AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0900900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900900 MtrunA17_Chr3g0132111 59.259 54 22 0 21 74 26 79 8.95e-13 62.0
Msa0900900 MtrunA17_Chr8g0386311 67.391 46 15 0 30 75 36 81 1.81e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900900 AT5G63490.1 61.224 49 18 1 27 74 45 93 4.62e-11 57.4
Msa0900900 AT5G63490.2 61.224 49 18 1 27 74 45 93 4.62e-11 57.4

Find 85 sgRNAs with CRISPR-Local

Find 583 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTTGAGTTTGGGGATA+TGG 0.204068 6_1:-97124759 Msa0900900:five_prime_UTR
ATATAAAATGTACATCTAAT+TGG 0.219754 6_1:+97118138 None:intergenic
CAATGGGATATGGTTGAGTT+TGG 0.233721 6_1:-97124767 Msa0900900:five_prime_UTR
TCATAGACCGTTGATGTTTC+AGG 0.247801 6_1:+97120402 None:intergenic
GTATCTGATGTGGTTTAGTT+TGG 0.276776 6_1:-97119311 Msa0900900:three_prime_UTR
TAGGAAGAAGAGAAAGAAAA+AGG 0.281810 6_1:+97129816 None:intergenic
CATTTCCTTCCACCTCTATA+TGG 0.284611 6_1:+97118299 None:intergenic
TATTGGATGTGGTTGAGTTT+GGG 0.284981 6_1:-97127117 Msa0900900:five_prime_UTR
TATCTGATGTGGTTTAGTTT+GGG 0.288954 6_1:-97119310 Msa0900900:three_prime_UTR
TCAAAACCATTTGGTGGGTT+TGG 0.293130 6_1:-97125681 Msa0900900:five_prime_UTR
TTCAGACGCTCCACCTTATA+TGG 0.309782 6_1:+97118178 None:intergenic
GTATTGGATGTGGTTGAGTT+TGG 0.319554 6_1:-97127118 Msa0900900:five_prime_UTR
GCAACTTTCAAAGTCATTGA+TGG 0.343752 6_1:-97120427 Msa0900900:CDS
GTGGTGATTGTGTTCTTAAA+TGG 0.344282 6_1:+97129689 None:intergenic
ACATATTGGACTTCAATTCT+TGG 0.348432 6_1:-97125580 Msa0900900:five_prime_UTR
GTACCTTCATGGCTGCTATA+AGG 0.356886 6_1:+97125528 None:intergenic
TGTTTGTTAGCAATGGGATA+TGG 0.369203 6_1:-97124777 Msa0900900:intron
AATGGGATATGGTTGAGTTT+GGG 0.371906 6_1:-97124766 Msa0900900:five_prime_UTR
TTCAGTGACGTTGTATCAAA+TGG 0.391233 6_1:-97123564 Msa0900900:intron
AATTCATCATCAAAACCATT+TGG 0.420979 6_1:-97125690 Msa0900900:five_prime_UTR
TTGAAAGTTGCAATGATGTC+AGG 0.435539 6_1:+97120439 None:intergenic
TGCAGGGAATACAAAAGAAA+AGG 0.439924 6_1:-97118359 Msa0900900:intron
CATATAGAGGTGGAAGGAAA+TGG 0.443909 6_1:-97118298 Msa0900900:three_prime_UTR
AACTAACAGACAGAACATAT+TGG 0.455086 6_1:-97125594 Msa0900900:five_prime_UTR
CACCATCACATGTAAGGAAT+GGG 0.470717 6_1:+97127824 None:intergenic
TTTGCAGTTAATATCCTTGA+GGG 0.481204 6_1:-97119758 Msa0900900:intron
AATACCTGCTCTGATGTTGA+AGG 0.486227 6_1:+97127731 None:intergenic
CCACCATCACATGTAAGGAA+TGG 0.487274 6_1:+97127823 None:intergenic
CATCATCAAAACCATTTGGT+GGG 0.490956 6_1:-97125686 Msa0900900:five_prime_UTR
AGCCGCCACCATCACATGTA+AGG 0.491245 6_1:+97127818 None:intergenic
CAATTTCTAACTGATTCAAA+TGG 0.497571 6_1:-97120342 Msa0900900:intron
TATTGGACTTCAATTCTTGG+AGG 0.497740 6_1:-97125577 Msa0900900:five_prime_UTR
ATCTGATGTGGTTTAGTTTG+GGG 0.497992 6_1:-97119309 Msa0900900:three_prime_UTR
CATATACGCTATACTACCTT+CGG 0.498868 6_1:+97125629 None:intergenic
CTGTGCTTAGTCTCTGATGT+TGG 0.504230 6_1:+97127766 None:intergenic
ATTGGATGTGGTTGAGTTTG+GGG 0.506776 6_1:-97127116 Msa0900900:five_prime_UTR
GGTCGAACGGTTGGCATGCA+AGG 0.509562 6_1:+97129713 None:intergenic
GTACAGTATGTGAATCTAGC+TGG 0.510612 6_1:+97125187 None:intergenic
CAAGGCTACAACTCTGATGT+TGG 0.514552 6_1:+97129731 None:intergenic
GATAACAGACCTGTCAAAAG+AGG 0.517452 6_1:+97123500 None:intergenic
AAATGGACGGATGGCTACGA+TGG 0.519451 6_1:-97123547 Msa0900900:CDS
TCATCATCAAAACCATTTGG+TGG 0.520783 6_1:-97125687 Msa0900900:five_prime_UTR
ATGGGATATGGTTGAGTTTG+GGG 0.521966 6_1:-97124765 Msa0900900:five_prime_UTR
TACAGTATGTGAATCTAGCT+GGG 0.522078 6_1:+97125188 None:intergenic
GGAGGAAATTCACAAAGATA+AGG 0.522244 6_1:-97125559 Msa0900900:five_prime_UTR
TTGTTTGTTAGTATTGGATG+TGG 0.532339 6_1:-97127128 Msa0900900:intron
GTTAAATGAGAATGAATGTA+TGG 0.538944 6_1:+97129790 None:intergenic
TTTCTGCTGTTAGGAAGTGA+TGG 0.542285 6_1:+97118100 None:intergenic
GGCCCATTCCTTACATGTGA+TGG 0.543482 6_1:-97127826 Msa0900900:five_prime_UTR
GTGAATCTAGGCGAGGGAAG+TGG 0.550537 6_1:+97119724 None:intergenic
