Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038770 | sp|Q9LTE3|HIP12_ARATH | 55.072 | 69 | 30 | 1 | 1 | 69 | 1 | 68 | 3.57e-17 | 78.2 |
| Msa0038770 | sp|Q9LTE3|HIP12_ARATH | 41.045 | 134 | 58 | 5 | 123 | 256 | 4 | 116 | 2.44e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038760 | Msa0038770 | 0.818107 | 2.329743e-52 | -8.615850e-47 |
| Msa0038770 | Msa0086560 | 0.810284 | 1.244329e-50 | -8.615850e-47 |
| Msa0038770 | Msa1389750 | 0.814039 | 1.887546e-51 | -8.615850e-47 |
| Msa0038770 | Msa1389760 | 0.841429 | 4.779110e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038770 | MtrunA17_Chr1g0202561 | 93.431 | 137 | 9 | 0 | 122 | 258 | 3 | 139 | 6.05e-70 | 211 |
| Msa0038770 | MtrunA17_Chr1g0202561 | 75.000 | 128 | 26 | 4 | 1 | 123 | 1 | 127 | 2.99e-41 | 138 |
| Msa0038770 | MtrunA17_Chr1g0202541 | 84.783 | 138 | 16 | 3 | 122 | 258 | 3 | 136 | 1.48e-59 | 185 |
| Msa0038770 | MtrunA17_Chr1g0202541 | 88.618 | 123 | 12 | 2 | 1 | 121 | 1 | 123 | 1.63e-55 | 174 |
| Msa0038770 | MtrunA17_Chr1g0202581 | 90.351 | 114 | 11 | 0 | 1 | 114 | 1 | 114 | 1.74e-51 | 164 |
| Msa0038770 | MtrunA17_Chr1g0202581 | 67.391 | 138 | 36 | 4 | 122 | 258 | 3 | 132 | 8.74e-49 | 157 |
| Msa0038770 | MtrunA17_Chr1g0204291 | 86.777 | 121 | 14 | 1 | 1 | 121 | 1 | 119 | 5.31e-50 | 160 |
| Msa0038770 | MtrunA17_Chr1g0204291 | 71.014 | 138 | 31 | 4 | 122 | 258 | 3 | 132 | 4.99e-47 | 153 |
| Msa0038770 | MtrunA17_Chr6g0469571 | 58.824 | 136 | 41 | 3 | 122 | 257 | 3 | 123 | 8.84e-37 | 126 |
| Msa0038770 | MtrunA17_Chr6g0469571 | 77.143 | 70 | 15 | 1 | 1 | 69 | 1 | 70 | 5.33e-29 | 106 |
| Msa0038770 | MtrunA17_Chr6g0469551 | 58.088 | 136 | 42 | 3 | 122 | 257 | 3 | 123 | 2.31e-36 | 125 |
| Msa0038770 | MtrunA17_Chr6g0469551 | 75.714 | 70 | 16 | 1 | 1 | 69 | 1 | 70 | 1.38e-28 | 105 |
| Msa0038770 | MtrunA17_Chr6g0469591 | 58.088 | 136 | 42 | 3 | 122 | 257 | 3 | 123 | 4.55e-35 | 122 |
| Msa0038770 | MtrunA17_Chr6g0469591 | 74.286 | 70 | 17 | 1 | 1 | 69 | 1 | 70 | 5.13e-27 | 101 |
| Msa0038770 | MtrunA17_Chr6g0469681 | 53.676 | 136 | 51 | 3 | 122 | 257 | 3 | 126 | 3.89e-31 | 112 |
| Msa0038770 | MtrunA17_Chr6g0469681 | 68.571 | 70 | 21 | 1 | 1 | 69 | 1 | 70 | 7.02e-26 | 98.6 |
| Msa0038770 | MtrunA17_Chr6g0469671 | 75.000 | 68 | 17 | 0 | 122 | 189 | 3 | 70 | 6.67e-30 | 108 |
| Msa0038770 | MtrunA17_Chr6g0469671 | 70.000 | 70 | 20 | 1 | 1 | 69 | 1 | 70 | 9.83e-28 | 102 |
| Msa0038770 | MtrunA17_Chr6g0469651 | 50.714 | 140 | 55 | 2 | 122 | 257 | 3 | 132 | 1.43e-29 | 108 |
| Msa0038770 | MtrunA17_Chr6g0469651 | 75.714 | 70 | 16 | 1 | 1 | 69 | 1 | 70 | 3.92e-27 | 102 |
| Msa0038770 | MtrunA17_Chr8g0387471 | 48.201 | 139 | 54 | 4 | 122 | 257 | 3 | 126 | 3.24e-28 | 104 |
| Msa0038770 | MtrunA17_Chr8g0387471 | 67.606 | 71 | 22 | 1 | 1 | 70 | 1 | 71 | 3.56e-24 | 94.0 |
| Msa0038770 | MtrunA17_Chr7g0233191 | 48.780 | 123 | 45 | 3 | 122 | 242 | 3 | 109 | 1.50e-27 | 102 |
| Msa0038770 | MtrunA17_Chr7g0233191 | 46.341 | 123 | 47 | 4 | 1 | 119 | 1 | 108 | 5.09e-25 | 95.9 |
| Msa0038770 | MtrunA17_Chr1g0202501 | 51.471 | 136 | 57 | 2 | 122 | 257 | 3 | 129 | 5.01e-27 | 101 |
| Msa0038770 | MtrunA17_Chr1g0202501 | 53.279 | 122 | 53 | 2 | 1 | 121 | 1 | 119 | 8.48e-23 | 90.5 |
| Msa0038770 | MtrunA17_Chr7g0233201 | 47.154 | 123 | 47 | 3 | 122 | 242 | 3 | 109 | 1.02e-26 | 100 |
| Msa0038770 | MtrunA17_Chr7g0233201 | 44.715 | 123 | 49 | 4 | 1 | 119 | 1 | 108 | 3.37e-24 | 93.6 |
| Msa0038770 | MtrunA17_Chr7g0233231 | 45.455 | 121 | 50 | 2 | 122 | 242 | 3 | 107 | 1.29e-26 | 99.8 |
| Msa0038770 | MtrunA17_Chr7g0233231 | 44.167 | 120 | 53 | 2 | 1 | 119 | 1 | 107 | 1.31e-23 | 92.0 |
| Msa0038770 | MtrunA17_Chr7g0233251 | 46.457 | 127 | 49 | 4 | 122 | 246 | 3 | 112 | 1.74e-26 | 99.8 |
| Msa0038770 | MtrunA17_Chr7g0233251 | 44.094 | 127 | 52 | 4 | 1 | 123 | 1 | 112 | 4.62e-24 | 93.2 |
| Msa0038770 | MtrunA17_Chr7g0233211 | 46.341 | 123 | 48 | 3 | 122 | 242 | 3 | 109 | 3.52e-26 | 98.6 |
| Msa0038770 | MtrunA17_Chr7g0233211 | 59.740 | 77 | 30 | 1 | 1 | 76 | 1 | 77 | 2.86e-23 | 91.3 |
| Msa0038770 | MtrunA17_Chr7g0233181 | 62.162 | 74 | 28 | 0 | 122 | 195 | 3 | 76 | 9.59e-26 | 97.4 |
| Msa0038770 | MtrunA17_Chr7g0233181 | 59.211 | 76 | 30 | 1 | 1 | 75 | 1 | 76 | 4.79e-24 | 93.2 |
| Msa0038770 | MtrunA17_Chr6g0469541 | 49.167 | 120 | 42 | 3 | 122 | 241 | 3 | 103 | 1.01e-25 | 97.4 |
| Msa0038770 | MtrunA17_Chr6g0469541 | 57.895 | 76 | 31 | 1 | 1 | 75 | 1 | 76 | 8.17e-23 | 90.1 |
| Msa0038770 | MtrunA17_Chr7g0248671 | 54.545 | 66 | 30 | 0 | 122 | 187 | 3 | 68 | 4.64e-18 | 79.3 |
