Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983420 | KEH37514.1 | 86.124 | 209 | 7 | 1 | 1 | 209 | 1 | 187 | 9.09e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983420 | sp|P93401|NU2M_OENBE | 87.209 | 86 | 11 | 0 | 1 | 86 | 99 | 184 | 1.69e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983420 | A0A072V639 | 86.124 | 209 | 7 | 1 | 1 | 209 | 1 | 187 | 4.34e-117 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069500 | Msa0983420 | 0.840594 | 7.914722e-58 | -8.615850e-47 |
| Msa0983350 | Msa0983420 | 0.839209 | 1.817261e-57 | -8.615850e-47 |
| Msa0983420 | Msa1391880 | 0.927093 | 1.897625e-91 | -8.615850e-47 |
| Msa0983420 | Msa1391970 | 0.842926 | 1.918106e-58 | -8.615850e-47 |
| Msa0983420 | Msa1392160 | 0.806520 | 7.905631e-50 | -8.615850e-47 |
| Msa0920000 | Msa0983420 | 0.830156 | 3.442028e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983420 | MtrunA17_Chr2g0300131 | 98.958 | 96 | 1 | 0 | 114 | 209 | 1 | 96 | 7.08e-65 | 195 |
| Msa0983420 | MtrunA17_MTg0490911 | 94.565 | 92 | 3 | 1 | 1 | 92 | 58 | 147 | 6.33e-56 | 174 |
| Msa0983420 | MtrunA17_Chr2g0300121 | 94.565 | 92 | 3 | 1 | 1 | 92 | 58 | 147 | 6.33e-56 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983420 | ATMG00285.1 | 95.181 | 83 | 4 | 0 | 1 | 83 | 110 | 192 | 2.51e-50 | 162 |
Find 61 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTAGGCAACGAAATAAAA+AGG | 0.239100 | 6_4:+26482666 | Msa0983420:CDS |
| TCCTCTGGAATCTTACTGTT+TGG | 0.240334 | 6_4:+26482245 | Msa0983420:CDS |
| CCTCTGGAATCTTACTGTTT+GGG | 0.296834 | 6_4:+26482246 | Msa0983420:CDS |
| GGCTCGAAATATTTGATCTT+AGG | 0.365069 | 6_4:+26482215 | Msa0983420:CDS |
| TCCTTCCGGAATTGCGTTAT+CGG | 0.367528 | 6_4:+26482792 | Msa0983420:CDS |
| CGCTCCTCTAGTTGAAGTCT+CGG | 0.368123 | 6_4:-26482692 | None:intergenic |
| TGTCCACTAACGGCCATTCC+TGG | 0.375822 | 6_4:-26482822 | None:intergenic |
| GTTCCTATGGAGATTCCCTT+TGG | 0.388252 | 6_4:+26482542 | Msa0983420:CDS |
| GCCCAACTACCGACTCCTTC+CGG | 0.389296 | 6_4:+26482778 | Msa0983420:CDS |
| CGGCTCCGATAACGCAATTC+CGG | 0.400282 | 6_4:-26482797 | None:intergenic |
| GGAGATCGAGACACAGCCCC+AGG | 0.437073 | 6_4:-26482496 | None:intergenic |
| TCGGGGTTTGGTGAACCAAC+TGG | 0.437317 | 6_4:-26482716 | None:intergenic |
| TTCCGGAAGGAGTCGGTAGT+TGG | 0.438956 | 6_4:-26482780 | None:intergenic |
| AGCATCAAACCTCTCTTGTT+CGG | 0.441217 | 6_4:-26482033 | None:intergenic |
| ACCTGGAGAACGCGTGACGC+TGG | 0.445890 | 6_4:-26482740 | None:intergenic |
| GACCCTCTATGTAGTTTGTC+TGG | 0.450320 | 6_4:+26482446 | Msa0983420:intron |
| TACATCTTTCCTCAAAGCCC+TGG | 0.451270 | 6_4:+26482478 | Msa0983420:CDS |
| CACCTTCGGAATACCCCATA+AGG | 0.451763 | 6_4:-26482641 | None:intergenic |
| CAGTATGCTCTTTATGATCT+CGG | 0.453627 | 6_4:+26482091 | Msa0983420:CDS |
| CGTTGCCTAGGTTACACCTT+CGG | 0.463918 | 6_4:-26482655 | None:intergenic |
| GACACAGCCCCAGGGCTTTG+AGG | 0.473185 | 6_4:-26482487 | None:intergenic |
