Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391880 | KEH37514.1 | 86.124 | 209 | 7 | 1 | 1 | 209 | 1 | 187 | 9.09e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391880 | sp|P93401|NU2M_OENBE | 87.209 | 86 | 11 | 0 | 1 | 86 | 99 | 184 | 1.69e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391880 | A0A072V639 | 86.124 | 209 | 7 | 1 | 1 | 209 | 1 | 187 | 4.34e-117 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1391880 | Msa1391970 | 0.801222 | 9.967598e-49 | -8.615850e-47 |
| Msa0983420 | Msa1391880 | 0.927093 | 1.897625e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391880 | MtrunA17_Chr2g0300131 | 98.958 | 96 | 1 | 0 | 114 | 209 | 1 | 96 | 7.08e-65 | 195 |
| Msa1391880 | MtrunA17_MTg0490911 | 94.565 | 92 | 3 | 1 | 1 | 92 | 58 | 147 | 6.33e-56 | 174 |
| Msa1391880 | MtrunA17_Chr2g0300121 | 94.565 | 92 | 3 | 1 | 1 | 92 | 58 | 147 | 6.33e-56 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391880 | ATMG00285.1 | 95.181 | 83 | 4 | 0 | 1 | 83 | 110 | 192 | 2.51e-50 | 162 |
Find 61 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTAGGCAACGAAATAAAA+AGG | 0.239100 | tig0021468:-2005 | Msa1391880:CDS |
| TCCTCTGGAATCTTACTGTT+TGG | 0.240334 | tig0021468:-2426 | Msa1391880:CDS |
| CCTCTGGAATCTTACTGTTT+GGG | 0.296834 | tig0021468:-2425 | Msa1391880:intron |
| GGCTCGAAATATTTGATCTT+AGG | 0.365069 | tig0021468:-2456 | Msa1391880:CDS |
| TCCTTCCGGAATTGCGTTAT+CGG | 0.367528 | tig0021468:-1879 | Msa1391880:CDS |
| CGCTCCTCTAGTTGAAGTCT+CGG | 0.368123 | tig0021468:+1979 | None:intergenic |
| TGTCCACTAACGGCCATTCC+TGG | 0.375822 | tig0021468:+1849 | None:intergenic |
| GTTCCTATGGAGATTCCCTT+TGG | 0.388252 | tig0021468:-2129 | Msa1391880:CDS |
| GCCCAACTACCGACTCCTTC+CGG | 0.389296 | tig0021468:-1893 | Msa1391880:CDS |
| CGGCTCCGATAACGCAATTC+CGG | 0.400282 | tig0021468:+1874 | None:intergenic |
| GGAGATCGAGACACAGCCCC+AGG | 0.437073 | tig0021468:+2175 | None:intergenic |
| TCGGGGTTTGGTGAACCAAC+TGG | 0.437317 | tig0021468:+1955 | None:intergenic |
| TTCCGGAAGGAGTCGGTAGT+TGG | 0.438956 | tig0021468:+1891 | None:intergenic |
| AGCATCAAACCTCTCTTGTT+CGG | 0.441217 | tig0021468:+2638 | None:intergenic |
| ACCTGGAGAACGCGTGACGC+TGG | 0.445890 | tig0021468:+1931 | None:intergenic |
| GACCCTCTATGTAGTTTGTC+TGG | 0.450320 | tig0021468:-2225 | Msa1391880:intron |
| TACATCTTTCCTCAAAGCCC+TGG | 0.451270 | tig0021468:-2193 | Msa1391880:CDS |
| CACCTTCGGAATACCCCATA+AGG | 0.451763 | tig0021468:+2030 | None:intergenic |
| CAGTATGCTCTTTATGATCT+CGG | 0.453627 | tig0021468:-2580 | Msa1391880:CDS |
| CGTTGCCTAGGTTACACCTT+CGG | 0.463918 | tig0021468:+2016 | None:intergenic |
| GACACAGCCCCAGGGCTTTG+AGG | 0.473185 | tig0021468:+2184 | None:intergenic |
| TCCGGAAGGAGTCGGTAGTT+GGG | 0.475847 | tig0021468:+1892 | None:intergenic |
