Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393970 | XP_013467020.1 | 96.400 | 250 | 9 | 0 | 1 | 250 | 1 | 250 | 1.76e-179 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393970 | sp|P24805|TSJT1_TOBAC | 41.892 | 148 | 84 | 1 | 1 | 146 | 1 | 148 | 7.80e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393970 | A0A072VSE8 | 96.400 | 250 | 9 | 0 | 1 | 250 | 1 | 250 | 8.42e-180 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064520 | Msa1393970 | 0.949051 | 2.775334e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393970 | MtrunA17_Chr1g0166351 | 96.400 | 250 | 9 | 0 | 1 | 250 | 1 | 250 | 0.0 | 503 |
| Msa1393970 | MtrunA17_Chr1g0204611 | 81.928 | 249 | 45 | 0 | 1 | 249 | 1 | 249 | 1.46e-156 | 434 |
| Msa1393970 | MtrunA17_Chr2g0281901 | 46.400 | 250 | 130 | 3 | 1 | 248 | 1 | 248 | 6.53e-82 | 246 |
| Msa1393970 | MtrunA17_Chr4g0047531 | 46.586 | 249 | 127 | 4 | 1 | 245 | 64 | 310 | 3.25e-75 | 231 |
| Msa1393970 | MtrunA17_Chr2g0317901 | 47.809 | 251 | 122 | 4 | 1 | 246 | 1 | 247 | 2.62e-74 | 226 |
| Msa1393970 | MtrunA17_Chr2g0287871 | 46.957 | 230 | 118 | 3 | 1 | 228 | 1 | 228 | 9.88e-73 | 222 |
| Msa1393970 | MtrunA17_Chr4g0065571 | 45.022 | 231 | 122 | 3 | 1 | 228 | 1 | 229 | 7.08e-67 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393970 | AT3G22850.1 | 69.880 | 249 | 73 | 1 | 1 | 249 | 1 | 247 | 4.38e-133 | 375 |
| Msa1393970 | AT5G43830.1 | 69.600 | 250 | 75 | 1 | 1 | 249 | 1 | 250 | 1.48e-130 | 369 |
| Msa1393970 | AT4G27450.1 | 46.304 | 257 | 120 | 4 | 1 | 247 | 1 | 249 | 8.16e-81 | 243 |
| Msa1393970 | AT3G15450.1 | 46.215 | 251 | 128 | 4 | 1 | 247 | 1 | 248 | 7.27e-79 | 238 |
| Msa1393970 | AT5G19140.1 | 47.826 | 230 | 116 | 3 | 1 | 228 | 1 | 228 | 1.35e-74 | 227 |
| Msa1393970 | AT5G19140.2 | 45.217 | 230 | 110 | 4 | 1 | 228 | 1 | 216 | 9.87e-66 | 204 |
| Msa1393970 | AT5G19140.3 | 52.326 | 172 | 79 | 2 | 58 | 228 | 23 | 192 | 7.90e-62 | 193 |
| Msa1393970 | AT3G15450.2 | 44.271 | 192 | 102 | 3 | 1 | 188 | 1 | 191 | 8.40e-54 | 173 |
| Msa1393970 | AT3G15450.3 | 42.771 | 166 | 90 | 3 | 1 | 162 | 1 | 165 | 3.17e-41 | 140 |
Find 55 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTAAACCCTCTGGACTTT+TGG | 0.233411 | tig0021771:-16655 | None:intergenic |
| AGCATCAATTCCCCAGAAAA+AGG | 0.236259 | tig0021771:-18688 | None:intergenic |
| GATGAAACTGAGTTTGATTC+TGG | 0.248097 | tig0021771:-16681 | None:intergenic |
| AAATCATGTGACTACCTTTA+GGG | 0.291576 | tig0021771:-18782 | None:intergenic |
| TCACCAGAACTATCAATTCT+TGG | 0.292250 | tig0021771:-19518 | None:intergenic |
| CCATTGTCATAGAGGCTTAC+AGG | 0.301949 | tig0021771:+18443 | Msa1393970:CDS |
| GCTAATCTTAAACAACAATA+TGG | 0.304844 | tig0021771:+18394 | Msa1393970:CDS |
| GAACTATCAATTCTTGGTAT+TGG | 0.316938 | tig0021771:-19512 | None:intergenic |
| GGATGCTTCTTTACAACATC+TGG | 0.326286 | tig0021771:+19449 | Msa1393970:intron |
| CATTTGTTCCTGTTATAATC+TGG | 0.333403 | tig0021771:+19677 | Msa1393970:three_prime_UTR |
