | 14 | 1 | 1 | 121 | 1 | 119 | 5.14e-50 | 160 |
| Msa1389750 | MtrunA17_Chr1g0204291 | 69.565 | 138 | 33 | 4 | 122 | 258 | 3 | 132 | 2.88e-45 | 148 |
| Msa1389750 | MtrunA17_Chr6g0469571 | 58.088 | 136 | 42 | 3 | 122 | 257 | 3 | 123 | 2.28e-36 | 125 |
| Msa1389750 | MtrunA17_Chr6g0469571 | 77.143 | 70 | 15 | 1 | 1 | 69 | 1 | 70 | 5.06e-29 | 106 |
| Msa1389750 | MtrunA17_Chr6g0469551 | 57.353 | 136 | 43 | 3 | 122 | 257 | 3 | 123 | 6.08e-36 | 124 |
| Msa1389750 | MtrunA17_Chr6g0469551 | 75.714 | 70 | 16 | 1 | 1 | 69 | 1 | 70 | 1.35e-28 | 105 |
| Msa1389750 | MtrunA17_Chr6g0469591 | 57.353 | 136 | 43 | 3 | 122 | 257 | 3 | 123 | 1.11e-34 | 121 |
| Msa1389750 | MtrunA17_Chr6g0469591 | 74.286 | 70 | 17 | 1 | 1 | 69 | 1 | 70 | 4.81e-27 | 101 |
| Msa1389750 | MtrunA17_Chr6g0469681 | 54.412 | 136 | 50 | 3 | 122 | 257 | 3 | 126 | 1.22e-32 | 115 |
| Msa1389750 | MtrunA17_Chr6g0469681 | 68.571 | 70 | 21 | 1 | 1 | 69 | 1 | 70 | 6.95e-26 | 98.6 |
| Msa1389750 | MtrunA17_Chr6g0469651 | 51.429 | 140 | 54 | 2 | 122 | 257 | 3 | 132 | 9.18e-31 | 111 |
| Msa1389750 | MtrunA17_Chr6g0469651 | 75.714 | 70 | 16 | 1 | 1 | 69 | 1 | 70 | 3.80e-27 | 102 |
| Msa1389750 | MtrunA17_Chr6g0469671 | 75.000 | 68 | 17 | 0 | 122 | 189 | 3 | 70 | 1.38e-30 | 110 |
| Msa1389750 | MtrunA17_Chr6g0469671 | 70.000 | 70 | 20 | 1 | 1 | 69 | 1 | 70 | 9.94e-28 | 102 |
| Msa1389750 | MtrunA17_Chr8g0387471 | 48.921 | 139 | 53 | 4 | 122 | 257 | 3 | 126 | 2.39e-29 | 107 |
| Msa1389750 | MtrunA17_Chr8g0387471 | 67.606 | 71 | 22 | 1 | 1 | 70 | 1 | 71 | 3.41e-24 | 94.0 |
| Msa1389750 | MtrunA17_Chr7g0233191 | 49.593 | 123 | 44 | 3 | 122 | 242 | 3 | 109 | 4.01e-29 | 106 |
| Msa1389750 | MtrunA17_Chr7g0233191 | 46.341 | 123 | 47 | 4 | 1 | 119 | 1 | 108 | 5.37e-25 | 95.5 |
| Msa1389750 | MtrunA17_Chr7g0233201 | 47.967 | 123 | 46 | 3 | 122 | 242 | 3 | 109 | 2.29e-28 | 104 |
| Msa1389750 | MtrunA17_Chr7g0233201 | 44.715 | 123 | 49 | 4 | 1 | 119 | 1 | 108 | 3.09e-24 | 93.6 |
| Msa1389750 | MtrunA17_Chr1g0202501 | 52.206 | 136 | 56 | 2 | 122 | 257 | 3 | 129 | 2.59e-28 | 105 |
| Msa1389750 | MtrunA17_Chr1g0202501 | 53.279 | 122 | 53 | 2 | 1 | 121 | 1 | 119 | 7.79e-23 | 90.5 |
| Msa1389750 | MtrunA17_Chr7g0233231 | 46.281 | 121 | 49 | 2 | 122 | 242 | 3 | 107 | 3.33e-28 | 103 |
| Msa1389750 | MtrunA17_Chr7g0233231 | 44.167 | 120 | 53 | 2 | 1 | 119 | 1 | 107 | 1.28e-23 | 92.0 |
| Msa1389750 | MtrunA17_Chr7g0233251 | 47.244 | 127 | 48 | 4 | 122 | 246 | 3 | 112 | 4.26e-28 | 103 |
| Msa1389750 | MtrunA17_Chr7g0233251 | 44.094 | 127 | 52 | 4 | 1 | 123 | 1 | 112 | 4.48e-24 | 93.2 |
| Msa1389750 | MtrunA17_Chr7g0233211 | 47.154 | 123 | 47 | 3 | 122 | 242 | 3 | 109 | 1.03e-27 | 102 |
| Msa1389750 | MtrunA17_Chr7g0233211 | 56.098 | 82 | 35 | 1 | 1 | 81 | 1 | 82 | 3.15e-23 | 90.9 |
| Msa1389750 | MtrunA17_Chr7g0233181 | 63.514 | 74 | 27 | 0 | 122 | 195 | 3 | 76 | 2.40e-27 | 101 |
| Msa1389750 | MtrunA17_Chr7g0233181 | 59.211 | 76 | 30 | 1 | 1 | 75 | 1 | 76 | 4.74e-24 | 93.2 |
| Msa1389750 | MtrunA17_Chr6g0469541 | 49.167 | 120 | 42 | 3 | 122 | 241 | 3 | 103 | 4.96e-27 | 100 |
| Msa1389750 | MtrunA17_Chr6g0469541 | 57.895 | 76 | 31 | 1 | 1 | 75 | 1 | 76 | 7.59e-23 | 90.1 |
| Msa1389750 | MtrunA17_Chr7g0248671 | 54.545 | 66 | 30 | 0 | 122 | 187 | 3 | 68 | 2.86e-19 | 82.4 |
| Msa1389750 | MtrunA17_Chr7g0248671 | 57.353 | 68 | 28 | 1 | 1 | 67 | 1 | 68 | 5.64e-17 | 76.3 |
| Msa1389750 | MtrunA17_Chr8g0348361 | 59.574 | 47 | 19 | 0 | 141 | 187 | 22 | 68 | 2.93e-13 | 65.5 |
| Msa1389750 | MtrunA17_Chr3g0120541 | 42.683 | 82 | 42 | 4 | 120 | 196 | 3 | 84 | 5.60e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389750 | AT1G01490.4 | 43.878 | 98 | 54 | 1 | 93 | 189 | 1 | 98 | 3.50e-18 | 80.9 |
| Msa1389750 | AT1G01490.4 | 55.072 | 69 | 29 | 2 | 3 | 69 | 30 | 98 | 3.98e-14 | 69.7 |
| Msa1389750 | AT5G52740.1 | 55.072 | 69 | 30 | 1 | 1 | 69 | 1 | 68 | 3.71e-18 | 78.2 |
| Msa1389750 | AT5G52740.1 | 41.791 | 134 | 57 | 5 | 123 | 256 | 4 | 116 | 1.09e-16 | 74.3 |
| Msa1389750 | AT1G01490.1 | 56.522 | 69 | 29 | 1 | 122 | 189 | 3 | 71 | 5.09e-18 | 79.7 |
| Msa1389750 | AT1G01490.1 | 56.338 | 71 | 29 | 2 | 1 | 69 | 1 | 71 | 8.52e-16 | 73.6 |
| Msa1389750 | AT1G01490.2 | 56.522 | 69 | 29 | 1 | 122 | 189 | 3 | 71 | 5.09e-18 | 79.7 |
| Msa1389750 | AT1G01490.2 | 56.338 | 71 | 29 | 2 | 1 | 69 | 1 | 71 | 8.52e-16 | 73.6 |