| TCCGGAAGGAGTCGGTAGTT+GGG | 0.475847 | 6_4:-26482779 | None:intergenic |
| CACGCGTTCTCCAGGTCCGA+AGG | 0.491251 | 6_4:+26482747 | Msa0983420:CDS |
| ATATTTCGAGCCGGCTTCCG+TGG | 0.497146 | 6_4:-26482204 | None:intergenic |
| ATCTGAGGGACTAGTTCCTA+TGG | 0.500242 | 6_4:+26482529 | Msa0983420:CDS |
| GCACTGGATCCCTTCGGACC+TGG | 0.504597 | 6_4:-26482757 | None:intergenic |
| AGCATACTGCGAGTAGGAAG+TGG | 0.516788 | 6_4:-26482077 | None:intergenic |
| ACATCTTTCCTCAAAGCCCT+GGG | 0.518148 | 6_4:+26482479 | Msa0983420:CDS |
| AGGAGTCGGTAGTTGGGCAC+TGG | 0.522861 | 6_4:-26482773 | None:intergenic |
| GAGAACGCGTGACGCTGGGT+CGG | 0.530671 | 6_4:-26482735 | None:intergenic |
| AGTTGGGCACTGGATCCCTT+CGG | 0.534387 | 6_4:-26482763 | None:intergenic |
| ACTAACGGCCATTCCTGGCT+CGG | 0.539327 | 6_4:-26482817 | None:intergenic |
| CAACTAGAGGAGCGACCAGT+TGG | 0.547893 | 6_4:+26482701 | Msa0983420:CDS |
| AGGCGTGGAATTAGACCAAA+GGG | 0.552759 | 6_4:-26482557 | None:intergenic |
| TCCCTTATGGGGTATTCCGA+AGG | 0.555293 | 6_4:+26482639 | Msa0983420:CDS |
| TCTCCTACGTGCGAAATCTG+AGG | 0.556024 | 6_4:+26482514 | Msa0983420:CDS |
| TATCGGAGCCGAGCCAGGAA+TGG | 0.558454 | 6_4:+26482809 | Msa0983420:CDS |
| ACCTTCGGAATACCCCATAA+GGG | 0.560916 | 6_4:-26482640 | None:intergenic |
| TGGCGTAAAGTTAAGATTGA+GGG | 0.563844 | 6_4:+26482602 | Msa0983420:CDS |
| AGACCAAAGGGAATCTCCAT+AGG | 0.564375 | 6_4:-26482545 | None:intergenic |
| GCTCCTCTAGTTGAAGTCTC+GGG | 0.575993 | 6_4:-26482691 | None:intergenic |
| TAAGATCAAATATTTCGAGC+CGG | 0.582354 | 6_4:-26482213 | None:intergenic |
| AACGCAATTCCGGAAGGAGT+CGG | 0.583964 | 6_4:-26482787 | None:intergenic |
| CTCCTACGTGCGAAATCTGA+GGG | 0.592544 | 6_4:+26482515 | Msa0983420:CDS |
| TCGATTCTTCCGAACAAGAG+AGG | 0.595618 | 6_4:+26482024 | Msa0983420:CDS |
| AGGCTCAATAGCTAAATACA+TGG | 0.597655 | 6_4:-26482129 | None:intergenic |
| GTGGCGTAAAGTTAAGATTG+AGG | 0.608450 | 6_4:+26482601 | Msa0983420:CDS |
| TCTCCTTTCGTCATAAGGCG+TGG | 0.619086 | 6_4:-26482572 | None:intergenic |
| TCCGATAACGCAATTCCGGA+AGG | 0.619473 | 6_4:-26482793 | None:intergenic |
| ACGCGTTCTCCAGGTCCGAA+GGG | 0.629117 | 6_4:+26482748 | Msa0983420:CDS |
| ATAAAGAGCATACTGCGAGT+AGG | 0.631166 | 6_4:-26482083 | None:intergenic |
| GTATTCCGAAGGTGTAACCT+AGG | 0.639271 | 6_4:+26482650 | Msa0983420:CDS |
| ATTCCACGCCTTATGACGAA+AGG | 0.640668 | 6_4:+26482569 | Msa0983420:CDS |
| AAGGCGTGGAATTAGACCAA+AGG | 0.643439 | 6_4:-26482558 | None:intergenic |
| CATCTTTCCTCAAAGCCCTG+GGG | 0.665082 | 6_4:+26482480 | Msa0983420:CDS |
| CCTTATGACGAAAGGAGAGT+CGG | 0.668549 | 6_4:+26482577 | Msa0983420:CDS |
| CCCAAACAGTAAGATTCCAG+AGG | 0.678155 | 6_4:-26482246 | None:intergenic |
| TGACGAAAGGAGAGTCGGCG+TGG | 0.679756 | 6_4:+26482582 | Msa0983420:CDS |
| GAGATCGAGACACAGCCCCA+GGG | 0.692823 | 6_4:-26482495 | None:intergenic |
| GGGCCCGAGACTTCAACTAG+AGG | 0.695733 | 6_4:+26482688 | Msa0983420:CDS |
