Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312850 | XP_003593591.1 | 87.931 | 174 | 20 | 1 | 1 | 173 | 1 | 174 | 1.06e-106 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312850 | sp|F4JIJ7|BH162_ARATH | 42.222 | 180 | 92 | 5 | 3 | 170 | 7 | 186 | 3.22e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0312850 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045650 | Msa0312850 | 0.801087 | 1.062426e-48 | -8.615850e-47 |
| Msa0191040 | Msa0312850 | 0.803114 | 4.067375e-49 | -8.615850e-47 |
| Msa0233340 | Msa0312850 | 0.803161 | 3.977444e-49 | -8.615850e-47 |
| Msa0311690 | Msa0312850 | 0.803550 | 3.304513e-49 | -8.615850e-47 |
| Msa0312850 | Msa0418000 | 0.827628 | 1.408861e-54 | -8.615850e-47 |
| Msa0312850 | Msa0981010 | 0.819162 | 1.342634e-52 | -8.615850e-47 |
| Msa0312850 | Msa1009000 | 0.807715 | 4.415058e-50 | -8.615850e-47 |
| Msa0312850 | Msa1390840 | 0.970214 | 2.807837e-131 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312850 | MtrunA17_Chr2g0282341 | 88.806 | 134 | 15 | 0 | 40 | 173 | 3 | 136 | 2.92e-85 | 246 |
| Msa0312850 | MtrunA17_Chr4g0040201 | 42.541 | 181 | 84 | 7 | 3 | 170 | 7 | 180 | 1.54e-37 | 128 |
| Msa0312850 | MtrunA17_Chr2g0324511 | 42.105 | 152 | 83 | 2 | 6 | 152 | 12 | 163 | 2.86e-37 | 126 |
| Msa0312850 | MtrunA17_Chr2g0324521 | 40.179 | 112 | 67 | 0 | 41 | 152 | 5 | 116 | 1.33e-25 | 95.5 |
| Msa0312850 | MtrunA17_Chr2g0324571 | 36.842 | 114 | 70 | 1 | 41 | 152 | 5 | 118 | 7.85e-24 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312850 | AT4G20970.1 | 42.222 | 180 | 92 | 5 | 3 | 170 | 7 | 186 | 3.28e-41 | 137 |
| Msa0312850 | AT5G51780.1 | 28.859 | 149 | 98 | 4 | 16 | 156 | 10 | 158 | 8.91e-13 | 63.5 |
| Msa0312850 | AT5G51780.2 | 28.859 | 149 | 98 | 4 | 16 | 156 | 33 | 181 | 1.33e-12 | 63.5 |
| Msa0312850 | AT1G10585.1 | 27.429 | 175 | 117 | 4 | 2 | 173 | 9 | 176 | 1.07e-11 | 60.8 |
Find 29 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTAGGTAGGAGAATT+TGG | 0.194372 | 2_4:-8050636 | Msa0312850:intron |
| TTAGAGGTTGTTCTAATAAC+TGG | 0.223327 | 2_4:-8051468 | Msa0312850:CDS |
| TAGCGAGTCCTCCAATTTCT+AGG | 0.253617 | 2_4:-8050435 | Msa0312850:three_prime_UTR |
| TCTGCCTCATCAAACTTCTA+AGG | 0.272548 | 2_4:-8051949 | Msa0312850:intron |
| TATTCTCAATGCTACTTATA+AGG | 0.304686 | 2_4:-8051385 | Msa0312850:CDS |
| AAAATTAAGATACAACAAAT+TGG | 0.306857 | 2_4:-8051498 | Msa0312850:CDS |
| TTTCTATTCATATTCACATT+TGG | 0.311695 | 2_4:+8051546 | None:intergenic |
| ACAAATTGGTTTAGTCTTAG+AGG | 0.319445 | 2_4:-8051484 | Msa0312850:CDS |
| ATAATATTTATGTTGGTGTT+TGG | 0.349954 | 2_4:-8050363 | Msa0312850:three_prime_UTR |
| CTGTCAATTCTGGATGAACT+AGG | 0.361485 | 2_4:+8052035 | None:intergenic |