| ATAATATCAACTTTCGCTCT+TGG | 0.352977 | tig0021771:+19753 | Msa1393970:three_prime_UTR |
| TAGCCTCACCAGATTATAAC+AGG | 0.384940 | tig0021771:-19685 | None:intergenic |
| TCGCAGGCTGTTTGCGGTTG+TGG | 0.387192 | tig0021771:+18330 | Msa1393970:intron |
| ATTGATACCTTGGAAGTAAA+GGG | 0.399756 | tig0021771:-16812 | None:intergenic |
| CCATGTTCGCAGGCTGTTTG+CGG | 0.401263 | tig0021771:+18324 | Msa1393970:intron |
| ATACCAAGAATTGATAGTTC+TGG | 0.413580 | tig0021771:+19515 | Msa1393970:CDS |
| GACATCTTCTGCTTGTTTCA+CGG | 0.416703 | tig0021771:+18355 | Msa1393970:CDS |
| GAGTTGGTAGTGCTGCTAAC+TGG | 0.444345 | tig0021771:+19603 | Msa1393970:CDS |
| TTACAACATCTGGAGGTTTG+AGG | 0.452208 | tig0021771:+19459 | Msa1393970:CDS |
| AGATAAATGCAAATTTGCCT+TGG | 0.457772 | tig0021771:-18516 | None:intergenic |
| AGATTAAGAGTAACAGAAGA+AGG | 0.477662 | tig0021771:-16747 | None:intergenic |
| GATTGATACCTTGGAAGTAA+AGG | 0.479097 | tig0021771:-16813 | None:intergenic |
| CTGTTAATGTGATGGATACT+TGG | 0.491330 | tig0021771:+19858 | Msa1393970:three_prime_UTR |
| AAAACAACCCTTTACTTCCA+AGG | 0.510463 | tig0021771:+16805 | Msa1393970:CDS |
| ATCACATTAACAGTTTATGC+AGG | 0.510474 | tig0021771:-19848 | None:intergenic |
| ATCAACTTTCGCTCTTGGAT+CGG | 0.515703 | tig0021771:+19758 | Msa1393970:three_prime_UTR |
| CACAACTTGATCCGCAGGAT+AGG | 0.519920 | tig0021771:-18485 | None:intergenic |
| TGCATAAACTGTTAATGTGA+TGG | 0.520537 | tig0021771:+19850 | Msa1393970:three_prime_UTR |
| ACAACTTGATCCGCAGGATA+GGG | 0.522782 | tig0021771:-18484 | None:intergenic |
| GATTCTAAGAAGGAAACAAC+TGG | 0.530166 | tig0021771:+19572 | Msa1393970:CDS |
| TCTGGACTCTGTAAACCCTC+TGG | 0.530652 | tig0021771:-16663 | None:intergenic |
| ACATTGAGATGATACTCTCT+TGG | 0.533961 | tig0021771:+19717 | Msa1393970:three_prime_UTR |
| ATTGAACAAAACAGCTAATG+AGG | 0.536234 | tig0021771:+18417 | Msa1393970:CDS |
| TTAGCAGCACTACCAACTCT+TGG | 0.549670 | tig0021771:-19599 | None:intergenic |
| AGTGGATGCTGATTCTAAGA+AGG | 0.550594 | tig0021771:+19562 | Msa1393970:CDS |
| TCTCTCACAACTTGATCCGC+AGG | 0.555000 | tig0021771:-18490 | None:intergenic |
| TGAGGTGACCATTGTCATAG+AGG | 0.555616 | tig0021771:+18435 | Msa1393970:CDS |
| ATGTGACTACCTTTAGGGAA+TGG | 0.573343 | tig0021771:-18777 | None:intergenic |
| CCTGTAAGCCTCTATGACAA+TGG | 0.574045 | tig0021771:-18443 | None:intergenic |
| TGCTTCTTTACAACATCTGG+AGG | 0.587901 | tig0021771:+19452 | Msa1393970:CDS |
| GTTCCTGTTATAATCTGGTG+AGG | 0.592712 | tig0021771:+19682 | Msa1393970:three_prime_UTR |
| ACAACTGGCATGCCAAGAGT+TGG | 0.596937 | tig0021771:+19587 | Msa1393970:CDS |
| GATTAAGAGTAACAGAAGAA+GGG | 0.604034 | tig0021771:-16746 | None:intergenic |
| ATTGGCTTCAACTCGTGAAG+CGG | 0.627191 | tig0021771:-19494 | None:intergenic |
| ACAGCTCTTACTAACAATCT+CGG | 0.632227 | tig0021771:-18739 | None:intergenic |
| TCTGTTGCCAAAAGTCCAGA+GGG | 0.635137 | tig0021771:+16648 | Msa1393970:CDS |
| TACAGGACTCTGAGAGATCG+TGG | 0.638700 | tig0021771:+18460 | Msa1393970:CDS |
| GTGTGGTTCAACTTTCAAAG+TGG | 0.640815 | tig0021771:+19544 | Msa1393970:CDS |