| GTCCCTCAGATTTCGCACGT+AGG | 0.750430 | 6_4:-26482517 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATATCGTAAACTAT+CGG | + | chr6_4:26482329-26482348 | Msa0983420:intron | 15.0% |
| !! | AAATATATATCGTAAACTAT+CGG | + | chr6_4:26482329-26482348 | Msa0983420:intron | 15.0% |
| !! | ACATAAAAACATAAACTTTG+AGG | - | chr6_4:26482152-26482171 | None:intergenic | 20.0% |
| !!! | AAGTTTATGTTTTTATGTGA+TGG | + | chr6_4:26482154-26482173 | Msa0983420:CDS | 20.0% |
| !!! | GAAAGGATATTTTTAGATAT+CGG | - | chr6_4:26482288-26482307 | None:intergenic | 20.0% |
| !! | ACATAAAAACATAAACTTTG+AGG | - | chr6_4:26482152-26482171 | None:intergenic | 20.0% |
| !!! | AAGTTTATGTTTTTATGTGA+TGG | + | chr6_4:26482154-26482173 | Msa0983420:CDS | 20.0% |
| !!! | GAAAGGATATTTTTAGATAT+CGG | - | chr6_4:26482288-26482307 | None:intergenic | 20.0% |
| ! | AATAGAGAAAAATTCCCTTA+TGG | + | chr6_4:26482626-26482645 | Msa0983420:CDS | 25.0% |
| ! | ATAGAGAAAAATTCCCTTAT+GGG | + | chr6_4:26482627-26482646 | Msa0983420:CDS | 25.0% |
| ! | AATAGAGAAAAATTCCCTTA+TGG | + | chr6_4:26482626-26482645 | Msa0983420:CDS | 25.0% |
| ! | ATAGAGAAAAATTCCCTTAT+GGG | + | chr6_4:26482627-26482646 | Msa0983420:CDS | 25.0% |
| ! | AAGAAAGTCTGAATTTTCCA+CGG | + | chr6_4:26482187-26482206 | Msa0983420:CDS | 30.0% |
| TAAGATCAAATATTTCGAGC+CGG | - | chr6_4:26482216-26482235 | None:intergenic | 30.0% | |
| ACAACATTCTAAGCTAAGAA+AGG | - | chr6_4:26482305-26482324 | None:intergenic | 30.0% | |
| TATATCGTAAACTATCGGAT+CGG | + | chr6_4:26482334-26482353 | Msa0983420:intron | 30.0% | |
| TAGAGAAAAATTCCCTTATG+GGG | + | chr6_4:26482628-26482647 | Msa0983420:CDS | 30.0% | |
| ! | AAGAAAGTCTGAATTTTCCA+CGG | + | chr6_4:26482187-26482206 | Msa0983420:CDS | 30.0% |
| TAAGATCAAATATTTCGAGC+CGG | - | chr6_4:26482216-26482235 | None:intergenic | 30.0% | |
| ACAACATTCTAAGCTAAGAA+AGG | - | chr6_4:26482305-26482324 | None:intergenic | 30.0% | |
| TATATCGTAAACTATCGGAT+CGG | + | chr6_4:26482334-26482353 | Msa0983420:intron | 30.0% | |
| TAGAGAAAAATTCCCTTATG+GGG | + | chr6_4:26482628-26482647 | Msa0983420:CDS | 30.0% | |
| CAGTATGCTCTTTATGATCT+CGG | + | chr6_4:26482091-26482110 | Msa0983420:CDS | 35.0% | |
| AGGCTCAATAGCTAAATACA+TGG | - | chr6_4:26482132-26482151 | None:intergenic | 35.0% | |
| GGCTCGAAATATTTGATCTT+AGG | + | chr6_4:26482215-26482234 | Msa0983420:CDS | 35.0% | |
| TTTAGATATCGGTAGTTGTC+CGG | - | chr6_4:26482277-26482296 | None:intergenic | 35.0% | |
| ATATCGTAAACTATCGGATC+GGG | + | chr6_4:26482335-26482354 | Msa0983420:intron | 35.0% | |
| TGGCGTAAAGTTAAGATTGA+GGG | + | chr6_4:26482602-26482621 | Msa0983420:CDS | 35.0% | |
| ACCTAGGCAACGAAATAAAA+AGG | + | chr6_4:26482666-26482685 | Msa0983420:CDS | 35.0% | |
| CCTAGGCAACGAAATAAAAA+GGG | + | chr6_4:26482667-26482686 | Msa0983420:CDS | 35.0% | |
| CTAGGCAACGAAATAAAAAG+GGG | + | chr6_4:26482668-26482687 | Msa0983420:CDS | 35.0% | |
