Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064520 | sp|P24805|TSJT1_TOBAC | 41.892 | 148 | 84 | 1 | 1 | 146 | 1 | 148 | 7.80e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064520 | A0A072VSE8 | 96.400 | 250 | 9 | 0 | 1 | 250 | 1 | 250 | 8.42e-180 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064520 | Msa0109460 | 0.850174 | 2.014050e-60 | -8.615850e-47 |
| Msa0064520 | Msa1393970 | 0.949051 | 2.775334e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064520 | MtrunA17_Chr1g0166351 | 96.400 | 250 | 9 | 0 | 1 | 250 | 1 | 250 | 0.0 | 503 |
| Msa0064520 | MtrunA17_Chr1g0204611 | 81.928 | 249 | 45 | 0 | 1 | 249 | 1 | 249 | 1.46e-156 | 434 |
| Msa0064520 | MtrunA17_Chr2g0281901 | 46.400 | 250 | 130 | 3 | 1 | 248 | 1 | 248 | 6.53e-82 | 246 |
| Msa0064520 | MtrunA17_Chr4g0047531 | 46.586 | 249 | 127 | 4 | 1 | 245 | 64 | 310 | 3.25e-75 | 231 |
| Msa0064520 | MtrunA17_Chr2g0317901 | 47.809 | 251 | 122 | 4 | 1 | 246 | 1 | 247 | 2.62e-74 | 226 |
| Msa0064520 | MtrunA17_Chr2g0287871 | 46.957 | 230 | 118 | 3 | 1 | 228 | 1 | 228 | 9.88e-73 | 222 |
| Msa0064520 | MtrunA17_Chr4g0065571 | 45.022 | 231 | 122 | 3 | 1 | 228 | 1 | 229 | 7.08e-67 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064520 | AT3G22850.1 | 69.880 | 249 | 73 | 1 | 1 | 249 | 1 | 247 | 4.38e-133 | 375 |
| Msa0064520 | AT5G43830.1 | 69.600 | 250 | 75 | 1 | 1 | 249 | 1 | 250 | 1.48e-130 | 369 |
| Msa0064520 | AT4G27450.1 | 46.304 | 257 | 120 | 4 | 1 | 247 | 1 | 249 | 8.16e-81 | 243 |
| Msa0064520 | AT3G15450.1 | 46.215 | 251 | 128 | 4 | 1 | 247 | 1 | 248 | 7.27e-79 | 238 |
| Msa0064520 | AT5G19140.1 | 47.826 | 230 | 116 | 3 | 1 | 228 | 1 | 228 | 1.35e-74 | 227 |
| Msa0064520 | AT5G19140.2 | 45.217 | 230 | 110 | 4 | 1 | 228 | 1 | 216 | 9.87e-66 | 204 |
| Msa0064520 | AT5G19140.3 | 52.326 | 172 | 79 | 2 | 58 | 228 | 23 | 192 | 7.90e-62 | 193 |
| Msa0064520 | AT3G15450.2 | 44.271 | 192 | 102 | 3 | 1 | 188 | 1 | 191 | 8.40e-54 | 173 |
| Msa0064520 | AT3G15450.3 | 42.771 | 166 | 90 | 3 | 1 | 162 | 1 | 165 | 3.17e-41 | 140 |
Find 55 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTAAACCCTCTGGACTTT+TGG | 0.233411 | 1_2:+25731781 | None:intergenic |
| AGCATCAATTCCCCAGAAAA+AGG | 0.236259 | 1_2:+25729750 | None:intergenic |
| GATGAAACTGAGTTTGATTC+TGG | 0.248097 | 1_2:+25731755 | None:intergenic |
| AAATCATGTGACTACCTTTA+GGG | 0.291576 | 1_2:+25729656 | None:intergenic |
| TCACCAGAACTATCAATTCT+TGG | 0.292250 | 1_2:+25728920 | None:intergenic |
| CCATTGTCATAGAGGCTTAC+AGG | 0.301949 | 1_2:-25729995 | Msa0064520:CDS |
| GCTAATCTTAAACAACAATA+TGG | 0.304844 | 1_2:-25730044 | Msa0064520:CDS |
| GAACTATCAATTCTTGGTAT+TGG | 0.316938 | 1_2:+25728926 | None:intergenic |
| GGATGCTTCTTTACAACATC+TGG | 0.326286 | 1_2:-25728989 | Msa0064520:CDS |
| CATTTGTTCCTGTTATAATC+TGG | 0.333403 | 1_2:-25728761 | Msa0064520:three_prime_UTR |
| ATAATATCAACTTTCGCTCT+TGG | 0.352977 | 1_2:-25728685 | Msa0064520:three_prime_UTR |
| TAGCCTCACCAGATTATAAC+AGG | 0.384940 | 1_2:+25728753 | None:intergenic |