| ATCTGTTGCCAAAAGTCCAG+AGG | 0.642724 | tig0021771:+16647 | Msa1393970:CDS |
| CAAGTTGTGAGAGATTTCCA+AGG | 0.660044 | tig0021771:+18499 | Msa1393970:CDS |
| AGATCGTGGTCCCTATCCTG+CGG | 0.660971 | tig0021771:+18474 | Msa1393970:CDS |
| GATTAGCAACATTATCAATG+TGG | 0.662470 | tig0021771:-18378 | None:intergenic |
| GATAGTTCTGGTGAAATGTG+TGG | 0.684676 | tig0021771:+19527 | Msa1393970:CDS |
| GAGATTGTTAGTAAGAGCTG+TGG | 0.686661 | tig0021771:+18741 | Msa1393970:CDS |
| ACTTACAGCAGCAACAAACG+CGG | 0.705266 | tig0021771:-18560 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATAAAAAAAAAT+AGG | - | tig0021771:16855-16874 | None:intergenic | 0.0% |
| !!! | TTATGAATAATTTTATTTAG+TGG | + | tig0021771:17049-17068 | Msa1393970:intron | 10.0% |
| !!! | TTTTGTAGTTTATAATTATA+TGG | + | tig0021771:17338-17357 | Msa1393970:intron | 10.0% |
| !!! | AAAGTTTATGTTTTGATTAT+TGG | + | tig0021771:17095-17114 | Msa1393970:intron | 15.0% |
| !!! | AAGTTTATGTTTTGATTATT+GGG | + | tig0021771:17096-17115 | Msa1393970:intron | 15.0% |
| !! | TAGTTTATAATTATATGGTT+TGG | + | tig0021771:17343-17362 | Msa1393970:intron | 15.0% |
| !! | TTATTAATGATCTTAATCTA+AGG | + | tig0021771:17867-17886 | Msa1393970:intron | 15.0% |
| !! | AATAGACAAGTAAAAAATAA+GGG | - | tig0021771:19137-19156 | None:intergenic | 15.0% |
| !! | AAATAGACAAGTAAAAAATA+AGG | - | tig0021771:19138-19157 | None:intergenic | 15.0% |
| !! | AACATATATACAAACATATA+TGG | - | tig0021771:19427-19446 | None:intergenic | 15.0% |
| !! | TATTACATATCCAAAACAAA+AGG | - | tig0021771:16910-16929 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGATATGTAATA+AGG | + | tig0021771:16910-16929 | Msa1393970:intron | 20.0% |
| !!! | TTGTTTTGGATATGTAATAA+GGG | + | tig0021771:16911-16930 | Msa1393970:intron | 20.0% |
| !!! | ATTGGGTTTAATTTTGATTT+TGG | + | tig0021771:17113-17132 | Msa1393970:intron | 20.0% |
| !!! | TTGGGTTTAATTTTGATTTT+GGG | + | tig0021771:17114-17133 | Msa1393970:intron | 20.0% |
| !!! | TAATGAGTTGGATTAAAATA+TGG | + | tig0021771:17150-17169 | Msa1393970:intron | 20.0% |
| !!! | TTGTTGTATTGATTATGTTT+TGG | + | tig0021771:17247-17266 | Msa1393970:intron | 20.0% |
| !! | TATTGTTGAAATGATATTCA+TGG | + | tig0021771:17371-17390 | Msa1393970:intron | 20.0% |
| !! | AGCAGTAAAAAAAATATGAA+GGG | - | tig0021771:18007-18026 | None:intergenic | 20.0% |
| !! | AAGCAGTAAAAAAAATATGA+AGG | - | tig0021771:18008-18027 | None:intergenic | 20.0% |
| !! | TCTAATTGCTAATAAAGATT+AGG | - | tig0021771:18893-18912 | None:intergenic | 20.0% |
| !! | ATTGTTAAACTAGAAAAGTT+TGG | - | tig0021771:19023-19042 | None:intergenic | 20.0% |
| !!! | AAACTCAATGTTTTAAAAAC+TGG | - | tig0021771:19226-19245 | None:intergenic | 20.0% |
| !!! | TCAATTGTAATTTGTAACTT+TGG | - | tig0021771:19254-19273 | None:intergenic | 20.0% |
| !! | AAATCAGACATATAATTTCA+CGG | - | tig0021771:19291-19310 | None:intergenic | 20.0% |
| !! | ATATGTTTGTATATATGTTC+AGG | + | tig0021771:19428-19447 | Msa1393970:intron | 20.0% |