| CAGTATGCTCTTTATGATCT+CGG | + | chr6_4:26482091-26482110 | Msa0983420:CDS | 35.0% | |
| AGGCTCAATAGCTAAATACA+TGG | - | chr6_4:26482132-26482151 | None:intergenic | 35.0% | |
| GGCTCGAAATATTTGATCTT+AGG | + | chr6_4:26482215-26482234 | Msa0983420:CDS | 35.0% | |
| TTTAGATATCGGTAGTTGTC+CGG | - | chr6_4:26482277-26482296 | None:intergenic | 35.0% | |
| ATATCGTAAACTATCGGATC+GGG | + | chr6_4:26482335-26482354 | Msa0983420:intron | 35.0% | |
| TGGCGTAAAGTTAAGATTGA+GGG | + | chr6_4:26482602-26482621 | Msa0983420:CDS | 35.0% | |
| ACCTAGGCAACGAAATAAAA+AGG | + | chr6_4:26482666-26482685 | Msa0983420:CDS | 35.0% | |
| CCTAGGCAACGAAATAAAAA+GGG | + | chr6_4:26482667-26482686 | Msa0983420:CDS | 35.0% | |
| CTAGGCAACGAAATAAAAAG+GGG | + | chr6_4:26482668-26482687 | Msa0983420:CDS | 35.0% | |
| AGCATCAAACCTCTCTTGTT+CGG | - | chr6_4:26482036-26482055 | None:intergenic | 40.0% | |
| ! | ATAAAGAGCATACTGCGAGT+AGG | - | chr6_4:26482086-26482105 | None:intergenic | 40.0% |
| ! | ATCTTAGGTGCATTTTCCTC+TGG | + | chr6_4:26482230-26482249 | Msa0983420:CDS | 40.0% |
| !! | TCCTCTGGAATCTTACTGTT+TGG | + | chr6_4:26482245-26482264 | Msa0983420:CDS | 40.0% |
| !! | CCTCTGGAATCTTACTGTTT+GGG | + | chr6_4:26482246-26482265 | Msa0983420:CDS | 40.0% |
| ! | AGACCTCATTGGTGATCTTA+CGG | + | chr6_4:26482386-26482405 | Msa0983420:intron | 40.0% |
| GTGGCGTAAAGTTAAGATTG+AGG | + | chr6_4:26482601-26482620 | Msa0983420:CDS | 40.0% | |
| !! | CCCTTTTTATTTCGTTGCCT+AGG | - | chr6_4:26482670-26482689 | None:intergenic | 40.0% |
| AGCATCAAACCTCTCTTGTT+CGG | - | chr6_4:26482036-26482055 | None:intergenic | 40.0% | |
| ! | ATAAAGAGCATACTGCGAGT+AGG | - | chr6_4:26482086-26482105 | None:intergenic | 40.0% |
| ! | ATCTTAGGTGCATTTTCCTC+TGG | + | chr6_4:26482230-26482249 | Msa0983420:CDS | 40.0% |
| !! | TCCTCTGGAATCTTACTGTT+TGG | + | chr6_4:26482245-26482264 | Msa0983420:CDS | 40.0% |
| !! | CCTCTGGAATCTTACTGTTT+GGG | + | chr6_4:26482246-26482265 | Msa0983420:CDS | 40.0% |
| ! | AGACCTCATTGGTGATCTTA+CGG | + | chr6_4:26482386-26482405 | Msa0983420:intron | 40.0% |
| GTGGCGTAAAGTTAAGATTG+AGG | + | chr6_4:26482601-26482620 | Msa0983420:CDS | 40.0% | |
| !! | CCCTTTTTATTTCGTTGCCT+AGG | - | chr6_4:26482670-26482689 | None:intergenic | 40.0% |
| TCGATTCTTCCGAACAAGAG+AGG | + | chr6_4:26482024-26482043 | Msa0983420:CDS | 45.0% | |
| ! | TCTGAATTTTCCACGGAAGC+CGG | + | chr6_4:26482194-26482213 | Msa0983420:CDS | 45.0% |
| CCCAAACAGTAAGATTCCAG+AGG | - | chr6_4:26482249-26482268 | None:intergenic | 45.0% | |
| TCTTACTGTTTGGGTACGAC+CGG | + | chr6_4:26482255-26482274 | Msa0983420:intron | 45.0% | |
| GTGAAACTTGCAGACCTCAT+TGG | + | chr6_4:26482375-26482394 | Msa0983420:intron | 45.0% | |
| ! | GACCTCATTGGTGATCTTAC+GGG | + | chr6_4:26482387-26482406 | Msa0983420:intron | 45.0% |
| ! | ACCTCATTGGTGATCTTACG+GGG | + | chr6_4:26482388-26482407 | Msa0983420:intron | 45.0% |
| ! | GACCCTCTATGTAGTTTGTC+TGG | + | chr6_4:26482446-26482465 | Msa0983420:intron | 45.0% |