| TCGCAGGCTGTTTGCGGTTG+TGG | 0.387192 | 1_2:-25730108 | Msa0064520:intron |
| ATTGATACCTTGGAAGTAAA+GGG | 0.399756 | 1_2:+25731624 | None:intergenic |
| CCATGTTCGCAGGCTGTTTG+CGG | 0.401263 | 1_2:-25730114 | Msa0064520:intron |
| ATACCAAGAATTGATAGTTC+TGG | 0.413580 | 1_2:-25728923 | Msa0064520:CDS |
| GACATCTTCTGCTTGTTTCA+CGG | 0.416703 | 1_2:-25730083 | Msa0064520:CDS |
| GAGTTGGTAGTGCTGCTAAC+TGG | 0.444345 | 1_2:-25728835 | Msa0064520:CDS |
| TTACAACATCTGGAGGTTTG+AGG | 0.452208 | 1_2:-25728979 | Msa0064520:CDS |
| AGATAAATGCAAATTTGCCT+TGG | 0.457772 | 1_2:+25729922 | None:intergenic |
| AGATTAAGAGTAACAGAAGA+AGG | 0.477662 | 1_2:+25731689 | None:intergenic |
| GATTGATACCTTGGAAGTAA+AGG | 0.479097 | 1_2:+25731623 | None:intergenic |
| CTGTTAATGTGATGGATACT+TGG | 0.491330 | 1_2:-25728580 | Msa0064520:three_prime_UTR |
| AAAACAACCCTTTACTTCCA+AGG | 0.510463 | 1_2:-25731631 | Msa0064520:intron |
| ATCACATTAACAGTTTATGC+AGG | 0.510474 | 1_2:+25728590 | None:intergenic |
| ATCAACTTTCGCTCTTGGAT+CGG | 0.515703 | 1_2:-25728680 | Msa0064520:three_prime_UTR |
| CACAACTTGATCCGCAGGAT+AGG | 0.519920 | 1_2:+25729953 | None:intergenic |
| TGCATAAACTGTTAATGTGA+TGG | 0.520537 | 1_2:-25728588 | Msa0064520:three_prime_UTR |
| ACAACTTGATCCGCAGGATA+GGG | 0.522782 | 1_2:+25729954 | None:intergenic |
| GATTCTAAGAAGGAAACAAC+TGG | 0.530166 | 1_2:-25728866 | Msa0064520:CDS |
| TCTGGACTCTGTAAACCCTC+TGG | 0.530652 | 1_2:+25731773 | None:intergenic |
| ACATTGAGATGATACTCTCT+TGG | 0.533961 | 1_2:-25728721 | Msa0064520:three_prime_UTR |
| ATTGAACAAAACAGCTAATG+AGG | 0.536234 | 1_2:-25730021 | Msa0064520:CDS |
| TTAGCAGCACTACCAACTCT+TGG | 0.549670 | 1_2:+25728839 | None:intergenic |
| AGTGGATGCTGATTCTAAGA+AGG | 0.550594 | 1_2:-25728876 | Msa0064520:CDS |
| TCTCTCACAACTTGATCCGC+AGG | 0.555000 | 1_2:+25729948 | None:intergenic |
| TGAGGTGACCATTGTCATAG+AGG | 0.555616 | 1_2:-25730003 | Msa0064520:CDS |
| ATGTGACTACCTTTAGGGAA+TGG | 0.573343 | 1_2:+25729661 | None:intergenic |
| CCTGTAAGCCTCTATGACAA+TGG | 0.574045 | 1_2:+25729995 | None:intergenic |
| TGCTTCTTTACAACATCTGG+AGG | 0.587901 | 1_2:-25728986 | Msa0064520:CDS |
| GTTCCTGTTATAATCTGGTG+AGG | 0.592712 | 1_2:-25728756 | Msa0064520:three_prime_UTR |
| ACAACTGGCATGCCAAGAGT+TGG | 0.596937 | 1_2:-25728851 | Msa0064520:CDS |
| GATTAAGAGTAACAGAAGAA+GGG | 0.604034 | 1_2:+25731690 | None:intergenic |
| ATTGGCTTCAACTCGTGAAG+CGG | 0.627191 | 1_2:+25728944 | None:intergenic |
| ACAGCTCTTACTAACAATCT+CGG | 0.632227 | 1_2:+25729699 | None:intergenic |
| TCTGTTGCCAAAAGTCCAGA+GGG | 0.635137 | 1_2:-25731788 | Msa0064520:CDS |
| TACAGGACTCTGAGAGATCG+TGG | 0.638700 | 1_2:-25729978 | Msa0064520:CDS |
| GTGTGGTTCAACTTTCAAAG+TGG | 0.640815 | 1_2:-25728894 | Msa0064520:CDS |
| ATCTGTTGCCAAAAGTCCAG+AGG | 0.642724 | 1_2:-25731789 | Msa0064520:CDS |
| CAAGTTGTGAGAGATTTCCA+AGG | 0.660044 | 1_2:-25729939 | Msa0064520:CDS |
| AGATCGTGGTCCCTATCCTG+CGG | 0.660971 | 1_2:-25729964 | Msa0064520:CDS |