| Msa0038770 | MtrunA17_Chr7g0248671 | 57.353 | 68 | 28 | 1 | 1 | 67 | 1 | 68 | 5.41e-17 | 76.3 |
| Msa0038770 | MtrunA17_Chr8g0348361 | 59.574 | 47 | 19 | 0 | 141 | 187 | 22 | 68 | 2.41e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038770 | AT5G52740.1 | 55.072 | 69 | 30 | 1 | 1 | 69 | 1 | 68 | 3.63e-18 | 78.2 |
| Msa0038770 | AT5G52740.1 | 41.045 | 134 | 58 | 5 | 123 | 256 | 4 | 116 | 2.48e-16 | 73.6 |
| Msa0038770 | AT5G52760.1 | 42.500 | 120 | 52 | 4 | 2 | 119 | 4 | 108 | 2.51e-17 | 76.3 |
| Msa0038770 | AT5G52760.1 | 38.849 | 139 | 62 | 6 | 124 | 258 | 7 | 126 | 1.07e-16 | 74.7 |
| Msa0038770 | AT1G01490.4 | 43.878 | 98 | 54 | 1 | 93 | 189 | 1 | 98 | 3.85e-17 | 77.8 |
| Msa0038770 | AT1G01490.4 | 55.072 | 69 | 29 | 2 | 3 | 69 | 30 | 98 | 3.90e-14 | 69.7 |
| Msa0038770 | AT1G01490.1 | 56.522 | 69 | 29 | 1 | 122 | 189 | 3 | 71 | 4.87e-17 | 77.0 |
| Msa0038770 | AT1G01490.1 | 56.338 | 71 | 29 | 2 | 1 | 69 | 1 | 71 | 8.88e-16 | 73.6 |
| Msa0038770 | AT1G01490.2 | 56.522 | 69 | 29 | 1 | 122 | 189 | 3 | 71 | 4.87e-17 | 77.0 |
| Msa0038770 | AT1G01490.2 | 56.338 | 71 | 29 | 2 | 1 | 69 | 1 | 71 | 8.88e-16 | 73.6 |
| Msa0038770 | AT5G52750.1 | 33.333 | 141 | 84 | 3 | 122 | 258 | 5 | 139 | 3.76e-13 | 65.5 |
| Msa0038770 | AT5G52750.1 | 50.769 | 65 | 31 | 1 | 3 | 66 | 5 | 69 | 7.51e-13 | 64.7 |
Find 51 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCAGTCTCTGGCCTTTC+AGG | 0.149438 | 1_1:-68253161 | Msa0038770:intron |
| AAGGCAGTCTCTGGCCTTTC+AGG | 0.156873 | 1_1:-68256753 | Msa0038770:intron |
| CTTACGGCACTGTTGTAATA+AGG | 0.295936 | 1_1:+68252546 | None:intergenic |
| ATTAATCCTTTCGTGCTCTA+TGG | 0.313770 | 1_1:-68256307 | Msa0038770:CDS |
| TTGATGCAAATTGTAATAGA+AGG | 0.314402 | 1_1:+68257072 | None:intergenic |
| GACAAGAAAATGACCTTAAT+AGG | 0.340701 | 1_1:-68252795 | Msa0038770:CDS |
| AACTAACCTTCATATTGTTA+TGG | 0.351439 | 1_1:+68257021 | None:intergenic |
| ATTCATCTGATGATTATAAT+AGG | 0.369814 | 1_1:+68256273 | None:intergenic |
| ACAGAAAGTTGTGTTAAAGT+TGG | 0.398742 | 1_1:-68253219 | Msa0038770:intron |
| ACAGAAAATTGTGCTAAAGT+TGG | 0.399453 | 1_1:-68256811 | Msa0038770:intron |
| ACGAAAGGATTAATTATCAT+TGG | 0.419156 | 1_1:+68256316 | None:intergenic |
| AGCTTAGCCACTACAAGTAC+TGG | 0.428511 | 1_1:+68252762 | None:intergenic |
| AGCTTAGCCACTACAAGTAC+TGG | 0.428511 | 1_1:+68256448 | None:intergenic |
| AGGATCCTCTTCAACGCTTA+CGG | 0.439566 | 1_1:+68252530 | None:intergenic |
| TAGATGATGACACAACCATT+AGG | 0.444909 | 1_1:+68252510 | None:intergenic |
| TGGGTCGGTATCTCCTACTA+AGG | 0.446407 | 1_1:+68256468 | None:intergenic |
| AGGGAAAGAATGAAGAGCTA+GGG | 0.448627 | 1_1:+68257092 | None:intergenic |
| GACAAGAAAATGACCTTAGT+AGG | 0.452020 | 1_1:-68256481 | Msa0038770:CDS |
| AAGGGAAAGAATGAAGAGCT+AGG | 0.471515 | 1_1:+68257091 | None:intergenic |
| AAAGCTATGAAGGCAGTCTC+TGG | 0.474866 | 1_1:-68253170 | Msa0038770:CDS |
| AAAGCTATGAAGGCAGTCTC+TGG | 0.474866 | 1_1:-68256762 | Msa0038770:CDS |
| TTCAGTTGGACCAGCTAAAG+AGG | 0.475094 | 1_1:-68252712 | Msa0038770:CDS |
| ATCTGATGATTATAATAAGC+AGG | 0.479465 | 1_1:+68252585 | None:intergenic |
| TTCAGTTGGACCAGCTAAAG+TGG | 0.482641 | 1_1:-68256398 | Msa0038770:CDS |
| GGGAAAGAATGAAGAGCTAG+GGG | 0.487866 | 1_1:+68257093 | None:intergenic |
| GCACGGTAGTATGAATTGTA+TGG | 0.489699 | 1_1:+68256250 | None:intergenic |
| ATTGAAGTGGTAATAGGAAG+AGG | 0.495528 | 1_1:+68257117 | None:intergenic |
| CATGCTGAAATACTTTCAGT+TGG | 0.503143 | 1_1:-68252726 | Msa0038770:CDS |
| TGATGATTATAATAGGTAGT+AGG | 0.521368 | 1_1:+68256280 | None:intergenic |
| CAGTGCCGTAAGCGTTGAAG+AGG | 0.540164 | 1_1:-68252535 | Msa0038770:CDS |
| CATGCAGAAATACTTTCAGT+TGG | 0.545738 | 1_1:-68256412 | Msa0038770:CDS |
| TGGGTCGGTATCTCCTATTA+AGG | 0.546426 | 1_1:+68252782 | None:intergenic |
| TACTTGTAGTGGCTAAGCTA+AGG | 0.547972 | 1_1:-68252758 | Msa0038770:CDS |
| TACTTGTAGTGGCTAAGCTA+AGG | 0.547972 | 1_1:-68256444 | Msa0038770:CDS |
| CATTTGATTCAATACCTGAA+AGG | 0.552371 | 1_1:+68253147 | None:intergenic |
| TTGTAATAAGGATTGTATTG+TGG | 0.559757 | 1_1:+68252558 | None:intergenic |
| GGTGTACCATAGAAAATGAA+AGG | 0.560041 | 1_1:+68252606 | None:intergenic |
| TGATGCAAATTGTAATAGAA+GGG | 0.565633 | 1_1:+68257073 | None:intergenic |
| ATAGTGTTGATTATAATATG+AGG | 0.565645 | 1_1:-68252381 | Msa0038770:three_prime_UTR |
| TAACCTTCATATTGTTATGG+AGG | 0.572622 | 1_1:+68257024 | None:intergenic |
| TAGCCTCCATAACAATATGA+AGG | 0.575947 | 1_1:-68257027 | Msa0038770:intron |
| TTATGGAGGCTACTGAGCTA+AGG | 0.584571 | 1_1:+68257038 | None:intergenic |
| AGCGTTGAAGAGGATCCTAA+TGG | 0.597342 | 1_1:-68252525 | Msa0038770:CDS |