| CGCCAGACAAACTACATAGA+GGG | - | chr6_4:26482451-26482470 | None:intergenic | 45.0% | |
| TCGCCAGACAAACTACATAG+AGG | - | chr6_4:26482452-26482471 | None:intergenic | 45.0% | |
| TACATCTTTCCTCAAAGCCC+TGG | + | chr6_4:26482478-26482497 | Msa0983420:CDS | 45.0% | |
| ACATCTTTCCTCAAAGCCCT+GGG | + | chr6_4:26482479-26482498 | Msa0983420:CDS | 45.0% | |
| !! | ATCTGAGGGACTAGTTCCTA+TGG | + | chr6_4:26482529-26482548 | Msa0983420:CDS | 45.0% |
| GTTCCTATGGAGATTCCCTT+TGG | + | chr6_4:26482542-26482561 | Msa0983420:CDS | 45.0% | |
| AGACCAAAGGGAATCTCCAT+AGG | - | chr6_4:26482548-26482567 | None:intergenic | 45.0% | |
| AGGCGTGGAATTAGACCAAA+GGG | - | chr6_4:26482560-26482579 | None:intergenic | 45.0% | |
| AAGGCGTGGAATTAGACCAA+AGG | - | chr6_4:26482561-26482580 | None:intergenic | 45.0% | |
| ATTCCACGCCTTATGACGAA+AGG | + | chr6_4:26482569-26482588 | Msa0983420:CDS | 45.0% | |
| CCTTATGACGAAAGGAGAGT+CGG | + | chr6_4:26482577-26482596 | Msa0983420:CDS | 45.0% | |
| ACCTTCGGAATACCCCATAA+GGG | - | chr6_4:26482643-26482662 | None:intergenic | 45.0% | |
| ! | GTATTCCGAAGGTGTAACCT+AGG | + | chr6_4:26482650-26482669 | Msa0983420:CDS | 45.0% |
| TCCTTCCGGAATTGCGTTAT+CGG | + | chr6_4:26482792-26482811 | Msa0983420:CDS | 45.0% | |
| TCGATTCTTCCGAACAAGAG+AGG | + | chr6_4:26482024-26482043 | Msa0983420:CDS | 45.0% | |
| ! | TCTGAATTTTCCACGGAAGC+CGG | + | chr6_4:26482194-26482213 | Msa0983420:CDS | 45.0% |
| CCCAAACAGTAAGATTCCAG+AGG | - | chr6_4:26482249-26482268 | None:intergenic | 45.0% | |
| TCTTACTGTTTGGGTACGAC+CGG | + | chr6_4:26482255-26482274 | Msa0983420:intron | 45.0% | |
| GTGAAACTTGCAGACCTCAT+TGG | + | chr6_4:26482375-26482394 | Msa0983420:intron | 45.0% | |
| ! | GACCTCATTGGTGATCTTAC+GGG | + | chr6_4:26482387-26482406 | Msa0983420:intron | 45.0% |
| ! | ACCTCATTGGTGATCTTACG+GGG | + | chr6_4:26482388-26482407 | Msa0983420:intron | 45.0% |
| ! | GACCCTCTATGTAGTTTGTC+TGG | + | chr6_4:26482446-26482465 | Msa0983420:intron | 45.0% |
| CGCCAGACAAACTACATAGA+GGG | - | chr6_4:26482451-26482470 | None:intergenic | 45.0% | |
| TCGCCAGACAAACTACATAG+AGG | - | chr6_4:26482452-26482471 | None:intergenic | 45.0% | |
| TACATCTTTCCTCAAAGCCC+TGG | + | chr6_4:26482478-26482497 | Msa0983420:CDS | 45.0% | |
| ACATCTTTCCTCAAAGCCCT+GGG | + | chr6_4:26482479-26482498 | Msa0983420:CDS | 45.0% | |
| !! | ATCTGAGGGACTAGTTCCTA+TGG | + | chr6_4:26482529-26482548 | Msa0983420:CDS | 45.0% |
| GTTCCTATGGAGATTCCCTT+TGG | + | chr6_4:26482542-26482561 | Msa0983420:CDS | 45.0% | |
| AGACCAAAGGGAATCTCCAT+AGG | - | chr6_4:26482548-26482567 | None:intergenic | 45.0% | |
| AGGCGTGGAATTAGACCAAA+GGG | - | chr6_4:26482560-26482579 | None:intergenic | 45.0% | |
| AAGGCGTGGAATTAGACCAA+AGG | - | chr6_4:26482561-26482580 | None:intergenic | 45.0% | |
| ATTCCACGCCTTATGACGAA+AGG | + | chr6_4:26482569-26482588 | Msa0983420:CDS | 45.0% | |