TTAAATGGAGGTCGAACGGT+TGG 0.553776 6_1:+97129704 None:intergenic
AACGTACAGTAGGTGAATCT+AGG 0.553854 6_1:+97119712 None:intergenic
ATCGCCTTCAACATCAGAGC+AGG 0.555332 6_1:-97127735 Msa0900900:intron
TTCTTTGTTAGTATCTGATG+TGG 0.569322 6_1:-97119321 Msa0900900:intron
TCAATGACAAAGCCATATAG+AGG 0.571112 6_1:-97118311 Msa0900900:three_prime_UTR
TTGCCTTATAGCAGCCATGA+AGG 0.584074 6_1:-97125531 Msa0900900:intron
CGTTGTATCAAATGGACGGA+TGG 0.590639 6_1:-97123556 Msa0900900:CDS
GTTCTTAAATGGAGGTCGAA+CGG 0.594236 6_1:+97129700 None:intergenic
CCATTCCTTACATGTGATGG+TGG 0.603991 6_1:-97127823 Msa0900900:five_prime_UTR
TGGTTGTCTCATCACCCTCA+AGG 0.606403 6_1:+97119744 None:intergenic
CAAAGCCATATAGAGGTGGA+AGG 0.610830 6_1:-97118304 Msa0900900:three_prime_UTR
TTCCTTACATGTGATGGTGG+CGG 0.615743 6_1:-97127820 Msa0900900:five_prime_UTR
CAGTAGGTGAATCTAGGCGA+GGG 0.620624 6_1:+97119718 None:intergenic
GAGAATGAATGTATGGCTGT+AGG 0.622146 6_1:+97129797 None:intergenic
GTGATTGTGTTCTTAAATGG+AGG 0.624650 6_1:+97129692 None:intergenic
GTCTCTCATCATAACTCACT+AGG 0.626110 6_1:+97125221 None:intergenic
TTTACCATCTCGATCCTCGG+TGG 0.626398 6_1:+97129610 None:intergenic
AATGGACGGATGGCTACGAT+GGG 0.631048 6_1:-97123546 Msa0900900:CDS
CTAGAAGCAACAGTTCTGCA+AGG 0.631238 6_1:-97119281 Msa0900900:three_prime_UTR
CTAGAAGCAACAGTTCTGCA+AGG 0.631238 6_1:-97127088 Msa0900900:five_prime_UTR
TCTACAAAACTCACATGCAG+AGG 0.631811 6_1:+97129318 None:intergenic
GAAGAAGCATTAGTTCAGCA+AGG 0.633978 6_1:-97124737 Msa0900900:five_prime_UTR
TTGAAGAAGCATATGACCGA+AGG 0.637274 6_1:-97125645 Msa0900900:five_prime_UTR
GTTAGACATGATGAAAACAA+AGG 0.640821 6_1:-97119250 Msa0900900:three_prime_UTR
GTTAGACATGATGAAAACAA+AGG 0.640821 6_1:-97127057 Msa0900900:five_prime_UTR
ATGACAAAGCCATATAGAGG+TGG 0.642666 6_1:-97118308 Msa0900900:three_prime_UTR
ACAGTAGGTGAATCTAGGCG+AGG 0.644049 6_1:+97119717 None:intergenic
GTGACGTTGTATCAAATGGA+CGG 0.646762 6_1:-97123560 Msa0900900:CDS
TCTAGATGAGAGAAGAACAA+TGG 0.651972 6_1:+97129667 None:intergenic
GATGGTGCCTGAAACATCAA+CGG 0.665675 6_1:-97120409 Msa0900900:CDS
ACAGTATGTGAATCTAGCTG+GGG 0.667908 6_1:+97125189 None:intergenic
AACGCCACCGAGGATCGAGA+TGG 0.668682 6_1:-97129614 Msa0900900:intron
AGATGAGAGAAGAACAATGG+TGG 0.678134 6_1:+97129670 None:intergenic
CAGTATGTGAATCTAGCTGG+GGG 0.695680 6_1:+97125190 None:intergenic
ACAGACATGCAACGCCACCG+AGG 0.718809 6_1:-97129624 Msa0900900:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATATTTTTTATAAAT+AGG - chr6_1:97125560-97125579 Msa0900900:five_prime_UTR 0.0%
!!! TAAAAATATTATTTAAAATT+TGG + chr6_1:97128428-97128447 None:intergenic 0.0%
!!! TTTAAATAATATTTTTAATT+AGG - chr6_1:97128431-97128450 Msa0900900:intron 0.0%
!! ATGAAAAATACATATAAATA+TGG + chr6_1:97118877-97118896 None:intergenic 10.0%
!!! TTTTTTTTAATTTTTATTCC+TGG - chr6_1:97119212-97119231 Msa0900900:intron 10.0%
!! AGAAGAAAATTAAAAATATA+TGG - chr6_1:97119661-97119680 Msa0900900:intron 10.0%
!! ATTAAATTAGTAATTGTATT+CGG + chr6_1:97119884-97119903 None:intergenic 10.0%
!!! AATTTAACAACATTATTTTA+AGG - chr6_1:97120327-97120346 Msa0900900:intron 10.0%
!! AAGAATAAACTTAATTAAAA+TGG + chr6_1:97122796-97122815 None:intergenic 10.0%
!!! TAGAAATATTATTTAAAATC+AGG + chr6_1:97122957-97122976 None:intergenic 10.0%
!! AAACACATAATTTAAAAAAA+GGG + chr6_1:97123756-97123775 None:intergenic 10.0%
!! TGATAAATAGTTAAAAAAAA+TGG + chr6_1:97124912-97124931 None:intergenic 10.0%
!! AAAATAAATTAATCGATAAT+AGG - chr6_1:97124940-97124959 Msa0900900:intron 10.0%
!!! ACAAAATTTTCAATAAAATA+AGG - chr6_1:97125616-97125635 Msa0900900:five_prime_UTR 10.0%
!!! CAAATTTAGAATTAAAAAAA+TGG + chr6_1:97126412-97126431 None:intergenic 10.0%
!! ATAAACAAAATATAAACTAA+TGG + chr6_1:97126460-97126479 None:intergenic 10.0%
!!! TGTTATTATTATTATTTTCT+TGG - chr6_1:97126521-97126540 Msa0900900:intron 10.0%
!!! GTTATTATTATTATTTTCTT+GGG - chr6_1:97126522-97126541 Msa0900900:intron 10.0%
!! GTTAATATAATTTAACAAAA+AGG + chr6_1:97127178-97127197 None:intergenic 10.0%