| ATATACACGATGAAAATGTT+TGG | 0.422480 | 2_4:-8050489 | Msa0312850:three_prime_UTR |
| GGTTGTTCTAATAACTGGAT+TGG | 0.435753 | 2_4:-8051463 | Msa0312850:CDS |
| CTTCGTGTTCTTCATGAAGA+AGG | 0.454763 | 2_4:-8051414 | Msa0312850:CDS |
| ATAAACTTCTTCAATCTCTC+AGG | 0.467349 | 2_4:+8050594 | None:intergenic |
| TTTCCATTCAATACACTGCC+AGG | 0.483911 | 2_4:-8051346 | Msa0312850:intron |
| AGCGAGTCCTCCAATTTCTA+GGG | 0.484622 | 2_4:-8050434 | Msa0312850:three_prime_UTR |
| TTGACAGAAAATTCATTGAA+AGG | 0.497350 | 2_4:-8052019 | Msa0312850:CDS |
| TGTCAATTCTGGATGAACTA+GGG | 0.529487 | 2_4:+8052036 | None:intergenic |
| GAAAAGAAGAACTTTCTACT+AGG | 0.532951 | 2_4:-8051579 | Msa0312850:CDS |
| GATCAACTTGGAGAAAATGA+AGG | 0.550998 | 2_4:-8051601 | Msa0312850:CDS |
| TTACCTGGCAGTGTATTGAA+TGG | 0.573100 | 2_4:+8051343 | None:intergenic |
| GCATTGTTACACACTCTGAA+AGG | 0.598439 | 2_4:+8050551 | None:intergenic |
| AAAGAAATTACAGATCAACT+TGG | 0.602314 | 2_4:-8051613 | Msa0312850:CDS |
| ATGAATAGAAACAAGAACAT+GGG | 0.625623 | 2_4:-8051534 | Msa0312850:CDS |
| TATGAATAGAAACAAGAACA+TGG | 0.630359 | 2_4:-8051535 | Msa0312850:CDS |
| GAAGCCTTAGAAGTTTGATG+AGG | 0.639591 | 2_4:+8051945 | None:intergenic |
| TCTGATGCAGGCAATTTCAG+CGG | 0.656079 | 2_4:-8051667 | Msa0312850:intron |
| CTTCTTCATGAAGAACACGA+AGG | 0.679799 | 2_4:+8051415 | None:intergenic |
| TTCAGCGGCAGATCAGCTCG+AGG | 0.700026 | 2_4:-8051652 | Msa0312850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTATTCATAAAATTATA+TGG | - | chr2_4:8051651-8051670 | Msa0312850:CDS | 10.0% |
| !! | AAGTTATTCATAAAATTATA+TGG | - | chr2_4:8051651-8051670 | Msa0312850:CDS | 10.0% |
| !! | AAAAAAAAATTAAGAGAGAA+AGG | + | chr2_4:8050487-8050506 | None:intergenic | 15.0% |
| !!! | ATTTGTTGTATCTTAATTTT+TGG | + | chr2_4:8050905-8050924 | None:intergenic | 15.0% |
| !! | AAAATTAAGATACAACAAAT+TGG | - | chr2_4:8050905-8050924 | Msa0312850:intron | 15.0% |
| !!! | GCATTTTATAATATTTATGT+TGG | - | chr2_4:8052033-8052052 | Msa0312850:CDS | 15.0% |
| !! | AAAAAAAAATTAAGAGAGAA+AGG | + | chr2_4:8050487-8050506 | None:intergenic | 15.0% |
| !!! | ATTTGTTGTATCTTAATTTT+TGG | + | chr2_4:8050905-8050924 | None:intergenic | 15.0% |
| !! | AAAATTAAGATACAACAAAT+TGG | - | chr2_4:8050905-8050924 | Msa0312850:intron | 15.0% |
| !!! | GCATTTTATAATATTTATGT+TGG | - | chr2_4:8052033-8052052 | Msa0312850:CDS | 15.0% |
| !! | GAAAAAAATAGAATTAGTGA+CGG | - | chr2_4:8050555-8050574 | Msa0312850:three_prime_UTR | 20.0% |
| !! | TACAAAATATAGTGACATTA+AGG | + | chr2_4:8050622-8050641 | None:intergenic | 20.0% |
| !!! | TAATTTAATTTATCTGATGC+AGG | - | chr2_4:8050724-8050743 | Msa0312850:intron | 20.0% |
| !! | TTTCTATTCATATTCACATT+TGG | + | chr2_4:8050860-8050879 | None:intergenic | 20.0% |
