Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0342730 | Msa1394700 | 0.804731 | 1.876308e-49 | -8.615850e-47 |
| Msa0900900 | Msa1394700 | 0.802413 | 5.678060e-49 | -8.615850e-47 |
| Msa0947330 | Msa1394700 | 0.814832 | 1.260430e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATAAAATGTACATCTAAT+TGG | 0.219754 | tig0021888:+20988 | None:intergenic |
| TCATAGACCGTTGATGTTTC+AGG | 0.247801 | tig0021888:+23280 | None:intergenic |
| ATACAGACGCTCCACCTTAT+AGG | 0.256635 | tig0021888:+21027 | None:intergenic |
| GTATCTGATGTGGTTTAGTT+TGG | 0.276776 | tig0021888:-22198 | Msa1394700:three_prime_UTR |
| TATCTGATGTGGTTTAGTTT+GGG | 0.288954 | tig0021888:-22197 | Msa1394700:three_prime_UTR |
| GCAACTTTCAAAGTCATTGA+TGG | 0.343752 | tig0021888:-23305 | Msa1394700:CDS |
| TACAGACGCTCCACCTTATA+GGG | 0.372216 | tig0021888:+21028 | None:intergenic |
| TTGTAACTTGGTTTCGTCAA+TGG | 0.403372 | tig0021888:+24722 | None:intergenic |
| AAAGAGAAGGGTTAAGAAGA+AGG | 0.431629 | tig0021888:+24957 | None:intergenic |
| TTGAAAGTTGCAATGATGTC+AGG | 0.435539 | tig0021888:+23317 | None:intergenic |
| TGCAGGGAATACAAAAGAAA+AGG | 0.439924 | tig0021888:-21242 | Msa1394700:intron |
| TATATAGAGGTGGAAGGAAA+TGG | 0.445027 | tig0021888:-21181 | Msa1394700:three_prime_UTR |
| CAATGGAAGCTTGTGATGGC+TGG | 0.469926 | tig0021888:+24739 | None:intergenic |
| GGAGGTTCTACTTTGTAACT+TGG | 0.490121 | tig0021888:+24710 | None:intergenic |
| AAGAGAAGGGTTAAGAAGAA+GGG | 0.490215 | tig0021888:+24958 | None:intergenic |
| AAGAAGAAGGGAACGCATGC+AGG | 0.493257 | tig0021888:+24970 | None:intergenic |
| CAATTTCTAACTGATTCAAA+TGG | 0.497571 | tig0021888:-23241 | Msa1394700:intron |
| ATCTGATGTGGTTTAGTTTG+GGG | 0.497992 | tig0021888:-22196 | Msa1394700:three_prime_UTR |
| AAGAGAGAAGGTGGATGCAA+TGG | 0.505260 | tig0021888:+24901 | None:intergenic |
| ATTTGAAGGAATGTTGTTTG+AGG | 0.522652 | tig0021888:-24627 | Msa1394700:intron |
| TTTCTGCTGTTAGGAAGTGA+TGG | 0.542285 | tig0021888:+20950 | None:intergenic |
| GAAGGTGGATGCAATGGTGA+TGG | 0.542551 | tig0021888:+24907 | None:intergenic |
| GTGAATCTAGGCGAGGGAAG+TGG | 0.550537 | tig0021888:+22611 | None:intergenic |
| AACGTACAGTAGGTGAATCT+AGG | 0.553854 | tig0021888:+22599 | None:intergenic |
| TCAATGACAAAGCTATATAG+AGG | 0.556884 | tig0021888:-21194 | Msa1394700:three_prime_UTR |
| TTCTTTGTTAGTATCTGATG+TGG | 0.569322 | tig0021888:-22208 | Msa1394700:intron |
| GGATGCAATGGTGATGGAGA+AGG | 0.577050 | tig0021888:+24913 | None:intergenic |
| TCGTCAATGGAAGCTTGTGA+TGG | 0.591501 | tig0021888:+24735 | None:intergenic |
| TTTGCAGTTAATATCCTCGA+GGG | 0.607330 | tig0021888:-22645 | Msa1394700:intron |
| CAAAGCTATATAGAGGTGGA+AGG | 0.610830 | tig0021888:-21187 | Msa1394700:three_prime_UTR |
| AATGGTGATGGAGAAGGAAA+AGG | 0.620038 | tig0021888:+24919 | None:intergenic |
| CAGTAGGTGAATCTAGGCGA+GGG | 0.620624 | tig0021888:+22605 | None:intergenic |
