Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390840 | XP_003593591.1 | 87.931 | 174 | 20 | 1 | 1 | 173 | 1 | 174 | 1.06e-106 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390840 | sp|F4JIJ7|BH162_ARATH | 42.222 | 180 | 92 | 5 | 3 | 170 | 7 | 186 | 3.22e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390840 | G7IPU7 | 87.931 | 174 | 20 | 1 | 1 | 173 | 1 | 174 | 5.07e-107 | 312 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1390840 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0418000 | Msa1390840 | 0.824091 | 9.739545e-54 | -8.615850e-47 |
| Msa0312850 | Msa1390840 | 0.970214 | 2.807837e-131 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390840 | MtrunA17_Chr2g0282341 | 88.806 | 134 | 15 | 0 | 40 | 173 | 3 | 136 | 2.92e-85 | 246 |
| Msa1390840 | MtrunA17_Chr4g0040201 | 42.541 | 181 | 84 | 7 | 3 | 170 | 7 | 180 | 1.54e-37 | 128 |
| Msa1390840 | MtrunA17_Chr2g0324511 | 42.105 | 152 | 83 | 2 | 6 | 152 | 12 | 163 | 2.86e-37 | 126 |
| Msa1390840 | MtrunA17_Chr2g0324521 | 40.179 | 112 | 67 | 0 | 41 | 152 | 5 | 116 | 1.33e-25 | 95.5 |
| Msa1390840 | MtrunA17_Chr2g0324571 | 36.842 | 114 | 70 | 1 | 41 | 152 | 5 | 118 | 7.85e-24 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390840 | AT4G20970.1 | 42.222 | 180 | 92 | 5 | 3 | 170 | 7 | 186 | 3.28e-41 | 137 |
| Msa1390840 | AT5G51780.1 | 28.859 | 149 | 98 | 4 | 16 | 156 | 10 | 158 | 8.91e-13 | 63.5 |
| Msa1390840 | AT5G51780.2 | 28.859 | 149 | 98 | 4 | 16 | 156 | 33 | 181 | 1.33e-12 | 63.5 |
| Msa1390840 | AT1G10585.1 | 27.429 | 175 | 117 | 4 | 2 | 173 | 9 | 176 | 1.07e-11 | 60.8 |
Find 29 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTAGGTAGGAGAATT+TGG | 0.194372 | tig0021393:+22259 | Msa1390840:intron |
| TTAGAGGTTGTTCTAATAAC+TGG | 0.223327 | tig0021393:+21427 | Msa1390840:CDS |
| TAGCGAGTCCTCCAATTTCT+AGG | 0.253617 | tig0021393:+22460 | Msa1390840:three_prime_UTR |
| TCTGCCTCATCAAACTTCTA+AGG | 0.272548 | tig0021393:+20946 | Msa1390840:CDS |
| TATTCTCAATGCTACTTATA+AGG | 0.304686 | tig0021393:+21510 | Msa1390840:CDS |
| AAAATTAAGATACAACAAAT+TGG | 0.306857 | tig0021393:+21397 | Msa1390840:CDS |
| TTTCTATTCATATTCACATT+TGG | 0.311695 | tig0021393:-21349 | None:intergenic |
| ACAAATTGGTTTAGTCTTAG+AGG | 0.319445 | tig0021393:+21411 | Msa1390840:CDS |
| ATAATATTTATGTTGGTGTT+TGG | 0.349954 | tig0021393:+22532 | Msa1390840:three_prime_UTR |
| CTGTCAATTCTGGATGAACT+AGG | 0.361485 | tig0021393:-20860 | None:intergenic |
| ATATACACGATGAAAATGTT+TGG | 0.422480 | tig0021393:+22406 | Msa1390840:three_prime_UTR |
| GGTTGTTCTAATAACTGGAT+TGG | 0.435753 | tig0021393:+21432 | Msa1390840:CDS |
| CTTCGTGTTCTTCATGAAGA+AGG | 0.454763 | tig0021393:+21481 | Msa1390840:CDS |