| GATTAGCAACATTATCAATG+TGG | 0.662470 | 1_2:+25730060 | None:intergenic |
| GATAGTTCTGGTGAAATGTG+TGG | 0.684676 | 1_2:-25728911 | Msa0064520:CDS |
| GAGATTGTTAGTAAGAGCTG+TGG | 0.686661 | 1_2:-25729697 | Msa0064520:CDS |
| ACTTACAGCAGCAACAAACG+CGG | 0.705266 | 1_2:+25729878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATAAAAAAAAAT+AGG | + | chr1_2:25728900-25728919 | None:intergenic | 0.0% |
| !!! | TTATGAATAATTTTATTTAG+TGG | - | chr1_2:25729094-25729113 | Msa0064520:intron | 10.0% |
| !!! | TTTTGTAGTTTATAATTATA+TGG | - | chr1_2:25729381-25729400 | Msa0064520:intron | 10.0% |
| !!! | AAAGTTTATGTTTTGATTAT+TGG | - | chr1_2:25729140-25729159 | Msa0064520:intron | 15.0% |
| !!! | AAGTTTATGTTTTGATTATT+GGG | - | chr1_2:25729141-25729160 | Msa0064520:intron | 15.0% |
| !! | TAGTTTATAATTATATGGTT+TGG | - | chr1_2:25729386-25729405 | Msa0064520:intron | 15.0% |
| !! | TTATTAATGATCTTAATCTA+AGG | - | chr1_2:25729910-25729929 | Msa0064520:CDS | 15.0% |
| !! | AATAGACAAGTAAAAAATAA+GGG | + | chr1_2:25731180-25731199 | None:intergenic | 15.0% |
| !! | AAATAGACAAGTAAAAAATA+AGG | + | chr1_2:25731181-25731200 | None:intergenic | 15.0% |
| !! | AACATATATACAAACATATA+TGG | + | chr1_2:25731470-25731489 | None:intergenic | 15.0% |
| !! | TATTACATATCCAAAACAAA+AGG | + | chr1_2:25728955-25728974 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGATATGTAATA+AGG | - | chr1_2:25728955-25728974 | Msa0064520:CDS | 20.0% |
| !!! | TTGTTTTGGATATGTAATAA+GGG | - | chr1_2:25728956-25728975 | Msa0064520:CDS | 20.0% |
| !!! | ATTGGGTTTAATTTTGATTT+TGG | - | chr1_2:25729158-25729177 | Msa0064520:intron | 20.0% |
| !!! | TTGGGTTTAATTTTGATTTT+GGG | - | chr1_2:25729159-25729178 | Msa0064520:intron | 20.0% |
| !!! | TAATGAGTTGGATTAAAATA+TGG | - | chr1_2:25729195-25729214 | Msa0064520:intron | 20.0% |
| !!! | TTGTTGTATTGATTATGTTT+TGG | - | chr1_2:25729292-25729311 | Msa0064520:intron | 20.0% |
| !! | TATTGTTGAAATGATATTCA+TGG | - | chr1_2:25729414-25729433 | Msa0064520:intron | 20.0% |
| !! | AGCAGTAAAAAAAATATGAA+GGG | + | chr1_2:25730050-25730069 | None:intergenic | 20.0% |
| !! | AAGCAGTAAAAAAAATATGA+AGG | + | chr1_2:25730051-25730070 | None:intergenic | 20.0% |
| !! | TCTAATTGCTAATAAAGATT+AGG | + | chr1_2:25730936-25730955 | None:intergenic | 20.0% |
| !! | ATTGTTAAACTAGAAAAGTT+TGG | + | chr1_2:25731066-25731085 | None:intergenic | 20.0% |
| !!! | AAACTCAATGTTTTAAAAAC+TGG | + | chr1_2:25731269-25731288 | None:intergenic | 20.0% |
| !!! | TCAATTGTAATTTGTAACTT+TGG | + | chr1_2:25731297-25731316 | None:intergenic | 20.0% |
| !! | AAATCAGACATATAATTTCA+CGG | + | chr1_2:25731334-25731353 | None:intergenic | 20.0% |
| !! | ATATGTTTGTATATATGTTC+AGG | - | chr1_2:25731471-25731490 | Msa0064520:intron | 20.0% |
| !!! | CGATATTTTTGTTTAAAACT+AGG | + | chr1_2:25731830-25731849 | None:intergenic | 20.0% |
| ! | ATGTTTGAAAAGATCAAAGT+TGG | - | chr1_2:25728927-25728946 | Msa0064520:CDS | 25.0% |
| ! | TCTTTGTACTATTTAGATGT+AGG | - | chr1_2:25729037-25729056 | Msa0064520:intron | 25.0% |