| !!! | CGATATTTTTGTTTAAAACT+AGG | - | tig0021771:19787-19806 | None:intergenic | 20.0% |
| ! | ATGTTTGAAAAGATCAAAGT+TGG | + | tig0021771:16882-16901 | Msa1393970:intron | 25.0% |
| ! | TCTTTGTACTATTTAGATGT+AGG | + | tig0021771:16992-17011 | Msa1393970:intron | 25.0% |
| !!! | TTTTGGAATTCATACTTGTT+GGG | + | tig0021771:17264-17283 | Msa1393970:intron | 25.0% |
| !! | AATTTTGTGTGCTATATAGT+TGG | + | tig0021771:17403-17422 | Msa1393970:intron | 25.0% |
| ! | GACAAAAAATAATCTGGAAA+AGG | - | tig0021771:17431-17450 | None:intergenic | 25.0% |
| ! | GAGTTAGACAAAAAATAATC+TGG | - | tig0021771:17437-17456 | None:intergenic | 25.0% |
| !!! | TATTGATAGTTTTTCAGAAC+AGG | + | tig0021771:17699-17718 | Msa1393970:intron | 25.0% |
| !!! | ATTTTCCTTGTTCTTTGTTT+GGG | + | tig0021771:17785-17804 | Msa1393970:intron | 25.0% |
| ! | ATCTTAAAGGAGAACTTATA+AGG | - | tig0021771:17923-17942 | None:intergenic | 25.0% |
| ! | ATACACCAAATCAATCTTAA+AGG | - | tig0021771:17936-17955 | None:intergenic | 25.0% |
| ! | GCTAATCTTAAACAACAATA+TGG | + | tig0021771:18394-18413 | Msa1393970:CDS | 25.0% |
| !! | ATACTATCGTATTTCTTTTC+AGG | + | tig0021771:18647-18666 | Msa1393970:intron | 25.0% |
| !!! | CCTTTTTATTTATGTAGAGA+AGG | - | tig0021771:18813-18832 | None:intergenic | 25.0% |
| ! | CCTTCTCTACATAAATAAAA+AGG | + | tig0021771:18810-18829 | Msa1393970:intron | 25.0% |
| ! | TTAAAAGATGTTCAACACAA+GGG | - | tig0021771:18868-18887 | None:intergenic | 25.0% |
| ! | TTGCACTTCTTACATATAAA+TGG | - | tig0021771:18996-19015 | None:intergenic | 25.0% |
| !! | TTGTAATTTGTAACTTTGGT+TGG | - | tig0021771:19250-19269 | None:intergenic | 25.0% |
| GAAAGAAAAAGCAAAGATGT+TGG | + | tig0021771:16611-16630 | Msa1393970:exon | 30.0% | |
| !!! | ATCACTCAAAGATGCTTTTT+TGG | + | tig0021771:16701-16720 | Msa1393970:CDS | 30.0% |
| GATTAAGAGTAACAGAAGAA+GGG | - | tig0021771:16749-16768 | None:intergenic | 30.0% | |
| AGATTAAGAGTAACAGAAGA+AGG | - | tig0021771:16750-16769 | None:intergenic | 30.0% | |
| ATTGATACCTTGGAAGTAAA+GGG | - | tig0021771:16815-16834 | None:intergenic | 30.0% | |
| TGAGAAATTGATTGATACCT+TGG | - | tig0021771:16825-16844 | None:intergenic | 30.0% | |
| !! | AAAGTTGGAACCTTTTGTTT+TGG | + | tig0021771:16897-16916 | Msa1393970:intron | 30.0% |
| AAATGTTCAAGGGATCAAAA+GGG | - | tig0021771:16946-16965 | None:intergenic | 30.0% | |
| !! | TTGATTTTGGGAAGATTTAG+AGG | + | tig0021771:17126-17145 | Msa1393970:intron | 30.0% |
| AGATTTAGAGGTTAATGAGT+TGG | + | tig0021771:17138-17157 | Msa1393970:intron | 30.0% | |
| !!! | GTTTTGGAATTCATACTTGT+TGG | + | tig0021771:17263-17282 | Msa1393970:intron | 30.0% |
| ! | TTTGGAATTCATACTTGTTG+GGG | + | tig0021771:17265-17284 | Msa1393970:intron | 30.0% |
| GACAAAGCTTTCTTAATAGT+AGG | - | tig0021771:17765-17784 | None:intergenic | 30.0% | |
| ! | CATTTTCCTTGTTCTTTGTT+TGG | + | tig0021771:17784-17803 | Msa1393970:intron | 30.0% |
| TATATCCCAAACAAAGAACA+AGG | - | tig0021771:17793-17812 | None:intergenic | 30.0% | |