| !!! | CATTTAGTGAATAATTTTGT+TGG | + | chr2_4:8051219-8051238 | None:intergenic | 20.0% |
| !! | AATCGTAATTAAATATGAGT+CGG | + | chr2_4:8051313-8051332 | None:intergenic | 20.0% |
| !! | TTACTTGACAAATGAAATAA+AGG | - | chr2_4:8051417-8051436 | Msa0312850:CDS | 20.0% |
| !!! | GAGTTGATTTCATTTTTTAA+GGG | - | chr2_4:8051439-8051458 | Msa0312850:CDS | 20.0% |
| !!! | AACTGATTTTTATAATGTGT+TGG | - | chr2_4:8051471-8051490 | Msa0312850:CDS | 20.0% |
| !! | ATGAATATTTGAACATCAAT+AGG | - | chr2_4:8051718-8051737 | Msa0312850:intron | 20.0% |
| !!! | CTAATTGCATTGTTTTATTT+AGG | - | chr2_4:8051754-8051773 | Msa0312850:intron | 20.0% |
| !!! | ATAATATTTATGTTGGTGTT+TGG | - | chr2_4:8052040-8052059 | Msa0312850:CDS | 20.0% |
| !! | GAAAAAAATAGAATTAGTGA+CGG | - | chr2_4:8050555-8050574 | Msa0312850:three_prime_UTR | 20.0% |
| !! | TACAAAATATAGTGACATTA+AGG | + | chr2_4:8050622-8050641 | None:intergenic | 20.0% |
| !!! | TAATTTAATTTATCTGATGC+AGG | - | chr2_4:8050724-8050743 | Msa0312850:intron | 20.0% |
| !! | TTTCTATTCATATTCACATT+TGG | + | chr2_4:8050860-8050879 | None:intergenic | 20.0% |
| !!! | CATTTAGTGAATAATTTTGT+TGG | + | chr2_4:8051219-8051238 | None:intergenic | 20.0% |
| !! | AATCGTAATTAAATATGAGT+CGG | + | chr2_4:8051313-8051332 | None:intergenic | 20.0% |
| !! | TTACTTGACAAATGAAATAA+AGG | - | chr2_4:8051417-8051436 | Msa0312850:CDS | 20.0% |
| !!! | GAGTTGATTTCATTTTTTAA+GGG | - | chr2_4:8051439-8051458 | Msa0312850:CDS | 20.0% |
| !!! | AACTGATTTTTATAATGTGT+TGG | - | chr2_4:8051471-8051490 | Msa0312850:CDS | 20.0% |
| !! | ATGAATATTTGAACATCAAT+AGG | - | chr2_4:8051718-8051737 | Msa0312850:intron | 20.0% |
| !!! | CTAATTGCATTGTTTTATTT+AGG | - | chr2_4:8051754-8051773 | Msa0312850:intron | 20.0% |
| !!! | ATAATATTTATGTTGGTGTT+TGG | - | chr2_4:8052040-8052059 | Msa0312850:CDS | 20.0% |
| !! | AATGAATTTTCTGTCAATTC+TGG | + | chr2_4:8050381-8050400 | None:intergenic | 25.0% |
| ! | TTGACAGAAAATTCATTGAA+AGG | - | chr2_4:8050384-8050403 | Msa0312850:three_prime_UTR | 25.0% |
| !! | CACTATATTTTGTAAAACGA+CGG | - | chr2_4:8050628-8050647 | Msa0312850:CDS | 25.0% |
| ! | AAAGAAATTACAGATCAACT+TGG | - | chr2_4:8050790-8050809 | Msa0312850:intron | 25.0% |
| ! | TATGAATAGAAACAAGAACA+TGG | - | chr2_4:8050868-8050887 | Msa0312850:intron | 25.0% |
| ! | ATGAATAGAAACAAGAACAT+GGG | - | chr2_4:8050869-8050888 | Msa0312850:intron | 25.0% |
| !! | TATTCTCAATGCTACTTATA+AGG | - | chr2_4:8051018-8051037 | Msa0312850:intron | 25.0% |
| ! | GTAACAATTTATGATTTACC+TGG | + | chr2_4:8051078-8051097 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTTGCACATTTG+AGG | + | chr2_4:8051180-8051199 | None:intergenic | 25.0% |
| !! | TAGTGAATAATTTTGTTGGT+AGG | + | chr2_4:8051215-8051234 | None:intergenic | 25.0% |