| !!! | TTTTGGAATTCATACTTGTT+GGG | - | chr1_2:25729309-25729328 | Msa0064520:intron | 25.0% |
| !! | AATTTTGTGTGCTATATAGT+TGG | - | chr1_2:25729446-25729465 | Msa0064520:intron | 25.0% |
| ! | GACAAAAAATAATCTGGAAA+AGG | + | chr1_2:25729474-25729493 | None:intergenic | 25.0% |
| ! | GAGTTAGACAAAAAATAATC+TGG | + | chr1_2:25729480-25729499 | None:intergenic | 25.0% |
| !!! | TATTGATAGTTTTTCAGAAC+AGG | - | chr1_2:25729742-25729761 | Msa0064520:CDS | 25.0% |
| !!! | ATTTTCCTTGTTCTTTGTTT+GGG | - | chr1_2:25729828-25729847 | Msa0064520:intron | 25.0% |
| ! | ATCTTAAAGGAGAACTTATA+AGG | + | chr1_2:25729966-25729985 | None:intergenic | 25.0% |
| ! | ATACACCAAATCAATCTTAA+AGG | + | chr1_2:25729979-25729998 | None:intergenic | 25.0% |
| ! | GCTAATCTTAAACAACAATA+TGG | - | chr1_2:25730437-25730456 | Msa0064520:intron | 25.0% |
| !! | ATACTATCGTATTTCTTTTC+AGG | - | chr1_2:25730690-25730709 | Msa0064520:intron | 25.0% |
| !!! | CCTTTTTATTTATGTAGAGA+AGG | + | chr1_2:25730856-25730875 | None:intergenic | 25.0% |
| ! | CCTTCTCTACATAAATAAAA+AGG | - | chr1_2:25730853-25730872 | Msa0064520:intron | 25.0% |
| ! | TTAAAAGATGTTCAACACAA+GGG | + | chr1_2:25730911-25730930 | None:intergenic | 25.0% |
| ! | TTGCACTTCTTACATATAAA+TGG | + | chr1_2:25731039-25731058 | None:intergenic | 25.0% |
| !! | TTGTAATTTGTAACTTTGGT+TGG | + | chr1_2:25731293-25731312 | None:intergenic | 25.0% |
| GAAAGAAAAAGCAAAGATGT+TGG | - | chr1_2:25728656-25728675 | Msa0064520:three_prime_UTR | 30.0% | |
| !!! | ATCACTCAAAGATGCTTTTT+TGG | - | chr1_2:25728746-25728765 | Msa0064520:three_prime_UTR | 30.0% |
| GATTAAGAGTAACAGAAGAA+GGG | + | chr1_2:25728794-25728813 | None:intergenic | 30.0% | |
| AGATTAAGAGTAACAGAAGA+AGG | + | chr1_2:25728795-25728814 | None:intergenic | 30.0% | |
| ATTGATACCTTGGAAGTAAA+GGG | + | chr1_2:25728860-25728879 | None:intergenic | 30.0% | |
| TGAGAAATTGATTGATACCT+TGG | + | chr1_2:25728870-25728889 | None:intergenic | 30.0% | |
| !! | AAAGTTGGAACCTTTTGTTT+TGG | - | chr1_2:25728942-25728961 | Msa0064520:CDS | 30.0% |
| AAATGTTCAAGGGATCAAAA+GGG | + | chr1_2:25728991-25729010 | None:intergenic | 30.0% | |
| !! | TTGATTTTGGGAAGATTTAG+AGG | - | chr1_2:25729171-25729190 | Msa0064520:intron | 30.0% |
| AGATTTAGAGGTTAATGAGT+TGG | - | chr1_2:25729183-25729202 | Msa0064520:intron | 30.0% | |
| !!! | GTTTTGGAATTCATACTTGT+TGG | - | chr1_2:25729308-25729327 | Msa0064520:intron | 30.0% |
| ! | TTTGGAATTCATACTTGTTG+GGG | - | chr1_2:25729310-25729329 | Msa0064520:intron | 30.0% |
| GACAAAGCTTTCTTAATAGT+AGG | + | chr1_2:25729808-25729827 | None:intergenic | 30.0% | |
| ! | CATTTTCCTTGTTCTTTGTT+TGG | - | chr1_2:25729827-25729846 | Msa0064520:intron | 30.0% |
| TATATCCCAAACAAAGAACA+AGG | + | chr1_2:25729836-25729855 | None:intergenic | 30.0% | |
| !! | GTTCTCCTTTAAGATTGATT+TGG | - | chr1_2:25729971-25729990 | Msa0064520:CDS | 30.0% |
| TAAAAAAAATATGAAGGGCG+TGG | + | chr1_2:25730045-25730064 | None:intergenic | 30.0% | |
| !! | CAGCTATAAGTTGTTTTCAT+CGG | + | chr1_2:25730191-25730210 | None:intergenic | 30.0% |