| Msa1389750 | AT5G52760.1 | 42.500 | 120 | 52 | 4 | 2 | 119 | 4 | 108 | 2.46e-17 | 76.3 |
| Msa1389750 | AT5G52760.1 | 38.849 | 139 | 62 | 6 | 124 | 258 | 7 | 126 | 3.97e-17 | 75.9 |
| Msa1389750 | AT5G52750.1 | 33.333 | 141 | 84 | 3 | 122 | 258 | 5 | 139 | 4.34e-13 | 65.5 |
| Msa1389750 | AT5G52750.1 | 50.769 | 65 | 31 | 1 | 3 | 66 | 5 | 69 | 7.82e-13 | 64.7 |
Find 50 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCAGTCTCTGGCCTTTC+AGG | 0.149438 | tig0021300:+36364 | Msa1389750:CDS |
| AAGGCAGTCTCTGGCCTTTC+AGG | 0.156873 | tig0021300:+32776 | Msa1389750:CDS |
| CTTACGGCACTGTTGTAATA+AGG | 0.295936 | tig0021300:-36979 | None:intergenic |
| AAAGAAAGATGAACCTAAAA+AGG | 0.304067 | tig0021300:+36837 | Msa1389750:CDS |
| ATTAATCCTTTCGTGCTCTA+TGG | 0.313770 | tig0021300:+33218 | Msa1389750:CDS |
| TTGATGCAAATTGTAATAGA+AGG | 0.314402 | tig0021300:-32457 | None:intergenic |
| GACAAGAAAATGACCTTAAT+AGG | 0.340701 | tig0021300:+36730 | Msa1389750:CDS |
| AACTAACCTTCATATTGTTA+TGG | 0.351439 | tig0021300:-32508 | None:intergenic |
| TGGATCAATATCTCCTATTA+AGG | 0.357566 | tig0021300:-36743 | None:intergenic |
| ATTCATCTGATGATTATAAT+AGG | 0.369814 | tig0021300:-33252 | None:intergenic |
| ACAGAAAGTTGTGTTAAAGT+TGG | 0.398742 | tig0021300:+36306 | Msa1389750:intron |
| ACAGAAAATTGTGCTAAAGT+TGG | 0.399453 | tig0021300:+32718 | Msa1389750:intron |
| ACGAAAGGATTAATTATCAT+TGG | 0.419156 | tig0021300:-33209 | None:intergenic |
| AGCTTAGCCACTACAAGTAC+TGG | 0.428511 | tig0021300:-33077 | None:intergenic |
| AGGATCCTCTTCAACGCTTA+CGG | 0.439566 | tig0021300:-36995 | None:intergenic |
| TAGATGATGACACAACCATT+AGG | 0.444909 | tig0021300:-37015 | None:intergenic |
| TGGGTCGGTATCTCCTACTA+AGG | 0.446407 | tig0021300:-33057 | None:intergenic |
| AGGGAAAGAATGAAGAGCTA+GGG | 0.448627 | tig0021300:-32437 | None:intergenic |
| GACAAGAAAATGACCTTAGT+AGG | 0.452020 | tig0021300:+33044 | Msa1389750:CDS |
| AAGGGAAAGAATGAAGAGCT+AGG | 0.471515 | tig0021300:-32438 | None:intergenic |
| AAAGCTATGAAGGCAGTCTC+TGG | 0.474866 | tig0021300:+32767 | Msa1389750:CDS |
| AAAGCTATGAAGGCAGTCTC+TGG | 0.474866 | tig0021300:+36355 | Msa1389750:CDS |
| TTCAGTTGGACCAGCTAAAG+AGG | 0.475094 | tig0021300:+36813 | Msa1389750:CDS |
| ATCTGATGATTATAATAAGC+AGG | 0.479465 | tig0021300:-36940 | None:intergenic |
| TTCAGTTGGACCAGCTAAAG+TGG | 0.482641 | tig0021300:+33127 | Msa1389750:CDS |
| GGGAAAGAATGAAGAGCTAG+GGG | 0.487866 | tig0021300:-32436 | None:intergenic |
| GCACGGTAGTATGAATTGTA+TGG | 0.489699 | tig0021300:-33275 | None:intergenic |
| AGCTTAGCCACTACTCGTAC+TGG | 0.494190 | tig0021300:-36763 | None:intergenic |
| ATTGAAGTGGTAATAGGAAG+AGG | 0.495528 | tig0021300:-32412 | None:intergenic |
| CATGCTGAAATACTTTCAGT+TGG | 0.503143 | tig0021300:+36799 | Msa1389750:CDS |
| TACGAGTAGTGGCTAAGCTA+AGG | 0.517254 | tig0021300:+36767 | Msa1389750:CDS |
| TGATGATTATAATAGGTAGT+AGG | 0.521368 | tig0021300:-33245 | None:intergenic |
| CAGTGCCGTAAGCGTTGAAG+AGG | 0.540164 | tig0021300:+36990 | Msa1389750:CDS |
| CATGCAGAAATACTTTCAGT+TGG | 0.545738 | tig0021300:+33113 | Msa1389750:CDS |
| TACTTGTAGTGGCTAAGCTA+AGG | 0.547972 | tig0021300:+33081 | Msa1389750:CDS |
| CATTTGATTCAATACCTGAA+AGG | 0.552371 | tig0021300:-36378 | None:intergenic |
| TTGTAATAAGGATTGTATTG+TGG | 0.559757 | tig0021300:-36967 | None:intergenic |
| GGTGTACCATAGAAAATGAA+AGG | 0.560041 | tig0021300:-36919 | None:intergenic |
| TGATGCAAATTGTAATAGAA+GGG | 0.565633 | tig0021300:-32456 | None:intergenic |
| ATAGTGTTGATTATAATATG+AGG | 0.565645 | tig0021300:+37144 | Msa1389750:three_prime_UTR |
| TAACCTTCATATTGTTATGG+AGG | 0.572622 | tig0021300:-32505 | None:intergenic |
| TAGCCTCCATAACAATATGA+AGG | 0.575947 | tig0021300:+32502 | Msa1389750:exon |
| TTATGGAGGCTACTGAGCTA+AGG | 0.584571 | tig0021300:-32491 | None:intergenic |
| AGCGTTGAAGAGGATCCTAA+TGG | 0.597342 | tig0021300:+37000 | Msa1389750:CDS |
| GGTGTACCATAGAGCACGAA+AGG | 0.612408 | tig0021300:-33224 | None:intergenic |
| TATTGATCCAGTACGAGTAG+TGG | 0.621361 | tig0021300:+36756 | Msa1389750:CDS |
| GCTTAGCCACTACAAGTACT+GGG | 0.632143 | tig0021300:-33076 | None:intergenic |
| AGCCACTACAAGTACTGGGT+CGG | 0.650008 | tig0021300:-33072 | None:intergenic |
| TACCGACCCAGTACTTGTAG+TGG | 0.655849 | tig0021300:+33070 | Msa1389750:CDS |
| GGAAAGAATGAAGAGCTAGG+GGG | 0.682663 | tig0021300:-32435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTTTATATTATTTT+TGG | + | tig0021300:37036-37055 | Msa1389750:exon | 0.0% |