| !!! | GGAGTTGATTTCATTTTTTA+AGG | - | chr2_4:8051438-8051457 | Msa0312850:CDS | 25.0% |
| !!! | TTGCATTGTTTTATTTAGGT+AGG | - | chr2_4:8051758-8051777 | Msa0312850:intron | 25.0% |
| ! | TTTATTTAGGTAGGAGAATT+TGG | - | chr2_4:8051767-8051786 | Msa0312850:intron | 25.0% |
| ! | ATATACACGATGAAAATGTT+TGG | - | chr2_4:8051914-8051933 | Msa0312850:intron | 25.0% |
| !! | AATGAATTTTCTGTCAATTC+TGG | + | chr2_4:8050381-8050400 | None:intergenic | 25.0% |
| ! | TTGACAGAAAATTCATTGAA+AGG | - | chr2_4:8050384-8050403 | Msa0312850:three_prime_UTR | 25.0% |
| !! | CACTATATTTTGTAAAACGA+CGG | - | chr2_4:8050628-8050647 | Msa0312850:CDS | 25.0% |
| ! | AAAGAAATTACAGATCAACT+TGG | - | chr2_4:8050790-8050809 | Msa0312850:intron | 25.0% |
| ! | TATGAATAGAAACAAGAACA+TGG | - | chr2_4:8050868-8050887 | Msa0312850:intron | 25.0% |
| ! | ATGAATAGAAACAAGAACAT+GGG | - | chr2_4:8050869-8050888 | Msa0312850:intron | 25.0% |
| !! | TATTCTCAATGCTACTTATA+AGG | - | chr2_4:8051018-8051037 | Msa0312850:intron | 25.0% |
| ! | GTAACAATTTATGATTTACC+TGG | + | chr2_4:8051078-8051097 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTTGCACATTTG+AGG | + | chr2_4:8051180-8051199 | None:intergenic | 25.0% |
| !! | TAGTGAATAATTTTGTTGGT+AGG | + | chr2_4:8051215-8051234 | None:intergenic | 25.0% |
| !!! | GGAGTTGATTTCATTTTTTA+AGG | - | chr2_4:8051438-8051457 | Msa0312850:CDS | 25.0% |
| !!! | TTGCATTGTTTTATTTAGGT+AGG | - | chr2_4:8051758-8051777 | Msa0312850:intron | 25.0% |
| ! | TTTATTTAGGTAGGAGAATT+TGG | - | chr2_4:8051767-8051786 | Msa0312850:intron | 25.0% |
| ! | ATATACACGATGAAAATGTT+TGG | - | chr2_4:8051914-8051933 | Msa0312850:intron | 25.0% |
| GAAAAGAAGAACTTTCTACT+AGG | - | chr2_4:8050824-8050843 | Msa0312850:intron | 30.0% | |
| !! | ACAAATTGGTTTAGTCTTAG+AGG | - | chr2_4:8050919-8050938 | Msa0312850:intron | 30.0% |
| TTAGAGGTTGTTCTAATAAC+TGG | - | chr2_4:8050935-8050954 | Msa0312850:intron | 30.0% | |
| ATATGAAATCAAGTGCAAGA+AGG | - | chr2_4:8051123-8051142 | Msa0312850:intron | 30.0% | |
| ! | CAAACTTGAGTTTTACCTAA+GGG | + | chr2_4:8051286-8051305 | None:intergenic | 30.0% |
| ! | TCAAACTTGAGTTTTACCTA+AGG | + | chr2_4:8051287-8051306 | None:intergenic | 30.0% |
| TGATGCTAATAATATTGCAC+AGG | + | chr2_4:8051385-8051404 | None:intergenic | 30.0% | |
| ! | TCGACCAAATATTTTCTCAA+AGG | - | chr2_4:8051527-8051546 | Msa0312850:CDS | 30.0% |
| ! | CGACCAAATATTTTCTCAAA+GGG | - | chr2_4:8051528-8051547 | Msa0312850:CDS | 30.0% |
| ! | GACCAAATATTTTCTCAAAG+GGG | - | chr2_4:8051529-8051548 | Msa0312850:CDS | 30.0% |
| ! | TACCCCTTTGAGAAAATATT+TGG | + | chr2_4:8051534-8051553 | None:intergenic | 30.0% |
| TCAATAACATCACACTAATG+GGG | + | chr2_4:8051603-8051622 | None:intergenic | 30.0% | |