| CACGCGTTCTCCAGGTCCGA+AGG | 0.491251 | tig0021468:-1924 | Msa1391880:CDS |
| ATATTTCGAGCCGGCTTCCG+TGG | 0.497146 | tig0021468:+2467 | None:intergenic |
| ATCTGAGGGACTAGTTCCTA+TGG | 0.500242 | tig0021468:-2142 | Msa1391880:CDS |
| GCACTGGATCCCTTCGGACC+TGG | 0.504597 | tig0021468:+1914 | None:intergenic |
| AGCATACTGCGAGTAGGAAG+TGG | 0.516788 | tig0021468:+2594 | None:intergenic |
| ACATCTTTCCTCAAAGCCCT+GGG | 0.518148 | tig0021468:-2192 | Msa1391880:CDS |
| AGGAGTCGGTAGTTGGGCAC+TGG | 0.522861 | tig0021468:+1898 | None:intergenic |
| GAGAACGCGTGACGCTGGGT+CGG | 0.530671 | tig0021468:+1936 | None:intergenic |
| AGTTGGGCACTGGATCCCTT+CGG | 0.534387 | tig0021468:+1908 | None:intergenic |
| ACTAACGGCCATTCCTGGCT+CGG | 0.539327 | tig0021468:+1854 | None:intergenic |
| CAACTAGAGGAGCGACCAGT+TGG | 0.547893 | tig0021468:-1970 | Msa1391880:CDS |
| AGGCGTGGAATTAGACCAAA+GGG | 0.552759 | tig0021468:+2114 | None:intergenic |
| TCCCTTATGGGGTATTCCGA+AGG | 0.555293 | tig0021468:-2032 | Msa1391880:CDS |
| TCTCCTACGTGCGAAATCTG+AGG | 0.556024 | tig0021468:-2157 | Msa1391880:CDS |
| TATCGGAGCCGAGCCAGGAA+TGG | 0.558454 | tig0021468:-1862 | Msa1391880:CDS |
| ACCTTCGGAATACCCCATAA+GGG | 0.560916 | tig0021468:+2031 | None:intergenic |
| TGGCGTAAAGTTAAGATTGA+GGG | 0.563844 | tig0021468:-2069 | Msa1391880:CDS |
| AGACCAAAGGGAATCTCCAT+AGG | 0.564375 | tig0021468:+2126 | None:intergenic |
| GCTCCTCTAGTTGAAGTCTC+GGG | 0.575993 | tig0021468:+1980 | None:intergenic |
| TAAGATCAAATATTTCGAGC+CGG | 0.582354 | tig0021468:+2458 | None:intergenic |
| AACGCAATTCCGGAAGGAGT+CGG | 0.583964 | tig0021468:+1884 | None:intergenic |
| CTCCTACGTGCGAAATCTGA+GGG | 0.592544 | tig0021468:-2156 | Msa1391880:CDS |
| TCGATTCTTCCGAACAAGAG+AGG | 0.595618 | tig0021468:-2647 | Msa1391880:CDS |
| AGGCTCAATAGCTAAATACA+TGG | 0.597655 | tig0021468:+2542 | None:intergenic |
| GTGGCGTAAAGTTAAGATTG+AGG | 0.608450 | tig0021468:-2070 | Msa1391880:CDS |
| TCTCCTTTCGTCATAAGGCG+TGG | 0.619086 | tig0021468:+2099 | None:intergenic |
| TCCGATAACGCAATTCCGGA+AGG | 0.619473 | tig0021468:+1878 | None:intergenic |
| ACGCGTTCTCCAGGTCCGAA+GGG | 0.629117 | tig0021468:-1923 | Msa1391880:CDS |
| ATAAAGAGCATACTGCGAGT+AGG | 0.631166 | tig0021468:+2588 | None:intergenic |
| GTATTCCGAAGGTGTAACCT+AGG | 0.639271 | tig0021468:-2021 | Msa1391880:CDS |
| ATTCCACGCCTTATGACGAA+AGG | 0.640668 | tig0021468:-2102 | Msa1391880:CDS |
| AAGGCGTGGAATTAGACCAA+AGG | 0.643439 | tig0021468:+2113 | None:intergenic |
| CATCTTTCCTCAAAGCCCTG+GGG | 0.665082 | tig0021468:-2191 | Msa1391880:CDS |
| CCTTATGACGAAAGGAGAGT+CGG | 0.668549 | tig0021468:-2094 | Msa1391880:CDS |
| CCCAAACAGTAAGATTCCAG+AGG | 0.678155 | tig0021468:+2425 | None:intergenic |
| TGACGAAAGGAGAGTCGGCG+TGG | 0.679756 | tig0021468:-2089 | Msa1391880:CDS |