| GGTGTACCATAGAGCACGAA+AGG | 0.612408 | 1_1:+68256301 | None:intergenic |
| GCTTAGCCACTACAAGTACT+GGG | 0.632143 | 1_1:+68252763 | None:intergenic |
| GCTTAGCCACTACAAGTACT+GGG | 0.632143 | 1_1:+68256449 | None:intergenic |
| AGCCACTACAAGTACTGGGT+CGG | 0.650008 | 1_1:+68252767 | None:intergenic |
| AGCCACTACAAGTACTGGGT+CGG | 0.650008 | 1_1:+68256453 | None:intergenic |
| TACCGACCCAGTACTTGTAG+TGG | 0.655849 | 1_1:-68252769 | Msa0038770:CDS |
| TACCGACCCAGTACTTGTAG+TGG | 0.655849 | 1_1:-68256455 | Msa0038770:CDS |
| GGAAAGAATGAAGAGCTAGG+GGG | 0.682663 | 1_1:+68257094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTTTATATTATTTT+TGG | - | chr1_1:68256984-68257003 | Msa0038770:intron | 0.0% |
| !!! | AGAAAAATAATTATTTTTTG+AGG | - | chr1_1:68253327-68253346 | Msa0038770:intron | 10.0% |
| !!! | TTTTTTTAAATAAGCTAAAA+TGG | - | chr1_1:68253675-68253694 | Msa0038770:intron | 10.0% |
| !! | GATAATTCTATTTATTAATT+AGG | + | chr1_1:68254632-68254651 | None:intergenic | 10.0% |
| !! | CTAAAATTTAATACATATAT+GGG | + | chr1_1:68256132-68256151 | None:intergenic | 10.0% |
| !! | ACTAAAATTTAATACATATA+TGG | + | chr1_1:68256133-68256152 | None:intergenic | 10.0% |
| !!! | TTGTATTTTAATAATTTTGC+AGG | - | chr1_1:68252944-68252963 | Msa0038770:intron | 15.0% |
| !!! | TGTATTTTAATAATTTTGCA+GGG | - | chr1_1:68252945-68252964 | Msa0038770:intron | 15.0% |
| !!! | TTCTTTTTATCATCTTTTTT+AGG | + | chr1_1:68253115-68253134 | None:intergenic | 15.0% |
| !! | TAAAAAAGATGATAAAAAGA+AGG | - | chr1_1:68253114-68253133 | Msa0038770:intron | 15.0% |
| !! | TTTCTACAATTTAATTGTTA+TGG | + | chr1_1:68253959-68253978 | None:intergenic | 15.0% |
| !!! | AATGAATTTTTTGAGATTTT+GGG | + | chr1_1:68254837-68254856 | None:intergenic | 15.0% |
| !!! | AAATGAATTTTTTGAGATTT+TGG | + | chr1_1:68254838-68254857 | None:intergenic | 15.0% |
| !! | TCAAAAAATTCATTTCTAAT+AGG | - | chr1_1:68254843-68254862 | Msa0038770:intron | 15.0% |
| !! | TTTAAAAATTTCAAAGTTGA+AGG | + | chr1_1:68255225-68255244 | None:intergenic | 15.0% |
| !!! | TAAACATGTCTAATTTTTTA+TGG | + | chr1_1:68255287-68255306 | None:intergenic | 15.0% |
| !!! | AAGTAAAGATTTTATTTTAG+GGG | + | chr1_1:68255646-68255665 | None:intergenic | 15.0% |
| !!! | GAAGTAAAGATTTTATTTTA+GGG | + | chr1_1:68255647-68255666 | None:intergenic | 15.0% |
| !!! | AGAAGTAAAGATTTTATTTT+AGG | + | chr1_1:68255648-68255667 | None:intergenic | 15.0% |
| !!! | AAAATATCAAATTTGAAATC+TGG | + | chr1_1:68256470-68256489 | None:intergenic | 15.0% |
| !!! | TTCTTTTTATCATCTTTTTT+AGG | + | chr1_1:68253115-68253134 | None:intergenic | 15.0% |
| !! | TAAAAAAGATGATAAAAAGA+AGG | - | chr1_1:68253114-68253133 | Msa0038770:intron | 15.0% |
| !!! | AAAAAATCTACTTGTTAGAA+CGG | + | chr1_1:68252637-68252656 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCTTTACCTGAA+AGG | + | chr1_1:68252737-68252756 | None:intergenic | 20.0% |
| !!! | CGATTTTTATTTTAGTGATA+TGG | - | chr1_1:68252907-68252926 | Msa0038770:intron | 20.0% |
| !!! | GTATTTTAATAATTTTGCAG+GGG | - | chr1_1:68252946-68252965 | Msa0038770:intron | 20.0% |
| !! | ATTCATCTGATGATTATAAT+AGG | + | chr1_1:68253203-68253222 | None:intergenic | 20.0% |
| !!! | TCATTATATACTTTTTTGAG+AGG | - | chr1_1:68253364-68253383 | Msa0038770:intron | 20.0% |
| !!! | CATTATATACTTTTTTGAGA+GGG | - | chr1_1:68253365-68253384 | Msa0038770:intron | 20.0% |
| !! | TCTACTAATGTATTAAATTG+TGG | + | chr1_1:68253520-68253539 | None:intergenic | 20.0% |
| !! | AACATAAATGCACAATTTAT+TGG | + | chr1_1:68253875-68253894 | None:intergenic | 20.0% |
| !!! | TTGAACAAATTATCTTTTGT+TGG | - | chr1_1:68254211-68254230 | Msa0038770:intron | 20.0% |
| !!! | AAAATTAAGAGCATTATTGA+CGG | - | chr1_1:68254348-68254367 | Msa0038770:intron | 20.0% |
| !!! | AAATTCCTTTTTATTTTGGT+AGG | + | chr1_1:68254603-68254622 | None:intergenic | 20.0% |
| !!! | ATGGAAATTCCTTTTTATTT+TGG | + | chr1_1:68254607-68254626 | None:intergenic | 20.0% |
| !! | TCTATTTATTAATTAGGTGA+TGG | + | chr1_1:68254626-68254645 | None:intergenic | 20.0% |
| !! | ATATCAAATTCAACTTCTAT+TGG | + | chr1_1:68254764-68254783 | None:intergenic | 20.0% |
| !! | ATTTGATATGTTTGATTCAT+AGG | - | chr1_1:68254775-68254794 | Msa0038770:intron | 20.0% |
| !!! | ATGAATTTTTTGAGATTTTG+GGG | + | chr1_1:68254836-68254855 | None:intergenic | 20.0% |
| !! | TCAAATAATATGTCATTGAT+AGG | + | chr1_1:68255013-68255032 | None:intergenic | 20.0% |
| !!! | ATTTATGTAGACAAATCTTT+TGG | + | chr1_1:68255179-68255198 | None:intergenic | 20.0% |
| !!! | ATAATATCCATTTTTTTACG+AGG | - | chr1_1:68255526-68255545 | Msa0038770:intron | 20.0% |
| !!! | GTGGTTATATAAGTTATTTT+GGG | + | chr1_1:68255584-68255603 | None:intergenic | 20.0% |