| GTCAATAACATCACACTAAT+GGG | + | chr2_4:8051604-8051623 | None:intergenic | 30.0% | |
| TGTCAATAACATCACACTAA+TGG | + | chr2_4:8051605-8051624 | None:intergenic | 30.0% | |
| CATAAAATTATATGGCCACT+TGG | - | chr2_4:8051659-8051678 | Msa0312850:CDS | 30.0% | |
| ATAAACTTCTTCAATCTCTC+AGG | + | chr2_4:8051812-8051831 | None:intergenic | 30.0% | |
| !! | CAAACTTTTTCCCTAGAAAT+TGG | + | chr2_4:8051982-8052001 | None:intergenic | 30.0% |
| GAAAAGAAGAACTTTCTACT+AGG | - | chr2_4:8050824-8050843 | Msa0312850:intron | 30.0% | |
| !! | ACAAATTGGTTTAGTCTTAG+AGG | - | chr2_4:8050919-8050938 | Msa0312850:intron | 30.0% |
| TTAGAGGTTGTTCTAATAAC+TGG | - | chr2_4:8050935-8050954 | Msa0312850:intron | 30.0% | |
| ATATGAAATCAAGTGCAAGA+AGG | - | chr2_4:8051123-8051142 | Msa0312850:intron | 30.0% | |
| ! | CAAACTTGAGTTTTACCTAA+GGG | + | chr2_4:8051286-8051305 | None:intergenic | 30.0% |
| ! | TCAAACTTGAGTTTTACCTA+AGG | + | chr2_4:8051287-8051306 | None:intergenic | 30.0% |
| TGATGCTAATAATATTGCAC+AGG | + | chr2_4:8051385-8051404 | None:intergenic | 30.0% | |
| ! | TCGACCAAATATTTTCTCAA+AGG | - | chr2_4:8051527-8051546 | Msa0312850:CDS | 30.0% |
| ! | CGACCAAATATTTTCTCAAA+GGG | - | chr2_4:8051528-8051547 | Msa0312850:CDS | 30.0% |
| ! | GACCAAATATTTTCTCAAAG+GGG | - | chr2_4:8051529-8051548 | Msa0312850:CDS | 30.0% |
| ! | TACCCCTTTGAGAAAATATT+TGG | + | chr2_4:8051534-8051553 | None:intergenic | 30.0% |
| TCAATAACATCACACTAATG+GGG | + | chr2_4:8051603-8051622 | None:intergenic | 30.0% | |
| GTCAATAACATCACACTAAT+GGG | + | chr2_4:8051604-8051623 | None:intergenic | 30.0% | |
| TGTCAATAACATCACACTAA+TGG | + | chr2_4:8051605-8051624 | None:intergenic | 30.0% | |
| CATAAAATTATATGGCCACT+TGG | - | chr2_4:8051659-8051678 | Msa0312850:CDS | 30.0% | |
| ATAAACTTCTTCAATCTCTC+AGG | + | chr2_4:8051812-8051831 | None:intergenic | 30.0% | |
| !! | CAAACTTTTTCCCTAGAAAT+TGG | + | chr2_4:8051982-8052001 | None:intergenic | 30.0% |
| TGTCAATTCTGGATGAACTA+GGG | + | chr2_4:8050370-8050389 | None:intergenic | 35.0% | |
| AAGCATCTAAGAGAGAAGAA+AGG | + | chr2_4:8050513-8050532 | None:intergenic | 35.0% | |
| ! | TTTTGTAAAACGACGGATGT+TGG | - | chr2_4:8050635-8050654 | Msa0312850:intron | 35.0% |
| GATCAACTTGGAGAAAATGA+AGG | - | chr2_4:8050802-8050821 | Msa0312850:intron | 35.0% | |
| GGTTGTTCTAATAACTGGAT+TGG | - | chr2_4:8050940-8050959 | Msa0312850:intron | 35.0% | |
| GTGTGATGTTATTGACAACA+TGG | - | chr2_4:8051608-8051627 | Msa0312850:CDS | 35.0% | |
| !! | ACTTTTTCCCTAGAAATTGG+AGG | + | chr2_4:8051979-8051998 | None:intergenic | 35.0% |
| TGTCAATTCTGGATGAACTA+GGG | + | chr2_4:8050370-8050389 | None:intergenic | 35.0% | |
| AAGCATCTAAGAGAGAAGAA+AGG | + | chr2_4:8050513-8050532 | None:intergenic | 35.0% | |