| !!! | AGAAAAATAATTATTTTTTG+AGG | + | tig0021300:33379-33398 | Msa1389750:intron | 10.0% |
| !!! | TTTTTTTAAATAAGCTAAAA+TGG | + | tig0021300:33727-33746 | Msa1389750:intron | 10.0% |
| !! | GATAATTCTATTTATTAATT+AGG | - | tig0021300:34684-34703 | None:intergenic | 10.0% |
| !! | CTAAAATTTAATACATATAT+GGG | - | tig0021300:36184-36203 | None:intergenic | 10.0% |
| !! | ACTAAAATTTAATACATATA+TGG | - | tig0021300:36185-36204 | None:intergenic | 10.0% |
| !!! | AGTAACATATTTTTTTTTTA+AGG | - | tig0021300:37216-37235 | None:intergenic | 10.0% |
| !!! | TTGTATTTTAATAATTTTGC+AGG | + | tig0021300:32996-33015 | Msa1389750:intron | 15.0% |
| !!! | TGTATTTTAATAATTTTGCA+GGG | + | tig0021300:32997-33016 | Msa1389750:intron | 15.0% |
| !!! | TTCTTTTTATCATCTTTTTT+AGG | - | tig0021300:33167-33186 | None:intergenic | 15.0% |
| !! | TAAAAAAGATGATAAAAAGA+AGG | + | tig0021300:33166-33185 | Msa1389750:CDS | 15.0% |
| !! | TTTCTACAATTTAATTGTTA+TGG | - | tig0021300:34011-34030 | None:intergenic | 15.0% |
| !!! | AATGAATTTTTTGAGATTTT+GGG | - | tig0021300:34889-34908 | None:intergenic | 15.0% |
| !!! | AAATGAATTTTTTGAGATTT+TGG | - | tig0021300:34890-34909 | None:intergenic | 15.0% |
| !! | TCAAAAAATTCATTTCTAAT+AGG | + | tig0021300:34895-34914 | Msa1389750:intron | 15.0% |
| !! | TTTAAAAATTTCAAAGTTGA+AGG | - | tig0021300:35277-35296 | None:intergenic | 15.0% |
| !!! | TAAACATGTCTAATTTTTTA+TGG | - | tig0021300:35339-35358 | None:intergenic | 15.0% |
| !!! | AAGTAAAGATTTTATTTTAG+GGG | - | tig0021300:35698-35717 | None:intergenic | 15.0% |
| !!! | GAAGTAAAGATTTTATTTTA+GGG | - | tig0021300:35699-35718 | None:intergenic | 15.0% |
| !!! | AGAAGTAAAGATTTTATTTT+AGG | - | tig0021300:35700-35719 | None:intergenic | 15.0% |
| !!! | AAAATATCAAATTTGAAATC+TGG | - | tig0021300:36522-36541 | None:intergenic | 15.0% |
| !!! | AAAAAATCTACTTGTTAGAA+CGG | - | tig0021300:32693-32712 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTTTACCTGAA+AGG | - | tig0021300:32793-32812 | None:intergenic | 20.0% |
| !!! | GTATTTTAATAATTTTGCAG+GGG | + | tig0021300:32998-33017 | Msa1389750:intron | 20.0% |
| !! | ATTCATCTGATGATTATAAT+AGG | - | tig0021300:33255-33274 | None:intergenic | 20.0% |
| !!! | TCATTATATACTTTTTTGAG+AGG | + | tig0021300:33416-33435 | Msa1389750:intron | 20.0% |
| !!! | CATTATATACTTTTTTGAGA+GGG | + | tig0021300:33417-33436 | Msa1389750:intron | 20.0% |
| !! | TCTACTAATGTATTAAATTG+TGG | - | tig0021300:33572-33591 | None:intergenic | 20.0% |
| !! | AACATAAATGCACAATTTAT+TGG | - | tig0021300:33927-33946 | None:intergenic | 20.0% |
| !!! | TTGAACAAATTATCTTTTGT+TGG | + | tig0021300:34263-34282 | Msa1389750:intron | 20.0% |
| !!! | AAAATTAAGAGCATTATTGA+CGG | + | tig0021300:34400-34419 | Msa1389750:intron | 20.0% |
| !!! | AAATTCCTTTTTATTTTGGT+AGG | - | tig0021300:34655-34674 | None:intergenic | 20.0% |
| !!! | ATGGAAATTCCTTTTTATTT+TGG | - | tig0021300:34659-34678 | None:intergenic | 20.0% |
| !! | TCTATTTATTAATTAGGTGA+TGG | - | tig0021300:34678-34697 | None:intergenic | 20.0% |
| !! | ATATCAAATTCAACTTCTAT+TGG | - | tig0021300:34816-34835 | None:intergenic | 20.0% |
| !! | ATTTGATATGTTTGATTCAT+AGG | + | tig0021300:34827-34846 | Msa1389750:intron | 20.0% |
| !!! | ATGAATTTTTTGAGATTTTG+GGG | - | tig0021300:34888-34907 | None:intergenic | 20.0% |
| !! | TCAAATAATATGTCATTGAT+AGG | - | tig0021300:35065-35084 | None:intergenic | 20.0% |
| !!! | ATTTATGTAGACAAATCTTT+TGG | - | tig0021300:35231-35250 | None:intergenic | 20.0% |
| !!! | ATAATATCCATTTTTTTACG+AGG | + | tig0021300:35578-35597 | Msa1389750:intron | 20.0% |
| !!! | GTGGTTATATAAGTTATTTT+GGG | - | tig0021300:35636-35655 | None:intergenic | 20.0% |
| !!! | TGTGGTTATATAAGTTATTT+TGG | - | tig0021300:35637-35656 | None:intergenic | 20.0% |
| !! | TTAATTTATTATCTTCGTTG+TGG | - | tig0021300:35655-35674 | None:intergenic | 20.0% |
| !! | ATAAAATCTTTACTTCTTGT+AGG | + | tig0021300:35703-35722 | Msa1389750:intron | 20.0% |
| !!! | TTCTTTTTATCATCCTTTTT+AGG | - | tig0021300:36853-36872 | None:intergenic | 20.0% |
| !! | TAAAAAGGATGATAAAAAGA+AGG | + | tig0021300:36852-36871 | Msa1389750:CDS | 20.0% |
| !!! | ATAGTGTTGATTATAATATG+AGG | + | tig0021300:37144-37163 | Msa1389750:three_prime_UTR | 20.0% |
| ! | TGATGCAAATTGTAATAGAA+GGG | - | tig0021300:32459-32478 | None:intergenic | 25.0% |