| AACATTCCTTCAAATAGCTG+AGG | 0.630227 | tig0021888:+24635 | None:intergenic |
| CTAGAAGCAACAGTTCTGCA+AGG | 0.631238 | tig0021888:-22168 | Msa1394700:three_prime_UTR |
| GTTAGACATGATGAAAACAA+AGG | 0.640821 | tig0021888:-22137 | Msa1394700:intron |
| ATGACAAAGCTATATAGAGG+TGG | 0.642666 | tig0021888:-21191 | Msa1394700:three_prime_UTR |
| ACAGTAGGTGAATCTAGGCG+AGG | 0.644049 | tig0021888:+22604 | None:intergenic |
| GATGGTGCCTGAAACATCAA+CGG | 0.665675 | tig0021888:-23287 | Msa1394700:CDS |
| TGGTTGTCTCATCACCCTCG+AGG | 0.710003 | tig0021888:+22631 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAATATTATTTAAAATT+AGG | + | tig0021888:23519-23538 | None:intergenic | 0.0% |
| !!! | TTTAAATAATATTTTTAATT+AGG | - | tig0021888:23522-23541 | Msa1394700:intron | 0.0% |
| !!! | CAAATTTAGAATTAAAAAAA+TGG | + | tig0021888:21539-21558 | None:intergenic | 10.0% |
| !! | ATAAACAAAATATAAACAAA+TGG | + | tig0021888:21587-21606 | None:intergenic | 10.0% |
| !!! | TGTTATTATTATTATTTTCT+TGG | - | tig0021888:21648-21667 | Msa1394700:intron | 10.0% |
| !!! | GTTATTATTATTATTTTCTT+GGG | - | tig0021888:21649-21668 | Msa1394700:intron | 10.0% |
| !! | GTTAATATAATTTATCAAAA+AGG | + | tig0021888:22278-22297 | None:intergenic | 10.0% |
| !!! | GTTTATCATTTTTTTTTTAT+TGG | - | tig0021888:22411-22430 | Msa1394700:intron | 10.0% |
| !!! | TGTCATTTTATAATAAAAAT+TGG | - | tig0021888:24200-24219 | Msa1394700:intron | 10.0% |
| !!! | GTTTAAAATAAAGTTTTTTT+TGG | - | tig0021888:24874-24893 | Msa1394700:five_prime_UTR | 10.0% |
| !!! | CAGTTAATATTTTTATTTGT+GGG | + | tig0021888:21259-21278 | None:intergenic | 15.0% |
| !!! | TTAATCACAATTTTTTTTTC+TGG | - | tig0021888:21478-21497 | Msa1394700:intron | 15.0% |
| !!! | GTTTTAATTCTTATCAAATT+TGG | + | tig0021888:21966-21985 | None:intergenic | 15.0% |
| !! | TGATAAGAATTAAAACTTTA+AGG | - | tig0021888:21970-21989 | Msa1394700:intron | 15.0% |
| !!! | TATCATTTTTTTTTTATTGG+TGG | - | tig0021888:22414-22433 | Msa1394700:intron | 15.0% |
| !!! | ATGTTTTTCATTTAGAAATT+CGG | + | tig0021888:23836-23855 | None:intergenic | 15.0% |
| !! | ATATTATTAGTAATCACATT+AGG | + | tig0021888:23864-23883 | None:intergenic | 15.0% |
| !!! | ACTAATAATATGACAAATTT+TGG | - | tig0021888:23873-23892 | Msa1394700:intron | 15.0% |
| !!! | TTTGAAGTAAAAAAACATAT+GGG | + | tig0021888:24000-24019 | None:intergenic | 15.0% |
| !!! | TTTTGAAGTAAAAAAACATA+TGG | + | tig0021888:24001-24020 | None:intergenic | 15.0% |
| !! | TTAGTTAAAAGATTAAATTC+AGG | + | tig0021888:24024-24043 | None:intergenic | 15.0% |
| !! | AGAATTAACATACATAAAAA+TGG | - | tig0021888:24463-24482 | Msa1394700:intron | 15.0% |
| !! | ATATAAAATGTACATCTAAT+TGG | + | tig0021888:24940-24959 | None:intergenic | 15.0% |
| !! | AAAAAAGAAAGAAAAGAGAA+GGG | + | tig0021888:20983-21002 | None:intergenic | 20.0% |
| !! | AAAAAAAGAAAGAAAAGAGA+AGG | + | tig0021888:20984-21003 | None:intergenic | 20.0% |