| GAGATCGAGACACAGCCCCA+GGG | 0.692823 | tig0021468:+2176 | None:intergenic |
| GGGCCCGAGACTTCAACTAG+AGG | 0.695733 | tig0021468:-1983 | Msa1391880:CDS |
| GTCCCTCAGATTTCGCACGT+AGG | 0.750430 | tig0021468:+2154 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATATCGTAAACTAT+CGG | - | tig0021468:2167-2186 | Msa1391880:CDS | 15.0% |
| !! | AAATATATATCGTAAACTAT+CGG | - | tig0021468:2167-2186 | Msa1391880:CDS | 15.0% |
| !! | ACATAAAAACATAAACTTTG+AGG | + | tig0021468:1990-2009 | None:intergenic | 20.0% |
| !!! | AAGTTTATGTTTTTATGTGA+TGG | - | tig0021468:1992-2011 | Msa1391880:CDS | 20.0% |
| !!! | GAAAGGATATTTTTAGATAT+CGG | + | tig0021468:2126-2145 | None:intergenic | 20.0% |
| !! | ACATAAAAACATAAACTTTG+AGG | + | tig0021468:1990-2009 | None:intergenic | 20.0% |
| !!! | AAGTTTATGTTTTTATGTGA+TGG | - | tig0021468:1992-2011 | Msa1391880:CDS | 20.0% |
| !!! | GAAAGGATATTTTTAGATAT+CGG | + | tig0021468:2126-2145 | None:intergenic | 20.0% |
| ! | AATAGAGAAAAATTCCCTTA+TGG | - | tig0021468:2464-2483 | Msa1391880:CDS | 25.0% |
| ! | ATAGAGAAAAATTCCCTTAT+GGG | - | tig0021468:2465-2484 | Msa1391880:CDS | 25.0% |
| ! | AATAGAGAAAAATTCCCTTA+TGG | - | tig0021468:2464-2483 | Msa1391880:CDS | 25.0% |
| ! | ATAGAGAAAAATTCCCTTAT+GGG | - | tig0021468:2465-2484 | Msa1391880:CDS | 25.0% |
| ! | AAGAAAGTCTGAATTTTCCA+CGG | - | tig0021468:2025-2044 | Msa1391880:CDS | 30.0% |
| TAAGATCAAATATTTCGAGC+CGG | + | tig0021468:2054-2073 | None:intergenic | 30.0% | |
| ACAACATTCTAAGCTAAGAA+AGG | + | tig0021468:2143-2162 | None:intergenic | 30.0% | |
| TATATCGTAAACTATCGGAT+CGG | - | tig0021468:2172-2191 | Msa1391880:CDS | 30.0% | |
| TAGAGAAAAATTCCCTTATG+GGG | - | tig0021468:2466-2485 | Msa1391880:CDS | 30.0% | |
| ! | AAGAAAGTCTGAATTTTCCA+CGG | - | tig0021468:2025-2044 | Msa1391880:CDS | 30.0% |
| TAAGATCAAATATTTCGAGC+CGG | + | tig0021468:2054-2073 | None:intergenic | 30.0% | |
| ACAACATTCTAAGCTAAGAA+AGG | + | tig0021468:2143-2162 | None:intergenic | 30.0% | |
| TATATCGTAAACTATCGGAT+CGG | - | tig0021468:2172-2191 | Msa1391880:CDS | 30.0% | |
| TAGAGAAAAATTCCCTTATG+GGG | - | tig0021468:2466-2485 | Msa1391880:CDS | 30.0% | |
| CAGTATGCTCTTTATGATCT+CGG | - | tig0021468:1929-1948 | Msa1391880:CDS | 35.0% | |
| AGGCTCAATAGCTAAATACA+TGG | + | tig0021468:1970-1989 | None:intergenic | 35.0% | |
| GGCTCGAAATATTTGATCTT+AGG | - | tig0021468:2053-2072 | Msa1391880:CDS | 35.0% | |
| TTTAGATATCGGTAGTTGTC+CGG | + | tig0021468:2115-2134 | None:intergenic | 35.0% | |
| ATATCGTAAACTATCGGATC+GGG | - | tig0021468:2173-2192 | Msa1391880:CDS | 35.0% | |
| TGGCGTAAAGTTAAGATTGA+GGG | - | tig0021468:2440-2459 | Msa1391880:CDS | 35.0% | |
| ACCTAGGCAACGAAATAAAA+AGG | - | tig0021468:2504-2523 | Msa1391880:CDS | 35.0% | |
| CCTAGGCAACGAAATAAAAA+GGG | - | tig0021468:2505-2524 | Msa1391880:CDS | 35.0% | |