| !! | GTTCTCCTTTAAGATTGATT+TGG | + | tig0021771:17928-17947 | Msa1393970:intron | 30.0% |
| TAAAAAAAATATGAAGGGCG+TGG | - | tig0021771:18002-18021 | None:intergenic | 30.0% | |
| !! | CAGCTATAAGTTGTTTTCAT+CGG | - | tig0021771:18148-18167 | None:intergenic | 30.0% |
| GATTAGCAACATTATCAATG+TGG | - | tig0021771:18381-18400 | None:intergenic | 30.0% | |
| ATTGAACAAAACAGCTAATG+AGG | + | tig0021771:18417-18436 | Msa1393970:CDS | 30.0% | |
| AGATAAATGCAAATTTGCCT+TGG | - | tig0021771:18519-18538 | None:intergenic | 30.0% | |
| AATTATCGGAGAATATGACA+TGG | - | tig0021771:18610-18629 | None:intergenic | 30.0% | |
| AAGAAATACGATAGTATGCA+AGG | - | tig0021771:18644-18663 | None:intergenic | 30.0% | |
| !! | ATTTCTTTTCAGGATGTTGA+TGG | + | tig0021771:18657-18676 | Msa1393970:intron | 30.0% |
| !! | TTTCTTTTCAGGATGTTGAT+GGG | + | tig0021771:18658-18677 | Msa1393970:intron | 30.0% |
| AAATCATGTGACTACCTTTA+GGG | - | tig0021771:18785-18804 | None:intergenic | 30.0% | |
| TAAATCATGTGACTACCTTT+AGG | - | tig0021771:18786-18805 | None:intergenic | 30.0% | |
| CTTAAAAGATGTTCAACACA+AGG | - | tig0021771:18869-18888 | None:intergenic | 30.0% | |
| TACCAGAATGATGTAAGATT+AGG | + | tig0021771:18923-18942 | Msa1393970:intron | 30.0% | |
| ACCAGAATGATGTAAGATTA+GGG | + | tig0021771:18924-18943 | Msa1393970:intron | 30.0% | |
| ATTAGGGATAACAAGTTTGA+TGG | + | tig0021771:18940-18959 | Msa1393970:intron | 30.0% | |
| ATGGCTAGAAATGGTAAATA+TGG | + | tig0021771:18959-18978 | Msa1393970:intron | 30.0% | |
| AAATTGGCCAATTCTCAATT+CGG | - | tig0021771:19061-19080 | None:intergenic | 30.0% | |
| ! | TTTTTCATCAGTTCAATCGT+CGG | + | tig0021771:19155-19174 | Msa1393970:intron | 30.0% |
| !!! | TTTTCAGGTAATGGTTCATT+CGG | - | tig0021771:19186-19205 | None:intergenic | 30.0% |
| TTGTAAAGACGTGTACAATA+TGG | - | tig0021771:19367-19386 | None:intergenic | 30.0% | |
| GAACTATCAATTCTTGGTAT+TGG | - | tig0021771:19515-19534 | None:intergenic | 30.0% | |
| ! | ATACCAAGAATTGATAGTTC+TGG | + | tig0021771:19515-19534 | Msa1393970:CDS | 30.0% |
| CATTTGTTCCTGTTATAATC+TGG | + | tig0021771:19677-19696 | Msa1393970:three_prime_UTR | 30.0% | |
| ATAATATCAACTTTCGCTCT+TGG | + | tig0021771:19753-19772 | Msa1393970:three_prime_UTR | 30.0% | |
| ATCACATTAACAGTTTATGC+AGG | - | tig0021771:19851-19870 | None:intergenic | 30.0% | |
| TGCATAAACTGTTAATGTGA+TGG | + | tig0021771:19850-19869 | Msa1393970:three_prime_UTR | 30.0% | |
| GATGAAACTGAGTTTGATTC+TGG | - | tig0021771:16684-16703 | None:intergenic | 35.0% | |
| AAAACAACCCTTTACTTCCA+AGG | + | tig0021771:16805-16824 | Msa1393970:CDS | 35.0% | |
| GATTGATACCTTGGAAGTAA+AGG | - | tig0021771:16816-16835 | None:intergenic | 35.0% | |
| CAAATGTTCAAGGGATCAAA+AGG | - | tig0021771:16947-16966 | None:intergenic | 35.0% | |
| ! | CTTTTGATCCCTTGAACATT+TGG | + | tig0021771:16945-16964 | Msa1393970:intron | 35.0% |
| ACCATTCACCAAATGTTCAA+GGG | - | tig0021771:16956-16975 | None:intergenic | 35.0% | |
| TGTAGGATGATGATCATAGT+TGG | + | tig0021771:17009-17028 | Msa1393970:intron | 35.0% | |