| !!! | TGTGGTTATATAAGTTATTT+TGG | + | chr1_1:68255585-68255604 | None:intergenic | 20.0% |
| !! | TTAATTTATTATCTTCGTTG+TGG | + | chr1_1:68255603-68255622 | None:intergenic | 20.0% |
| !! | ATAAAATCTTTACTTCTTGT+AGG | - | chr1_1:68255651-68255670 | Msa0038770:intron | 20.0% |
| !!! | ATAGTGTTGATTATAATATG+AGG | - | chr1_1:68257092-68257111 | Msa0038770:five_prime_UTR | 20.0% |
| ! | TGATGCAAATTGTAATAGAA+GGG | + | chr1_1:68252403-68252422 | None:intergenic | 25.0% |
| ! | TTGATGCAAATTGTAATAGA+AGG | + | chr1_1:68252404-68252423 | None:intergenic | 25.0% |
| ! | AACTAACCTTCATATTGTTA+TGG | + | chr1_1:68252455-68252474 | None:intergenic | 25.0% |
| !!! | TAAAAGAGTGGTTTTAATCA+AGG | + | chr1_1:68252487-68252506 | None:intergenic | 25.0% |
| ! | TCATACTTTAGCTATGATAT+AGG | + | chr1_1:68252513-68252532 | None:intergenic | 25.0% |
| ! | TATCATAGCTAAAGTATGAT+TGG | - | chr1_1:68252514-68252533 | Msa0038770:CDS | 25.0% |
| ! | TTGAAATTGTGCATAAGAAA+AGG | + | chr1_1:68252548-68252567 | None:intergenic | 25.0% |
| ! | AATCAAACAAAAAGCTATGA+AGG | - | chr1_1:68252701-68252720 | Msa0038770:CDS | 25.0% |
| ! | ATCGAACTTAGTCTAATATA+CGG | + | chr1_1:68252828-68252847 | None:intergenic | 25.0% |
| !!! | ACTAAGTTCGATATTTTGAT+TGG | - | chr1_1:68252836-68252855 | Msa0038770:intron | 25.0% |
| !!! | AATCATTGATTCTACGAATT+TGG | + | chr1_1:68252884-68252903 | None:intergenic | 25.0% |
| ! | ACGAAAGGATTAATTATCAT+TGG | + | chr1_1:68253160-68253179 | None:intergenic | 25.0% |
| ! | TGATGATTATAATAGGTAGT+AGG | + | chr1_1:68253196-68253215 | None:intergenic | 25.0% |
| !! | TGTATTAAATTGTGGATTGA+TGG | + | chr1_1:68253512-68253531 | None:intergenic | 25.0% |
| !! | TATGGTTTTCCTTAAATATG+AGG | + | chr1_1:68253595-68253614 | None:intergenic | 25.0% |
| ! | CTACAAAAGAATGAAAAAGA+TGG | - | chr1_1:68253638-68253657 | Msa0038770:intron | 25.0% |
| ! | TTATACAGGATATGTAAAGA+AGG | + | chr1_1:68253716-68253735 | None:intergenic | 25.0% |
| ! | TTCTTTACATATCCTGTATA+AGG | - | chr1_1:68253715-68253734 | Msa0038770:intron | 25.0% |
| ! | TAAATGCACAATTTATTGGA+TGG | + | chr1_1:68253871-68253890 | None:intergenic | 25.0% |
| !!! | GTAACTTTTTCAGTCAAATT+TGG | + | chr1_1:68254109-68254128 | None:intergenic | 25.0% |
| !!! | AAGATAATTTGTTCAAACGA+GGG | + | chr1_1:68254207-68254226 | None:intergenic | 25.0% |
| !!! | AAAGATAATTTGTTCAAACG+AGG | + | chr1_1:68254208-68254227 | None:intergenic | 25.0% |
| !! | ACAAATTATCTTTTGTTGGA+AGG | - | chr1_1:68254215-68254234 | Msa0038770:intron | 25.0% |
| !! | TAAAAGTCAATCTTTTTGTG+TGG | + | chr1_1:68254258-68254277 | None:intergenic | 25.0% |
| !!! | TATTTTTATGCCATACTACA+GGG | - | chr1_1:68254284-68254303 | Msa0038770:intron | 25.0% |
| !!! | AATTCAACTTCTATTGGTTT+GGG | + | chr1_1:68254758-68254777 | None:intergenic | 25.0% |
| !! | AAATTCAACTTCTATTGGTT+TGG | + | chr1_1:68254759-68254778 | None:intergenic | 25.0% |
| !!! | ACAAACAATTTTGAGTTCAT+AGG | + | chr1_1:68254964-68254983 | None:intergenic | 25.0% |
| !!! | ACATGTCTAATTTTTTATGG+AGG | + | chr1_1:68255284-68255303 | None:intergenic | 25.0% |
| ! | ATAAACTAAAACCTCATTCA+AGG | - | chr1_1:68255486-68255505 | Msa0038770:intron | 25.0% |
| ! | TTACAAAATTTCCTTGAATG+AGG | + | chr1_1:68255500-68255519 | None:intergenic | 25.0% |
| !!! | TTTCTAATCTCTAGTTTGTT+TGG | + | chr1_1:68255697-68255716 | None:intergenic | 25.0% |
| ! | AACAAACTAGAGATTAGAAA+AGG | - | chr1_1:68255697-68255716 | Msa0038770:intron | 25.0% |
| !! | TTTGAGGCTTATTTATAGTA+AGG | + | chr1_1:68255832-68255851 | None:intergenic | 25.0% |
| ! | TGATGCAAACTTTAATAGAA+GGG | + | chr1_1:68255905-68255924 | None:intergenic | 25.0% |
| ! | TTGATGCAAACTTTAATAGA+AGG | + | chr1_1:68255906-68255925 | None:intergenic | 25.0% |
| ! | TGATGAAAAAAGTAAAAGAG+TGG | + | chr1_1:68256005-68256024 | None:intergenic | 25.0% |
| ! | CATCATAGCTAAAATATGTT+TGG | - | chr1_1:68256020-68256039 | Msa0038770:intron | 25.0% |
| ! | TTTAAATGTTGCATAAGGTA+AGG | + | chr1_1:68256058-68256077 | None:intergenic | 25.0% |
| !!! | CTGAATTTTAAGTTCTTCTT+TGG | - | chr1_1:68256079-68256098 | Msa0038770:intron | 25.0% |
| ! | AGAAAAATCAAGTAGTTGTT+AGG | + | chr1_1:68256231-68256250 | None:intergenic | 25.0% |
| ! | GATCATGTATCATCAATAAT+CGG | - | chr1_1:68256396-68256415 | Msa0038770:CDS | 25.0% |
| ! | ATCATGTATCATCAATAATC+GGG | - | chr1_1:68256397-68256416 | Msa0038770:CDS | 25.0% |
| ! | AATCCAAATACTCCAAAATT+TGG | - | chr1_1:68256434-68256453 | Msa0038770:CDS | 25.0% |
| ! | TGTATTTGTAATATTGTTGC+AGG | - | chr1_1:68256627-68256646 | Msa0038770:intron | 25.0% |
| ! | GTATTTGTAATATTGTTGCA+GGG | - | chr1_1:68256628-68256647 | Msa0038770:intron | 25.0% |