| CTAGGCAACGAAATAAAAAG+GGG | - | tig0021468:2506-2525 | Msa1391880:CDS | 35.0% | |
| CAGTATGCTCTTTATGATCT+CGG | - | tig0021468:1929-1948 | Msa1391880:CDS | 35.0% | |
| AGGCTCAATAGCTAAATACA+TGG | + | tig0021468:1970-1989 | None:intergenic | 35.0% | |
| GGCTCGAAATATTTGATCTT+AGG | - | tig0021468:2053-2072 | Msa1391880:CDS | 35.0% | |
| TTTAGATATCGGTAGTTGTC+CGG | + | tig0021468:2115-2134 | None:intergenic | 35.0% | |
| ATATCGTAAACTATCGGATC+GGG | - | tig0021468:2173-2192 | Msa1391880:CDS | 35.0% | |
| TGGCGTAAAGTTAAGATTGA+GGG | - | tig0021468:2440-2459 | Msa1391880:CDS | 35.0% | |
| ACCTAGGCAACGAAATAAAA+AGG | - | tig0021468:2504-2523 | Msa1391880:CDS | 35.0% | |
| CCTAGGCAACGAAATAAAAA+GGG | - | tig0021468:2505-2524 | Msa1391880:CDS | 35.0% | |
| CTAGGCAACGAAATAAAAAG+GGG | - | tig0021468:2506-2525 | Msa1391880:CDS | 35.0% | |
| AGCATCAAACCTCTCTTGTT+CGG | + | tig0021468:1874-1893 | None:intergenic | 40.0% | |
| ! | ATAAAGAGCATACTGCGAGT+AGG | + | tig0021468:1924-1943 | None:intergenic | 40.0% |
| ! | ATCTTAGGTGCATTTTCCTC+TGG | - | tig0021468:2068-2087 | Msa1391880:CDS | 40.0% |
| !! | TCCTCTGGAATCTTACTGTT+TGG | - | tig0021468:2083-2102 | Msa1391880:CDS | 40.0% |
| !! | CCTCTGGAATCTTACTGTTT+GGG | - | tig0021468:2084-2103 | Msa1391880:CDS | 40.0% |
| ! | AGACCTCATTGGTGATCTTA+CGG | - | tig0021468:2224-2243 | Msa1391880:intron | 40.0% |
| GTGGCGTAAAGTTAAGATTG+AGG | - | tig0021468:2439-2458 | Msa1391880:CDS | 40.0% | |
| !! | CCCTTTTTATTTCGTTGCCT+AGG | + | tig0021468:2508-2527 | None:intergenic | 40.0% |
| AGCATCAAACCTCTCTTGTT+CGG | + | tig0021468:1874-1893 | None:intergenic | 40.0% | |
| ! | ATAAAGAGCATACTGCGAGT+AGG | + | tig0021468:1924-1943 | None:intergenic | 40.0% |
| ! | ATCTTAGGTGCATTTTCCTC+TGG | - | tig0021468:2068-2087 | Msa1391880:CDS | 40.0% |
| !! | TCCTCTGGAATCTTACTGTT+TGG | - | tig0021468:2083-2102 | Msa1391880:CDS | 40.0% |
| !! | CCTCTGGAATCTTACTGTTT+GGG | - | tig0021468:2084-2103 | Msa1391880:CDS | 40.0% |
| ! | AGACCTCATTGGTGATCTTA+CGG | - | tig0021468:2224-2243 | Msa1391880:intron | 40.0% |
| GTGGCGTAAAGTTAAGATTG+AGG | - | tig0021468:2439-2458 | Msa1391880:CDS | 40.0% | |
| !! | CCCTTTTTATTTCGTTGCCT+AGG | + | tig0021468:2508-2527 | None:intergenic | 40.0% |
| TCGATTCTTCCGAACAAGAG+AGG | - | tig0021468:1862-1881 | Msa1391880:CDS | 45.0% | |
| ! | TCTGAATTTTCCACGGAAGC+CGG | - | tig0021468:2032-2051 | Msa1391880:CDS | 45.0% |
| CCCAAACAGTAAGATTCCAG+AGG | + | tig0021468:2087-2106 | None:intergenic | 45.0% | |
| TCTTACTGTTTGGGTACGAC+CGG | - | tig0021468:2093-2112 | Msa1391880:CDS | 45.0% | |
| GTGAAACTTGCAGACCTCAT+TGG | - | tig0021468:2213-2232 | Msa1391880:CDS | 45.0% | |
| ! | GACCTCATTGGTGATCTTAC+GGG | - | tig0021468:2225-2244 | Msa1391880:intron | 45.0% |
| ! | ACCTCATTGGTGATCTTACG+GGG | - | tig0021468:2226-2245 | Msa1391880:intron | 45.0% |