| ! | TTTTGTAAAACGACGGATGT+TGG | - | chr2_4:8050635-8050654 | Msa0312850:intron | 35.0% |
| GATCAACTTGGAGAAAATGA+AGG | - | chr2_4:8050802-8050821 | Msa0312850:intron | 35.0% | |
| GGTTGTTCTAATAACTGGAT+TGG | - | chr2_4:8050940-8050959 | Msa0312850:intron | 35.0% | |
| GTGTGATGTTATTGACAACA+TGG | - | chr2_4:8051608-8051627 | Msa0312850:CDS | 35.0% | |
| !! | ACTTTTTCCCTAGAAATTGG+AGG | + | chr2_4:8051979-8051998 | None:intergenic | 35.0% |
| CTGTCAATTCTGGATGAACT+AGG | + | chr2_4:8050371-8050390 | None:intergenic | 40.0% | |
| TCTGCCTCATCAAACTTCTA+AGG | - | chr2_4:8050454-8050473 | Msa0312850:three_prime_UTR | 40.0% | |
| GAAGCCTTAGAAGTTTGATG+AGG | + | chr2_4:8050461-8050480 | None:intergenic | 40.0% | |
| CTTCTTCATGAAGAACACGA+AGG | + | chr2_4:8050991-8051010 | None:intergenic | 40.0% | |
| CTTCGTGTTCTTCATGAAGA+AGG | - | chr2_4:8050989-8051008 | Msa0312850:intron | 40.0% | |
| TTTCCATTCAATACACTGCC+AGG | - | chr2_4:8051057-8051076 | Msa0312850:intron | 40.0% | |
| TTACCTGGCAGTGTATTGAA+TGG | + | chr2_4:8051063-8051082 | None:intergenic | 40.0% | |
| GTAAATGTCTATGTGCCCTT+AGG | - | chr2_4:8051268-8051287 | Msa0312850:intron | 40.0% | |
| TTGATGCAACTCATACCAAG+TGG | + | chr2_4:8051677-8051696 | None:intergenic | 40.0% | |
| CTTGGTATGAGTTGCATCAA+AGG | - | chr2_4:8051677-8051696 | Msa0312850:intron | 40.0% | |
| GCATTGTTACACACTCTGAA+AGG | + | chr2_4:8051855-8051874 | None:intergenic | 40.0% | |
| CTGTCAATTCTGGATGAACT+AGG | + | chr2_4:8050371-8050390 | None:intergenic | 40.0% | |
| TCTGCCTCATCAAACTTCTA+AGG | - | chr2_4:8050454-8050473 | Msa0312850:three_prime_UTR | 40.0% | |
| GAAGCCTTAGAAGTTTGATG+AGG | + | chr2_4:8050461-8050480 | None:intergenic | 40.0% | |
| CTTCTTCATGAAGAACACGA+AGG | + | chr2_4:8050991-8051010 | None:intergenic | 40.0% | |
| CTTCGTGTTCTTCATGAAGA+AGG | - | chr2_4:8050989-8051008 | Msa0312850:intron | 40.0% | |
| TTTCCATTCAATACACTGCC+AGG | - | chr2_4:8051057-8051076 | Msa0312850:intron | 40.0% | |
| TTACCTGGCAGTGTATTGAA+TGG | + | chr2_4:8051063-8051082 | None:intergenic | 40.0% | |
| GTAAATGTCTATGTGCCCTT+AGG | - | chr2_4:8051268-8051287 | Msa0312850:intron | 40.0% | |
| TTGATGCAACTCATACCAAG+TGG | + | chr2_4:8051677-8051696 | None:intergenic | 40.0% | |
| CTTGGTATGAGTTGCATCAA+AGG | - | chr2_4:8051677-8051696 | Msa0312850:intron | 40.0% | |
| GCATTGTTACACACTCTGAA+AGG | + | chr2_4:8051855-8051874 | None:intergenic | 40.0% | |
| TCTGATGCAGGCAATTTCAG+CGG | - | chr2_4:8050736-8050755 | Msa0312850:intron | 45.0% | |
| TAGCACATGACCTCGAAGTT+AGG | - | chr2_4:8051152-8051171 | Msa0312850:intron | 45.0% | |
| AGCACATGACCTCGAAGTTA+GGG | - | chr2_4:8051153-8051172 | Msa0312850:intron | 45.0% | |