!!! GTTTATCATTTTTTTTTTAT+TGG - chr6_1:97127311-97127330 Msa0900900:intron 10.0%
!!! TGTCATTTTATAATAAAAAT+TGG - chr6_1:97129105-97129124 Msa0900900:intron 10.0%
!!! TGTTTAAAATAATGTTTTTT+TGG - chr6_1:97129746-97129765 Msa0900900:five_prime_UTR 10.0%
!!! CAATTTTTTTTATCTGTATT+TGG - chr6_1:97118399-97118418 Msa0900900:intron 15.0%
!!! ATTTATATATTTTCGAGTTA+GGG - chr6_1:97118463-97118482 Msa0900900:intron 15.0%
!! TTGATCTATGAAATTTAAAT+TGG - chr6_1:97118692-97118711 Msa0900900:intron 15.0%
!! TTCATAAATTTGTATTAATG+TGG - chr6_1:97118834-97118853 Msa0900900:intron 15.0%
!!! AATACTAACATTTTTAGTAA+AGG + chr6_1:97118987-97119006 None:intergenic 15.0%
!!! ATACTTAATTTGTTGTTTTA+TGG - chr6_1:97119337-97119356 Msa0900900:intron 15.0%
!! GGTTATATTTATTACTAATA+GGG + chr6_1:97119863-97119882 None:intergenic 15.0%
!!! TAAAAACATCACATTTTAAA+TGG + chr6_1:97120281-97120300 None:intergenic 15.0%
!! ATTGAAATTATGTTTCAAAT+TGG - chr6_1:97120491-97120510 Msa0900900:intron 15.0%
!! TCATTAAGATATTATAACAA+GGG - chr6_1:97121204-97121223 Msa0900900:intron 15.0%
!!! TAAAAAATCATGTCAATTTT+AGG + chr6_1:97121802-97121821 None:intergenic 15.0%
!!! TTAGATTGTTTTTAATCTTT+TGG - chr6_1:97122455-97122474 Msa0900900:intron 15.0%
!!! ATATGAATCAATTTGTTTTT+AGG + chr6_1:97122485-97122504 None:intergenic 15.0%
!! ATAAACTTAATTAAAATGGA+CGG + chr6_1:97122792-97122811 None:intergenic 15.0%
!!! AAAACGTAATATTGTTTTAT+TGG + chr6_1:97123505-97123524 None:intergenic 15.0%
!! GAAACACATAATTTAAAAAA+AGG + chr6_1:97123757-97123776 None:intergenic 15.0%
!!! TAAAAACAACAGTTTTTATT+TGG - chr6_1:97123863-97123882 Msa0900900:intron 15.0%
!! TTCTTTATAATAAGTATCAT+TGG - chr6_1:97124100-97124119 Msa0900900:intron 15.0%
!! ATTAATAGATATAAATGAGA+GGG + chr6_1:97124820-97124839 None:intergenic 15.0%
!! ATTAATAGTTATACCAATTT+AGG + chr6_1:97124876-97124895 None:intergenic 15.0%
!!! TGAAAATAATTTGTAGTAAA+TGG + chr6_1:97125355-97125374 None:intergenic 15.0%
!!! TTTACTACAAATTATTTTCA+AGG - chr6_1:97125355-97125374 Msa0900900:intron 15.0%
!! AATTATTATGAGTAAAAATG+TGG + chr6_1:97125642-97125661 None:intergenic 15.0%
!!! CAGTTAATATTTTTATTTGT+CGG + chr6_1:97126133-97126152 None:intergenic 15.0%
!!! ATTAATCACAATTTTTTTTC+TGG - chr6_1:97126351-97126370 Msa0900900:intron 15.0%
!! ATTATTATTTCCATTTGAAT+CGG + chr6_1:97126773-97126792 None:intergenic 15.0%
!!! GTTTTAATTCTTATCAAATT+TGG + chr6_1:97126868-97126887 None:intergenic 15.0%
!! TGATAAGAATTAAAACTTTA+AGG - chr6_1:97126872-97126891 Msa0900900:intron 15.0%
!! GTTAAATTATATTAACATCT+TGG - chr6_1:97127182-97127201 Msa0900900:intron 15.0%
!!! TATCATTTTTTTTTTATTGG+TGG - chr6_1:97127314-97127333 Msa0900900:intron 15.0%
!! TTTGTTTGTTTATTTGATAT+TGG + chr6_1:97127879-97127898 None:intergenic 15.0%
!!! ATGTTTTTCATTTAGAAATT+CGG + chr6_1:97128745-97128764 None:intergenic 15.0%
!!! TTTGAAGTAAAAAAACATAT+GGG + chr6_1:97128908-97128927 None:intergenic 15.0%
!!! TTTTGAAGTAAAAAAACATA+TGG + chr6_1:97128909-97128928 None:intergenic 15.0%
!! AGAATTAACATACATTAAAA+TGG - chr6_1:97129368-97129387 Msa0900900:five_prime_UTR 15.0%
!! ATATAAAATGTACATCTAAT+TGG + chr6_1:97129812-97129831 None:intergenic 15.0%
!!! TTTTTTTATCTGTATTTGGA+TGG - chr6_1:97118403-97118422 Msa0900900:intron 20.0%
!!! TTTTTTATCTGTATTTGGAT+GGG - chr6_1:97118404-97118423 Msa0900900:intron 20.0%
!! ACTCGAAAATATATAAATGT+TGG + chr6_1:97118461-97118480 None:intergenic 20.0%
!!! CATTTATATATTTTCGAGTT+AGG - chr6_1:97118462-97118481 Msa0900900:intron 20.0%
!!! AATGTCTCAATTTTTAGTAA+AGG - chr6_1:97118804-97118823 Msa0900900:intron 20.0%
!! TAAATTTGTATTAATGTGGT+TGG - chr6_1:97118838-97118857 Msa0900900:intron 20.0%
!!! TATTTTCATTTGTATCTCTT+TGG - chr6_1:97119274-97119293 Msa0900900:three_prime_UTR 20.0%
!!! TTTTATGGACTAATAGAAAA+AGG - chr6_1:97119352-97119371 Msa0900900:intron 20.0%
!!! TTTATGGACTAATAGAAAAA+GGG - chr6_1:97119353-97119372 Msa0900900:intron 20.0%
!! AATATAGAGCTACATATATA+TGG - chr6_1:97119428-97119447 Msa0900900:intron 20.0%
!!! CATTAATTTGATTTTTGAAG+TGG + chr6_1:97119495-97119514 None:intergenic 20.0%