| GATGATCATAGTTGGAATGT+TGG | + | tig0021771:17017-17036 | Msa1393970:intron | 35.0% | |
| GAAATGATATTCATGGTGAG+TGG | + | tig0021771:17378-17397 | Msa1393970:intron | 35.0% | |
| CATCTTTGTCTAAACCTATG+AGG | + | tig0021771:17460-17479 | Msa1393970:intron | 35.0% | |
| CTTATTTCCATAAACTCTCG+AGG | + | tig0021771:18118-18137 | Msa1393970:intron | 35.0% | |
| ACTGAGCTGTTTATCTAAAC+AGG | + | tig0021771:18265-18284 | Msa1393970:intron | 35.0% | |
| CTGAGCTGTTTATCTAAACA+GGG | + | tig0021771:18266-18285 | Msa1393970:intron | 35.0% | |
| GGAAGACAAAGATATATCCT+AGG | - | tig0021771:18589-18608 | None:intergenic | 35.0% | |
| AGGTCTGAGCAGAAAATTAT+CGG | - | tig0021771:18624-18643 | None:intergenic | 35.0% | |
| ACAGCTCTTACTAACAATCT+CGG | - | tig0021771:18742-18761 | None:intergenic | 35.0% | |
| TCCCTAATCTTACATCATTC+TGG | - | tig0021771:18928-18947 | None:intergenic | 35.0% | |
| ! | ACAAGTTTGATGGCTAGAAA+TGG | + | tig0021771:18950-18969 | Msa1393970:intron | 35.0% |
| AACTGAACCGAATTGAGAAT+TGG | + | tig0021771:19051-19070 | Msa1393970:intron | 35.0% | |
| ACAACAGAGATCAAACTAAC+CGG | - | tig0021771:19085-19104 | None:intergenic | 35.0% | |
| TTAAAAACTGGAGATCGAAG+AGG | - | tig0021771:19214-19233 | None:intergenic | 35.0% | |
| TATGGAAGAAACATTGATCG+TGG | - | tig0021771:19349-19368 | None:intergenic | 35.0% | |
| TCACCAGAACTATCAATTCT+TGG | - | tig0021771:19521-19540 | None:intergenic | 35.0% | |
| ! | GATTCTAAGAAGGAAACAAC+TGG | + | tig0021771:19572-19591 | Msa1393970:CDS | 35.0% |
| ACATTGAGATGATACTCTCT+TGG | + | tig0021771:19717-19736 | Msa1393970:three_prime_UTR | 35.0% | |
| !! | CTGTTAATGTGATGGATACT+TGG | + | tig0021771:19858-19877 | Msa1393970:three_prime_UTR | 35.0% |
| ! | TCCCTTGAACATTTGGTGAA+TGG | + | tig0021771:16952-16971 | Msa1393970:intron | 40.0% |
| CACCATTCACCAAATGTTCA+AGG | - | tig0021771:16957-16976 | None:intergenic | 40.0% | |
| TCTATGTAGTCGACATCACT+TGG | + | tig0021771:17203-17222 | Msa1393970:intron | 40.0% | |
| TGTCAATGTGATCACCTCAT+AGG | - | tig0021771:17477-17496 | None:intergenic | 40.0% | |
| TGTCTGACACCAACATAAGT+TGG | + | tig0021771:17574-17593 | Msa1393970:intron | 40.0% | |
| ! | TTTTCTTTTCCCATGTTCGC+AGG | + | tig0021771:18314-18333 | Msa1393970:intron | 40.0% |
| GACATCTTCTGCTTGTTTCA+CGG | + | tig0021771:18355-18374 | Msa1393970:CDS | 40.0% | |
| CAAGTTGTGAGAGATTTCCA+AGG | + | tig0021771:18499-18518 | Msa1393970:CDS | 40.0% | |
| TTGCTGCTGTAAGTAATCCT+AGG | + | tig0021771:18569-18588 | Msa1393970:intron | 40.0% | |
| GCATCAATTCCCCAGAAAAA+GGG | - | tig0021771:18690-18709 | None:intergenic | 40.0% | |
| AGCATCAATTCCCCAGAAAA+AGG | - | tig0021771:18691-18710 | None:intergenic | 40.0% | |
| GAGATTGTTAGTAAGAGCTG+TGG | + | tig0021771:18741-18760 | Msa1393970:CDS | 40.0% | |
| ! | TCTTTTGCACCATTCCCTAA+AGG | + | tig0021771:18768-18787 | Msa1393970:CDS | 40.0% |
| ! | ATGTGACTACCTTTAGGGAA+TGG | - | tig0021771:18780-18799 | None:intergenic | 40.0% |
| GATGTTCAACACAAGGGATT+AGG | - | tig0021771:18862-18881 | None:intergenic | 40.0% | |