| !!! | TAAAGATAAGAGTTTTATAG+AGG | + | tig0021888:21114-21133 | None:intergenic | 20.0% |
| !!! | CCAGTTAATATTTTTATTTG+TGG | + | tig0021888:21260-21279 | None:intergenic | 20.0% |
| !! | CCACAAATAAAAATATTAAC+TGG | - | tig0021888:21257-21276 | Msa1394700:intron | 20.0% |
| !! | AATCTACATATAAAAGAAGA+TGG | + | tig0021888:21439-21458 | None:intergenic | 20.0% |
| !!! | ATATTTGTGATTTAGCATTT+TGG | - | tig0021888:21697-21716 | Msa1394700:intron | 20.0% |
| !! | AAAACAAAATTAACACTCAA+AGG | + | tig0021888:21827-21846 | None:intergenic | 20.0% |
| !! | ACATAATAATCAAATGCATA+AGG | + | tig0021888:22001-22020 | None:intergenic | 20.0% |
| !! | TTATGCATTTGATTATTATG+TGG | - | tig0021888:22000-22019 | Msa1394700:intron | 20.0% |
| !! | GATAAATTATATTAACACCT+TGG | - | tig0021888:22282-22301 | Msa1394700:intron | 20.0% |
| !! | TGGATTACTTAATTATGATT+TGG | - | tig0021888:22734-22753 | Msa1394700:intron | 20.0% |
| !! | TTTGTTTGTTTGTTTGATAT+TGG | + | tig0021888:22958-22977 | None:intergenic | 20.0% |
| !! | TTAATTTAGAAGTCAACAAA+GGG | + | tig0021888:22993-23012 | None:intergenic | 20.0% |
| !!! | ATTAGTCTATGAGTATAATT+GGG | + | tig0021888:23150-23169 | None:intergenic | 20.0% |
| !!! | AATTAGTCTATGAGTATAAT+TGG | + | tig0021888:23151-23170 | None:intergenic | 20.0% |
| !! | TATACTCATAGACTAATTTA+TGG | - | tig0021888:23153-23172 | Msa1394700:intron | 20.0% |
| !! | AGATACAATAAAACAGTAAA+AGG | + | tig0021888:23640-23659 | None:intergenic | 20.0% |
| !!! | AGAAAGTAACATATTTTCTA+GGG | + | tig0021888:24159-24178 | None:intergenic | 20.0% |
| !!! | AAGAAAGTAACATATTTTCT+AGG | + | tig0021888:24160-24179 | None:intergenic | 20.0% |
| !!! | TGTTACTTTCTTTTTAAATG+TGG | - | tig0021888:24168-24187 | Msa1394700:intron | 20.0% |
| !!! | AATATTTTTTGTATTCAGCT+GGG | + | tig0021888:24314-24333 | None:intergenic | 20.0% |
| !!! | TAATATTTTTTGTATTCAGC+TGG | + | tig0021888:24315-24334 | None:intergenic | 20.0% |
| !! | AAAATATTATAGATTGCTTC+AGG | - | tig0021888:24326-24345 | Msa1394700:intron | 20.0% |
| !!! | TTCTAATATACATCCTTTTT+AGG | + | tig0021888:24447-24466 | None:intergenic | 20.0% |
| !! | TAATATACATCCTTCTAATT+AGG | + | tig0021888:24490-24509 | None:intergenic | 20.0% |
| !! | GGATGTATATTAGAAATATA+AGG | - | tig0021888:24498-24517 | Msa1394700:intron | 20.0% |
| !!! | GGTTTTATTTTAGTATGAAG+CGG | + | tig0021888:21069-21088 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGACTGTCATTTC+TGG | - | tig0021888:21155-21174 | Msa1394700:three_prime_UTR | 25.0% |
| !! | TTTTATTGTGAATATCAAGG+AGG | + | tig0021888:21236-21255 | None:intergenic | 25.0% |
| !!! | GTTCTTTTTCACTATTTTTG+TGG | - | tig0021888:21328-21347 | Msa1394700:intron | 25.0% |
| !!! | CTATATTTTTACAAGAAACG+AGG | + | tig0021888:21407-21426 | None:intergenic | 25.0% |
| ! | ATGCTAAATCACAAATATAG+AGG | + | tig0021888:21695-21714 | None:intergenic | 25.0% |