| GATTAGCAACATTATCAATG+TGG | + | chr1_2:25730424-25730443 | None:intergenic | 30.0% | |
| ATTGAACAAAACAGCTAATG+AGG | - | chr1_2:25730460-25730479 | Msa0064520:intron | 30.0% | |
| AGATAAATGCAAATTTGCCT+TGG | + | chr1_2:25730562-25730581 | None:intergenic | 30.0% | |
| AATTATCGGAGAATATGACA+TGG | + | chr1_2:25730653-25730672 | None:intergenic | 30.0% | |
| AAGAAATACGATAGTATGCA+AGG | + | chr1_2:25730687-25730706 | None:intergenic | 30.0% | |
| !! | ATTTCTTTTCAGGATGTTGA+TGG | - | chr1_2:25730700-25730719 | Msa0064520:intron | 30.0% |
| !! | TTTCTTTTCAGGATGTTGAT+GGG | - | chr1_2:25730701-25730720 | Msa0064520:intron | 30.0% |
| AAATCATGTGACTACCTTTA+GGG | + | chr1_2:25730828-25730847 | None:intergenic | 30.0% | |
| TAAATCATGTGACTACCTTT+AGG | + | chr1_2:25730829-25730848 | None:intergenic | 30.0% | |
| CTTAAAAGATGTTCAACACA+AGG | + | chr1_2:25730912-25730931 | None:intergenic | 30.0% | |
| TACCAGAATGATGTAAGATT+AGG | - | chr1_2:25730966-25730985 | Msa0064520:intron | 30.0% | |
| ACCAGAATGATGTAAGATTA+GGG | - | chr1_2:25730967-25730986 | Msa0064520:intron | 30.0% | |
| ATTAGGGATAACAAGTTTGA+TGG | - | chr1_2:25730983-25731002 | Msa0064520:intron | 30.0% | |
| ATGGCTAGAAATGGTAAATA+TGG | - | chr1_2:25731002-25731021 | Msa0064520:intron | 30.0% | |
| AAATTGGCCAATTCTCAATT+CGG | + | chr1_2:25731104-25731123 | None:intergenic | 30.0% | |
| ! | TTTTTCATCAGTTCAATCGT+CGG | - | chr1_2:25731198-25731217 | Msa0064520:intron | 30.0% |
| !!! | TTTTCAGGTAATGGTTCATT+CGG | + | chr1_2:25731229-25731248 | None:intergenic | 30.0% |
| TTGTAAAGACGTGTACAATA+TGG | + | chr1_2:25731410-25731429 | None:intergenic | 30.0% | |
| GAACTATCAATTCTTGGTAT+TGG | + | chr1_2:25731558-25731577 | None:intergenic | 30.0% | |
| ! | ATACCAAGAATTGATAGTTC+TGG | - | chr1_2:25731558-25731577 | Msa0064520:intron | 30.0% |
| CATTTGTTCCTGTTATAATC+TGG | - | chr1_2:25731720-25731739 | Msa0064520:CDS | 30.0% | |
| ATAATATCAACTTTCGCTCT+TGG | - | chr1_2:25731796-25731815 | Msa0064520:CDS | 30.0% | |
| ATCACATTAACAGTTTATGC+AGG | + | chr1_2:25731894-25731913 | None:intergenic | 30.0% | |
| TGCATAAACTGTTAATGTGA+TGG | - | chr1_2:25731893-25731912 | Msa0064520:five_prime_UTR | 30.0% | |
| GATGAAACTGAGTTTGATTC+TGG | + | chr1_2:25728729-25728748 | None:intergenic | 35.0% | |
| AAAACAACCCTTTACTTCCA+AGG | - | chr1_2:25728850-25728869 | Msa0064520:CDS | 35.0% | |
| GATTGATACCTTGGAAGTAA+AGG | + | chr1_2:25728861-25728880 | None:intergenic | 35.0% | |
| CAAATGTTCAAGGGATCAAA+AGG | + | chr1_2:25728992-25729011 | None:intergenic | 35.0% | |
| ! | CTTTTGATCCCTTGAACATT+TGG | - | chr1_2:25728990-25729009 | Msa0064520:CDS | 35.0% |
| ACCATTCACCAAATGTTCAA+GGG | + | chr1_2:25729001-25729020 | None:intergenic | 35.0% | |
| TGTAGGATGATGATCATAGT+TGG | - | chr1_2:25729054-25729073 | Msa0064520:intron | 35.0% | |
| GATGATCATAGTTGGAATGT+TGG | - | chr1_2:25729062-25729081 | Msa0064520:intron | 35.0% | |
| GAAATGATATTCATGGTGAG+TGG | - | chr1_2:25729421-25729440 | Msa0064520:intron | 35.0% | |