| ! | TATTTGTAATATTGTTGCAG+GGG | - | chr1_1:68256629-68256648 | Msa0038770:intron | 25.0% |
| !! | ATTGATCCTTTCATTTTCTA+TGG | - | chr1_1:68256861-68256880 | Msa0038770:intron | 25.0% |
| ! | ATCTGATGATTATAATAAGC+AGG | + | chr1_1:68256891-68256910 | None:intergenic | 25.0% |
| ! | TTGTAATAAGGATTGTATTG+TGG | + | chr1_1:68256918-68256937 | None:intergenic | 25.0% |
| ! | AATCCGAAAAATAATCATTG+TGG | - | chr1_1:68257015-68257034 | Msa0038770:intron | 25.0% |
| !!! | CAACCACAATGATTATTTTT+CGG | + | chr1_1:68257021-68257040 | None:intergenic | 25.0% |
| TAACCTTCATATTGTTATGG+AGG | + | chr1_1:68252452-68252471 | None:intergenic | 30.0% | |
| TGATATAGGAGATAAAAGAG+TGG | + | chr1_1:68252499-68252518 | None:intergenic | 30.0% | |
| ACAGAAAATTGTGCTAAAGT+TGG | - | chr1_1:68252662-68252681 | Msa0038770:CDS | 30.0% | |
| CGCAAATATCCTCATATTTA+AGG | - | chr1_1:68253583-68253602 | Msa0038770:intron | 30.0% | |
| CGAGGTTGTATATAGTATTA+TGG | + | chr1_1:68253613-68253632 | None:intergenic | 30.0% | |
| ACACTAGAAAACAATGAGAA+AGG | - | chr1_1:68253791-68253810 | Msa0038770:intron | 30.0% | |
| !! | TTACTTTTGATTACCACATG+TGG | + | chr1_1:68253826-68253845 | None:intergenic | 30.0% |
| ACATGTGGTAATCAAAAGTA+AGG | - | chr1_1:68253825-68253844 | Msa0038770:intron | 30.0% | |
| CATTTATGTTGTCAAACAAG+TGG | - | chr1_1:68253885-68253904 | Msa0038770:intron | 30.0% | |
| !! | AGATAATTTGTTCAAACGAG+GGG | + | chr1_1:68254206-68254225 | None:intergenic | 30.0% |
| ! | AATTATCTTTTGTTGGAAGG+CGG | - | chr1_1:68254218-68254237 | Msa0038770:intron | 30.0% |
| !! | GTATTTTTATGCCATACTAC+AGG | - | chr1_1:68254283-68254302 | Msa0038770:intron | 30.0% |
| !! | AAGGAATAGCTTTGAAAGAT+AGG | + | chr1_1:68254568-68254587 | None:intergenic | 30.0% |
| !!! | TTTTATTTTGGTAGGATCCT+TGG | + | chr1_1:68254595-68254614 | None:intergenic | 30.0% |
| AGGATCCTACCAAAATAAAA+AGG | - | chr1_1:68254595-68254614 | Msa0038770:intron | 30.0% | |
| TCAAAAAATCGATCACAAGA+TGG | + | chr1_1:68254717-68254736 | None:intergenic | 30.0% | |
| TGATATGTTTGATTCATAGG+CGG | - | chr1_1:68254778-68254797 | Msa0038770:intron | 30.0% | |
| ! | GTAGACAAATCTTTTGGTAA+TGG | + | chr1_1:68255173-68255192 | None:intergenic | 30.0% |
| !!! | ATATCCATTTTTTTACGAGG+AGG | - | chr1_1:68255529-68255548 | Msa0038770:intron | 30.0% |
| ATTTCCTCCTCGTAAAAAAA+TGG | + | chr1_1:68255536-68255555 | None:intergenic | 30.0% | |
| TTTAGGGGAATTACATAAAG+AGG | + | chr1_1:68255631-68255650 | None:intergenic | 30.0% | |
| !! | TACTTTGTCTTGACTTGTTT+CGG | - | chr1_1:68255772-68255791 | Msa0038770:intron | 30.0% |
| GGCTTATTTATAGTAAGGTA+AGG | + | chr1_1:68255827-68255846 | None:intergenic | 30.0% | |
| GTTGAAGTGATAATTTGAAG+AGG | + | chr1_1:68255864-68255883 | None:intergenic | 30.0% | |
| AACTTTAATAGAAGGGAAAG+AGG | + | chr1_1:68255898-68255917 | None:intergenic | 30.0% | |
| AAAAGCTTCCATAACAATGA+AGG | - | chr1_1:68255949-68255968 | Msa0038770:intron | 30.0% | |
| !!! | GTGGTTTTAACTTTTAACCA+GGG | + | chr1_1:68255986-68256005 | None:intergenic | 30.0% |
| !!! | AGTGGTTTTAACTTTTAACC+AGG | + | chr1_1:68255987-68256006 | None:intergenic | 30.0% |
| !! | TCAGCTTTAAATGTTGCATA+AGG | + | chr1_1:68256063-68256082 | None:intergenic | 30.0% |
| ACAGAAAGTTGTGTTAAAGT+TGG | - | chr1_1:68256254-68256273 | Msa0038770:CDS | 30.0% | |
| CATTTGATTCAATACCTGAA+AGG | + | chr1_1:68256329-68256348 | None:intergenic | 30.0% | |
| !!! | AGTCCAAATTTTGGAGTATT+TGG | + | chr1_1:68256440-68256459 | None:intergenic | 30.0% |
| TGCATTGAAATCTGATTAGA+CGG | - | chr1_1:68256515-68256534 | Msa0038770:intron | 30.0% | |
| TCAATGAACAATTGATGCTA+CGG | + | chr1_1:68256580-68256599 | None:intergenic | 30.0% | |
| GACAAGAAAATGACCTTAAT+AGG | - | chr1_1:68256678-68256697 | Msa0038770:intron | 30.0% | |
| ATTGAAGTGGTAATAGGAAG+AGG | + | chr1_1:68252359-68252378 | None:intergenic | 35.0% | |
| TAGCCTCCATAACAATATGA+AGG | - | chr1_1:68252446-68252465 | Msa0038770:three_prime_UTR | 35.0% | |
| ! | TACCAAAGTGCTTCAAATTC+AGG | + | chr1_1:68252572-68252591 | None:intergenic | 35.0% |
| TTGATTGGACAATTCAGATG+TGG | - | chr1_1:68252851-68252870 | Msa0038770:intron | 35.0% | |
| GACAAGAAAATGACCTTAGT+AGG | - | chr1_1:68252992-68253011 | Msa0038770:intron | 35.0% | |
| CATGCAGAAATACTTTCAGT+TGG | - | chr1_1:68253061-68253080 | Msa0038770:intron | 35.0% | |
| ! | TCTTTCTTTTCCACTTTAGC+TGG | + | chr1_1:68253088-68253107 | None:intergenic | 35.0% |
| ATTAATCCTTTCGTGCTCTA+TGG | - | chr1_1:68253166-68253185 | Msa0038770:CDS | 35.0% | |
| TATATGATGACACAGCCATT+AGG | + | chr1_1:68253268-68253287 | None:intergenic | 35.0% | |