| ! | GACCCTCTATGTAGTTTGTC+TGG | - | tig0021468:2284-2303 | Msa1391880:intron | 45.0% |
| CGCCAGACAAACTACATAGA+GGG | + | tig0021468:2289-2308 | None:intergenic | 45.0% | |
| TCGCCAGACAAACTACATAG+AGG | + | tig0021468:2290-2309 | None:intergenic | 45.0% | |
| TACATCTTTCCTCAAAGCCC+TGG | - | tig0021468:2316-2335 | Msa1391880:intron | 45.0% | |
| ACATCTTTCCTCAAAGCCCT+GGG | - | tig0021468:2317-2336 | Msa1391880:intron | 45.0% | |
| !! | ATCTGAGGGACTAGTTCCTA+TGG | - | tig0021468:2367-2386 | Msa1391880:intron | 45.0% |
| GTTCCTATGGAGATTCCCTT+TGG | - | tig0021468:2380-2399 | Msa1391880:intron | 45.0% | |
| AGACCAAAGGGAATCTCCAT+AGG | + | tig0021468:2386-2405 | None:intergenic | 45.0% | |
| AGGCGTGGAATTAGACCAAA+GGG | + | tig0021468:2398-2417 | None:intergenic | 45.0% | |
| AAGGCGTGGAATTAGACCAA+AGG | + | tig0021468:2399-2418 | None:intergenic | 45.0% | |
| ATTCCACGCCTTATGACGAA+AGG | - | tig0021468:2407-2426 | Msa1391880:intron | 45.0% | |
| CCTTATGACGAAAGGAGAGT+CGG | - | tig0021468:2415-2434 | Msa1391880:intron | 45.0% | |
| ACCTTCGGAATACCCCATAA+GGG | + | tig0021468:2481-2500 | None:intergenic | 45.0% | |
| ! | GTATTCCGAAGGTGTAACCT+AGG | - | tig0021468:2488-2507 | Msa1391880:CDS | 45.0% |
| TCCTTCCGGAATTGCGTTAT+CGG | - | tig0021468:2630-2649 | Msa1391880:CDS | 45.0% | |
| TCGATTCTTCCGAACAAGAG+AGG | - | tig0021468:1862-1881 | Msa1391880:CDS | 45.0% | |
| ! | TCTGAATTTTCCACGGAAGC+CGG | - | tig0021468:2032-2051 | Msa1391880:CDS | 45.0% |
| CCCAAACAGTAAGATTCCAG+AGG | + | tig0021468:2087-2106 | None:intergenic | 45.0% | |
| TCTTACTGTTTGGGTACGAC+CGG | - | tig0021468:2093-2112 | Msa1391880:CDS | 45.0% | |
| GTGAAACTTGCAGACCTCAT+TGG | - | tig0021468:2213-2232 | Msa1391880:CDS | 45.0% | |
| ! | GACCTCATTGGTGATCTTAC+GGG | - | tig0021468:2225-2244 | Msa1391880:intron | 45.0% |
| ! | ACCTCATTGGTGATCTTACG+GGG | - | tig0021468:2226-2245 | Msa1391880:intron | 45.0% |
| ! | GACCCTCTATGTAGTTTGTC+TGG | - | tig0021468:2284-2303 | Msa1391880:intron | 45.0% |
| CGCCAGACAAACTACATAGA+GGG | + | tig0021468:2289-2308 | None:intergenic | 45.0% | |
| TCGCCAGACAAACTACATAG+AGG | + | tig0021468:2290-2309 | None:intergenic | 45.0% | |
| TACATCTTTCCTCAAAGCCC+TGG | - | tig0021468:2316-2335 | Msa1391880:intron | 45.0% | |
| ACATCTTTCCTCAAAGCCCT+GGG | - | tig0021468:2317-2336 | Msa1391880:intron | 45.0% | |
| !! | ATCTGAGGGACTAGTTCCTA+TGG | - | tig0021468:2367-2386 | Msa1391880:intron | 45.0% |
| GTTCCTATGGAGATTCCCTT+TGG | - | tig0021468:2380-2399 | Msa1391880:intron | 45.0% | |
| AGACCAAAGGGAATCTCCAT+AGG | + | tig0021468:2386-2405 | None:intergenic | 45.0% | |
| AGGCGTGGAATTAGACCAAA+GGG | + | tig0021468:2398-2417 | None:intergenic | 45.0% | |
| AAGGCGTGGAATTAGACCAA+AGG | + | tig0021468:2399-2418 | None:intergenic | 45.0% | |
| ATTCCACGCCTTATGACGAA+AGG | - | tig0021468:2407-2426 | Msa1391880:intron | 45.0% | |