| ATAAACTTCTTCAATCTCTC+AGG | 0.467349 | tig0021393:-22301 | None:intergenic |
| TTTCCATTCAATACACTGCC+AGG | 0.483911 | tig0021393:+21549 | Msa1390840:CDS |
| AGCGAGTCCTCCAATTTCTA+GGG | 0.484622 | tig0021393:+22461 | Msa1390840:three_prime_UTR |
| TTGACAGAAAATTCATTGAA+AGG | 0.497350 | tig0021393:+20876 | Msa1390840:CDS |
| TGTCAATTCTGGATGAACTA+GGG | 0.529487 | tig0021393:-20859 | None:intergenic |
| GAAAAGAAGAACTTTCTACT+AGG | 0.532951 | tig0021393:+21316 | Msa1390840:CDS |
| GATCAACTTGGAGAAAATGA+AGG | 0.550998 | tig0021393:+21294 | Msa1390840:CDS |
| TTACCTGGCAGTGTATTGAA+TGG | 0.573100 | tig0021393:-21552 | None:intergenic |
| GCATTGTTACACACTCTGAA+AGG | 0.598439 | tig0021393:-22344 | None:intergenic |
| AAAGAAATTACAGATCAACT+TGG | 0.602314 | tig0021393:+21282 | Msa1390840:CDS |
| ATGAATAGAAACAAGAACAT+GGG | 0.625623 | tig0021393:+21361 | Msa1390840:CDS |
| TATGAATAGAAACAAGAACA+TGG | 0.630359 | tig0021393:+21360 | Msa1390840:CDS |
| GAAGCCTTAGAAGTTTGATG+AGG | 0.639591 | tig0021393:-20950 | None:intergenic |
| TCTGATGCAGGCAATTTCAG+CGG | 0.656079 | tig0021393:+21228 | Msa1390840:intron |
| CTTCTTCATGAAGAACACGA+AGG | 0.679799 | tig0021393:-21480 | None:intergenic |
| TTCAGCGGCAGATCAGCTCG+AGG | 0.700026 | tig0021393:+21243 | Msa1390840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTATTCATAAAATTATA+TGG | + | tig0021393:22143-22162 | Msa1390840:intron | 10.0% |
| !! | AAGTTATTCATAAAATTATA+TGG | + | tig0021393:22143-22162 | Msa1390840:intron | 10.0% |
| !! | AAAAAAAAATTAAGAGAGAA+AGG | - | tig0021393:20979-20998 | None:intergenic | 15.0% |
| !!! | ATTTGTTGTATCTTAATTTT+TGG | - | tig0021393:21397-21416 | None:intergenic | 15.0% |
| !! | AAAATTAAGATACAACAAAT+TGG | + | tig0021393:21397-21416 | Msa1390840:CDS | 15.0% |
| !!! | GCATTTTATAATATTTATGT+TGG | + | tig0021393:22525-22544 | Msa1390840:three_prime_UTR | 15.0% |
| !! | AAAAAAAAATTAAGAGAGAA+AGG | - | tig0021393:20979-20998 | None:intergenic | 15.0% |
| !!! | ATTTGTTGTATCTTAATTTT+TGG | - | tig0021393:21397-21416 | None:intergenic | 15.0% |
| !! | AAAATTAAGATACAACAAAT+TGG | + | tig0021393:21397-21416 | Msa1390840:CDS | 15.0% |
| !!! | GCATTTTATAATATTTATGT+TGG | + | tig0021393:22525-22544 | Msa1390840:three_prime_UTR | 15.0% |
| !! | GAAAAAAATAGAATTAGTGA+CGG | + | tig0021393:21047-21066 | Msa1390840:intron | 20.0% |
| !! | TACAAAATATAGTGACATTA+AGG | - | tig0021393:21114-21133 | None:intergenic | 20.0% |
| !!! | TAATTTAATTTATCTGATGC+AGG | + | tig0021393:21216-21235 | Msa1390840:intron | 20.0% |
| !! | TTTCTATTCATATTCACATT+TGG | - | tig0021393:21352-21371 | None:intergenic | 20.0% |
| !!! | CATTTAGTGAATAATTTTGT+TGG | - | tig0021393:21711-21730 | None:intergenic | 20.0% |