| ! | TTGATGCAAATTGTAATAGA+AGG | - | tig0021300:32460-32479 | None:intergenic | 25.0% |
| ! | AACTAACCTTCATATTGTTA+TGG | - | tig0021300:32511-32530 | None:intergenic | 25.0% |
| !!! | TAAAAGAGTGGTTTTAATCA+AGG | - | tig0021300:32543-32562 | None:intergenic | 25.0% |
| ! | TCATACTTTAGCTATGATAT+AGG | - | tig0021300:32569-32588 | None:intergenic | 25.0% |
| ! | TATCATAGCTAAAGTATGAT+TGG | + | tig0021300:32570-32589 | Msa1389750:intron | 25.0% |
| ! | TTGAAATTGTGCATAAGAAA+AGG | - | tig0021300:32604-32623 | None:intergenic | 25.0% |
| ! | AATCAAACAAAAAGCTATGA+AGG | + | tig0021300:32757-32776 | Msa1389750:CDS | 25.0% |
| ! | ATCGAACTTAGTCTAATATA+CGG | - | tig0021300:32885-32904 | None:intergenic | 25.0% |
| !!! | ACTAAGTTCGATATTTTGAT+TGG | + | tig0021300:32893-32912 | Msa1389750:intron | 25.0% |
| !!! | AATCATTGATTCTACGAATT+TGG | - | tig0021300:32941-32960 | None:intergenic | 25.0% |
| ! | ACGAAAGGATTAATTATCAT+TGG | - | tig0021300:33212-33231 | None:intergenic | 25.0% |
| ! | TGATGATTATAATAGGTAGT+AGG | - | tig0021300:33248-33267 | None:intergenic | 25.0% |
| !! | TGTATTAAATTGTGGATTGA+TGG | - | tig0021300:33564-33583 | None:intergenic | 25.0% |
| !! | TATGGTTTTCCTTAAATATG+AGG | - | tig0021300:33647-33666 | None:intergenic | 25.0% |
| ! | TTATACAGGATATGTAAAGA+AGG | - | tig0021300:33768-33787 | None:intergenic | 25.0% |
| ! | TTCTTTACATATCCTGTATA+AGG | + | tig0021300:33767-33786 | Msa1389750:intron | 25.0% |
| ! | TAAATGCACAATTTATTGGA+TGG | - | tig0021300:33923-33942 | None:intergenic | 25.0% |
| !!! | GTAACTTTTTCAGTCAAATT+TGG | - | tig0021300:34161-34180 | None:intergenic | 25.0% |
| !!! | AAGATAATTTGTTCAAACGA+GGG | - | tig0021300:34259-34278 | None:intergenic | 25.0% |
| !!! | AAAGATAATTTGTTCAAACG+AGG | - | tig0021300:34260-34279 | None:intergenic | 25.0% |
| !! | ACAAATTATCTTTTGTTGGA+AGG | + | tig0021300:34267-34286 | Msa1389750:intron | 25.0% |
| !! | TAAAAGTCAATCTTTTTGTG+TGG | - | tig0021300:34310-34329 | None:intergenic | 25.0% |
| !!! | TATTTTTATGCCATACTACA+GGG | + | tig0021300:34336-34355 | Msa1389750:intron | 25.0% |
| !!! | AATTCAACTTCTATTGGTTT+GGG | - | tig0021300:34810-34829 | None:intergenic | 25.0% |
| !! | AAATTCAACTTCTATTGGTT+TGG | - | tig0021300:34811-34830 | None:intergenic | 25.0% |
| !!! | ACATGTCTAATTTTTTATGG+AGG | - | tig0021300:35336-35355 | None:intergenic | 25.0% |
| ! | ATAAACTAAAACCTCATTCA+AGG | + | tig0021300:35538-35557 | Msa1389750:intron | 25.0% |
| ! | TTACAAAATTTCCTTGAATG+AGG | - | tig0021300:35552-35571 | None:intergenic | 25.0% |
| !!! | TTTCTAATCTCTAGTTTGTT+TGG | - | tig0021300:35749-35768 | None:intergenic | 25.0% |
| ! | AACAAACTAGAGATTAGAAA+AGG | + | tig0021300:35749-35768 | Msa1389750:intron | 25.0% |
| !! | TTTGAGGCTTATTTATAGTA+AGG | - | tig0021300:35884-35903 | None:intergenic | 25.0% |
| ! | TGATGCAAACTTTAATAGAA+GGG | - | tig0021300:35957-35976 | None:intergenic | 25.0% |
| ! | TTGATGCAAACTTTAATAGA+AGG | - | tig0021300:35958-35977 | None:intergenic | 25.0% |
| ! | TGATGAAAAAAGTAAAAGAG+TGG | - | tig0021300:36057-36076 | None:intergenic | 25.0% |
| ! | CATCATAGCTAAAATATGTT+TGG | + | tig0021300:36072-36091 | Msa1389750:intron | 25.0% |
| ! | TTTAAATGTTGCATAAGGTA+AGG | - | tig0021300:36110-36129 | None:intergenic | 25.0% |
| !!! | CTGAATTTTAAGTTCTTCTT+TGG | + | tig0021300:36131-36150 | Msa1389750:intron | 25.0% |
| ! | AGAAAAATCAAGTAGTTGTT+AGG | - | tig0021300:36283-36302 | None:intergenic | 25.0% |
| ! | GATCATGTATCATCAATAAT+CGG | + | tig0021300:36448-36467 | Msa1389750:intron | 25.0% |
| ! | ATCATGTATCATCAATAATC+GGG | + | tig0021300:36449-36468 | Msa1389750:intron | 25.0% |
| ! | AATCCAAATACTCCAAAATT+TGG | + | tig0021300:36486-36505 | Msa1389750:intron | 25.0% |
| ! | TGTATTTGTAATATTGTTGC+AGG | + | tig0021300:36679-36698 | Msa1389750:intron | 25.0% |
| ! | GTATTTGTAATATTGTTGCA+GGG | + | tig0021300:36680-36699 | Msa1389750:intron | 25.0% |
| ! | TATTTGTAATATTGTTGCAG+GGG | + | tig0021300:36681-36700 | Msa1389750:intron | 25.0% |
| ! | AAAGAAAGATGAACCTAAAA+AGG | + | tig0021300:33151-33170 | Msa1389750:CDS | 25.0% |
| !! | ATTGATCCTTTCATTTTCTA+TGG | + | tig0021300:36913-36932 | Msa1389750:CDS | 25.0% |
| ! | ATCTGATGATTATAATAAGC+AGG | - | tig0021300:36943-36962 | None:intergenic | 25.0% |
| ! | TTGTAATAAGGATTGTATTG+TGG | - | tig0021300:36970-36989 | None:intergenic | 25.0% |
| ! | AATCCGAAAAATAATCATTG+TGG | + | tig0021300:37067-37086 | Msa1389750:three_prime_UTR | 25.0% |