| ! | TTCTAATGACATGTTAATGA+AGG | - | tig0021888:21789-21808 | Msa1394700:intron | 25.0% |
| ! | TATTATCAGATCAGACAATA+TGG | + | tig0021888:21872-21891 | None:intergenic | 25.0% |
| ! | AAGATGATAATCTGATCTAA+AGG | - | tig0021888:21891-21910 | Msa1394700:intron | 25.0% |
| !! | GTTTAGAAAAGTTGCATTTT+TGG | - | tig0021888:22132-22151 | Msa1394700:intron | 25.0% |
| !!! | CATTTTTGGATATAACTTAC+TGG | - | tig0021888:22146-22165 | Msa1394700:three_prime_UTR | 25.0% |
| !!! | TTTTTTATGCAATAAGTCCA+AGG | + | tig0021888:22302-22321 | None:intergenic | 25.0% |
| ! | TTCAAACATACTTTATGACT+TGG | - | tig0021888:22364-22383 | Msa1394700:intron | 25.0% |
| !! | AAAATGTTAATAGAAAGTGC+AGG | + | tig0021888:22530-22549 | None:intergenic | 25.0% |
| !! | CAATTTCTAACTGATTCAAA+TGG | - | tig0021888:22684-22703 | Msa1394700:intron | 25.0% |
| ! | ATTTATGAACTTCTTCACTA+TGG | - | tig0021888:22709-22728 | Msa1394700:intron | 25.0% |
| !!! | TTGATATTGGTGCTAAATTT+AGG | + | tig0021888:22945-22964 | None:intergenic | 25.0% |
| ! | GTTAATTTAGAAGTCAACAA+AGG | + | tig0021888:22994-23013 | None:intergenic | 25.0% |
| ! | GCGAAGAAACATAATTAAAA+TGG | + | tig0021888:23361-23380 | None:intergenic | 25.0% |
| !! | ATGACAATTTTTGTATCATC+TGG | - | tig0021888:23472-23491 | Msa1394700:intron | 25.0% |
| ! | ATAGCTTATTCTATGACAAT+TGG | + | tig0021888:23574-23593 | None:intergenic | 25.0% |
| ! | TTTAGAAATTCGGTAGAAAA+TGG | + | tig0021888:23826-23845 | None:intergenic | 25.0% |
| !!! | TATGACAAATTTTGGTTTCT+CGG | - | tig0021888:23881-23900 | Msa1394700:intron | 25.0% |
| !!! | ATTTAAGACTTCAGGTTTTT+CGG | + | tig0021888:23967-23986 | None:intergenic | 25.0% |
| !! | TCAAAAAGATTTAAGACTTC+AGG | + | tig0021888:23975-23994 | None:intergenic | 25.0% |
| !!! | TACATGTAATTTCGAGTTAA+AGG | + | tig0021888:24075-24094 | None:intergenic | 25.0% |
| !!! | GAAATTACATGTACCTTTTT+TGG | - | tig0021888:24082-24101 | Msa1394700:intron | 25.0% |
| !!! | GTTCATCAAAAAAGTTTTGA+AGG | + | tig0021888:24388-24407 | None:intergenic | 25.0% |
| ! | TAAAAATGGTCCTAATTAGA+AGG | - | tig0021888:24477-24496 | Msa1394700:intron | 25.0% |
| TGATGAAAAAAGAAGAGAGA+AGG | + | tig0021888:21039-21058 | None:intergenic | 30.0% | |
| !!! | TTATTTTAGTATGAAGCGGT+CGG | + | tig0021888:21065-21084 | None:intergenic | 30.0% |
| !! | AGAGTTTTATAGAGGAGAAA+GGG | + | tig0021888:21106-21125 | None:intergenic | 30.0% |
| !! | AAGAGTTTTATAGAGGAGAA+AGG | + | tig0021888:21107-21126 | None:intergenic | 30.0% |
| !!! | GGGTTTTATTGTGAATATCA+AGG | + | tig0021888:21239-21258 | None:intergenic | 30.0% |
| ! | ATTTGAAGGAATGTTGTTTG+AGG | - | tig0021888:21298-21317 | Msa1394700:intron | 30.0% |
| ! | GTTTTATCCGATGCAAAAAT+TGG | + | tig0021888:21359-21378 | None:intergenic | 30.0% |
| AAAAAAATGGCAGAGTACAA+AGG | + | tig0021888:21526-21545 | None:intergenic | 30.0% | |
| ATTCTTATCAAATTTGGTCG+AGG | + | tig0021888:21960-21979 | None:intergenic | 30.0% | |