| !! | AATCGTAATTAAATATGAGT+CGG | - | tig0021393:21805-21824 | None:intergenic | 20.0% |
| !! | TTACTTGACAAATGAAATAA+AGG | + | tig0021393:21909-21928 | Msa1390840:intron | 20.0% |
| !!! | GAGTTGATTTCATTTTTTAA+GGG | + | tig0021393:21931-21950 | Msa1390840:intron | 20.0% |
| !!! | AACTGATTTTTATAATGTGT+TGG | + | tig0021393:21963-21982 | Msa1390840:intron | 20.0% |
| !! | ATGAATATTTGAACATCAAT+AGG | + | tig0021393:22210-22229 | Msa1390840:intron | 20.0% |
| !!! | CTAATTGCATTGTTTTATTT+AGG | + | tig0021393:22246-22265 | Msa1390840:intron | 20.0% |
| !!! | ATAATATTTATGTTGGTGTT+TGG | + | tig0021393:22532-22551 | Msa1390840:three_prime_UTR | 20.0% |
| !! | GAAAAAAATAGAATTAGTGA+CGG | + | tig0021393:21047-21066 | Msa1390840:intron | 20.0% |
| !! | TACAAAATATAGTGACATTA+AGG | - | tig0021393:21114-21133 | None:intergenic | 20.0% |
| !!! | TAATTTAATTTATCTGATGC+AGG | + | tig0021393:21216-21235 | Msa1390840:intron | 20.0% |
| !! | TTTCTATTCATATTCACATT+TGG | - | tig0021393:21352-21371 | None:intergenic | 20.0% |
| !!! | CATTTAGTGAATAATTTTGT+TGG | - | tig0021393:21711-21730 | None:intergenic | 20.0% |
| !! | AATCGTAATTAAATATGAGT+CGG | - | tig0021393:21805-21824 | None:intergenic | 20.0% |
| !! | TTACTTGACAAATGAAATAA+AGG | + | tig0021393:21909-21928 | Msa1390840:intron | 20.0% |
| !!! | GAGTTGATTTCATTTTTTAA+GGG | + | tig0021393:21931-21950 | Msa1390840:intron | 20.0% |
| !!! | AACTGATTTTTATAATGTGT+TGG | + | tig0021393:21963-21982 | Msa1390840:intron | 20.0% |
| !! | ATGAATATTTGAACATCAAT+AGG | + | tig0021393:22210-22229 | Msa1390840:intron | 20.0% |
| !!! | CTAATTGCATTGTTTTATTT+AGG | + | tig0021393:22246-22265 | Msa1390840:intron | 20.0% |
| !!! | ATAATATTTATGTTGGTGTT+TGG | + | tig0021393:22532-22551 | Msa1390840:three_prime_UTR | 20.0% |
| !! | AATGAATTTTCTGTCAATTC+TGG | - | tig0021393:20873-20892 | None:intergenic | 25.0% |
| ! | TTGACAGAAAATTCATTGAA+AGG | + | tig0021393:20876-20895 | Msa1390840:CDS | 25.0% |
| !! | CACTATATTTTGTAAAACGA+CGG | + | tig0021393:21120-21139 | Msa1390840:intron | 25.0% |
| ! | AAAGAAATTACAGATCAACT+TGG | + | tig0021393:21282-21301 | Msa1390840:CDS | 25.0% |
| ! | TATGAATAGAAACAAGAACA+TGG | + | tig0021393:21360-21379 | Msa1390840:CDS | 25.0% |
| ! | ATGAATAGAAACAAGAACAT+GGG | + | tig0021393:21361-21380 | Msa1390840:CDS | 25.0% |
| !! | TATTCTCAATGCTACTTATA+AGG | + | tig0021393:21510-21529 | Msa1390840:CDS | 25.0% |
| ! | GTAACAATTTATGATTTACC+TGG | - | tig0021393:21570-21589 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTTGCACATTTG+AGG | - | tig0021393:21672-21691 | None:intergenic | 25.0% |
| !! | TAGTGAATAATTTTGTTGGT+AGG | - | tig0021393:21707-21726 | None:intergenic | 25.0% |
| !!! | GGAGTTGATTTCATTTTTTA+AGG | + | tig0021393:21930-21949 | Msa1390840:intron | 25.0% |