| CCTTATGACGAAAGGAGAGT+CGG | - | tig0021468:2415-2434 | Msa1391880:intron | 45.0% | |
| ACCTTCGGAATACCCCATAA+GGG | + | tig0021468:2481-2500 | None:intergenic | 45.0% | |
| ! | GTATTCCGAAGGTGTAACCT+AGG | - | tig0021468:2488-2507 | Msa1391880:CDS | 45.0% |
| TCCTTCCGGAATTGCGTTAT+CGG | - | tig0021468:2630-2649 | Msa1391880:CDS | 45.0% | |
| AGCATACTGCGAGTAGGAAG+TGG | + | tig0021468:1918-1937 | None:intergenic | 50.0% | |
| ! | CCTCATTGGTGATCTTACGG+GGG | - | tig0021468:2227-2246 | Msa1391880:intron | 50.0% |
| ! | CTCATTGGTGATCTTACGGG+GGG | - | tig0021468:2228-2247 | Msa1391880:intron | 50.0% |
| CATCTTTCCTCAAAGCCCTG+GGG | - | tig0021468:2318-2337 | Msa1391880:intron | 50.0% | |
| TCTCCTACGTGCGAAATCTG+AGG | - | tig0021468:2352-2371 | Msa1391880:intron | 50.0% | |
| CTCCTACGTGCGAAATCTGA+GGG | - | tig0021468:2353-2372 | Msa1391880:intron | 50.0% | |
| TCTCCTTTCGTCATAAGGCG+TGG | + | tig0021468:2413-2432 | None:intergenic | 50.0% | |
| CCGACTCTCCTTTCGTCATA+AGG | + | tig0021468:2418-2437 | None:intergenic | 50.0% | |
| ! | TCCCTTATGGGGTATTCCGA+AGG | - | tig0021468:2477-2496 | Msa1391880:CDS | 50.0% |
| CACCTTCGGAATACCCCATA+AGG | + | tig0021468:2482-2501 | None:intergenic | 50.0% | |
| CGTTGCCTAGGTTACACCTT+CGG | + | tig0021468:2496-2515 | None:intergenic | 50.0% | |
| GCTCCTCTAGTTGAAGTCTC+GGG | + | tig0021468:2532-2551 | None:intergenic | 50.0% | |
| CGCTCCTCTAGTTGAAGTCT+CGG | + | tig0021468:2533-2552 | None:intergenic | 50.0% | |
| AACGCAATTCCGGAAGGAGT+CGG | + | tig0021468:2628-2647 | None:intergenic | 50.0% | |
| TCCGATAACGCAATTCCGGA+AGG | + | tig0021468:2634-2653 | None:intergenic | 50.0% | |
| AGCATACTGCGAGTAGGAAG+TGG | + | tig0021468:1918-1937 | None:intergenic | 50.0% | |
| ! | CCTCATTGGTGATCTTACGG+GGG | - | tig0021468:2227-2246 | Msa1391880:intron | 50.0% |
| ! | CTCATTGGTGATCTTACGGG+GGG | - | tig0021468:2228-2247 | Msa1391880:intron | 50.0% |
| CATCTTTCCTCAAAGCCCTG+GGG | - | tig0021468:2318-2337 | Msa1391880:intron | 50.0% | |
| TCTCCTACGTGCGAAATCTG+AGG | - | tig0021468:2352-2371 | Msa1391880:intron | 50.0% | |
| CTCCTACGTGCGAAATCTGA+GGG | - | tig0021468:2353-2372 | Msa1391880:intron | 50.0% | |
| TCTCCTTTCGTCATAAGGCG+TGG | + | tig0021468:2413-2432 | None:intergenic | 50.0% | |
| CCGACTCTCCTTTCGTCATA+AGG | + | tig0021468:2418-2437 | None:intergenic | 50.0% | |
| ! | TCCCTTATGGGGTATTCCGA+AGG | - | tig0021468:2477-2496 | Msa1391880:CDS | 50.0% |
| CACCTTCGGAATACCCCATA+AGG | + | tig0021468:2482-2501 | None:intergenic | 50.0% | |
| CGTTGCCTAGGTTACACCTT+CGG | + | tig0021468:2496-2515 | None:intergenic | 50.0% | |
| GCTCCTCTAGTTGAAGTCTC+GGG | + | tig0021468:2532-2551 | None:intergenic | 50.0% | |
| CGCTCCTCTAGTTGAAGTCT+CGG | + | tig0021468:2533-2552 | None:intergenic | 50.0% | |