| CATCTTTGTCTAAACCTATG+AGG | - | chr1_2:25729503-25729522 | Msa0064520:intron | 35.0% | |
| CTTATTTCCATAAACTCTCG+AGG | - | chr1_2:25730161-25730180 | Msa0064520:intron | 35.0% | |
| ACTGAGCTGTTTATCTAAAC+AGG | - | chr1_2:25730308-25730327 | Msa0064520:intron | 35.0% | |
| CTGAGCTGTTTATCTAAACA+GGG | - | chr1_2:25730309-25730328 | Msa0064520:intron | 35.0% | |
| GGAAGACAAAGATATATCCT+AGG | + | chr1_2:25730632-25730651 | None:intergenic | 35.0% | |
| AGGTCTGAGCAGAAAATTAT+CGG | + | chr1_2:25730667-25730686 | None:intergenic | 35.0% | |
| ACAGCTCTTACTAACAATCT+CGG | + | chr1_2:25730785-25730804 | None:intergenic | 35.0% | |
| TCCCTAATCTTACATCATTC+TGG | + | chr1_2:25730971-25730990 | None:intergenic | 35.0% | |
| ! | ACAAGTTTGATGGCTAGAAA+TGG | - | chr1_2:25730993-25731012 | Msa0064520:intron | 35.0% |
| AACTGAACCGAATTGAGAAT+TGG | - | chr1_2:25731094-25731113 | Msa0064520:intron | 35.0% | |
| ACAACAGAGATCAAACTAAC+CGG | + | chr1_2:25731128-25731147 | None:intergenic | 35.0% | |
| TTAAAAACTGGAGATCGAAG+AGG | + | chr1_2:25731257-25731276 | None:intergenic | 35.0% | |
| TATGGAAGAAACATTGATCG+TGG | + | chr1_2:25731392-25731411 | None:intergenic | 35.0% | |
| TCACCAGAACTATCAATTCT+TGG | + | chr1_2:25731564-25731583 | None:intergenic | 35.0% | |
| ! | GATTCTAAGAAGGAAACAAC+TGG | - | chr1_2:25731615-25731634 | Msa0064520:intron | 35.0% |
| ACATTGAGATGATACTCTCT+TGG | - | chr1_2:25731760-25731779 | Msa0064520:CDS | 35.0% | |
| !! | CTGTTAATGTGATGGATACT+TGG | - | chr1_2:25731901-25731920 | Msa0064520:five_prime_UTR | 35.0% |
| ! | TCCCTTGAACATTTGGTGAA+TGG | - | chr1_2:25728997-25729016 | Msa0064520:intron | 40.0% |
| CACCATTCACCAAATGTTCA+AGG | + | chr1_2:25729002-25729021 | None:intergenic | 40.0% | |
| TCTATGTAGTCGACATCACT+TGG | - | chr1_2:25729248-25729267 | Msa0064520:intron | 40.0% | |
| TGTCAATGTGATCACCTCAT+AGG | + | chr1_2:25729520-25729539 | None:intergenic | 40.0% | |
| TGTCTGACACCAACATAAGT+TGG | - | chr1_2:25729617-25729636 | Msa0064520:intron | 40.0% | |
| ! | TTTTCTTTTCCCATGTTCGC+AGG | - | chr1_2:25730357-25730376 | Msa0064520:intron | 40.0% |
| GACATCTTCTGCTTGTTTCA+CGG | - | chr1_2:25730398-25730417 | Msa0064520:intron | 40.0% | |
| CAAGTTGTGAGAGATTTCCA+AGG | - | chr1_2:25730542-25730561 | Msa0064520:intron | 40.0% | |
| TTGCTGCTGTAAGTAATCCT+AGG | - | chr1_2:25730612-25730631 | Msa0064520:intron | 40.0% | |
| GCATCAATTCCCCAGAAAAA+GGG | + | chr1_2:25730733-25730752 | None:intergenic | 40.0% | |
| AGCATCAATTCCCCAGAAAA+AGG | + | chr1_2:25730734-25730753 | None:intergenic | 40.0% | |
| GAGATTGTTAGTAAGAGCTG+TGG | - | chr1_2:25730784-25730803 | Msa0064520:intron | 40.0% | |
| ! | TCTTTTGCACCATTCCCTAA+AGG | - | chr1_2:25730811-25730830 | Msa0064520:intron | 40.0% |
| ! | ATGTGACTACCTTTAGGGAA+TGG | + | chr1_2:25730823-25730842 | None:intergenic | 40.0% |
| GATGTTCAACACAAGGGATT+AGG | + | chr1_2:25730905-25730924 | None:intergenic | 40.0% | |
| TTGAGAATTGGCCAATTTGC+CGG | - | chr1_2:25731106-25731125 | Msa0064520:intron | 40.0% | |