| !!! | TTGCATTGTTTTATTTAGGT+AGG | + | tig0021393:22250-22269 | Msa1390840:intron | 25.0% |
| ! | TTTATTTAGGTAGGAGAATT+TGG | + | tig0021393:22259-22278 | Msa1390840:intron | 25.0% |
| ! | ATATACACGATGAAAATGTT+TGG | + | tig0021393:22406-22425 | Msa1390840:three_prime_UTR | 25.0% |
| !! | AATGAATTTTCTGTCAATTC+TGG | - | tig0021393:20873-20892 | None:intergenic | 25.0% |
| ! | TTGACAGAAAATTCATTGAA+AGG | + | tig0021393:20876-20895 | Msa1390840:CDS | 25.0% |
| !! | CACTATATTTTGTAAAACGA+CGG | + | tig0021393:21120-21139 | Msa1390840:intron | 25.0% |
| ! | AAAGAAATTACAGATCAACT+TGG | + | tig0021393:21282-21301 | Msa1390840:CDS | 25.0% |
| ! | TATGAATAGAAACAAGAACA+TGG | + | tig0021393:21360-21379 | Msa1390840:CDS | 25.0% |
| ! | ATGAATAGAAACAAGAACAT+GGG | + | tig0021393:21361-21380 | Msa1390840:CDS | 25.0% |
| !! | TATTCTCAATGCTACTTATA+AGG | + | tig0021393:21510-21529 | Msa1390840:CDS | 25.0% |
| ! | GTAACAATTTATGATTTACC+TGG | - | tig0021393:21570-21589 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTTGCACATTTG+AGG | - | tig0021393:21672-21691 | None:intergenic | 25.0% |
| !! | TAGTGAATAATTTTGTTGGT+AGG | - | tig0021393:21707-21726 | None:intergenic | 25.0% |
| !!! | GGAGTTGATTTCATTTTTTA+AGG | + | tig0021393:21930-21949 | Msa1390840:intron | 25.0% |
| !!! | TTGCATTGTTTTATTTAGGT+AGG | + | tig0021393:22250-22269 | Msa1390840:intron | 25.0% |
| ! | TTTATTTAGGTAGGAGAATT+TGG | + | tig0021393:22259-22278 | Msa1390840:intron | 25.0% |
| ! | ATATACACGATGAAAATGTT+TGG | + | tig0021393:22406-22425 | Msa1390840:three_prime_UTR | 25.0% |
| GAAAAGAAGAACTTTCTACT+AGG | + | tig0021393:21316-21335 | Msa1390840:CDS | 30.0% | |
| !! | ACAAATTGGTTTAGTCTTAG+AGG | + | tig0021393:21411-21430 | Msa1390840:CDS | 30.0% |
| TTAGAGGTTGTTCTAATAAC+TGG | + | tig0021393:21427-21446 | Msa1390840:CDS | 30.0% | |
| ATATGAAATCAAGTGCAAGA+AGG | + | tig0021393:21615-21634 | Msa1390840:intron | 30.0% | |
| ! | CAAACTTGAGTTTTACCTAA+GGG | - | tig0021393:21778-21797 | None:intergenic | 30.0% |
| ! | TCAAACTTGAGTTTTACCTA+AGG | - | tig0021393:21779-21798 | None:intergenic | 30.0% |
| TGATGCTAATAATATTGCAC+AGG | - | tig0021393:21877-21896 | None:intergenic | 30.0% | |
| ! | TCGACCAAATATTTTCTCAA+AGG | + | tig0021393:22019-22038 | Msa1390840:intron | 30.0% |
| ! | CGACCAAATATTTTCTCAAA+GGG | + | tig0021393:22020-22039 | Msa1390840:intron | 30.0% |
| ! | GACCAAATATTTTCTCAAAG+GGG | + | tig0021393:22021-22040 | Msa1390840:intron | 30.0% |
| ! | TACCCCTTTGAGAAAATATT+TGG | - | tig0021393:22026-22045 | None:intergenic | 30.0% |
| TCAATAACATCACACTAATG+GGG | - | tig0021393:22095-22114 | None:intergenic | 30.0% | |