| !!! | CAACCACAATGATTATTTTT+CGG | - | tig0021300:37073-37092 | None:intergenic | 25.0% |
| TAACCTTCATATTGTTATGG+AGG | - | tig0021300:32508-32527 | None:intergenic | 30.0% | |
| TGATATAGGAGATAAAAGAG+TGG | - | tig0021300:32555-32574 | None:intergenic | 30.0% | |
| ACAGAAAATTGTGCTAAAGT+TGG | + | tig0021300:32718-32737 | Msa1389750:intron | 30.0% | |
| CGCAAATATCCTCATATTTA+AGG | + | tig0021300:33635-33654 | Msa1389750:intron | 30.0% | |
| CGAGGTTGTATATAGTATTA+TGG | - | tig0021300:33665-33684 | None:intergenic | 30.0% | |
| CTACAAAAGGATGAAAAAGA+TGG | + | tig0021300:33690-33709 | Msa1389750:intron | 30.0% | |
| ACACTAGAAAACAATGAGAA+AGG | + | tig0021300:33843-33862 | Msa1389750:intron | 30.0% | |
| !! | TTACTTTTGATTACCACATG+TGG | - | tig0021300:33878-33897 | None:intergenic | 30.0% |
| ACATGTGGTAATCAAAAGTA+AGG | + | tig0021300:33877-33896 | Msa1389750:intron | 30.0% | |
| CATTTATGTTGTCAAACAAG+TGG | + | tig0021300:33937-33956 | Msa1389750:intron | 30.0% | |
| !! | AGATAATTTGTTCAAACGAG+GGG | - | tig0021300:34258-34277 | None:intergenic | 30.0% |
| ! | AATTATCTTTTGTTGGAAGG+CGG | + | tig0021300:34270-34289 | Msa1389750:intron | 30.0% |
| !!! | CTATTTTTATGCCATACTAC+AGG | + | tig0021300:34335-34354 | Msa1389750:intron | 30.0% |
| !! | AAGGAATAGCTTTGAAAGAT+AGG | - | tig0021300:34620-34639 | None:intergenic | 30.0% |
| !!! | TTTTATTTTGGTAGGATCCT+TGG | - | tig0021300:34647-34666 | None:intergenic | 30.0% |
| AGGATCCTACCAAAATAAAA+AGG | + | tig0021300:34647-34666 | Msa1389750:intron | 30.0% | |
| TCAAAAAATCGATCACAAGA+TGG | - | tig0021300:34769-34788 | None:intergenic | 30.0% | |
| TGATATGTTTGATTCATAGG+CGG | + | tig0021300:34830-34849 | Msa1389750:intron | 30.0% | |
| !!! | ACAAACGATTTTGAGTTCAT+AGG | - | tig0021300:35016-35035 | None:intergenic | 30.0% |
| ! | GTAGACAAATCTTTTGGTAA+TGG | - | tig0021300:35225-35244 | None:intergenic | 30.0% |
| !!! | ATATCCATTTTTTTACGAGG+AGG | + | tig0021300:35581-35600 | Msa1389750:intron | 30.0% |
| ATTTCCTCCTCGTAAAAAAA+TGG | - | tig0021300:35588-35607 | None:intergenic | 30.0% | |
| TTTAGGGGAATTACATAAAG+AGG | - | tig0021300:35683-35702 | None:intergenic | 30.0% | |
| !! | TACTTTGTCTTGACTTGTTT+CGG | + | tig0021300:35824-35843 | Msa1389750:intron | 30.0% |
| GGCTTATTTATAGTAAGGTA+AGG | - | tig0021300:35879-35898 | None:intergenic | 30.0% | |
| GTTGAAGTGATAATTTGAAG+AGG | - | tig0021300:35916-35935 | None:intergenic | 30.0% | |
| AACTTTAATAGAAGGGAAAG+AGG | - | tig0021300:35950-35969 | None:intergenic | 30.0% | |
| AAAAGCTTCCATAACAATGA+AGG | + | tig0021300:36001-36020 | Msa1389750:intron | 30.0% | |
| !!! | GTGGTTTTAACTTTTAACCA+GGG | - | tig0021300:36038-36057 | None:intergenic | 30.0% |
| !!! | AGTGGTTTTAACTTTTAACC+AGG | - | tig0021300:36039-36058 | None:intergenic | 30.0% |
| !! | TCAGCTTTAAATGTTGCATA+AGG | - | tig0021300:36115-36134 | None:intergenic | 30.0% |
| ACAGAAAGTTGTGTTAAAGT+TGG | + | tig0021300:36306-36325 | Msa1389750:intron | 30.0% | |
| CATTTGATTCAATACCTGAA+AGG | - | tig0021300:36381-36400 | None:intergenic | 30.0% | |
| !!! | AGTCCAAATTTTGGAGTATT+TGG | - | tig0021300:36492-36511 | None:intergenic | 30.0% |
| TGCATTGAAATCTGATTAGA+CGG | + | tig0021300:36567-36586 | Msa1389750:intron | 30.0% | |
| TCAATGAACAATTGATGCTA+CGG | - | tig0021300:36632-36651 | None:intergenic | 30.0% | |
| GACAAGAAAATGACCTTAAT+AGG | + | tig0021300:36730-36749 | Msa1389750:CDS | 30.0% | |
| TGGATCAATATCTCCTATTA+AGG | - | tig0021300:36746-36765 | None:intergenic | 30.0% | |
| ATTGAAGTGGTAATAGGAAG+AGG | - | tig0021300:32415-32434 | None:intergenic | 35.0% | |
| TAGCCTCCATAACAATATGA+AGG | + | tig0021300:32502-32521 | Msa1389750:exon | 35.0% | |
| ! | TACCAAAGTGCTTCAAATTC+AGG | - | tig0021300:32628-32647 | None:intergenic | 35.0% |
| TTGATTGGACAATTCAGATG+TGG | + | tig0021300:32908-32927 | Msa1389750:intron | 35.0% | |
| GACAAGAAAATGACCTTAGT+AGG | + | tig0021300:33044-33063 | Msa1389750:CDS | 35.0% | |
| CATGCAGAAATACTTTCAGT+TGG | + | tig0021300:33113-33132 | Msa1389750:CDS | 35.0% | |
| ! | TCTTTCTTTTCCACTTTAGC+TGG | - | tig0021300:33140-33159 | None:intergenic | 35.0% |
| ATTAATCCTTTCGTGCTCTA+TGG | + | tig0021300:33218-33237 | Msa1389750:CDS | 35.0% | |
| TATATGATGACACAGCCATT+AGG | - | tig0021300:33320-33339 | None:intergenic | 35.0% | |
| AGTTACATCATACTCAGATC+CGG | + | tig0021300:33819-33838 | Msa1389750:intron | 35.0% | |