| TTGAGAATTGGCCAATTTGC+CGG | + | tig0021771:19063-19082 | Msa1393970:intron | 40.0% | |
| GATCAAACTAACCGGCAAAT+TGG | - | tig0021771:19077-19096 | None:intergenic | 40.0% | |
| GACAATCGATAGTTCGATAC+AGG | - | tig0021771:19327-19346 | None:intergenic | 40.0% | |
| GGATGCTTCTTTACAACATC+TGG | + | tig0021771:19449-19468 | Msa1393970:intron | 40.0% | |
| TGCTTCTTTACAACATCTGG+AGG | + | tig0021771:19452-19471 | Msa1393970:CDS | 40.0% | |
| TTACAACATCTGGAGGTTTG+AGG | + | tig0021771:19459-19478 | Msa1393970:CDS | 40.0% | |
| !! | GATAGTTCTGGTGAAATGTG+TGG | + | tig0021771:19527-19546 | Msa1393970:CDS | 40.0% |
| GTGTGGTTCAACTTTCAAAG+TGG | + | tig0021771:19544-19563 | Msa1393970:CDS | 40.0% | |
| !! | AGTGGATGCTGATTCTAAGA+AGG | + | tig0021771:19562-19581 | Msa1393970:CDS | 40.0% |
| GTTCCTGTTATAATCTGGTG+AGG | + | tig0021771:19682-19701 | Msa1393970:three_prime_UTR | 40.0% | |
| TAGCCTCACCAGATTATAAC+AGG | - | tig0021771:19688-19707 | None:intergenic | 40.0% | |
| ATCAACTTTCGCTCTTGGAT+CGG | + | tig0021771:19758-19777 | Msa1393970:three_prime_UTR | 40.0% | |
| ATCTGTTGCCAAAAGTCCAG+AGG | + | tig0021771:16647-16666 | Msa1393970:CDS | 45.0% | |
| TCTGTTGCCAAAAGTCCAGA+GGG | + | tig0021771:16648-16667 | Msa1393970:CDS | 45.0% | |
| ! | CTGTAAACCCTCTGGACTTT+TGG | - | tig0021771:16658-16677 | None:intergenic | 45.0% |
| TGTAGTCGACATCACTTGGT+TGG | + | tig0021771:17207-17226 | Msa1393970:intron | 45.0% | |
| CGACATCACTTGGTTGGATA+AGG | + | tig0021771:17213-17232 | Msa1393970:intron | 45.0% | |
| TCACTTGGTTGGATAAGGCT+TGG | + | tig0021771:17218-17237 | Msa1393970:intron | 45.0% | |
| GTCTCGTGTCCAACTTATGT+TGG | - | tig0021771:17586-17605 | None:intergenic | 45.0% | |
| AGACTGTTCGAGAGAGGTTA+TGG | + | tig0021771:18060-18079 | Msa1393970:intron | 45.0% | |
| TGAGGTGACCATTGTCATAG+AGG | + | tig0021771:18435-18454 | Msa1393970:CDS | 45.0% | |
| CCTGTAAGCCTCTATGACAA+TGG | - | tig0021771:18446-18465 | None:intergenic | 45.0% | |
| CCATTGTCATAGAGGCTTAC+AGG | + | tig0021771:18443-18462 | Msa1393970:CDS | 45.0% | |
| ACAACTTGATCCGCAGGATA+GGG | - | tig0021771:18487-18506 | None:intergenic | 45.0% | |
| ACTTACAGCAGCAACAAACG+CGG | - | tig0021771:18563-18582 | None:intergenic | 45.0% | |
| !!! | ATGGGAGTGTTCCCTTTTTC+TGG | + | tig0021771:18676-18695 | Msa1393970:CDS | 45.0% |
| !!! | TGGGAGTGTTCCCTTTTTCT+GGG | + | tig0021771:18677-18696 | Msa1393970:CDS | 45.0% |
| !!! | GAGGTGAGGTTTTCAGGTAA+TGG | - | tig0021771:19195-19214 | None:intergenic | 45.0% |
| ! | ATCGAAGAGGTGAGGTTTTC+AGG | - | tig0021771:19201-19220 | None:intergenic | 45.0% |
| GATAGTTCGATACAGGCACA+AGG | - | tig0021771:19320-19339 | None:intergenic | 45.0% | |
| ! | ATTGGCTTCAACTCGTGAAG+CGG | - | tig0021771:19497-19516 | None:intergenic | 45.0% |
| TTAGCAGCACTACCAACTCT+TGG | - | tig0021771:19602-19621 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTATTTTTTTTATC+TGG | + | tig0021771:16857-16876 | Msa1393970:intron | 5.0% |
| !!! | TTTTTTTATTTTTTTTATCT+GGG | + | tig0021771:16858-16877 | Msa1393970:intron | 5.0% |