!!! CTGCTATTTCATATTATTAT+TGG + chr6_1:97119764-97119783 None:intergenic 20.0%
!! CGGTTATATTTATTACTAAT+AGG + chr6_1:97119864-97119883 None:intergenic 20.0%
!! TTTGTTCACAAAATTGAATT+TGG - chr6_1:97119946-97119965 Msa0900900:intron 20.0%
!!! ACATAATTTCAATTTTCATC+AGG + chr6_1:97120484-97120503 None:intergenic 20.0%
!! GAATAGTATTATTCATCATT+TGG - chr6_1:97120551-97120570 Msa0900900:intron 20.0%
!!! ACATTTTAGAAGTATATACA+TGG + chr6_1:97120619-97120638 None:intergenic 20.0%
!! ATAGTTTATTCTATGACAAT+TGG + chr6_1:97120664-97120683 None:intergenic 20.0%
!! AGATACAATAAAACAGTAAA+AGG + chr6_1:97120730-97120749 None:intergenic 20.0%
!! TTATCTAATAAGAGAAAAAG+AGG + chr6_1:97120944-97120963 None:intergenic 20.0%
!!! TTTCTCAATTCTTTTAGAAA+GGG + chr6_1:97120977-97120996 None:intergenic 20.0%
!! AATATGTTTAAAGAATGCAT+AGG - chr6_1:97121020-97121039 Msa0900900:intron 20.0%
!! ATATGTTTAAAGAATGCATA+GGG - chr6_1:97121021-97121040 Msa0900900:intron 20.0%
!! TATGGAAAAAAGACTTTATT+AGG + chr6_1:97121056-97121075 None:intergenic 20.0%
!!! CTTGTTATAATATCTTAATG+AGG + chr6_1:97121205-97121224 None:intergenic 20.0%
!! CTCATTAAGATATTATAACA+AGG - chr6_1:97121203-97121222 Msa0900900:intron 20.0%
!! TATGAATACCATTAAATGAT+AGG - chr6_1:97121265-97121284 Msa0900900:intron 20.0%
!!! CTTTTTAACCTATCATTTAA+TGG + chr6_1:97121276-97121295 None:intergenic 20.0%
!!! AGTTTTAAACCTAATTTCTT+GGG - chr6_1:97121428-97121447 Msa0900900:intron 20.0%
!!! AAAGATATGCATAAGTTTTA+GGG + chr6_1:97121841-97121860 None:intergenic 20.0%
!!! TGCATAAGTATTTTTTGTTA+TGG + chr6_1:97121864-97121883 None:intergenic 20.0%
!! AATACTTATGCATATCTTAT+TGG - chr6_1:97121872-97121891 Msa0900900:intron 20.0%
!! TTATAAATCAAAGTAGAAGA+TGG + chr6_1:97121967-97121986 None:intergenic 20.0%
!! TAAAAATAATAGTACCTTCA+TGG + chr6_1:97122433-97122452 None:intergenic 20.0%
!! TTGAGAGTTTATTCTAAATT+AGG - chr6_1:97122611-97122630 Msa0900900:intron 20.0%
!! AAAACAGTATTCACTAAATA+AGG + chr6_1:97123078-97123097 None:intergenic 20.0%
!! AATATATTGAAAGAATGCAT+AGG - chr6_1:97123359-97123378 Msa0900900:intron 20.0%
!! ATATATTGAAAGAATGCATA+GGG - chr6_1:97123360-97123379 Msa0900900:intron 20.0%
!! AAAAAGACTTTAATAGGAAA+CGG + chr6_1:97123392-97123411 None:intergenic 20.0%
!! TAAGTTATAACATCTCAATA+AGG + chr6_1:97123548-97123567 None:intergenic 20.0%
!!! ATACACTTTTAAGTGATAAT+GGG - chr6_1:97123784-97123803 Msa0900900:intron 20.0%
!! ATATCTTATACTATTCGAAA+AGG + chr6_1:97124148-97124167 None:intergenic 20.0%
!! AAACTATCCTTCATATAAAA+GGG + chr6_1:97124227-97124246 None:intergenic 20.0%
!! AAAACTATCCTTCATATAAA+AGG + chr6_1:97124228-97124247 None:intergenic 20.0%
!! AAACAAGTCTATATACAATA+AGG + chr6_1:97124715-97124734 None:intergenic 20.0%
!!! TTATTGTATATAGACTTGTT+TGG - chr6_1:97124714-97124733 Msa0900900:exon 20.0%
!!! TATTGTATATAGACTTGTTT+GGG - chr6_1:97124715-97124734 Msa0900900:exon 20.0%
!! GATTAATAGATATAAATGAG+AGG + chr6_1:97124821-97124840 None:intergenic 20.0%
!!! TTTTTTGATATCTCAAAGAT+TGG + chr6_1:97125005-97125024 None:intergenic 20.0%
!!! GAATATTTTAAAATTGTCCA+TGG + chr6_1:97125063-97125082 None:intergenic 20.0%
!!! ATTTATGTTGCTATTTGAAA+AGG - chr6_1:97125388-97125407 Msa0900900:intron 20.0%
!!! TTATCCTTGTGTATTTTTTT+AGG - chr6_1:97125667-97125686 Msa0900900:five_prime_UTR 20.0%
!!! TATCCTTGTGTATTTTTTTA+GGG - chr6_1:97125668-97125687 Msa0900900:five_prime_UTR 20.0%
!! AAAAAAGATAGAAAAGAGAA+GGG + chr6_1:97125857-97125876 None:intergenic 20.0%
!! AAAAAAAGATAGAAAAGAGA+AGG + chr6_1:97125858-97125877 None:intergenic 20.0%
!!! TAAAGATAAGAGTTTTATAG+AGG + chr6_1:97125988-97126007 None:intergenic 20.0%
!! CGACAAATAAAAATATTAAC+TGG - chr6_1:97126131-97126150 Msa0900900:intron 20.0%
!! AATGTACATATAAAAGAAGA+TGG + chr6_1:97126313-97126332 None:intergenic 20.0%
!!! ATATTTGTGATTTAGCATTT+TGG - chr6_1:97126570-97126589 Msa0900900:intron 20.0%
!! AAAACAAAATTAACACTCAA+AGG + chr6_1:97126700-97126719 None:intergenic 20.0%
!! TTATTATTTCCATTTGAATC+GGG + chr6_1:97126772-97126791 None:intergenic 20.0%