| AGTTACATCATACTGAGATC+CGG | - | chr1_1:68253767-68253786 | Msa0038770:intron | 35.0% | |
| !! | CTCATTGTTTTCTAGTGTAC+CGG | + | chr1_1:68253789-68253808 | None:intergenic | 35.0% |
| TTATGTTGTCAAACAAGTGG+TGG | - | chr1_1:68253888-68253907 | Msa0038770:intron | 35.0% | |
| ! | TGATTGGTTAGACTTCTTCA+AGG | + | chr1_1:68254075-68254094 | None:intergenic | 35.0% |
| ! | TTTGGATTGTCGTTTCTGAT+TGG | + | chr1_1:68254091-68254110 | None:intergenic | 35.0% |
| GCAACTCAACATAACAATGT+AGG | + | chr1_1:68254316-68254335 | None:intergenic | 35.0% | |
| ! | TGTTGAACTCTGTTAGTTTG+CGG | + | chr1_1:68254418-68254437 | None:intergenic | 35.0% |
| !!! | TGATATGAAGCTTTTAGGGT+GGG | + | chr1_1:68254498-68254517 | None:intergenic | 35.0% |
| ! | TGGCTGATATGAAGCTTTTA+GGG | + | chr1_1:68254502-68254521 | None:intergenic | 35.0% |
| ! | TTAGCTTTCTGATAACGAGA+TGG | + | chr1_1:68254531-68254550 | None:intergenic | 35.0% |
| AAAGCTATTCCTTTCAACCA+AGG | - | chr1_1:68254575-68254594 | Msa0038770:intron | 35.0% | |
| CATAGTATTGTTTGTGGTGT+TGG | + | chr1_1:68254680-68254699 | None:intergenic | 35.0% | |
| TCAGTGCATAGTATTGTTTG+TGG | + | chr1_1:68254686-68254705 | None:intergenic | 35.0% | |
| ACTCATACAATTTAGTGCAG+CGG | - | chr1_1:68254926-68254945 | Msa0038770:intron | 35.0% | |
| ! | GGTAATGGTAGATTCAAAGT+TGG | + | chr1_1:68255158-68255177 | None:intergenic | 35.0% |
| ! | TTTCAAAGTTGAAGGAGCAT+TGG | + | chr1_1:68255217-68255236 | None:intergenic | 35.0% |
| ! | AAGTCAAGACAAAGTACTAG+TGG | + | chr1_1:68255768-68255787 | None:intergenic | 35.0% |
| GAAGAGGAAGTGATTATTTG+AGG | + | chr1_1:68255848-68255867 | None:intergenic | 35.0% | |
| ! | TTATGGAAGCTTTTGAGCTA+AGG | + | chr1_1:68255943-68255962 | None:intergenic | 35.0% |
| AGTGCTAACCTTCATTGTTA+TGG | + | chr1_1:68255960-68255979 | None:intergenic | 35.0% | |
| ! | CAAAGCACAGGTTGAAAAAT+TGG | + | chr1_1:68256172-68256191 | None:intergenic | 35.0% |
| !!! | ACCTGTGCTTTGTCTTTTTT+TGG | - | chr1_1:68256180-68256199 | Msa0038770:intron | 35.0% |
| ACCAAAAAAAGACAAAGCAC+AGG | + | chr1_1:68256184-68256203 | None:intergenic | 35.0% | |
| AGTCAAGCAAAAAGCTATGA+AGG | - | chr1_1:68256293-68256312 | Msa0038770:CDS | 35.0% | |
| ! | GGATTAGACAGTCCAAATTT+TGG | + | chr1_1:68256449-68256468 | None:intergenic | 35.0% |
| AACAATTGATGCTACGGATT+AGG | + | chr1_1:68256574-68256593 | None:intergenic | 35.0% | |
| CATGCTGAAATACTTTCAGT+TGG | - | chr1_1:68256747-68256766 | Msa0038770:intron | 35.0% | |
| ! | TCTTTCTTTTCCTCTTTAGC+TGG | + | chr1_1:68256774-68256793 | None:intergenic | 35.0% |
| GGTGTACCATAGAAAATGAA+AGG | + | chr1_1:68256870-68256889 | None:intergenic | 35.0% | |
| TAGATGATGACACAACCATT+AGG | + | chr1_1:68256966-68256985 | None:intergenic | 35.0% | |
| AGGGAAAGAATGAAGAGCTA+GGG | + | chr1_1:68252384-68252403 | None:intergenic | 40.0% | |
| AAGGGAAAGAATGAAGAGCT+AGG | + | chr1_1:68252385-68252404 | None:intergenic | 40.0% | |
| ! | AGCCTGAATTTGAAGCACTT+TGG | - | chr1_1:68252567-68252586 | Msa0038770:CDS | 40.0% |
| TACTTGTAGTGGCTAAGCTA+AGG | - | chr1_1:68253029-68253048 | Msa0038770:intron | 40.0% | |
| GCACGGTAGTATGAATTGTA+TGG | + | chr1_1:68253226-68253245 | None:intergenic | 40.0% | |
| AGGATCCTCTTCAACACTTA+CGG | + | chr1_1:68253248-68253267 | None:intergenic | 40.0% | |
| ! | AGTGTTGAAGAGGATCCTAA+TGG | - | chr1_1:68253250-68253269 | Msa0038770:intron | 40.0% |
| ! | AGTGTGTCGATCATAGTATG+AGG | - | chr1_1:68253458-68253477 | Msa0038770:intron | 40.0% |
| ATGAGGATATTTGCGCTAAG+AGG | + | chr1_1:68253578-68253597 | None:intergenic | 40.0% | |
| ! | CATTCTTTTGTAGCACTTCG+AGG | + | chr1_1:68253631-68253650 | None:intergenic | 40.0% |
| CACTCTAACACTCCTTATAC+AGG | + | chr1_1:68253730-68253749 | None:intergenic | 40.0% | |
| AAGGATTTATCCACCACATG+TGG | - | chr1_1:68253810-68253829 | Msa0038770:intron | 40.0% | |
| !! | CTTTTGATTACCACATGTGG+TGG | + | chr1_1:68253823-68253842 | None:intergenic | 40.0% |
| AGTTTCTCTAATCGCAATCG+TGG | + | chr1_1:68254002-68254021 | None:intergenic | 40.0% | |
| GTGTGGTAATCTAGAAGATG+TGG | + | chr1_1:68254150-68254169 | None:intergenic | 40.0% | |
| AGCTACTTCTCAATCTTGTG+CGG | + | chr1_1:68254176-68254195 | None:intergenic | 40.0% | |
| !! | GTTGAACTCTGTTAGTTTGC+GGG | + | chr1_1:68254417-68254436 | None:intergenic | 40.0% |
| !!! | GATATGAAGCTTTTAGGGTG+GGG | + | chr1_1:68254497-68254516 | None:intergenic | 40.0% |
| !! | CTGATATGAAGCTTTTAGGG+TGG | + | chr1_1:68254499-68254518 | None:intergenic | 40.0% |
| ! | GTGGCTGATATGAAGCTTTT+AGG | + | chr1_1:68254503-68254522 | None:intergenic | 40.0% |
| ! | TTCTGATAACGAGATGGATG+TGG | + | chr1_1:68254525-68254544 | None:intergenic | 40.0% |