| GATCAAACTAACCGGCAAAT+TGG | + | chr1_2:25731120-25731139 | None:intergenic | 40.0% | |
| GACAATCGATAGTTCGATAC+AGG | + | chr1_2:25731370-25731389 | None:intergenic | 40.0% | |
| GGATGCTTCTTTACAACATC+TGG | - | chr1_2:25731492-25731511 | Msa0064520:intron | 40.0% | |
| TGCTTCTTTACAACATCTGG+AGG | - | chr1_2:25731495-25731514 | Msa0064520:intron | 40.0% | |
| TTACAACATCTGGAGGTTTG+AGG | - | chr1_2:25731502-25731521 | Msa0064520:intron | 40.0% | |
| !! | GATAGTTCTGGTGAAATGTG+TGG | - | chr1_2:25731570-25731589 | Msa0064520:intron | 40.0% |
| GTGTGGTTCAACTTTCAAAG+TGG | - | chr1_2:25731587-25731606 | Msa0064520:intron | 40.0% | |
| !! | AGTGGATGCTGATTCTAAGA+AGG | - | chr1_2:25731605-25731624 | Msa0064520:intron | 40.0% |
| GTTCCTGTTATAATCTGGTG+AGG | - | chr1_2:25731725-25731744 | Msa0064520:CDS | 40.0% | |
| TAGCCTCACCAGATTATAAC+AGG | + | chr1_2:25731731-25731750 | None:intergenic | 40.0% | |
| ATCAACTTTCGCTCTTGGAT+CGG | - | chr1_2:25731801-25731820 | Msa0064520:CDS | 40.0% | |
| ATCTGTTGCCAAAAGTCCAG+AGG | - | chr1_2:25728692-25728711 | Msa0064520:three_prime_UTR | 45.0% | |
| TCTGTTGCCAAAAGTCCAGA+GGG | - | chr1_2:25728693-25728712 | Msa0064520:three_prime_UTR | 45.0% | |
| ! | CTGTAAACCCTCTGGACTTT+TGG | + | chr1_2:25728703-25728722 | None:intergenic | 45.0% |
| TGTAGTCGACATCACTTGGT+TGG | - | chr1_2:25729252-25729271 | Msa0064520:intron | 45.0% | |
| CGACATCACTTGGTTGGATA+AGG | - | chr1_2:25729258-25729277 | Msa0064520:intron | 45.0% | |
| TCACTTGGTTGGATAAGGCT+TGG | - | chr1_2:25729263-25729282 | Msa0064520:intron | 45.0% | |
| GTCTCGTGTCCAACTTATGT+TGG | + | chr1_2:25729629-25729648 | None:intergenic | 45.0% | |
| AGACTGTTCGAGAGAGGTTA+TGG | - | chr1_2:25730103-25730122 | Msa0064520:CDS | 45.0% | |
| TGAGGTGACCATTGTCATAG+AGG | - | chr1_2:25730478-25730497 | Msa0064520:intron | 45.0% | |
| CCTGTAAGCCTCTATGACAA+TGG | + | chr1_2:25730489-25730508 | None:intergenic | 45.0% | |
| CCATTGTCATAGAGGCTTAC+AGG | - | chr1_2:25730486-25730505 | Msa0064520:intron | 45.0% | |
| ACAACTTGATCCGCAGGATA+GGG | + | chr1_2:25730530-25730549 | None:intergenic | 45.0% | |
| ACTTACAGCAGCAACAAACG+CGG | + | chr1_2:25730606-25730625 | None:intergenic | 45.0% | |
| !!! | ATGGGAGTGTTCCCTTTTTC+TGG | - | chr1_2:25730719-25730738 | Msa0064520:intron | 45.0% |
| !!! | TGGGAGTGTTCCCTTTTTCT+GGG | - | chr1_2:25730720-25730739 | Msa0064520:intron | 45.0% |
| !!! | GAGGTGAGGTTTTCAGGTAA+TGG | + | chr1_2:25731238-25731257 | None:intergenic | 45.0% |
| ! | ATCGAAGAGGTGAGGTTTTC+AGG | + | chr1_2:25731244-25731263 | None:intergenic | 45.0% |
| GATAGTTCGATACAGGCACA+AGG | + | chr1_2:25731363-25731382 | None:intergenic | 45.0% | |
| ! | ATTGGCTTCAACTCGTGAAG+CGG | + | chr1_2:25731540-25731559 | None:intergenic | 45.0% |
| TTAGCAGCACTACCAACTCT+TGG | + | chr1_2:25731645-25731664 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTATTTTTTTTATC+TGG | - | chr1_2:25728902-25728921 | Msa0064520:CDS | 5.0% |
| !!! | TTTTTTTATTTTTTTTATCT+GGG | - | chr1_2:25728903-25728922 | Msa0064520:CDS | 5.0% |