!! ACATAATAATCAAATGCATA+AGG + chr6_1:97126903-97126922 None:intergenic 20.0%
!! TTATGCATTTGATTATTATG+TGG - chr6_1:97126902-97126921 Msa0900900:intron 20.0%
!!! CATTTTTGGATATAATTTAC+TGG - chr6_1:97127046-97127065 Msa0900900:intron 20.0%
!! TGGATTACTTAATTATGATT+TGG - chr6_1:97127655-97127674 Msa0900900:intron 20.0%
!! TTTAGTTATTTGTCAACAAA+GGG + chr6_1:97127914-97127933 None:intergenic 20.0%
!!! ATTAGTCTATGAGTATAATT+GGG + chr6_1:97128059-97128078 None:intergenic 20.0%
!!! AATTAGTCTATGAGTATAAT+TGG + chr6_1:97128060-97128079 None:intergenic 20.0%
!! TATACTCATAGACTAATTTA+TGG - chr6_1:97128062-97128081 Msa0900900:intron 20.0%
!! AGATACAATAAAACAGTAAA+AGG + chr6_1:97120730-97120749 None:intergenic 20.0%
!! ATATTATTAGCAATCACATT+AGG + chr6_1:97128773-97128792 None:intergenic 20.0%
!!! GCTAATAATATGACAAATTT+TGG - chr6_1:97128782-97128801 Msa0900900:intron 20.0%
!! AGAGTTAAAAGATTAAATTC+AGG + chr6_1:97128932-97128951 None:intergenic 20.0%
!!! TACATGTAATTTAGAGTTAA+AGG + chr6_1:97128979-97128998 None:intergenic 20.0%
!!! TAAATTACATGTACCTTTTT+TGG - chr6_1:97128986-97129005 Msa0900900:intron 20.0%
!!! GAAAGTAACATATTTTCTAA+GGG + chr6_1:97129063-97129082 None:intergenic 20.0%
!!! AGAAAGTAACATATTTTCTA+AGG + chr6_1:97129064-97129083 None:intergenic 20.0%
!!! TGTTACTTTCTTTTTAAATG+TGG - chr6_1:97129073-97129092 Msa0900900:intron 20.0%
!!! AATATTTTTTGTATTCAGCT+GGG + chr6_1:97129219-97129238 None:intergenic 20.0%
!!! TAATATTTTTTGTATTCAGC+TGG + chr6_1:97129220-97129239 None:intergenic 20.0%
!! AAAATATTATAGATTGCTTC+AGG - chr6_1:97129231-97129250 Msa0900900:intron 20.0%
!!! TTCTAATATACATCCTTTTT+AGG + chr6_1:97129352-97129371 None:intergenic 20.0%
!! TAATATACATCCTTCTAATT+AGG + chr6_1:97129395-97129414 None:intergenic 20.0%
!! GGATGTATATTAGAAATATA+AGG - chr6_1:97129403-97129422 Msa0900900:intron 20.0%
! GTTAAATGAGAATGAATGTA+TGG + chr6_1:97118160-97118179 None:intergenic 25.0%
!! TTTTGAACATCTATGTATCT+TGG - chr6_1:97118662-97118681 Msa0900900:intron 25.0%
! AATCTTAAGTGTATGCTAAA+TGG - chr6_1:97118726-97118745 Msa0900900:intron 25.0%
! ATCTTAAGTGTATGCTAAAT+GGG - chr6_1:97118727-97118746 Msa0900900:intron 25.0%
! TACTAAAAATTGAGACATTG+AGG + chr6_1:97118803-97118822 None:intergenic 25.0%
! ATTAGATCAGTAAATTGACA+AGG + chr6_1:97119021-97119040 None:intergenic 25.0%
!!! GAATTATTTTATAGCAGTAG+CGG + chr6_1:97119064-97119083 None:intergenic 25.0%
! TATCACGATAAAGTATGAAA+TGG + chr6_1:97119126-97119145 None:intergenic 25.0%
! ATTTGACAGAAAAATAAAGC+AGG - chr6_1:97119397-97119416 Msa0900900:intron 25.0%
!! ATGTAGCTCTATATTTAACA+TGG + chr6_1:97119423-97119442 None:intergenic 25.0%
! ATATGGAAATAATTCTGTCA+TGG - chr6_1:97119445-97119464 Msa0900900:intron 25.0%
!! TCTACATCATTTGTATTGAT+TGG + chr6_1:97119644-97119663 None:intergenic 25.0%
!!! TTAAAGCGAGTTGATTTAAA+TGG + chr6_1:97119833-97119852 None:intergenic 25.0%
! ATTTAATGACCTAACATTAG+TGG - chr6_1:97119897-97119916 Msa0900900:intron 25.0%
!!! TATGTGAAGTTATTTTACGA+TGG - chr6_1:97120363-97120382 Msa0900900:CDS 25.0%
! AACAATGAGGTCTTAAAAAT+AGG + chr6_1:97120393-97120412 None:intergenic 25.0%
! AATAAAAGTGATGAACAATG+AGG + chr6_1:97120406-97120425 None:intergenic 25.0%
!!! ACTTTTATTTGCTACATGTT+GGG - chr6_1:97120417-97120436 Msa0900900:CDS 25.0%
!!! ACATTTTAGAAGTATAGACT+TGG + chr6_1:97120448-97120467 None:intergenic 25.0%
! TATTCGTATCTAGATTTCAT+CGG + chr6_1:97120536-97120555 None:intergenic 25.0%
! TAGCATTTACAAATGATGTT+GGG + chr6_1:97120582-97120601 None:intergenic 25.0%
! ATTTGTAAATGCTACATGTT+GGG - chr6_1:97120588-97120607 Msa0900900:intron 25.0%
!! GTTTGTTTGTTTGTTAGTAT+TGG - chr6_1:97120813-97120832 Msa0900900:intron 25.0%
!!! AAAGAGGTATTAGATAGAAA+AGG + chr6_1:97120928-97120947 None:intergenic 25.0%
!!! CTTTCTCAATTCTTTTAGAA+AGG + chr6_1:97120978-97120997 None:intergenic 25.0%
!!! CTTCGAAATTTTAAAAAGCT+AGG - chr6_1:97121090-97121109 Msa0900900:intron 25.0%
! GTTATAATATCTTAATGAGG+AGG + chr6_1:97121202-97121221 None:intergenic 25.0%