| GTCAATAACATCACACTAAT+GGG | - | tig0021393:22096-22115 | None:intergenic | 30.0% | |
| TGTCAATAACATCACACTAA+TGG | - | tig0021393:22097-22116 | None:intergenic | 30.0% | |
| CATAAAATTATATGGCCACT+TGG | + | tig0021393:22151-22170 | Msa1390840:intron | 30.0% | |
| ATAAACTTCTTCAATCTCTC+AGG | - | tig0021393:22304-22323 | None:intergenic | 30.0% | |
| !! | CAAACTTTTTCCCTAGAAAT+TGG | - | tig0021393:22474-22493 | None:intergenic | 30.0% |
| GAAAAGAAGAACTTTCTACT+AGG | + | tig0021393:21316-21335 | Msa1390840:CDS | 30.0% | |
| !! | ACAAATTGGTTTAGTCTTAG+AGG | + | tig0021393:21411-21430 | Msa1390840:CDS | 30.0% |
| TTAGAGGTTGTTCTAATAAC+TGG | + | tig0021393:21427-21446 | Msa1390840:CDS | 30.0% | |
| ATATGAAATCAAGTGCAAGA+AGG | + | tig0021393:21615-21634 | Msa1390840:intron | 30.0% | |
| ! | CAAACTTGAGTTTTACCTAA+GGG | - | tig0021393:21778-21797 | None:intergenic | 30.0% |
| ! | TCAAACTTGAGTTTTACCTA+AGG | - | tig0021393:21779-21798 | None:intergenic | 30.0% |
| TGATGCTAATAATATTGCAC+AGG | - | tig0021393:21877-21896 | None:intergenic | 30.0% | |
| ! | TCGACCAAATATTTTCTCAA+AGG | + | tig0021393:22019-22038 | Msa1390840:intron | 30.0% |
| ! | CGACCAAATATTTTCTCAAA+GGG | + | tig0021393:22020-22039 | Msa1390840:intron | 30.0% |
| ! | GACCAAATATTTTCTCAAAG+GGG | + | tig0021393:22021-22040 | Msa1390840:intron | 30.0% |
| ! | TACCCCTTTGAGAAAATATT+TGG | - | tig0021393:22026-22045 | None:intergenic | 30.0% |
| TCAATAACATCACACTAATG+GGG | - | tig0021393:22095-22114 | None:intergenic | 30.0% | |
| GTCAATAACATCACACTAAT+GGG | - | tig0021393:22096-22115 | None:intergenic | 30.0% | |
| TGTCAATAACATCACACTAA+TGG | - | tig0021393:22097-22116 | None:intergenic | 30.0% | |
| CATAAAATTATATGGCCACT+TGG | + | tig0021393:22151-22170 | Msa1390840:intron | 30.0% | |
| ATAAACTTCTTCAATCTCTC+AGG | - | tig0021393:22304-22323 | None:intergenic | 30.0% | |
| !! | CAAACTTTTTCCCTAGAAAT+TGG | - | tig0021393:22474-22493 | None:intergenic | 30.0% |
| TGTCAATTCTGGATGAACTA+GGG | - | tig0021393:20862-20881 | None:intergenic | 35.0% | |
| AAGCATCTAAGAGAGAAGAA+AGG | - | tig0021393:21005-21024 | None:intergenic | 35.0% | |
| ! | TTTTGTAAAACGACGGATGT+TGG | + | tig0021393:21127-21146 | Msa1390840:intron | 35.0% |
| GATCAACTTGGAGAAAATGA+AGG | + | tig0021393:21294-21313 | Msa1390840:CDS | 35.0% | |
| GGTTGTTCTAATAACTGGAT+TGG | + | tig0021393:21432-21451 | Msa1390840:CDS | 35.0% | |
| GTGTGATGTTATTGACAACA+TGG | + | tig0021393:22100-22119 | Msa1390840:intron | 35.0% | |
| !! | ACTTTTTCCCTAGAAATTGG+AGG | - | tig0021393:22471-22490 | None:intergenic | 35.0% |
| TGTCAATTCTGGATGAACTA+GGG | - | tig0021393:20862-20881 | None:intergenic | 35.0% | |
| AAGCATCTAAGAGAGAAGAA+AGG | - | tig0021393:21005-21024 | None:intergenic | 35.0% | |