| TCTGGACTCTGTAAACCCTC+TGG | + | chr1_2:25728711-25728730 | None:intergenic | 50.0% | |
| CATGTGAGACTGTTCGAGAG+AGG | - | chr1_2:25730097-25730116 | Msa0064520:CDS | 50.0% | |
| CGGCTATCCTCGAGAGTTTA+TGG | + | chr1_2:25730171-25730190 | None:intergenic | 50.0% | |
| ! | TACAGGACTCTGAGAGATCG+TGG | - | chr1_2:25730503-25730522 | Msa0064520:intron | 50.0% |
| CACAACTTGATCCGCAGGAT+AGG | + | chr1_2:25730531-25730550 | None:intergenic | 50.0% | |
| TCTCTCACAACTTGATCCGC+AGG | + | chr1_2:25730536-25730555 | None:intergenic | 50.0% | |
| !!! | GGGAGTGTTCCCTTTTTCTG+GGG | - | chr1_2:25730721-25730740 | Msa0064520:intron | 50.0% |
| ATCTCTGTTGTACCGCAGTC+TGG | - | chr1_2:25731137-25731156 | Msa0064520:intron | 50.0% | |
| AACTGGAGATCGAAGAGGTG+AGG | + | chr1_2:25731252-25731271 | None:intergenic | 50.0% | |
| ACAACTGGCATGCCAAGAGT+TGG | - | chr1_2:25731630-25731649 | Msa0064520:intron | 50.0% | |
| !! | GAGTTGGTAGTGCTGCTAAC+TGG | - | chr1_2:25731646-25731665 | Msa0064520:CDS | 50.0% |
| CGCAAACAGCCTGCGAACAT+GGG | + | chr1_2:25730369-25730388 | None:intergenic | 55.0% | |
| CCATGTTCGCAGGCTGTTTG+CGG | - | chr1_2:25730367-25730386 | Msa0064520:intron | 55.0% | |
| AGATCGTGGTCCCTATCCTG+CGG | - | chr1_2:25730517-25730536 | Msa0064520:intron | 55.0% | |
| CCGCAAACAGCCTGCGAACA+TGG | + | chr1_2:25730370-25730389 | None:intergenic | 60.0% | |
| TCGCAGGCTGTTTGCGGTTG+TGG | - | chr1_2:25730373-25730392 | Msa0064520:intron | 60.0% | |
| ACCGCAGTCTGGTTGTGCTG+CGG | - | chr1_2:25731148-25731167 | Msa0064520:intron | 60.0% | |
| ACCGCAGCACAACCAGACTG+CGG | + | chr1_2:25731152-25731171 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 25728568 | 25731935 | 25728568 | ID=Msa0064520;Name=Msa0064520 |
| chr1_2 | mRNA | 25728568 | 25731935 | 25728568 | ID=Msa0064520-mRNA-1;Parent=Msa0064520;Name=Msa0064520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=104|1|1|1|1|1|4|252|250 |
| chr1_2 | exon | 25728568 | 25729010 | 25728568 | ID=Msa0064520-mRNA-1:exon:9176;Parent=Msa0064520-mRNA-1 |
| chr1_2 | exon | 25729671 | 25729791 | 25729671 | ID=Msa0064520-mRNA-1:exon:9175;Parent=Msa0064520-mRNA-1 |
| chr1_2 | exon | 25729884 | 25730124 | 25729884 | ID=Msa0064520-mRNA-1:exon:9174;Parent=Msa0064520-mRNA-1 |
| chr1_2 | exon | 25731632 | 25731935 | 25731632 | ID=Msa0064520-mRNA-1:exon:9173;Parent=Msa0064520-mRNA-1 |
| chr1_2 | five_prime_UTR | 25731832 | 25731935 | 25731832 | ID=Msa0064520-mRNA-1:five_prime_utr;Parent=Msa0064520-mRNA-1 |
| chr1_2 | CDS | 25731632 | 25731831 | 25731632 | ID=Msa0064520-mRNA-1:cds;Parent=Msa0064520-mRNA-1 |
| chr1_2 | CDS | 25729884 | 25730124 | 25729884 | ID=Msa0064520-mRNA-1:cds;Parent=Msa0064520-mRNA-1 |
| chr1_2 | CDS | 25729671 | 25729791 | 25729671 | ID=Msa0064520-mRNA-1:cds;Parent=Msa0064520-mRNA-1 |
| chr1_2 | CDS | 25728820 | 25729010 | 25728820 | ID=Msa0064520-mRNA-1:cds;Parent=Msa0064520-mRNA-1 |
| chr1_2 | three_prime_UTR | 25728568 | 25728819 | 25728568 | ID=Msa0064520-mRNA-1:three_prime_utr;Parent=Msa0064520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