| !! | TGTGGTGTTGGTACATCTAT+AGG | + | chr1_1:68254668-68254687 | None:intergenic | 40.0% |
| TTTGATTCATAGGCGGATCT+AGG | - | chr1_1:68254785-68254804 | Msa0038770:intron | 40.0% | |
| GGCTAAAATTGATCGCACAA+AGG | + | chr1_1:68254992-68255011 | None:intergenic | 40.0% | |
| TGTCCTCATTGGTATGGTTA+GGG | + | chr1_1:68255076-68255095 | None:intergenic | 40.0% | |
| TTGTCCTCATTGGTATGGTT+AGG | + | chr1_1:68255077-68255096 | None:intergenic | 40.0% | |
| ACTTTGTCCTTCAGAAAGAG+AGG | + | chr1_1:68255107-68255126 | None:intergenic | 40.0% | |
| ACTTCTTGTAGGTTCAACGA+AGG | - | chr1_1:68255662-68255681 | Msa0038770:intron | 40.0% | |
| TTGTAGGTTCAACGAAGGAA+CGG | - | chr1_1:68255667-68255686 | Msa0038770:intron | 40.0% | |
| ! | AAAGTACTAGTGGTAGTGTG+TGG | + | chr1_1:68255758-68255777 | None:intergenic | 40.0% |
| !! | GAGTTGATGATGATAGAGGA+AGG | + | chr1_1:68255802-68255821 | None:intergenic | 40.0% |
| !! | GGAAGAGTTGATGATGATAG+AGG | + | chr1_1:68255806-68255825 | None:intergenic | 40.0% |
| ATCAATAATCGGGTCATGTG+CGG | - | chr1_1:68256407-68256426 | Msa0038770:CDS | 40.0% | |
| TACTTGTAGTGGCTAAGCTA+AGG | - | chr1_1:68253029-68253048 | Msa0038770:intron | 40.0% | |
| CTTACGGCACTGTTGTAATA+AGG | + | chr1_1:68256930-68256949 | None:intergenic | 40.0% | |
| AGGGGGATTGAAGTGGTAAT+AGG | + | chr1_1:68252365-68252384 | None:intergenic | 45.0% | |
| GGAAAGAATGAAGAGCTAGG+GGG | + | chr1_1:68252382-68252401 | None:intergenic | 45.0% | |
| GGGAAAGAATGAAGAGCTAG+GGG | + | chr1_1:68252383-68252402 | None:intergenic | 45.0% | |
| TTATGGAGGCTACTGAGCTA+AGG | + | chr1_1:68252438-68252457 | None:intergenic | 45.0% | |
| AAAGCTATGAAGGCAGTCTC+TGG | - | chr1_1:68252711-68252730 | Msa0038770:CDS | 45.0% | |
| GCTTAGCCACTACAAGTACT+GGG | + | chr1_1:68253027-68253046 | None:intergenic | 45.0% | |
| AGCTTAGCCACTACAAGTAC+TGG | + | chr1_1:68253028-68253047 | None:intergenic | 45.0% | |
| TTCAGTTGGACCAGCTAAAG+TGG | - | chr1_1:68253075-68253094 | Msa0038770:intron | 45.0% | |
| AGGCTTGCGAGACTATGTAA+GGG | - | chr1_1:68253478-68253497 | Msa0038770:intron | 45.0% | |
| ACTTCTCAATCTTGTGCGGA+GGG | + | chr1_1:68254172-68254191 | None:intergenic | 45.0% | |
| TACTTCTCAATCTTGTGCGG+AGG | + | chr1_1:68254173-68254192 | None:intergenic | 45.0% | |
| GCACAAGATTGAGAAGTAGC+TGG | - | chr1_1:68254175-68254194 | Msa0038770:intron | 45.0% | |
| TAGGTGACAACCCTGTAGTA+TGG | + | chr1_1:68254297-68254316 | None:intergenic | 45.0% | |
| GGGATGATGTTATCGATAGG+TGG | + | chr1_1:68254397-68254416 | None:intergenic | 45.0% | |
| TGCGGGATGATGTTATCGAT+AGG | + | chr1_1:68254400-68254419 | None:intergenic | 45.0% | |
| ! | TGATAACGAGATGGATGTGG+TGG | + | chr1_1:68254522-68254541 | None:intergenic | 45.0% |
| TGGTAGGATCCTTGGTTGAA+AGG | + | chr1_1:68254587-68254606 | None:intergenic | 45.0% | |
| ATTCATAGGCGGATCTAGGT+GGG | - | chr1_1:68254789-68254808 | Msa0038770:intron | 45.0% | |
| GTCCTCATTGGTATGGTTAG+GGG | + | chr1_1:68255075-68255094 | None:intergenic | 45.0% | |
| CACTCTTGTCCTCATTGGTA+TGG | + | chr1_1:68255082-68255101 | None:intergenic | 45.0% | |
| AGGTTCACTCTTGTCCTCAT+TGG | + | chr1_1:68255087-68255106 | None:intergenic | 45.0% | |
| GAGTGAACCTCTCTTTCTGA+AGG | - | chr1_1:68255097-68255116 | Msa0038770:intron | 45.0% | |
| TGTAGGTTCAACGAAGGAAC+GGG | - | chr1_1:68255668-68255687 | Msa0038770:intron | 45.0% | |
| AAGGGAAAGAGGAGTTAGAG+GGG | + | chr1_1:68255887-68255906 | None:intergenic | 45.0% | |
| GAAGGGAAAGAGGAGTTAGA+GGG | + | chr1_1:68255888-68255907 | None:intergenic | 45.0% | |
| AGAAGGGAAAGAGGAGTTAG+AGG | + | chr1_1:68255889-68255908 | None:intergenic | 45.0% | |
| TGAAGGTTAGCACTTTACCC+TGG | - | chr1_1:68255966-68255985 | Msa0038770:intron | 45.0% | |
| AAAGCTATGAAGGCAGTCTC+TGG | - | chr1_1:68252711-68252730 | Msa0038770:CDS | 45.0% | |
| AGATGTGACTTACTGCACAC+TGG | - | chr1_1:68256541-68256560 | Msa0038770:intron | 45.0% | |
| TGGGTCGGTATCTCCTATTA+AGG | + | chr1_1:68256694-68256713 | None:intergenic | 45.0% | |
| GCTTAGCCACTACAAGTACT+GGG | + | chr1_1:68253027-68253046 | None:intergenic | 45.0% | |
| AGCTTAGCCACTACAAGTAC+TGG | + | chr1_1:68253028-68253047 | None:intergenic | 45.0% | |
| TTCAGTTGGACCAGCTAAAG+AGG | - | chr1_1:68253075-68253094 | Msa0038770:intron | 45.0% | |
| AGGATCCTCTTCAACGCTTA+CGG | + | chr1_1:68256946-68256965 | None:intergenic | 45.0% | |
| ! | AGCGTTGAAGAGGATCCTAA+TGG | - | chr1_1:68256948-68256967 | Msa0038770:intron | 45.0% |
| AAGAGCTAGGGGGATTGAAG+TGG | + | chr1_1:68252372-68252391 | None:intergenic | 50.0% | |
| TGGGTCGGTATCTCCTACTA+AGG | + | chr1_1:68253008-68253027 | None:intergenic | 50.0% | |