| ! | TTTTGTAAAACGACGGATGT+TGG | + | tig0021393:21127-21146 | Msa1390840:intron | 35.0% |
| GATCAACTTGGAGAAAATGA+AGG | + | tig0021393:21294-21313 | Msa1390840:CDS | 35.0% | |
| GGTTGTTCTAATAACTGGAT+TGG | + | tig0021393:21432-21451 | Msa1390840:CDS | 35.0% | |
| GTGTGATGTTATTGACAACA+TGG | + | tig0021393:22100-22119 | Msa1390840:intron | 35.0% | |
| !! | ACTTTTTCCCTAGAAATTGG+AGG | - | tig0021393:22471-22490 | None:intergenic | 35.0% |
| CTGTCAATTCTGGATGAACT+AGG | - | tig0021393:20863-20882 | None:intergenic | 40.0% | |
| TCTGCCTCATCAAACTTCTA+AGG | + | tig0021393:20946-20965 | Msa1390840:CDS | 40.0% | |
| GAAGCCTTAGAAGTTTGATG+AGG | - | tig0021393:20953-20972 | None:intergenic | 40.0% | |
| CTTCTTCATGAAGAACACGA+AGG | - | tig0021393:21483-21502 | None:intergenic | 40.0% | |
| CTTCGTGTTCTTCATGAAGA+AGG | + | tig0021393:21481-21500 | Msa1390840:CDS | 40.0% | |
| TTTCCATTCAATACACTGCC+AGG | + | tig0021393:21549-21568 | Msa1390840:CDS | 40.0% | |
| TTACCTGGCAGTGTATTGAA+TGG | - | tig0021393:21555-21574 | None:intergenic | 40.0% | |
| GTAAATGTCTATGTGCCCTT+AGG | + | tig0021393:21760-21779 | Msa1390840:intron | 40.0% | |
| TTGATGCAACTCATACCAAG+TGG | - | tig0021393:22169-22188 | None:intergenic | 40.0% | |
| CTTGGTATGAGTTGCATCAA+AGG | + | tig0021393:22169-22188 | Msa1390840:intron | 40.0% | |
| GCATTGTTACACACTCTGAA+AGG | - | tig0021393:22347-22366 | None:intergenic | 40.0% | |
| CTGTCAATTCTGGATGAACT+AGG | - | tig0021393:20863-20882 | None:intergenic | 40.0% | |
| TCTGCCTCATCAAACTTCTA+AGG | + | tig0021393:20946-20965 | Msa1390840:CDS | 40.0% | |
| GAAGCCTTAGAAGTTTGATG+AGG | - | tig0021393:20953-20972 | None:intergenic | 40.0% | |
| CTTCTTCATGAAGAACACGA+AGG | - | tig0021393:21483-21502 | None:intergenic | 40.0% | |
| CTTCGTGTTCTTCATGAAGA+AGG | + | tig0021393:21481-21500 | Msa1390840:CDS | 40.0% | |
| TTTCCATTCAATACACTGCC+AGG | + | tig0021393:21549-21568 | Msa1390840:CDS | 40.0% | |
| TTACCTGGCAGTGTATTGAA+TGG | - | tig0021393:21555-21574 | None:intergenic | 40.0% | |
| GTAAATGTCTATGTGCCCTT+AGG | + | tig0021393:21760-21779 | Msa1390840:intron | 40.0% | |
| TTGATGCAACTCATACCAAG+TGG | - | tig0021393:22169-22188 | None:intergenic | 40.0% | |
| CTTGGTATGAGTTGCATCAA+AGG | + | tig0021393:22169-22188 | Msa1390840:intron | 40.0% | |
| GCATTGTTACACACTCTGAA+AGG | - | tig0021393:22347-22366 | None:intergenic | 40.0% | |
| TCTGATGCAGGCAATTTCAG+CGG | + | tig0021393:21228-21247 | Msa1390840:intron | 45.0% | |
| TAGCACATGACCTCGAAGTT+AGG | + | tig0021393:21644-21663 | Msa1390840:intron | 45.0% | |
| AGCACATGACCTCGAAGTTA+GGG | + | tig0021393:21645-21664 | Msa1390840:intron | 45.0% | |
| TAGCGAGTCCTCCAATTTCT+AGG | + | tig0021393:22460-22479 | Msa1390840:three_prime_UTR | 45.0% | |