| TCTGGACTCTGTAAACCCTC+TGG | - | tig0021771:16666-16685 | None:intergenic | 50.0% | |
| CATGTGAGACTGTTCGAGAG+AGG | + | tig0021771:18054-18073 | Msa1393970:intron | 50.0% | |
| CGGCTATCCTCGAGAGTTTA+TGG | - | tig0021771:18128-18147 | None:intergenic | 50.0% | |
| ! | TACAGGACTCTGAGAGATCG+TGG | + | tig0021771:18460-18479 | Msa1393970:CDS | 50.0% |
| CACAACTTGATCCGCAGGAT+AGG | - | tig0021771:18488-18507 | None:intergenic | 50.0% | |
| TCTCTCACAACTTGATCCGC+AGG | - | tig0021771:18493-18512 | None:intergenic | 50.0% | |
| !!! | GGGAGTGTTCCCTTTTTCTG+GGG | + | tig0021771:18678-18697 | Msa1393970:CDS | 50.0% |
| ATCTCTGTTGTACCGCAGTC+TGG | + | tig0021771:19094-19113 | Msa1393970:intron | 50.0% | |
| AACTGGAGATCGAAGAGGTG+AGG | - | tig0021771:19209-19228 | None:intergenic | 50.0% | |
| ACAACTGGCATGCCAAGAGT+TGG | + | tig0021771:19587-19606 | Msa1393970:CDS | 50.0% | |
| !! | GAGTTGGTAGTGCTGCTAAC+TGG | + | tig0021771:19603-19622 | Msa1393970:CDS | 50.0% |
| CGCAAACAGCCTGCGAACAT+GGG | - | tig0021771:18326-18345 | None:intergenic | 55.0% | |
| CCATGTTCGCAGGCTGTTTG+CGG | + | tig0021771:18324-18343 | Msa1393970:intron | 55.0% | |
| AGATCGTGGTCCCTATCCTG+CGG | + | tig0021771:18474-18493 | Msa1393970:CDS | 55.0% | |
| CCGCAAACAGCCTGCGAACA+TGG | - | tig0021771:18327-18346 | None:intergenic | 60.0% | |
| TCGCAGGCTGTTTGCGGTTG+TGG | + | tig0021771:18330-18349 | Msa1393970:intron | 60.0% | |
| ACCGCAGTCTGGTTGTGCTG+CGG | + | tig0021771:19105-19124 | Msa1393970:intron | 60.0% | |
| ACCGCAGCACAACCAGACTG+CGG | - | tig0021771:19109-19128 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021771 | gene | 16523 | 19892 | 16523 | ID=Msa1393970;Name=Msa1393970 |
| tig0021771 | mRNA | 16523 | 19892 | 16523 | ID=Msa1393970-mRNA-1;Parent=Msa1393970;Name=Msa1393970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=104|1|1|1|1|1|4|252|250 |
| tig0021771 | exon | 16523 | 16826 | 16523 | ID=Msa1393970-mRNA-1:exon:14146;Parent=Msa1393970-mRNA-1 |
| tig0021771 | exon | 18336 | 18576 | 18336 | ID=Msa1393970-mRNA-1:exon:14147;Parent=Msa1393970-mRNA-1 |
| tig0021771 | exon | 18669 | 18789 | 18669 | ID=Msa1393970-mRNA-1:exon:14148;Parent=Msa1393970-mRNA-1 |
| tig0021771 | exon | 19450 | 19892 | 19450 | ID=Msa1393970-mRNA-1:exon:14149;Parent=Msa1393970-mRNA-1 |
| tig0021771 | five_prime_UTR | 16523 | 16626 | 16523 | ID=Msa1393970-mRNA-1:five_prime_utr;Parent=Msa1393970-mRNA-1 |
| tig0021771 | CDS | 16627 | 16826 | 16627 | ID=Msa1393970-mRNA-1:cds;Parent=Msa1393970-mRNA-1 |
| tig0021771 | CDS | 18336 | 18576 | 18336 | ID=Msa1393970-mRNA-1:cds;Parent=Msa1393970-mRNA-1 |
| tig0021771 | CDS | 18669 | 18789 | 18669 | ID=Msa1393970-mRNA-1:cds;Parent=Msa1393970-mRNA-1 |
| tig0021771 | CDS | 19450 | 19640 | 19450 | ID=Msa1393970-mRNA-1:cds;Parent=Msa1393970-mRNA-1 |
| tig0021771 | three_prime_UTR | 19641 | 19892 | 19641 | ID=Msa1393970-mRNA-1:three_prime_utr;Parent=Msa1393970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