!!! GCAATTGTTGTTTTTAGTTT+TGG - chr6_1:97121302-97121321 Msa0900900:intron 25.0%
! AATAAATTCTAATGCAAAGC+TGG + chr6_1:97121350-97121369 None:intergenic 25.0%
!! CAAGAAATTAGGTTTAAAAC+TGG + chr6_1:97121429-97121448 None:intergenic 25.0%
!!! CAGTTTTAAACCTAATTTCT+TGG - chr6_1:97121427-97121446 Msa0900900:intron 25.0%
! AAATTCAAACCCAAGAAATT+AGG + chr6_1:97121440-97121459 None:intergenic 25.0%
!! TTCTGCTATACATCATTTTA+TGG + chr6_1:97121491-97121510 None:intergenic 25.0%
! ATAAAGAGGTTAATCTGTAT+TGG - chr6_1:97121510-97121529 Msa0900900:intron 25.0%
! ATATTTCATCAGTTGTATTC+TGG + chr6_1:97121687-97121706 None:intergenic 25.0%
! AACTGATGAAATATGATACT+TGG - chr6_1:97121693-97121712 Msa0900900:intron 25.0%
!! GAAAGATATGCATAAGTTTT+AGG + chr6_1:97121842-97121861 None:intergenic 25.0%
! AAGCAAGATATACAAGAAAT+AGG + chr6_1:97122008-97122027 None:intergenic 25.0%
!!! ATAACTTTCAAGTATTGATC+TGG - chr6_1:97122122-97122141 Msa0900900:intron 25.0%
! AATACTTCAAAGAGTTCTTT+AGG + chr6_1:97122160-97122179 None:intergenic 25.0%
! AATTCATCATCAAAACCATT+TGG - chr6_1:97122257-97122276 Msa0900900:intron 25.0%
!! GGAACTTTTTATATTAGTGT+TGG + chr6_1:97122936-97122955 None:intergenic 25.0%
! TCTTATGACAATTTGCATAA+GGG + chr6_1:97123004-97123023 None:intergenic 25.0%
! ATCTTATGACAATTTGCATA+AGG + chr6_1:97123005-97123024 None:intergenic 25.0%
!!! TTTTCTTTGTTTGTTAGCAA+TGG - chr6_1:97123163-97123182 Msa0900900:intron 25.0%
!! TTTCTTTGTTTGTTAGCAAT+GGG - chr6_1:97123164-97123183 Msa0900900:intron 25.0%
! TATATTGAAAGAATGCATAG+GGG - chr6_1:97123361-97123380 Msa0900900:intron 25.0%
! ATGTGGAAAAAGACTTTAAT+AGG + chr6_1:97123398-97123417 None:intergenic 25.0%
! TATGTTGTATAGTAAGTATG+TGG + chr6_1:97123415-97123434 None:intergenic 25.0%
!!! CATACACTTTTAAGTGATAA+TGG - chr6_1:97123783-97123802 Msa0900900:intron 25.0%
!!! ACGAAATAAACATGTTTTGA+AGG - chr6_1:97123900-97123919 Msa0900900:intron 25.0%
! ATCTACATATAGCATAGTAA+TGG - chr6_1:97123972-97123991 Msa0900900:intron 25.0%
!! TGATCTTTGTATTTAGTTCA+AGG - chr6_1:97124073-97124092 Msa0900900:intron 25.0%
! TCACCAAATTTATCAAGATT+TGG - chr6_1:97124174-97124193 Msa0900900:intron 25.0%
! CACCAAATTTATCAAGATTT+GGG - chr6_1:97124175-97124194 Msa0900900:intron 25.0%
! TACCCAAATCTTGATAAATT+TGG + chr6_1:97124180-97124199 None:intergenic 25.0%
! CCAAGAAGAATAGATAATAA+CGG + chr6_1:97124274-97124293 None:intergenic 25.0%
! CGTTATTATCTATTCTTCTT+GGG - chr6_1:97124272-97124291 Msa0900900:intron 25.0%
! GTTATTATCTATTCTTCTTG+GGG - chr6_1:97124273-97124292 Msa0900900:intron 25.0%
! TGAAATATCACATCAAATTC+TGG + chr6_1:97124367-97124386 None:intergenic 25.0%
! GGTCAAACATATGATTTATT+AGG + chr6_1:97124482-97124501 None:intergenic 25.0%
!!! CTCTAAGTTTGCTATATATA+TGG + chr6_1:97124503-97124522 None:intergenic 25.0%
!!! AATTGCCATTTATCGTATTT+TGG + chr6_1:97124563-97124582 None:intergenic 25.0%
! TCTATATACAATAAGGAGAA+TGG + chr6_1:97124708-97124727 None:intergenic 25.0%
! TGATACTTCAAAAATCTTGA+TGG - chr6_1:97125035-97125054 Msa0900900:intron 25.0%
! TGAGTGCATATAAATCTAAT+GGG + chr6_1:97125171-97125190 None:intergenic 25.0%
! TTGAGTGCATATAAATCTAA+TGG + chr6_1:97125172-97125191 None:intergenic 25.0%
! CTACTTAGAAATAACTGTAT+TGG + chr6_1:97125435-97125454 None:intergenic 25.0%
!!! ATCCTTGTGTATTTTTTTAG+GGG - chr6_1:97125669-97125688 Msa0900900:five_prime_UTR 25.0%
! AATGACATAAAGATAAGCAT+TGG + chr6_1:97125775-97125794 None:intergenic 25.0%
! TCCATAGTGTTAATATTATG+TGG - chr6_1:97125796-97125815 Msa0900900:intron 25.0%
! ACCACATAATATTAACACTA+TGG + chr6_1:97125800-97125819 None:intergenic 25.0%
!!! GGTTTTATTTTAGTATGAAG+CGG + chr6_1:97125943-97125962 None:intergenic 25.0%
!!! ATTTTTTAGACTGTCATTTC+TGG - chr6_1:97126029-97126048 Msa0900900:intron 25.0%
!! TTTTATTGTGAATATCAAGG+AGG + chr6_1:97126110-97126129 None:intergenic 25.0%
!!! GTTCTTTTTCACTATTTTTG+AGG - chr6_1:97126202-97126221 Msa0900900:intron 25.0%
!!! CTATATTTTTACAAGAAACG+AGG + chr6_1:97126281-97126300 None:intergenic 25.0%
! ATGCTAAATCACAAATATAG+AGG + chr6_1:97126568-97126587 None:intergenic 25.0%