| GTAAATCAACGATTCTTGAA+TGG | - | tig0021888:22061-22080 | Msa1394700:intron | 30.0% | |
| TGGTGGTAAATAAGTCTAAA+TGG | - | tig0021888:22431-22450 | Msa1394700:intron | 30.0% | |
| ! | CTGATAACTTTGTTTCTTCT+TGG | - | tig0021888:22561-22580 | Msa1394700:intron | 30.0% |
| !! | ACTTTGTTTCTTCTTGGTTT+TGG | - | tig0021888:22567-22586 | Msa1394700:intron | 30.0% |
| !!! | TTTCTTCTTGGTTTTGGATT+AGG | - | tig0021888:22573-22592 | Msa1394700:intron | 30.0% |
| !!! | TTCTTCTTGGTTTTGGATTA+GGG | - | tig0021888:22574-22593 | Msa1394700:intron | 30.0% |
| GATGATTAATTCGATCAGTT+TGG | - | tig0021888:23034-23053 | Msa1394700:intron | 30.0% | |
| ! | ATCAGTTTGGTAATATCTGT+TGG | - | tig0021888:23047-23066 | Msa1394700:intron | 30.0% |
| ! | TCAGTTTGGTAATATCTGTT+GGG | - | tig0021888:23048-23067 | Msa1394700:intron | 30.0% |
| ACTTATCAAGAACAAAAAGC+AGG | + | tig0021888:23102-23121 | None:intergenic | 30.0% | |
| ! | ATGTAAGCATTCCTTTTAAG+AGG | + | tig0021888:23187-23206 | None:intergenic | 30.0% |
| TTCTATGACAATTGGCATAA+GGG | + | tig0021888:23566-23585 | None:intergenic | 30.0% | |
| ATTCTATGACAATTGGCATA+AGG | + | tig0021888:23567-23586 | None:intergenic | 30.0% | |
| TTCTTTGTTAGTATCTGATG+TGG | - | tig0021888:23717-23736 | Msa1394700:intron | 30.0% | |
| ! | TATCTGATGTGGTTTAGTTT+GGG | - | tig0021888:23728-23747 | Msa1394700:intron | 30.0% |
| GTTAGACATGATGAAAACAA+AGG | - | tig0021888:23788-23807 | Msa1394700:intron | 30.0% | |
| ! | CTTGAACAATAAACTTTTCC+TGG | - | tig0021888:24231-24250 | Msa1394700:intron | 30.0% |
| TGAGACAACAACAAATATGA+AGG | + | tig0021888:24605-24624 | None:intergenic | 30.0% | |
| !!! | TCCATCTTCAAATTTTTTGC+AGG | - | tig0021888:24666-24685 | Msa1394700:five_prime_UTR | 30.0% |
| !!! | CCATCTTCAAATTTTTTGCA+GGG | - | tig0021888:24667-24686 | Msa1394700:five_prime_UTR | 30.0% |
| TCAATGACAAAGCTATATAG+AGG | - | tig0021888:24731-24750 | Msa1394700:five_prime_UTR | 30.0% | |
| !!! | AAGTTTTTTTTGGCCCTATA+AGG | - | tig0021888:24884-24903 | Msa1394700:five_prime_UTR | 30.0% |
| AAGAGAAGGGTTAAGAAGAA+GGG | + | tig0021888:20970-20989 | None:intergenic | 35.0% | |
| AAAGAGAAGGGTTAAGAAGA+AGG | + | tig0021888:20971-20990 | None:intergenic | 35.0% | |
| TGAAAAAAGAAGAGAGAAGG+TGG | + | tig0021888:21036-21055 | None:intergenic | 35.0% | |
| !! | AGTTTTATAGAGGAGAAAGG+GGG | + | tig0021888:21104-21123 | None:intergenic | 35.0% |
| !! | GAGTTTTATAGAGGAGAAAG+GGG | + | tig0021888:21105-21124 | None:intergenic | 35.0% |
| TTGTAACTTGGTTTCGTCAA+TGG | + | tig0021888:21206-21225 | None:intergenic | 35.0% | |
| ! | TTTTCACCTCAGCTATTTGA+AGG | - | tig0021888:21284-21303 | Msa1394700:intron | 35.0% |
| AACATTCCTTCAAATAGCTG+AGG | + | tig0021888:21293-21312 | None:intergenic | 35.0% | |
| ! | GGATCTACCAATTTTTGCAT+CGG | - | tig0021888:21349-21368 | Msa1394700:intron | 35.0% |
| CTCATCATAACATGGGAAAT+TGG | + | tig0021888:21927-21946 | None:intergenic | 35.0% | |