| CCTTATGACGAAAGGAGAGT+CGG | + | chr6_4:26482577-26482596 | Msa0983420:CDS | 45.0% | |
| ACCTTCGGAATACCCCATAA+GGG | - | chr6_4:26482643-26482662 | None:intergenic | 45.0% | |
| ! | GTATTCCGAAGGTGTAACCT+AGG | + | chr6_4:26482650-26482669 | Msa0983420:CDS | 45.0% |
| TCCTTCCGGAATTGCGTTAT+CGG | + | chr6_4:26482792-26482811 | Msa0983420:CDS | 45.0% | |
| AGCATACTGCGAGTAGGAAG+TGG | - | chr6_4:26482080-26482099 | None:intergenic | 50.0% | |
| ! | CCTCATTGGTGATCTTACGG+GGG | + | chr6_4:26482389-26482408 | Msa0983420:intron | 50.0% |
| ! | CTCATTGGTGATCTTACGGG+GGG | + | chr6_4:26482390-26482409 | Msa0983420:intron | 50.0% |
| CATCTTTCCTCAAAGCCCTG+GGG | + | chr6_4:26482480-26482499 | Msa0983420:CDS | 50.0% | |
| TCTCCTACGTGCGAAATCTG+AGG | + | chr6_4:26482514-26482533 | Msa0983420:CDS | 50.0% | |
| CTCCTACGTGCGAAATCTGA+GGG | + | chr6_4:26482515-26482534 | Msa0983420:CDS | 50.0% | |
| TCTCCTTTCGTCATAAGGCG+TGG | - | chr6_4:26482575-26482594 | None:intergenic | 50.0% | |
| CCGACTCTCCTTTCGTCATA+AGG | - | chr6_4:26482580-26482599 | None:intergenic | 50.0% | |
| ! | TCCCTTATGGGGTATTCCGA+AGG | + | chr6_4:26482639-26482658 | Msa0983420:CDS | 50.0% |
| CACCTTCGGAATACCCCATA+AGG | - | chr6_4:26482644-26482663 | None:intergenic | 50.0% | |
| CGTTGCCTAGGTTACACCTT+CGG | - | chr6_4:26482658-26482677 | None:intergenic | 50.0% | |
| GCTCCTCTAGTTGAAGTCTC+GGG | - | chr6_4:26482694-26482713 | None:intergenic | 50.0% | |
| CGCTCCTCTAGTTGAAGTCT+CGG | - | chr6_4:26482695-26482714 | None:intergenic | 50.0% | |
| AACGCAATTCCGGAAGGAGT+CGG | - | chr6_4:26482790-26482809 | None:intergenic | 50.0% | |
| TCCGATAACGCAATTCCGGA+AGG | - | chr6_4:26482796-26482815 | None:intergenic | 50.0% | |
| AGCATACTGCGAGTAGGAAG+TGG | - | chr6_4:26482080-26482099 | None:intergenic | 50.0% | |
| ! | CCTCATTGGTGATCTTACGG+GGG | + | chr6_4:26482389-26482408 | Msa0983420:intron | 50.0% |
| ! | CTCATTGGTGATCTTACGGG+GGG | + | chr6_4:26482390-26482409 | Msa0983420:intron | 50.0% |
| CATCTTTCCTCAAAGCCCTG+GGG | + | chr6_4:26482480-26482499 | Msa0983420:CDS | 50.0% | |
| TCTCCTACGTGCGAAATCTG+AGG | + | chr6_4:26482514-26482533 | Msa0983420:CDS | 50.0% | |
| CTCCTACGTGCGAAATCTGA+GGG | + | chr6_4:26482515-26482534 | Msa0983420:CDS | 50.0% | |
| TCTCCTTTCGTCATAAGGCG+TGG | - | chr6_4:26482575-26482594 | None:intergenic | 50.0% | |
| CCGACTCTCCTTTCGTCATA+AGG | - | chr6_4:26482580-26482599 | None:intergenic | 50.0% | |
| ! | TCCCTTATGGGGTATTCCGA+AGG | + | chr6_4:26482639-26482658 | Msa0983420:CDS | 50.0% |
| CACCTTCGGAATACCCCATA+AGG | - | chr6_4:26482644-26482663 | None:intergenic | 50.0% | |
| CGTTGCCTAGGTTACACCTT+CGG | - | chr6_4:26482658-26482677 | None:intergenic | 50.0% | |
| GCTCCTCTAGTTGAAGTCTC+GGG | - | chr6_4:26482694-26482713 | None:intergenic | 50.0% | |
| CGCTCCTCTAGTTGAAGTCT+CGG | - | chr6_4:26482695-26482714 | None:intergenic | 50.0% | |
| AACGCAATTCCGGAAGGAGT+CGG | - | chr6_4:26482790-26482809 | None:intergenic | 50.0% | |