| !! | CTCATTGTTTTCTAGTGTAC+CGG | - | tig0021300:33841-33860 | None:intergenic | 35.0% |
| TTATGTTGTCAAACAAGTGG+TGG | + | tig0021300:33940-33959 | Msa1389750:intron | 35.0% | |
| ! | TGATTGGTTAGACTTCTTCA+AGG | - | tig0021300:34127-34146 | None:intergenic | 35.0% |
| ! | TTTGGATTGTCGTTTCTGAT+TGG | - | tig0021300:34143-34162 | None:intergenic | 35.0% |
| GCAACTCAACATAACAATGT+AGG | - | tig0021300:34368-34387 | None:intergenic | 35.0% | |
| ! | TGTTGAACTCTGTTAGTTTG+CGG | - | tig0021300:34470-34489 | None:intergenic | 35.0% |
| !!! | TGATATGAAGCTTTTAGGGT+GGG | - | tig0021300:34550-34569 | None:intergenic | 35.0% |
| ! | TGGCTGATATGAAGCTTTTA+GGG | - | tig0021300:34554-34573 | None:intergenic | 35.0% |
| ! | TTAGCTTTCTGATAACGAGA+TGG | - | tig0021300:34583-34602 | None:intergenic | 35.0% |
| AAAGCTATTCCTTTCAACCA+AGG | + | tig0021300:34627-34646 | Msa1389750:intron | 35.0% | |
| CATAGTATTGTTTGTGGTGT+TGG | - | tig0021300:34732-34751 | None:intergenic | 35.0% | |
| TCAGTGCATAGTATTGTTTG+TGG | - | tig0021300:34738-34757 | None:intergenic | 35.0% | |
| ACTCATACAATTTAGTGCAG+CGG | + | tig0021300:34978-34997 | Msa1389750:intron | 35.0% | |
| ! | GGTAATGGTAGATTCAAAGT+TGG | - | tig0021300:35210-35229 | None:intergenic | 35.0% |
| ! | TTTCAAAGTTGAAGGAGCAT+TGG | - | tig0021300:35269-35288 | None:intergenic | 35.0% |
| ! | AAGTCAAGACAAAGTACTAG+TGG | - | tig0021300:35820-35839 | None:intergenic | 35.0% |
| GAAGAGGAAGTGATTATTTG+AGG | - | tig0021300:35900-35919 | None:intergenic | 35.0% | |
| ! | TTATGGAAGCTTTTGAGCTA+AGG | - | tig0021300:35995-36014 | None:intergenic | 35.0% |
| AGTGCTAACCTTCATTGTTA+TGG | - | tig0021300:36012-36031 | None:intergenic | 35.0% | |
| ! | CAAAGCACAGGTTGAAAAAT+TGG | - | tig0021300:36224-36243 | None:intergenic | 35.0% |
| !!! | ACCTGTGCTTTGTCTTTTTT+TGG | + | tig0021300:36232-36251 | Msa1389750:intron | 35.0% |
| ACCAAAAAAAGACAAAGCAC+AGG | - | tig0021300:36236-36255 | None:intergenic | 35.0% | |
| AGTCAAGCAAAAAGCTATGA+AGG | + | tig0021300:36345-36364 | Msa1389750:CDS | 35.0% | |
| ! | GGATTAGACAGTCCAAATTT+TGG | - | tig0021300:36501-36520 | None:intergenic | 35.0% |
| AACAATTGATGCTACGGATT+AGG | - | tig0021300:36626-36645 | None:intergenic | 35.0% | |
| CATGCTGAAATACTTTCAGT+TGG | + | tig0021300:36799-36818 | Msa1389750:CDS | 35.0% | |
| ! | TCTTTCTTTTCCTCTTTAGC+TGG | - | tig0021300:36826-36845 | None:intergenic | 35.0% |
| GGTGTACCATAGAAAATGAA+AGG | - | tig0021300:36922-36941 | None:intergenic | 35.0% | |
| TAGATGATGACACAACCATT+AGG | - | tig0021300:37018-37037 | None:intergenic | 35.0% | |
| AGGGAAAGAATGAAGAGCTA+GGG | - | tig0021300:32440-32459 | None:intergenic | 40.0% | |
| AAGGGAAAGAATGAAGAGCT+AGG | - | tig0021300:32441-32460 | None:intergenic | 40.0% | |
| ! | AGCCTGAATTTGAAGCACTT+TGG | + | tig0021300:32623-32642 | Msa1389750:intron | 40.0% |
| TACTTGTAGTGGCTAAGCTA+AGG | + | tig0021300:33081-33100 | Msa1389750:CDS | 40.0% | |
| GCACGGTAGTATGAATTGTA+TGG | - | tig0021300:33278-33297 | None:intergenic | 40.0% | |
| AGGATCCTCTTCAACACTTA+CGG | - | tig0021300:33300-33319 | None:intergenic | 40.0% | |
| ! | AGTGTTGAAGAGGATCCTAA+TGG | + | tig0021300:33302-33321 | Msa1389750:intron | 40.0% |
| ! | AGTGTGTCGATCATAGTATG+AGG | + | tig0021300:33510-33529 | Msa1389750:intron | 40.0% |
| ATGAGGATATTTGCGCTAAG+AGG | - | tig0021300:33630-33649 | None:intergenic | 40.0% | |
| CACTCTAACACTCCTTATAC+AGG | - | tig0021300:33782-33801 | None:intergenic | 40.0% | |
| AAGGATTTATCCACCACATG+TGG | + | tig0021300:33862-33881 | Msa1389750:intron | 40.0% | |
| !! | CTTTTGATTACCACATGTGG+TGG | - | tig0021300:33875-33894 | None:intergenic | 40.0% |
| AGTTTCTCTAATCGCAATCG+TGG | - | tig0021300:34054-34073 | None:intergenic | 40.0% | |
| GTGTGGTAATCTAGAAGATG+TGG | - | tig0021300:34202-34221 | None:intergenic | 40.0% | |
| AGCTACTTCTCAATCTTGTG+CGG | - | tig0021300:34228-34247 | None:intergenic | 40.0% | |
| !! | GTTGAACTCTGTTAGTTTGC+GGG | - | tig0021300:34469-34488 | None:intergenic | 40.0% |
| !!! | GATATGAAGCTTTTAGGGTG+GGG | - | tig0021300:34549-34568 | None:intergenic | 40.0% |
| !! | CTGATATGAAGCTTTTAGGG+TGG | - | tig0021300:34551-34570 | None:intergenic | 40.0% |
| ! | GTGGCTGATATGAAGCTTTT+AGG | - | tig0021300:34555-34574 | None:intergenic | 40.0% |
| ! | TTCTGATAACGAGATGGATG+TGG | - | tig0021300:34577-34596 | None:intergenic | 40.0% |
| !! | TGTGGTGTTGGTACATCTAT+AGG | - | tig0021300:34720-34739 | None:intergenic | 40.0% |