| TACCGACCCAGTACTTGTAG+TGG | - | chr1_1:68253018-68253037 | Msa0038770:intron | 50.0% | |
| !! | AGCCACTACAAGTACTGGGT+CGG | + | chr1_1:68253023-68253042 | None:intergenic | 50.0% |
| GGTGTACCATAGAGCACGAA+AGG | + | chr1_1:68253175-68253194 | None:intergenic | 50.0% | |
| CCTCTTCAACACTTACGGCA+CGG | + | chr1_1:68253243-68253262 | None:intergenic | 50.0% | |
| GAGGCTTGCGAGACTATGTA+AGG | - | chr1_1:68253477-68253496 | Msa0038770:intron | 50.0% | |
| GCGAGACTATGTAAGGGCTT+TGG | - | chr1_1:68253484-68253503 | Msa0038770:intron | 50.0% | |
| GATTCATAGGCGGATCTAGG+TGG | - | chr1_1:68254788-68254807 | Msa0038770:intron | 50.0% | |
| TTCATAGGCGGATCTAGGTG+GGG | - | chr1_1:68254790-68254809 | Msa0038770:intron | 50.0% | |
| !! | TTGAGATTTTGGGGACGCCA+TGG | + | chr1_1:68254827-68254846 | None:intergenic | 50.0% |
| CACCCCTAACCATACCAATG+AGG | - | chr1_1:68255070-68255089 | Msa0038770:intron | 50.0% | |
| GTAGGTTCAACGAAGGAACG+GGG | - | chr1_1:68255669-68255688 | Msa0038770:intron | 50.0% | |
| AGGGAAAGAGGAGTTAGAGG+GGG | + | chr1_1:68255886-68255905 | None:intergenic | 50.0% | |
| TACCGACCCAGTACTTGTAG+TGG | - | chr1_1:68253018-68253037 | Msa0038770:intron | 50.0% | |
| !! | AGCCACTACAAGTACTGGGT+CGG | + | chr1_1:68253023-68253042 | None:intergenic | 50.0% |
| ! | AAGGCAGTCTCTGGCCTTTC+AGG | - | chr1_1:68252720-68252739 | Msa0038770:CDS | 55.0% |
| !! | CCGTGCCGTAAGTGTTGAAG+AGG | - | chr1_1:68253240-68253259 | Msa0038770:intron | 55.0% |
| TCAATCTTGTGCGGAGGGTG+TGG | + | chr1_1:68254167-68254186 | None:intergenic | 55.0% | |
| GGTGAGAGTGGTGAGGCTAT+GGG | + | chr1_1:68254476-68254495 | None:intergenic | 55.0% | |
| !!! | CTTTTAGGGTGGGGTGAGAG+TGG | + | chr1_1:68254488-68254507 | None:intergenic | 55.0% |
| ! | AAGGCAGTCTCTGGCCTTTC+AGG | - | chr1_1:68252720-68252739 | Msa0038770:CDS | 55.0% |
| !! | CAGTGCCGTAAGCGTTGAAG+AGG | - | chr1_1:68256938-68256957 | Msa0038770:intron | 55.0% |
| AGTGGTGAGGCTATGGGCGT+GGG | + | chr1_1:68254470-68254489 | None:intergenic | 60.0% | |
| GGGTGAGAGTGGTGAGGCTA+TGG | + | chr1_1:68254477-68254496 | None:intergenic | 60.0% | |
| ATCTAGGTGGGGACTGGGGA+TGG | - | chr1_1:68254801-68254820 | Msa0038770:intron | 60.0% | |
| CGTGGGAGGAGAGCAGCTGA+GGG | + | chr1_1:68254453-68254472 | None:intergenic | 65.0% | |
| GAGTGGTGAGGCTATGGGCG+TGG | + | chr1_1:68254471-68254490 | None:intergenic | 65.0% | |
| AGGGTGGGGTGAGAGTGGTG+AGG | + | chr1_1:68254483-68254502 | None:intergenic | 65.0% | |
| AGGCGGATCTAGGTGGGGAC+TGG | - | chr1_1:68254795-68254814 | Msa0038770:intron | 65.0% | |
| GGCGGATCTAGGTGGGGACT+GGG | - | chr1_1:68254796-68254815 | Msa0038770:intron | 65.0% | |
| GCGGATCTAGGTGGGGACTG+GGG | - | chr1_1:68254797-68254816 | Msa0038770:intron | 65.0% | |
| GCGTGGGAGGAGAGCAGCTG+AGG | + | chr1_1:68254454-68254473 | None:intergenic | 70.0% | |
| GGTGAGGCTATGGGCGTGGG+AGG | + | chr1_1:68254467-68254486 | None:intergenic | 70.0% | |
| GTGGGGACTGGGGATGGCCA+TGG | - | chr1_1:68254807-68254826 | Msa0038770:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 68252309 | 68257186 | 68252309 | ID=Msa0038770;Name=Msa0038770 |
| chr1_1 | mRNA | 68252309 | 68257186 | 68252309 | ID=Msa0038770-mRNA-1;Parent=Msa0038770;Name=Msa0038770-mRNA-1;_AED=0.25;_eAED=0.25;_QI=153|0.75|0.8|1|1|1|5|200|258 |
| chr1_1 | exon | 68252309 | 68252846 | 68252309 | ID=Msa0038770-mRNA-1:exon:22229;Parent=Msa0038770-mRNA-1 |
| chr1_1 | exon | 68253162 | 68253237 | 68253162 | ID=Msa0038770-mRNA-1:exon:22228;Parent=Msa0038770-mRNA-1 |
| chr1_1 | exon | 68256249 | 68256529 | 68256249 | ID=Msa0038770-mRNA-1:exon:22227;Parent=Msa0038770-mRNA-1 |
| chr1_1 | exon | 68256754 | 68256829 | 68256754 | ID=Msa0038770-mRNA-1:exon:22226;Parent=Msa0038770-mRNA-1 |
| chr1_1 | exon | 68257028 | 68257186 | 68257028 | ID=Msa0038770-mRNA-1:exon:22225;Parent=Msa0038770-mRNA-1 |
| chr1_1 | five_prime_UTR | 68257034 | 68257186 | 68257034 | ID=Msa0038770-mRNA-1:five_prime_utr;Parent=Msa0038770-mRNA-1 |
| chr1_1 | CDS | 68257028 | 68257033 | 68257028 | ID=Msa0038770-mRNA-1:cds;Parent=Msa0038770-mRNA-1 |
| chr1_1 | CDS | 68256754 | 68256829 | 68256754 | ID=Msa0038770-mRNA-1:cds;Parent=Msa0038770-mRNA-1 |
| chr1_1 | CDS | 68256249 | 68256529 | 68256249 | ID=Msa0038770-mRNA-1:cds;Parent=Msa0038770-mRNA-1 |
| chr1_1 | CDS | 68253162 | 68253237 | 68253162 | ID=Msa0038770-mRNA-1:cds;Parent=Msa0038770-mRNA-1 |
| chr1_1 | CDS | 68252509 | 68252846 | 68252509 | ID=Msa0038770-mRNA-1:cds;Parent=Msa0038770-mRNA-1 |
| chr1_1 | three_prime_UTR | 68252309 | 68252508 | 68252309 | ID=Msa0038770-mRNA-1:three_prime_utr;Parent=Msa0038770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