| TCCGATAACGCAATTCCGGA+AGG | - | chr6_4:26482796-26482815 | None:intergenic | 50.0% | |
| ! | ATATTTCGAGCCGGCTTCCG+TGG | - | chr6_4:26482207-26482226 | None:intergenic | 55.0% |
| CCCCCGTAAGATCACCAATG+AGG | - | chr6_4:26482392-26482411 | None:intergenic | 55.0% | |
| GTCCCTCAGATTTCGCACGT+AGG | - | chr6_4:26482520-26482539 | None:intergenic | 55.0% | |
| CAACTAGAGGAGCGACCAGT+TGG | + | chr6_4:26482701-26482720 | Msa0983420:CDS | 55.0% | |
| !! | TCGGGGTTTGGTGAACCAAC+TGG | - | chr6_4:26482719-26482738 | None:intergenic | 55.0% |
| !! | AGTTGGGCACTGGATCCCTT+CGG | - | chr6_4:26482766-26482785 | None:intergenic | 55.0% |
| TCCGGAAGGAGTCGGTAGTT+GGG | - | chr6_4:26482782-26482801 | None:intergenic | 55.0% | |
| TTCCGGAAGGAGTCGGTAGT+TGG | - | chr6_4:26482783-26482802 | None:intergenic | 55.0% | |
| CGGCTCCGATAACGCAATTC+CGG | - | chr6_4:26482800-26482819 | None:intergenic | 55.0% | |
| ! | ATATTTCGAGCCGGCTTCCG+TGG | - | chr6_4:26482207-26482226 | None:intergenic | 55.0% |
| CCCCCGTAAGATCACCAATG+AGG | - | chr6_4:26482392-26482411 | None:intergenic | 55.0% | |
| GTCCCTCAGATTTCGCACGT+AGG | - | chr6_4:26482520-26482539 | None:intergenic | 55.0% | |
| CAACTAGAGGAGCGACCAGT+TGG | + | chr6_4:26482701-26482720 | Msa0983420:CDS | 55.0% | |
| !! | TCGGGGTTTGGTGAACCAAC+TGG | - | chr6_4:26482719-26482738 | None:intergenic | 55.0% |
| !! | AGTTGGGCACTGGATCCCTT+CGG | - | chr6_4:26482766-26482785 | None:intergenic | 55.0% |
| TCCGGAAGGAGTCGGTAGTT+GGG | - | chr6_4:26482782-26482801 | None:intergenic | 55.0% | |
| TTCCGGAAGGAGTCGGTAGT+TGG | - | chr6_4:26482783-26482802 | None:intergenic | 55.0% | |
| CGGCTCCGATAACGCAATTC+CGG | - | chr6_4:26482800-26482819 | None:intergenic | 55.0% | |
| GAGATCGAGACACAGCCCCA+GGG | - | chr6_4:26482498-26482517 | None:intergenic | 60.0% | |
| TGACGAAAGGAGAGTCGGCG+TGG | + | chr6_4:26482582-26482601 | Msa0983420:CDS | 60.0% | |
| GGGCCCGAGACTTCAACTAG+AGG | + | chr6_4:26482688-26482707 | Msa0983420:CDS | 60.0% | |
| ACGCGTTCTCCAGGTCCGAA+GGG | + | chr6_4:26482748-26482767 | Msa0983420:CDS | 60.0% | |
| AGGAGTCGGTAGTTGGGCAC+TGG | - | chr6_4:26482776-26482795 | None:intergenic | 60.0% | |
| !! | GCCCAACTACCGACTCCTTC+CGG | + | chr6_4:26482778-26482797 | Msa0983420:CDS | 60.0% |
| TATCGGAGCCGAGCCAGGAA+TGG | + | chr6_4:26482809-26482828 | Msa0983420:CDS | 60.0% | |
| GAGATCGAGACACAGCCCCA+GGG | - | chr6_4:26482498-26482517 | None:intergenic | 60.0% | |
| TGACGAAAGGAGAGTCGGCG+TGG | + | chr6_4:26482582-26482601 | Msa0983420:CDS | 60.0% | |
| GGGCCCGAGACTTCAACTAG+AGG | + | chr6_4:26482688-26482707 | Msa0983420:CDS | 60.0% | |
| ACGCGTTCTCCAGGTCCGAA+GGG | + | chr6_4:26482748-26482767 | Msa0983420:CDS | 60.0% | |
| AGGAGTCGGTAGTTGGGCAC+TGG | - | chr6_4:26482776-26482795 | None:intergenic | 60.0% | |
| !! | GCCCAACTACCGACTCCTTC+CGG | + | chr6_4:26482778-26482797 | Msa0983420:CDS | 60.0% |
| TATCGGAGCCGAGCCAGGAA+TGG | + | chr6_4:26482809-26482828 | Msa0983420:CDS | 60.0% | |