! TTCTAATGACATGTTAATGA+AGG - chr6_1:97126662-97126681 Msa0900900:intron 25.0%
! AAGATGATAATCTGATCTAA+AGG - chr6_1:97126793-97126812 Msa0900900:intron 25.0%
!! GTAAATCAACGATTTTTGAA+TGG - chr6_1:97126963-97126982 Msa0900900:intron 25.0%
!! GTTTAGAAAAGTTGCATTTT+TGG - chr6_1:97127032-97127051 Msa0900900:intron 25.0%
! TTCAAACATACTTTATGACT+TGG - chr6_1:97127264-97127283 Msa0900900:intron 25.0%
!! AAAATGTTAATAGAAAGTGC+AGG + chr6_1:97127430-97127449 None:intergenic 25.0%
!! CAATTTCTAACTGATTCAAA+TGG - chr6_1:97127605-97127624 Msa0900900:intron 25.0%
! CTTTAGTTATTTGTCAACAA+AGG + chr6_1:97127915-97127934 None:intergenic 25.0%
! GCGAAGAAACATAATTAAAA+TGG + chr6_1:97128270-97128289 None:intergenic 25.0%
!! ATGACAATTTTTGTATCATC+TGG - chr6_1:97128381-97128400 Msa0900900:intron 25.0%
! ATAGCTTATTCTATGACAAT+TGG + chr6_1:97128483-97128502 None:intergenic 25.0%
! TTTAGAAATTCGGTAGAAAA+AGG + chr6_1:97128735-97128754 None:intergenic 25.0%
!!! TATGACAAATTTTGGTTTCT+CGG - chr6_1:97128790-97128809 Msa0900900:intron 25.0%
! TTCAAAAAGATTAAGACTTC+AGG + chr6_1:97128884-97128903 None:intergenic 25.0%
!!! GTTCATCAAAAAAGTTTTGA+AGG + chr6_1:97129293-97129312 None:intergenic 25.0%
! TTAAAATGGTCCTAATTAGA+AGG - chr6_1:97129382-97129401 Msa0900900:five_prime_UTR 25.0%
!!! AATGTTTTTTTGGCCATATA+AGG - chr6_1:97129756-97129775 Msa0900900:five_prime_UTR 25.0%
!! AAAGAAAAAGGTATCCGAAA+AGG + chr6_1:97118122-97118141 None:intergenic 30.0%
TAGGAAGAAGAGAAAGAAAA+AGG + chr6_1:97118134-97118153 None:intergenic 30.0%
GTTGATGTTTCTTCAAAAGA+CGG - chr6_1:97118546-97118565 Msa0900900:intron 30.0%
TAAAAATTGAGACATTGAGG+TGG + chr6_1:97118800-97118819 None:intergenic 30.0%
TAATGTGGTTGGATATGTAT+TGG - chr6_1:97118849-97118868 Msa0900900:intron 30.0%
! GTAAATTGACAAGGTTAGTT+AGG + chr6_1:97119012-97119031 None:intergenic 30.0%
GATATCAAACATAATACTCC+AGG + chr6_1:97119169-97119188 None:intergenic 30.0%
!!! TAGTTTTGACAAAATACTCC+AGG + chr6_1:97119233-97119252 None:intergenic 30.0%
ACAAATTGACTGTGTCAAAT+TGG - chr6_1:97119578-97119597 Msa0900900:intron 30.0%
ATTGGTCGAGAATAAGATTA+TGG - chr6_1:97119596-97119615 Msa0900900:intron 30.0%
TTGGTCGAGAATAAGATTAT+GGG - chr6_1:97119597-97119616 Msa0900900:intron 30.0%
GGCAAATAGTAACATATCAA+AGG - chr6_1:97119618-97119637 Msa0900900:intron 30.0%
ATTGGTATTGCCTAAAATTG+CGG + chr6_1:97119746-97119765 None:intergenic 30.0%
ATAGATTGCAATTTGCAAGT+CGG + chr6_1:97119789-97119808 None:intergenic 30.0%
!! GTTCACAATCAACTGATTTT+GGG + chr6_1:97120016-97120035 None:intergenic 30.0%
!! TGTTCACAATCAACTGATTT+TGG + chr6_1:97120017-97120036 None:intergenic 30.0%
GTTGATTGTGAACATGAATA+TGG - chr6_1:97120023-97120042 Msa0900900:intron 30.0%
TTTCAATTCCATACTGATCA+AGG - chr6_1:97120100-97120119 Msa0900900:intron 30.0%
TAAATTGATAGAGACTGTCA+TGG + chr6_1:97120313-97120332 None:intergenic 30.0%
!! CACTTTTATTTGCTACATGT+TGG - chr6_1:97120416-97120435 Msa0900900:CDS 30.0%
GTAGCATTTACAAATGATGT+TGG + chr6_1:97120583-97120602 None:intergenic 30.0%
CATTTGTAAATGCTACATGT+TGG - chr6_1:97120587-97120606 Msa0900900:intron 30.0%
TTCTATGACAATTGGCATAA+GGG + chr6_1:97120656-97120675 None:intergenic 30.0%
ATTCTATGACAATTGGCATA+AGG + chr6_1:97120657-97120676 None:intergenic 30.0%
CTACTCATCAAGCTTAATAA+AGG + chr6_1:97120687-97120706 None:intergenic 30.0%
! TTGTTTGTTAGTATTGGATG+TGG - chr6_1:97120819-97120838 Msa0900900:intron 30.0%
GTTAGACATGATGAAAACAA+AGG - chr6_1:97120890-97120909 Msa0900900:intron 30.0%
!! TCAATTCTTTTAGAAAGGGT+TGG + chr6_1:97120973-97120992 None:intergenic 30.0%
GAAGTTGTATAGCAAGTATA+TGG + chr6_1:97121074-97121093 None:intergenic 30.0%
TGATGTATAGCAGAATAAAG+AGG - chr6_1:97121496-97121515 Msa0900900:intron 30.0%
GTTAATCTGTATTGGATAGT+TGG - chr6_1:97121518-97121537 Msa0900900:intron 30.0%
AGTTACATTTGAGCATTCAT+AGG - chr6_1:97121748-97121767 Msa0900900:intron 30.0%
AACTAACAGACAGAACATAT+TGG - chr6_1:97122353-97122372 Msa0900900:intron 30.0%
ACATATTGGACTTCAATTCT+TGG - chr6_1:97122367-97122386 Msa0900900:intron 30.0%