| AATGGCTCTCATCATAACAT+GGG | + | tig0021888:21934-21953 | None:intergenic | 35.0% | |
| TAATGGCTCTCATCATAACA+TGG | + | tig0021888:21935-21954 | None:intergenic | 35.0% | |
| ! | ATGCTTTCAAGTACCTTTCT+TGG | - | tig0021888:22026-22045 | Msa1394700:intron | 35.0% |
| ! | AAGTACCTTTCTTGGACTTT+TGG | - | tig0021888:22034-22053 | Msa1394700:intron | 35.0% |
| TTGGATATAACTTACTGGTG+TGG | - | tig0021888:22151-22170 | Msa1394700:three_prime_UTR | 35.0% | |
| TGGATATAACTTACTGGTGT+GGG | - | tig0021888:22152-22171 | Msa1394700:three_prime_UTR | 35.0% | |
| GCTGTAAGTGAGGTAAATTT+GGG | - | tig0021888:22386-22405 | Msa1394700:intron | 35.0% | |
| !!! | TCTTCTTGGTTTTGGATTAG+GGG | - | tig0021888:22575-22594 | Msa1394700:intron | 35.0% |
| TTGAAAGTTGCAATGATGTC+AGG | + | tig0021888:22611-22630 | None:intergenic | 35.0% | |
| GCAACTTTCAAAGTCATTGA+TGG | - | tig0021888:22620-22639 | Msa1394700:CDS | 35.0% | |
| TGAACTTCTTCACTATGGAA+TGG | - | tig0021888:22714-22733 | Msa1394700:intron | 35.0% | |
| AACTTTGCTCGCTAATATCT+TGG | - | tig0021888:22785-22804 | Msa1394700:intron | 35.0% | |
| ACTTTGCTCGCTAATATCTT+GGG | - | tig0021888:22786-22805 | Msa1394700:intron | 35.0% | |
| GAAGTCAACAAAGGGAAATT+TGG | + | tig0021888:22985-23004 | None:intergenic | 35.0% | |
| TGGTTGTTTAGCCTCTTAAA+AGG | - | tig0021888:23173-23192 | Msa1394700:intron | 35.0% | |
| ! | TTTTGCAGTTAATATCCTCG+AGG | - | tig0021888:23279-23298 | Msa1394700:CDS | 35.0% |
| TTTGCAGTTAATATCCTCGA+GGG | - | tig0021888:23280-23299 | Msa1394700:CDS | 35.0% | |
| GAGAGAAAAAAACGTACAGT+AGG | + | tig0021888:23339-23358 | None:intergenic | 35.0% | |
| CTACACATCAAGCTTGATAA+AGG | + | tig0021888:23597-23616 | None:intergenic | 35.0% | |
| GTATCTGATGTGGTTTAGTT+TGG | - | tig0021888:23727-23746 | Msa1394700:intron | 35.0% | |
| !! | ATCTGATGTGGTTTAGTTTG+GGG | - | tig0021888:23729-23748 | Msa1394700:intron | 35.0% |
| !!! | ATGTACCTTTTTTGGACTCT+TGG | - | tig0021888:24090-24109 | Msa1394700:intron | 35.0% |
| ! | ACAATAAACTTTTCCTGGTG+TGG | - | tig0021888:24236-24255 | Msa1394700:intron | 35.0% |
| ! | CAATAAACTTTTCCTGGTGT+GGG | - | tig0021888:24237-24256 | Msa1394700:intron | 35.0% |
| CTTGCTTCTCAGATATACAA+AGG | + | tig0021888:24528-24547 | None:intergenic | 35.0% | |
| CCCTGCAAAAAATTTGAAGA+TGG | + | tig0021888:24670-24689 | None:intergenic | 35.0% | |
| TGCAGGGAATACAAAAGAAA+AGG | - | tig0021888:24683-24702 | Msa1394700:five_prime_UTR | 35.0% | |
| ATGACAAAGCTATATAGAGG+TGG | - | tig0021888:24734-24753 | Msa1394700:five_prime_UTR | 35.0% | |
| TATATAGAGGTGGAAGGAAA+TGG | - | tig0021888:24744-24763 | Msa1394700:five_prime_UTR | 35.0% | |
| TTGAAAAAGATCTGCAACGA+AGG | - | tig0021888:24770-24789 | Msa1394700:five_prime_UTR | 35.0% | |
| !!! | TTTTTTTTGGCCCTATAAGG+TGG | - | tig0021888:24887-24906 | Msa1394700:five_prime_UTR | 35.0% |
| !! | AATGGTGATGGAGAAGGAAA+AGG | + | tig0021888:21009-21028 | None:intergenic | 40.0% |