| AACGCAATTCCGGAAGGAGT+CGG | + | tig0021468:2628-2647 | None:intergenic | 50.0% | |
| TCCGATAACGCAATTCCGGA+AGG | + | tig0021468:2634-2653 | None:intergenic | 50.0% | |
| ! | ATATTTCGAGCCGGCTTCCG+TGG | + | tig0021468:2045-2064 | None:intergenic | 55.0% |
| CCCCCGTAAGATCACCAATG+AGG | + | tig0021468:2230-2249 | None:intergenic | 55.0% | |
| GTCCCTCAGATTTCGCACGT+AGG | + | tig0021468:2358-2377 | None:intergenic | 55.0% | |
| CAACTAGAGGAGCGACCAGT+TGG | - | tig0021468:2539-2558 | Msa1391880:CDS | 55.0% | |
| !! | TCGGGGTTTGGTGAACCAAC+TGG | + | tig0021468:2557-2576 | None:intergenic | 55.0% |
| !! | AGTTGGGCACTGGATCCCTT+CGG | + | tig0021468:2604-2623 | None:intergenic | 55.0% |
| TCCGGAAGGAGTCGGTAGTT+GGG | + | tig0021468:2620-2639 | None:intergenic | 55.0% | |
| TTCCGGAAGGAGTCGGTAGT+TGG | + | tig0021468:2621-2640 | None:intergenic | 55.0% | |
| CGGCTCCGATAACGCAATTC+CGG | + | tig0021468:2638-2657 | None:intergenic | 55.0% | |
| ! | ATATTTCGAGCCGGCTTCCG+TGG | + | tig0021468:2045-2064 | None:intergenic | 55.0% |
| CCCCCGTAAGATCACCAATG+AGG | + | tig0021468:2230-2249 | None:intergenic | 55.0% | |
| GTCCCTCAGATTTCGCACGT+AGG | + | tig0021468:2358-2377 | None:intergenic | 55.0% | |
| CAACTAGAGGAGCGACCAGT+TGG | - | tig0021468:2539-2558 | Msa1391880:CDS | 55.0% | |
| !! | TCGGGGTTTGGTGAACCAAC+TGG | + | tig0021468:2557-2576 | None:intergenic | 55.0% |
| !! | AGTTGGGCACTGGATCCCTT+CGG | + | tig0021468:2604-2623 | None:intergenic | 55.0% |
| TCCGGAAGGAGTCGGTAGTT+GGG | + | tig0021468:2620-2639 | None:intergenic | 55.0% | |
| TTCCGGAAGGAGTCGGTAGT+TGG | + | tig0021468:2621-2640 | None:intergenic | 55.0% | |
| CGGCTCCGATAACGCAATTC+CGG | + | tig0021468:2638-2657 | None:intergenic | 55.0% | |
| GAGATCGAGACACAGCCCCA+GGG | + | tig0021468:2336-2355 | None:intergenic | 60.0% | |
| TGACGAAAGGAGAGTCGGCG+TGG | - | tig0021468:2420-2439 | Msa1391880:intron | 60.0% | |
| GGGCCCGAGACTTCAACTAG+AGG | - | tig0021468:2526-2545 | Msa1391880:CDS | 60.0% | |
| ACGCGTTCTCCAGGTCCGAA+GGG | - | tig0021468:2586-2605 | Msa1391880:CDS | 60.0% | |
| AGGAGTCGGTAGTTGGGCAC+TGG | + | tig0021468:2614-2633 | None:intergenic | 60.0% | |
| !! | GCCCAACTACCGACTCCTTC+CGG | - | tig0021468:2616-2635 | Msa1391880:CDS | 60.0% |
| TATCGGAGCCGAGCCAGGAA+TGG | - | tig0021468:2647-2666 | Msa1391880:CDS | 60.0% | |
| GAGATCGAGACACAGCCCCA+GGG | + | tig0021468:2336-2355 | None:intergenic | 60.0% | |
| TGACGAAAGGAGAGTCGGCG+TGG | - | tig0021468:2420-2439 | Msa1391880:intron | 60.0% | |
| GGGCCCGAGACTTCAACTAG+AGG | - | tig0021468:2526-2545 | Msa1391880:CDS | 60.0% | |
| ACGCGTTCTCCAGGTCCGAA+GGG | - | tig0021468:2586-2605 | Msa1391880:CDS | 60.0% | |
| AGGAGTCGGTAGTTGGGCAC+TGG | + | tig0021468:2614-2633 | None:intergenic | 60.0% | |
| !! | GCCCAACTACCGACTCCTTC+CGG | - | tig0021468:2616-2635 | Msa1391880:CDS | 60.0% |