| AGCGAGTCCTCCAATTTCTA+GGG | + | tig0021393:22461-22480 | Msa1390840:three_prime_UTR | 45.0% | |
| TCTGATGCAGGCAATTTCAG+CGG | + | tig0021393:21228-21247 | Msa1390840:intron | 45.0% | |
| TAGCACATGACCTCGAAGTT+AGG | + | tig0021393:21644-21663 | Msa1390840:intron | 45.0% | |
| AGCACATGACCTCGAAGTTA+GGG | + | tig0021393:21645-21664 | Msa1390840:intron | 45.0% | |
| TAGCGAGTCCTCCAATTTCT+AGG | + | tig0021393:22460-22479 | Msa1390840:three_prime_UTR | 45.0% | |
| AGCGAGTCCTCCAATTTCTA+GGG | + | tig0021393:22461-22480 | Msa1390840:three_prime_UTR | 45.0% | |
| !!! | TATTTTCTTTTTTTTTTTAA+TGG | + | tig0021393:21150-21169 | Msa1390840:intron | 5.0% |
| !! | ATTATATGATTATTATTATA+AGG | + | tig0021393:21841-21860 | Msa1390840:intron | 5.0% |
| !! | TTATATGATTATTATTATAA+GGG | + | tig0021393:21842-21861 | Msa1390840:intron | 5.0% |
| !!! | TATTTTCTTTTTTTTTTTAA+TGG | + | tig0021393:21150-21169 | Msa1390840:intron | 5.0% |
| !! | ATTATATGATTATTATTATA+AGG | + | tig0021393:21841-21860 | Msa1390840:intron | 5.0% |
| !! | TTATATGATTATTATTATAA+GGG | + | tig0021393:21842-21861 | Msa1390840:intron | 5.0% |
| GCACATGACCTCGAAGTTAG+GGG | + | tig0021393:21646-21665 | Msa1390840:intron | 50.0% | |
| ! | ATTTGAGGCCCCTAACTTCG+AGG | - | tig0021393:21657-21676 | None:intergenic | 50.0% |
| GCACATGACCTCGAAGTTAG+GGG | + | tig0021393:21646-21665 | Msa1390840:intron | 50.0% | |
| ! | ATTTGAGGCCCCTAACTTCG+AGG | - | tig0021393:21657-21676 | None:intergenic | 50.0% |
| TTCAGCGGCAGATCAGCTCG+AGG | + | tig0021393:21243-21262 | Msa1390840:CDS | 60.0% | |
| TTCAGCGGCAGATCAGCTCG+AGG | + | tig0021393:21243-21262 | Msa1390840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021393 | gene | 20848 | 22561 | 20848 | ID=Msa1390840;Name=Msa1390840 |
| tig0021393 | mRNA | 20848 | 22561 | 20848 | ID=Msa1390840-mRNA-1;Parent=Msa1390840;Name=Msa1390840-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0.66|1|1|1|3|225|173 |
| tig0021393 | exon | 20848 | 20967 | 20848 | ID=Msa1390840-mRNA-1:exon:12464;Parent=Msa1390840-mRNA-1 |
| tig0021393 | exon | 21238 | 21570 | 21238 | ID=Msa1390840-mRNA-1:exon:12465;Parent=Msa1390840-mRNA-1 |
| tig0021393 | exon | 22268 | 22561 | 22268 | ID=Msa1390840-mRNA-1:exon:12466;Parent=Msa1390840-mRNA-1 |
| tig0021393 | CDS | 20848 | 20967 | 20848 | ID=Msa1390840-mRNA-1:cds;Parent=Msa1390840-mRNA-1 |
| tig0021393 | CDS | 21238 | 21570 | 21238 | ID=Msa1390840-mRNA-1:cds;Parent=Msa1390840-mRNA-1 |
| tig0021393 | CDS | 22268 | 22336 | 22268 | ID=Msa1390840-mRNA-1:cds;Parent=Msa1390840-mRNA-1 |
| tig0021393 | three_prime_UTR | 22337 | 22561 | 22337 | ID=Msa1390840-mRNA-1:three_prime_utr;Parent=Msa1390840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