| ! | GTTTTATAGAGGAGAAAGGG+GGG | + | tig0021888:21103-21122 | None:intergenic | 40.0% |
| GGAGGTTCTACTTTGTAACT+TGG | + | tig0021888:21218-21237 | None:intergenic | 40.0% | |
| CAAATTTGGTCGAGGTGTAA+TGG | + | tig0021888:21952-21971 | None:intergenic | 40.0% | |
| CAACACCAAAAGTCCAAGAA+AGG | + | tig0021888:22042-22061 | None:intergenic | 40.0% | |
| ! | TTATGACTTGGCTGTAAGTG+AGG | - | tig0021888:22376-22395 | Msa1394700:intron | 40.0% |
| GGCTGTAAGTGAGGTAAATT+TGG | - | tig0021888:22385-22404 | Msa1394700:intron | 40.0% | |
| !!! | CTTCTTGGTTTTGGATTAGG+GGG | - | tig0021888:22576-22595 | Msa1394700:intron | 40.0% |
| !!! | TTCTTGGTTTTGGATTAGGG+GGG | - | tig0021888:22577-22596 | Msa1394700:intron | 40.0% |
| TCATAGACCGTTGATGTTTC+AGG | + | tig0021888:22648-22667 | None:intergenic | 40.0% | |
| AACGTACAGTAGGTGAATCT+AGG | + | tig0021888:23329-23348 | None:intergenic | 40.0% | |
| CCCATCTATTCGAAATGCTT+GGG | + | tig0021888:23414-23433 | None:intergenic | 40.0% | |
| CCCAAGCATTTCGAATAGAT+GGG | - | tig0021888:23411-23430 | Msa1394700:intron | 40.0% | |
| TCCCATCTATTCGAAATGCT+TGG | + | tig0021888:23415-23434 | None:intergenic | 40.0% | |
| AGCATTTCGAATAGATGGGA+TGG | - | tig0021888:23415-23434 | Msa1394700:intron | 40.0% | |
| GCATTTCGAATAGATGGGAT+GGG | - | tig0021888:23416-23435 | Msa1394700:intron | 40.0% | |
| AATAGATGGGATGGGACAAA+AGG | - | tig0021888:23424-23443 | Msa1394700:intron | 40.0% | |
| ACACACCAAGAGTCCAAAAA+AGG | + | tig0021888:24098-24117 | None:intergenic | 40.0% | |
| GGTGTGTTGTAAATCTTCAG+TGG | - | tig0021888:24111-24130 | Msa1394700:intron | 40.0% | |
| !!! | CCTTTTTAGGTGTACTTTGC+AGG | + | tig0021888:24434-24453 | None:intergenic | 40.0% |
| CCTGCAAAGTACACCTAAAA+AGG | - | tig0021888:24431-24450 | Msa1394700:intron | 40.0% | |
| CTGAGAAGCAAGAAATGAAG+AGG | - | tig0021888:24536-24555 | Msa1394700:intron | 40.0% | |
| AATGAAGAGGTCAACCACTA+TGG | - | tig0021888:24549-24568 | Msa1394700:intron | 40.0% | |
| TGTACTACTCCAAACCATAG+TGG | + | tig0021888:24566-24585 | None:intergenic | 40.0% | |
| CAAAGCTATATAGAGGTGGA+AGG | - | tig0021888:24738-24757 | Msa1394700:five_prime_UTR | 40.0% | |
| AAGAGAGAAGGTGGATGCAA+TGG | + | tig0021888:21027-21046 | None:intergenic | 45.0% | |
| TCGTCAATGGAAGCTTGTGA+TGG | + | tig0021888:21193-21212 | None:intergenic | 45.0% | |
| !!! | TCTTGGTTTTGGATTAGGGG+GGG | - | tig0021888:22578-22597 | Msa1394700:intron | 45.0% |
| GATGGTGCCTGAAACATCAA+CGG | - | tig0021888:22638-22657 | Msa1394700:CDS | 45.0% | |
| GCCCAAGCATTTCGAATAGA+TGG | - | tig0021888:23410-23429 | Msa1394700:intron | 45.0% | |
| CTAGAAGCAACAGTTCTGCA+AGG | - | tig0021888:23757-23776 | Msa1394700:intron | 45.0% | |
| AGAGGTCAACCACTATGGTT+TGG | - | tig0021888:24554-24573 | Msa1394700:intron | 45.0% | |
| TACAGACGCTCCACCTTATA+GGG | + | tig0021888:24900-24919 | None:intergenic | 45.0% | |