| TTTGATTCATAGGCGGATCT+AGG | + | tig0021300:34837-34856 | Msa1389750:intron | 40.0% | |
| GGCTAAAAATGATCGCACAA+AGG | - | tig0021300:35044-35063 | None:intergenic | 40.0% | |
| TGTCCTCATTGGTATGGTTA+GGG | - | tig0021300:35128-35147 | None:intergenic | 40.0% | |
| TTGTCCTCATTGGTATGGTT+AGG | - | tig0021300:35129-35148 | None:intergenic | 40.0% | |
| ACTTTGTCCTTCAGAAAGAG+AGG | - | tig0021300:35159-35178 | None:intergenic | 40.0% | |
| ACTTCTTGTAGGTTCAACGA+AGG | + | tig0021300:35714-35733 | Msa1389750:intron | 40.0% | |
| TTGTAGGTTCAACGAAGGAA+CGG | + | tig0021300:35719-35738 | Msa1389750:intron | 40.0% | |
| ! | AAAGTACTAGTGGTAGTGTG+TGG | - | tig0021300:35810-35829 | None:intergenic | 40.0% |
| !! | GAGTTGATGATGATAGAGGA+AGG | - | tig0021300:35854-35873 | None:intergenic | 40.0% |
| !! | GGAAGAGTTGATGATGATAG+AGG | - | tig0021300:35858-35877 | None:intergenic | 40.0% |
| ATCAATAATCGGGTCATGTG+CGG | + | tig0021300:36459-36478 | Msa1389750:intron | 40.0% | |
| TATTGATCCAGTACGAGTAG+TGG | + | tig0021300:36756-36775 | Msa1389750:CDS | 40.0% | |
| CTTACGGCACTGTTGTAATA+AGG | - | tig0021300:36982-37001 | None:intergenic | 40.0% | |
| AGGGGGATTGAAGTGGTAAT+AGG | - | tig0021300:32421-32440 | None:intergenic | 45.0% | |
| GGAAAGAATGAAGAGCTAGG+GGG | - | tig0021300:32438-32457 | None:intergenic | 45.0% | |
| GGGAAAGAATGAAGAGCTAG+GGG | - | tig0021300:32439-32458 | None:intergenic | 45.0% | |
| TTATGGAGGCTACTGAGCTA+AGG | - | tig0021300:32494-32513 | None:intergenic | 45.0% | |
| AAAGCTATGAAGGCAGTCTC+TGG | + | tig0021300:32767-32786 | Msa1389750:CDS | 45.0% | |
| GCTTAGCCACTACAAGTACT+GGG | - | tig0021300:33079-33098 | None:intergenic | 45.0% | |
| AGCTTAGCCACTACAAGTAC+TGG | - | tig0021300:33080-33099 | None:intergenic | 45.0% | |
| TTCAGTTGGACCAGCTAAAG+TGG | + | tig0021300:33127-33146 | Msa1389750:CDS | 45.0% | |
| AGGCTTGCGAGACTATGTAA+GGG | + | tig0021300:33530-33549 | Msa1389750:intron | 45.0% | |
| ! | CAACCTCGAAGTGCTACAAA+AGG | + | tig0021300:33677-33696 | Msa1389750:intron | 45.0% |
| ! | CATCCTTTTGTAGCACTTCG+AGG | - | tig0021300:33683-33702 | None:intergenic | 45.0% |
| ACTTCTCAATCTTGTGCGGA+GGG | - | tig0021300:34224-34243 | None:intergenic | 45.0% | |
| TACTTCTCAATCTTGTGCGG+AGG | - | tig0021300:34225-34244 | None:intergenic | 45.0% | |
| GCACAAGATTGAGAAGTAGC+TGG | + | tig0021300:34227-34246 | Msa1389750:intron | 45.0% | |
| TAGGTGACAACCCTGTAGTA+TGG | - | tig0021300:34349-34368 | None:intergenic | 45.0% | |
| GGGATGATGTTATCGATAGG+TGG | - | tig0021300:34449-34468 | None:intergenic | 45.0% | |
| TGCGGGATGATGTTATCGAT+AGG | - | tig0021300:34452-34471 | None:intergenic | 45.0% | |
| ! | TGATAACGAGATGGATGTGG+TGG | - | tig0021300:34574-34593 | None:intergenic | 45.0% |
| TGGTAGGATCCTTGGTTGAA+AGG | - | tig0021300:34639-34658 | None:intergenic | 45.0% | |
| ATTCATAGGCGGATCTAGGT+GGG | + | tig0021300:34841-34860 | Msa1389750:intron | 45.0% | |
| GTCCTCATTGGTATGGTTAG+GGG | - | tig0021300:35127-35146 | None:intergenic | 45.0% | |
| CACTCTTGTCCTCATTGGTA+TGG | - | tig0021300:35134-35153 | None:intergenic | 45.0% | |
| AGGTTCACTCTTGTCCTCAT+TGG | - | tig0021300:35139-35158 | None:intergenic | 45.0% | |
| GAGTGAACCTCTCTTTCTGA+AGG | + | tig0021300:35149-35168 | Msa1389750:intron | 45.0% | |
| TGTAGGTTCAACGAAGGAAC+GGG | + | tig0021300:35720-35739 | Msa1389750:intron | 45.0% | |
| AAGGGAAAGAGGAGTTAGAG+GGG | - | tig0021300:35939-35958 | None:intergenic | 45.0% | |
| GAAGGGAAAGAGGAGTTAGA+GGG | - | tig0021300:35940-35959 | None:intergenic | 45.0% | |
| AGAAGGGAAAGAGGAGTTAG+AGG | - | tig0021300:35941-35960 | None:intergenic | 45.0% | |
| TGAAGGTTAGCACTTTACCC+TGG | + | tig0021300:36018-36037 | Msa1389750:intron | 45.0% | |
| AAAGCTATGAAGGCAGTCTC+TGG | + | tig0021300:32767-32786 | Msa1389750:CDS | 45.0% | |
| AGATGTGACTTACTGCACAC+TGG | + | tig0021300:36593-36612 | Msa1389750:intron | 45.0% | |
| TACGAGTAGTGGCTAAGCTA+AGG | + | tig0021300:36767-36786 | Msa1389750:CDS | 45.0% | |
| TTCAGTTGGACCAGCTAAAG+AGG | + | tig0021300:33127-33146 | Msa1389750:CDS | 45.0% | |
| AGGATCCTCTTCAACGCTTA+CGG | - | tig0021300:36998-37017 | None:intergenic | 45.0% | |
| ! | AGCGTTGAAGAGGATCCTAA+TGG | + | tig0021300:37000-37019 | Msa1389750:CDS | 45.0% |
| AAGAGCTAGGGGGATTGAAG+TGG | - | tig0021300:32428-32447 | None:intergenic | 50.0% | |
| TGGGTCGGTATCTCCTACTA+AGG | - | tig0021300:33060-33079 | None:intergenic | 50.0% | |