| TATCGGAGCCGAGCCAGGAA+TGG | - | tig0021468:2647-2666 | Msa1391880:CDS | 60.0% | |
| GACACAGCCCCAGGGCTTTG+AGG | + | tig0021468:2328-2347 | None:intergenic | 65.0% | |
| GGAGATCGAGACACAGCCCC+AGG | + | tig0021468:2337-2356 | None:intergenic | 65.0% | |
| AGAACGCGTGACGCTGGGTC+GGG | + | tig0021468:2575-2594 | None:intergenic | 65.0% | |
| GAGAACGCGTGACGCTGGGT+CGG | + | tig0021468:2576-2595 | None:intergenic | 65.0% | |
| CCTGGAGAACGCGTGACGCT+GGG | + | tig0021468:2580-2599 | None:intergenic | 65.0% | |
| ACCTGGAGAACGCGTGACGC+TGG | + | tig0021468:2581-2600 | None:intergenic | 65.0% | |
| CACGCGTTCTCCAGGTCCGA+AGG | - | tig0021468:2585-2604 | Msa1391880:CDS | 65.0% | |
| GCACTGGATCCCTTCGGACC+TGG | + | tig0021468:2598-2617 | None:intergenic | 65.0% | |
| TGCGTTATCGGAGCCGAGCC+AGG | - | tig0021468:2642-2661 | Msa1391880:CDS | 65.0% | |
| GACACAGCCCCAGGGCTTTG+AGG | + | tig0021468:2328-2347 | None:intergenic | 65.0% | |
| GGAGATCGAGACACAGCCCC+AGG | + | tig0021468:2337-2356 | None:intergenic | 65.0% | |
| AGAACGCGTGACGCTGGGTC+GGG | + | tig0021468:2575-2594 | None:intergenic | 65.0% | |
| GAGAACGCGTGACGCTGGGT+CGG | + | tig0021468:2576-2595 | None:intergenic | 65.0% | |
| CCTGGAGAACGCGTGACGCT+GGG | + | tig0021468:2580-2599 | None:intergenic | 65.0% | |
| ACCTGGAGAACGCGTGACGC+TGG | + | tig0021468:2581-2600 | None:intergenic | 65.0% | |
| CACGCGTTCTCCAGGTCCGA+AGG | - | tig0021468:2585-2604 | Msa1391880:CDS | 65.0% | |
| GCACTGGATCCCTTCGGACC+TGG | + | tig0021468:2598-2617 | None:intergenic | 65.0% | |
| TGCGTTATCGGAGCCGAGCC+AGG | - | tig0021468:2642-2661 | Msa1391880:CDS | 65.0% | |
| CGTGACGCTGGGTCGGGGTT+TGG | + | tig0021468:2569-2588 | None:intergenic | 70.0% | |
| GAACGCGTGACGCTGGGTCG+GGG | + | tig0021468:2574-2593 | None:intergenic | 70.0% | |
| CCCAGCGTCACGCGTTCTCC+AGG | - | tig0021468:2577-2596 | Msa1391880:CDS | 70.0% | |
| CGTGACGCTGGGTCGGGGTT+TGG | + | tig0021468:2569-2588 | None:intergenic | 70.0% | |
| GAACGCGTGACGCTGGGTCG+GGG | + | tig0021468:2574-2593 | None:intergenic | 70.0% | |
| CCCAGCGTCACGCGTTCTCC+AGG | - | tig0021468:2577-2596 | Msa1391880:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021468 | gene | 1855 | 2676 | 1855 | ID=Msa1391880;Name=Msa1391880 |
| tig0021468 | mRNA | 1855 | 2676 | 1855 | ID=Msa1391880-mRNA-1;Parent=Msa1391880;Name=Msa1391880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|209 |
| tig0021468 | exon | 2426 | 2676 | 2426 | ID=Msa1391880-mRNA-1:exon:12952;Parent=Msa1391880-mRNA-1 |
| tig0021468 | exon | 1855 | 2233 | 1855 | ID=Msa1391880-mRNA-1:exon:12951;Parent=Msa1391880-mRNA-1 |
| tig0021468 | CDS | 2426 | 2676 | 2426 | ID=Msa1391880-mRNA-1:cds;Parent=Msa1391880-mRNA-1 |
| tig0021468 | CDS | 1855 | 2233 | 1855 | ID=Msa1391880-mRNA-1:cds;Parent=Msa1391880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