| ATACAGACGCTCCACCTTAT+AGG | + | tig0021888:24901-24920 | None:intergenic | 45.0% | |
| !! | GGATGCAATGGTGATGGAGA+AGG | + | tig0021888:21015-21034 | None:intergenic | 50.0% |
| GAAGGTGGATGCAATGGTGA+TGG | + | tig0021888:21021-21040 | None:intergenic | 50.0% | |
| CAATGGAAGCTTGTGATGGC+TGG | + | tig0021888:21189-21208 | None:intergenic | 50.0% | |
| CAGTAGGTGAATCTAGGCGA+GGG | + | tig0021888:23323-23342 | None:intergenic | 50.0% | |
| ACAGTAGGTGAATCTAGGCG+AGG | + | tig0021888:23324-23343 | None:intergenic | 50.0% | |
| TTTCCTGGTGTGGGTACTTC+AGG | - | tig0021888:24246-24265 | Msa1394700:intron | 50.0% | |
| GAAAGGGGGGATCATGATGG+TGG | + | tig0021888:21090-21109 | None:intergenic | 55.0% | |
| GGAGAAAGGGGGGATCATGA+TGG | + | tig0021888:21093-21112 | None:intergenic | 55.0% | |
| TGGTTGTCTCATCACCCTCG+AGG | + | tig0021888:23297-23316 | None:intergenic | 55.0% | |
| GTGAATCTAGGCGAGGGAAG+TGG | + | tig0021888:23317-23336 | None:intergenic | 55.0% | |
| ! | CATCCTGAAGTACCCACACC+AGG | + | tig0021888:24252-24271 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021888 | gene | 20957 | 24990 | 20957 | ID=Msa1394700;Name=Msa1394700 |
| tig0021888 | mRNA | 20957 | 24990 | 20957 | ID=Msa1394700-mRNA-1;Parent=Msa1394700;Name=Msa1394700-mRNA-1;_AED=0.40;_eAED=0.40;_QI=371|1|1|1|0.2|0|6|362|48 |
| tig0021888 | exon | 20957 | 21098 | 20957 | ID=Msa1394700-mRNA-1:exon:14528;Parent=Msa1394700-mRNA-1 |
| tig0021888 | exon | 21133 | 21259 | 21133 | ID=Msa1394700-mRNA-1:exon:14527;Parent=Msa1394700-mRNA-1 |
| tig0021888 | exon | 22138 | 22219 | 22138 | ID=Msa1394700-mRNA-1:exon:14526;Parent=Msa1394700-mRNA-1 |
| tig0021888 | exon | 22606 | 22660 | 22606 | ID=Msa1394700-mRNA-1:exon:14525;Parent=Msa1394700-mRNA-1 |
| tig0021888 | exon | 23242 | 23352 | 23242 | ID=Msa1394700-mRNA-1:exon:14524;Parent=Msa1394700-mRNA-1 |
| tig0021888 | exon | 24628 | 24990 | 24628 | ID=Msa1394700-mRNA-1:exon:14523;Parent=Msa1394700-mRNA-1 |
| tig0021888 | five_prime_UTR | 24628 | 24990 | 24628 | ID=Msa1394700-mRNA-1:five_prime_utr;Parent=Msa1394700-mRNA-1 |
| tig0021888 | five_prime_UTR | 23345 | 23352 | 23345 | ID=Msa1394700-mRNA-1:five_prime_utr;Parent=Msa1394700-mRNA-1 |
| tig0021888 | CDS | 23242 | 23344 | 23242 | ID=Msa1394700-mRNA-1:cds;Parent=Msa1394700-mRNA-1 |
| tig0021888 | CDS | 22617 | 22660 | 22617 | ID=Msa1394700-mRNA-1:cds;Parent=Msa1394700-mRNA-1 |
| tig0021888 | three_prime_UTR | 22606 | 22616 | 22606 | ID=Msa1394700-mRNA-1:three_prime_utr;Parent=Msa1394700-mRNA-1 |
| tig0021888 | three_prime_UTR | 22138 | 22219 | 22138 | ID=Msa1394700-mRNA-1:three_prime_utr;Parent=Msa1394700-mRNA-1 |
| tig0021888 | three_prime_UTR | 21133 | 21259 | 21133 | ID=Msa1394700-mRNA-1:three_prime_utr;Parent=Msa1394700-mRNA-1 |
| tig0021888 | three_prime_UTR | 20957 | 21098 | 20957 | ID=Msa1394700-mRNA-1:three_prime_utr;Parent=Msa1394700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