| TACCGACCCAGTACTTGTAG+TGG | + | tig0021300:33070-33089 | Msa1389750:CDS | 50.0% | |
| !! | AGCCACTACAAGTACTGGGT+CGG | - | tig0021300:33075-33094 | None:intergenic | 50.0% |
| GGTGTACCATAGAGCACGAA+AGG | - | tig0021300:33227-33246 | None:intergenic | 50.0% | |
| CCTCTTCAACACTTACGGCA+CGG | - | tig0021300:33295-33314 | None:intergenic | 50.0% | |
| GAGGCTTGCGAGACTATGTA+AGG | + | tig0021300:33529-33548 | Msa1389750:intron | 50.0% | |
| GCGAGACTATGTAAGGGCTT+TGG | + | tig0021300:33536-33555 | Msa1389750:intron | 50.0% | |
| GATTCATAGGCGGATCTAGG+TGG | + | tig0021300:34840-34859 | Msa1389750:intron | 50.0% | |
| TTCATAGGCGGATCTAGGTG+GGG | + | tig0021300:34842-34861 | Msa1389750:intron | 50.0% | |
| !! | TTGAGATTTTGGGGACGCCA+TGG | - | tig0021300:34879-34898 | None:intergenic | 50.0% |
| CACCCCTAACCATACCAATG+AGG | + | tig0021300:35122-35141 | Msa1389750:intron | 50.0% | |
| GTAGGTTCAACGAAGGAACG+GGG | + | tig0021300:35721-35740 | Msa1389750:intron | 50.0% | |
| AGGGAAAGAGGAGTTAGAGG+GGG | - | tig0021300:35938-35957 | None:intergenic | 50.0% | |
| AGCTTAGCCACTACTCGTAC+TGG | - | tig0021300:36766-36785 | None:intergenic | 50.0% | |
| ! | AAGGCAGTCTCTGGCCTTTC+AGG | + | tig0021300:32776-32795 | Msa1389750:CDS | 55.0% |
| !! | CCGTGCCGTAAGTGTTGAAG+AGG | + | tig0021300:33292-33311 | Msa1389750:intron | 55.0% |
| TCAATCTTGTGCGGAGGGTG+TGG | - | tig0021300:34219-34238 | None:intergenic | 55.0% | |
| GGTGAGAGTGGTGAGGCTAT+GGG | - | tig0021300:34528-34547 | None:intergenic | 55.0% | |
| !!! | CTTTTAGGGTGGGGTGAGAG+TGG | - | tig0021300:34540-34559 | None:intergenic | 55.0% |
| ! | AAGGCAGTCTCTGGCCTTTC+AGG | + | tig0021300:32776-32795 | Msa1389750:CDS | 55.0% |
| !! | CAGTGCCGTAAGCGTTGAAG+AGG | + | tig0021300:36990-37009 | Msa1389750:CDS | 55.0% |
| AGTGGTGAGGCTATGGGCGT+GGG | - | tig0021300:34522-34541 | None:intergenic | 60.0% | |
| GGGTGAGAGTGGTGAGGCTA+TGG | - | tig0021300:34529-34548 | None:intergenic | 60.0% | |
| ATCTAGGTGGGGACTGGGGA+TGG | + | tig0021300:34853-34872 | Msa1389750:intron | 60.0% | |
| CGTGGGAGGAGAGCAGCTGA+GGG | - | tig0021300:34505-34524 | None:intergenic | 65.0% | |
| GAGTGGTGAGGCTATGGGCG+TGG | - | tig0021300:34523-34542 | None:intergenic | 65.0% | |
| AGGGTGGGGTGAGAGTGGTG+AGG | - | tig0021300:34535-34554 | None:intergenic | 65.0% | |
| AGGCGGATCTAGGTGGGGAC+TGG | + | tig0021300:34847-34866 | Msa1389750:intron | 65.0% | |
| GGCGGATCTAGGTGGGGACT+GGG | + | tig0021300:34848-34867 | Msa1389750:intron | 65.0% | |
| GCGGATCTAGGTGGGGACTG+GGG | + | tig0021300:34849-34868 | Msa1389750:intron | 65.0% | |
| GCGTGGGAGGAGAGCAGCTG+AGG | - | tig0021300:34506-34525 | None:intergenic | 70.0% | |
| GGTGAGGCTATGGGCGTGGG+AGG | - | tig0021300:34519-34538 | None:intergenic | 70.0% | |
| GTGGGGACTGGGGATGGCCA+TGG | + | tig0021300:34859-34878 | Msa1389750:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021300 | gene | 32365 | 37237 | 32365 | ID=Msa1389750;Name=Msa1389750 |
| tig0021300 | mRNA | 32365 | 37237 | 32365 | ID=Msa1389750-mRNA-1;Parent=Msa1389750;Name=Msa1389750-mRNA-1;_AED=0.20;_eAED=0.20;_QI=153|0.75|0.8|1|1|1|5|199|258 |
| tig0021300 | exon | 32365 | 32523 | 32365 | ID=Msa1389750-mRNA-1:exon:11810;Parent=Msa1389750-mRNA-1 |
| tig0021300 | exon | 32722 | 32797 | 32722 | ID=Msa1389750-mRNA-1:exon:11811;Parent=Msa1389750-mRNA-1 |
| tig0021300 | exon | 33018 | 33298 | 33018 | ID=Msa1389750-mRNA-1:exon:11812;Parent=Msa1389750-mRNA-1 |
| tig0021300 | exon | 36310 | 36385 | 36310 | ID=Msa1389750-mRNA-1:exon:11813;Parent=Msa1389750-mRNA-1 |
| tig0021300 | exon | 36701 | 37237 | 36701 | ID=Msa1389750-mRNA-1:exon:11814;Parent=Msa1389750-mRNA-1 |
| tig0021300 | five_prime_UTR | 32365 | 32517 | 32365 | ID=Msa1389750-mRNA-1:five_prime_utr;Parent=Msa1389750-mRNA-1 |
| tig0021300 | CDS | 32518 | 32523 | 32518 | ID=Msa1389750-mRNA-1:cds;Parent=Msa1389750-mRNA-1 |
| tig0021300 | CDS | 32722 | 32797 | 32722 | ID=Msa1389750-mRNA-1:cds;Parent=Msa1389750-mRNA-1 |
| tig0021300 | CDS | 33018 | 33298 | 33018 | ID=Msa1389750-mRNA-1:cds;Parent=Msa1389750-mRNA-1 |
| tig0021300 | CDS | 36310 | 36385 | 36310 | ID=Msa1389750-mRNA-1:cds;Parent=Msa1389750-mRNA-1 |
| tig0021300 | CDS | 36701 | 37038 | 36701 | ID=Msa1389750-mRNA-1:cds;Parent=Msa1389750-mRNA-1 |
| tig0021300 | three_prime_UTR | 37039 | 37237 | 37039 | ID=Msa1389750-mRNA-1:three_prime_utr;Parent=Msa1389750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