| GACACAGCCCCAGGGCTTTG+AGG | - | chr6_4:26482490-26482509 | None:intergenic | 65.0% | |
| GGAGATCGAGACACAGCCCC+AGG | - | chr6_4:26482499-26482518 | None:intergenic | 65.0% | |
| AGAACGCGTGACGCTGGGTC+GGG | - | chr6_4:26482737-26482756 | None:intergenic | 65.0% | |
| GAGAACGCGTGACGCTGGGT+CGG | - | chr6_4:26482738-26482757 | None:intergenic | 65.0% | |
| CCTGGAGAACGCGTGACGCT+GGG | - | chr6_4:26482742-26482761 | None:intergenic | 65.0% | |
| ACCTGGAGAACGCGTGACGC+TGG | - | chr6_4:26482743-26482762 | None:intergenic | 65.0% | |
| CACGCGTTCTCCAGGTCCGA+AGG | + | chr6_4:26482747-26482766 | Msa0983420:CDS | 65.0% | |
| GCACTGGATCCCTTCGGACC+TGG | - | chr6_4:26482760-26482779 | None:intergenic | 65.0% | |
| TGCGTTATCGGAGCCGAGCC+AGG | + | chr6_4:26482804-26482823 | Msa0983420:CDS | 65.0% | |
| GACACAGCCCCAGGGCTTTG+AGG | - | chr6_4:26482490-26482509 | None:intergenic | 65.0% | |
| GGAGATCGAGACACAGCCCC+AGG | - | chr6_4:26482499-26482518 | None:intergenic | 65.0% | |
| AGAACGCGTGACGCTGGGTC+GGG | - | chr6_4:26482737-26482756 | None:intergenic | 65.0% | |
| GAGAACGCGTGACGCTGGGT+CGG | - | chr6_4:26482738-26482757 | None:intergenic | 65.0% | |
| CCTGGAGAACGCGTGACGCT+GGG | - | chr6_4:26482742-26482761 | None:intergenic | 65.0% | |
| ACCTGGAGAACGCGTGACGC+TGG | - | chr6_4:26482743-26482762 | None:intergenic | 65.0% | |
| CACGCGTTCTCCAGGTCCGA+AGG | + | chr6_4:26482747-26482766 | Msa0983420:CDS | 65.0% | |
| GCACTGGATCCCTTCGGACC+TGG | - | chr6_4:26482760-26482779 | None:intergenic | 65.0% | |
| TGCGTTATCGGAGCCGAGCC+AGG | + | chr6_4:26482804-26482823 | Msa0983420:CDS | 65.0% | |
| CGTGACGCTGGGTCGGGGTT+TGG | - | chr6_4:26482731-26482750 | None:intergenic | 70.0% | |
| GAACGCGTGACGCTGGGTCG+GGG | - | chr6_4:26482736-26482755 | None:intergenic | 70.0% | |
| CCCAGCGTCACGCGTTCTCC+AGG | + | chr6_4:26482739-26482758 | Msa0983420:CDS | 70.0% | |
| CGTGACGCTGGGTCGGGGTT+TGG | - | chr6_4:26482731-26482750 | None:intergenic | 70.0% | |
| GAACGCGTGACGCTGGGTCG+GGG | - | chr6_4:26482736-26482755 | None:intergenic | 70.0% | |
| CCCAGCGTCACGCGTTCTCC+AGG | + | chr6_4:26482739-26482758 | Msa0983420:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 26482017 | 26482838 | 26482017 | ID=Msa0983420;Name=Msa0983420 |
| chr6_4 | mRNA | 26482017 | 26482838 | 26482017 | ID=Msa0983420-mRNA-1;Parent=Msa0983420;Name=Msa0983420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|209 |
| chr6_4 | exon | 26482017 | 26482267 | 26482017 | ID=Msa0983420-mRNA-1:exon:7414;Parent=Msa0983420-mRNA-1 |
| chr6_4 | exon | 26482460 | 26482838 | 26482460 | ID=Msa0983420-mRNA-1:exon:7415;Parent=Msa0983420-mRNA-1 |
| chr6_4 | CDS | 26482017 | 26482267 | 26482017 | ID=Msa0983420-mRNA-1:cds;Parent=Msa0983420-mRNA-1 |
| chr6_4 | CDS | 26482460 | 26482838 | 26482460 | ID=Msa0983420-mRNA-1:cds;Parent=Msa0983420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