| TAGCGAGTCCTCCAATTTCT+AGG | - | chr2_4:8051968-8051987 | Msa0312850:CDS | 45.0% | |
| AGCGAGTCCTCCAATTTCTA+GGG | - | chr2_4:8051969-8051988 | Msa0312850:CDS | 45.0% | |
| TCTGATGCAGGCAATTTCAG+CGG | - | chr2_4:8050736-8050755 | Msa0312850:intron | 45.0% | |
| TAGCACATGACCTCGAAGTT+AGG | - | chr2_4:8051152-8051171 | Msa0312850:intron | 45.0% | |
| AGCACATGACCTCGAAGTTA+GGG | - | chr2_4:8051153-8051172 | Msa0312850:intron | 45.0% | |
| TAGCGAGTCCTCCAATTTCT+AGG | - | chr2_4:8051968-8051987 | Msa0312850:CDS | 45.0% | |
| AGCGAGTCCTCCAATTTCTA+GGG | - | chr2_4:8051969-8051988 | Msa0312850:CDS | 45.0% | |
| !!! | TATTTTCTTTTTTTTTTTAA+TGG | - | chr2_4:8050658-8050677 | Msa0312850:intron | 5.0% |
| !! | ATTATATGATTATTATTATA+AGG | - | chr2_4:8051349-8051368 | Msa0312850:CDS | 5.0% |
| !! | TTATATGATTATTATTATAA+GGG | - | chr2_4:8051350-8051369 | Msa0312850:CDS | 5.0% |
| !!! | TATTTTCTTTTTTTTTTTAA+TGG | - | chr2_4:8050658-8050677 | Msa0312850:intron | 5.0% |
| !! | ATTATATGATTATTATTATA+AGG | - | chr2_4:8051349-8051368 | Msa0312850:CDS | 5.0% |
| !! | TTATATGATTATTATTATAA+GGG | - | chr2_4:8051350-8051369 | Msa0312850:CDS | 5.0% |
| GCACATGACCTCGAAGTTAG+GGG | - | chr2_4:8051154-8051173 | Msa0312850:intron | 50.0% | |
| ! | ATTTGAGGCCCCTAACTTCG+AGG | + | chr2_4:8051165-8051184 | None:intergenic | 50.0% |
| GCACATGACCTCGAAGTTAG+GGG | - | chr2_4:8051154-8051173 | Msa0312850:intron | 50.0% | |
| ! | ATTTGAGGCCCCTAACTTCG+AGG | + | chr2_4:8051165-8051184 | None:intergenic | 50.0% |
| TTCAGCGGCAGATCAGCTCG+AGG | - | chr2_4:8050751-8050770 | Msa0312850:intron | 60.0% | |
| TTCAGCGGCAGATCAGCTCG+AGG | - | chr2_4:8050751-8050770 | Msa0312850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 8050356 | 8052069 | 8050356 | ID=Msa0312850;Name=Msa0312850 |
| chr2_4 | mRNA | 8050356 | 8052069 | 8050356 | ID=Msa0312850-mRNA-1;Parent=Msa0312850;Name=Msa0312850-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.5|0.66|1|1|1|3|225|173 |
| chr2_4 | exon | 8050356 | 8050649 | 8050356 | ID=Msa0312850-mRNA-1:exon:3134;Parent=Msa0312850-mRNA-1 |
| chr2_4 | exon | 8051347 | 8051679 | 8051347 | ID=Msa0312850-mRNA-1:exon:3133;Parent=Msa0312850-mRNA-1 |
| chr2_4 | exon | 8051950 | 8052069 | 8051950 | ID=Msa0312850-mRNA-1:exon:3132;Parent=Msa0312850-mRNA-1 |
| chr2_4 | CDS | 8051950 | 8052069 | 8051950 | ID=Msa0312850-mRNA-1:cds;Parent=Msa0312850-mRNA-1 |
| chr2_4 | CDS | 8051347 | 8051679 | 8051347 | ID=Msa0312850-mRNA-1:cds;Parent=Msa0312850-mRNA-1 |
| chr2_4 | CDS | 8050581 | 8050649 | 8050581 | ID=Msa0312850-mRNA-1:cds;Parent=Msa0312850-mRNA-1 |
| chr2_4 | three_prime_UTR | 8050356 | 8050580 | 8050356 | ID=Msa0312850-mRNA-1:three_prime_utr;Parent=Msa0312850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