!!! GGTTTCAATTTTTAGTGAGT+TGG + chr6_1:97122518-97122537 None:intergenic 30.0%
!!! CTTGGTTGTTTTTTCACTAT+TGG + chr6_1:97122539-97122558 None:intergenic 30.0%
TGTAAGCAATATAGACTACT+TGG + chr6_1:97122557-97122576 None:intergenic 30.0%
CACATCTATTAGAAATGCTT+AGG + chr6_1:97122849-97122868 None:intergenic 30.0%
AGCATTTCTAATAGATGTGA+TGG - chr6_1:97122850-97122869 Msa0900900:intron 30.0%
GCATTTCTAATAGATGTGAT+GGG - chr6_1:97122851-97122870 Msa0900900:intron 30.0%
! TTGACAACTTTTGTATCTTC+TGG - chr6_1:97122910-97122929 Msa0900900:intron 30.0%
TTGTCTAACAACAGAAAAAG+AGG + chr6_1:97123294-97123313 None:intergenic 30.0%
GTTATAACATCTCAATAAGG+AGG + chr6_1:97123545-97123564 None:intergenic 30.0%
TTTACCTTTGACTATGTGAT+AGG - chr6_1:97123682-97123701 Msa0900900:intron 30.0%
AATTTAAAAAAAGGGCAACC+TGG + chr6_1:97123748-97123767 None:intergenic 30.0%
! CACTTAAAAGTGTATGAGAA+AGG + chr6_1:97123779-97123798 None:intergenic 30.0%
TACAGCATCAACATTGTATT+TGG - chr6_1:97123814-97123833 Msa0900900:intron 30.0%
ACAGCATCAACATTGTATTT+GGG - chr6_1:97123815-97123834 Msa0900900:intron 30.0%
ACATATAGCATAGTAATGGT+AGG - chr6_1:97123976-97123995 Msa0900900:intron 30.0%
CCGTTATTATCTATTCTTCT+TGG - chr6_1:97124271-97124290 Msa0900900:intron 30.0%
GACTAATTATCAAGTAACCT+AGG + chr6_1:97124318-97124337 None:intergenic 30.0%
AGTAGCCAAAATACGATAAA+TGG - chr6_1:97124555-97124574 Msa0900900:intron 30.0%
GGGAAATTAAAATCACTTCA+TGG - chr6_1:97124655-97124674 Msa0900900:intron 30.0%
CTTCATGGATTTACTAATCT+TGG - chr6_1:97124670-97124689 Msa0900900:intron 30.0%
TATACAATAAGGAGAATGGA+GGG + chr6_1:97124704-97124723 None:intergenic 30.0%
ATATACAATAAGGAGAATGG+AGG + chr6_1:97124705-97124724 None:intergenic 30.0%
! GACTTGTTTGGGAAATTTAA+AGG - chr6_1:97124726-97124745 Msa0900900:five_prime_UTR 30.0%
TTTGGGAAATTTAAAGGACT+CGG - chr6_1:97124732-97124751 Msa0900900:five_prime_UTR 30.0%
ATTATTAATAGTCCGAGTCT+TGG + chr6_1:97124776-97124795 None:intergenic 30.0%
CTAAATTAGCTCACCTAAAT+TGG - chr6_1:97124860-97124879 Msa0900900:intron 30.0%
AAGTCATACTTGATTGAACT+CGG + chr6_1:97124967-97124986 None:intergenic 30.0%
TACCCCTAAAAAAATACACA+AGG + chr6_1:97125674-97125693 None:intergenic 30.0%
TGATGAAAAAAGAAGAGAGA+AGG + chr6_1:97125913-97125932 None:intergenic 30.0%
!!! TTATTTTAGTATGAAGCGGT+CGG + chr6_1:97125939-97125958 None:intergenic 30.0%
!! AGAGTTTTATAGAGGAGAAA+GGG + chr6_1:97125980-97125999 None:intergenic 30.0%
!! AAGAGTTTTATAGAGGAGAA+AGG + chr6_1:97125981-97126000 None:intergenic 30.0%
!!! CGGTTTTATTGTGAATATCA+AGG + chr6_1:97126113-97126132 None:intergenic 30.0%
! ATTTGAAGGAATGTTGTTTG+AGG - chr6_1:97126172-97126191 Msa0900900:intron 30.0%
! GTTTTATCCGATGCAAAAAT+TGG + chr6_1:97126233-97126252 None:intergenic 30.0%
AAAAAAATGGCAGAGTACAA+AGG + chr6_1:97126399-97126418 None:intergenic 30.0%
GAGTATCAACAAAGACAATA+TGG + chr6_1:97126745-97126764 None:intergenic 30.0%
!!! ATGCTTTCAAGTACCTTTTT+TGG - chr6_1:97126928-97126947 Msa0900900:intron 30.0%
!!! AAGTACCTTTTTTGGACTTT+TGG - chr6_1:97126936-97126955 Msa0900900:intron 30.0%
TTGGATATAATTTACTGGTG+TGG - chr6_1:97127051-97127070 Msa0900900:intron 30.0%
TGGATATAATTTACTGGTGT+GGG - chr6_1:97127052-97127071 Msa0900900:intron 30.0%
TGGTGGTAAATAAGTCTAAA+TGG - chr6_1:97127331-97127350 Msa0900900:intron 30.0%
! CTGATAACTTTGTTTCTTCT+TGG - chr6_1:97127461-97127480 Msa0900900:intron 30.0%
!! ACTTTGTTTCTTCTTGGTTT+TGG - chr6_1:97127467-97127486 Msa0900900:intron 30.0%
!!! TTTCTTCTTGGTTTTGGATT+AGG - chr6_1:97127473-97127492 Msa0900900:intron 30.0%
!!! TTCTTCTTGGTTTTGGATTA+GGG - chr6_1:97127474-97127493 Msa0900900:intron 30.0%
ATTTACGAACTTCTTCACTA+TGG - chr6_1:97127630-97127649 Msa0900900:intron 30.0%
!! TTGATATTGGTGCTAAATTC+AGG + chr6_1:97127866-97127885 None:intergenic 30.0%
TTTGTCAACAAAGGGAAATT+TGG + chr6_1:97127906-97127925 None:intergenic 30.0%
GATGATTAATTCGATCAGTT+TGG - chr6_1:97127943-97127962 Msa0900900:intron 30.0%
! ATCAGTTTGGTAATATCTGT+TGG - chr6_1:97127956-97127975 Msa0900900:intron 30.0%
! TCAGTTTGGTAATATCTGTT+GGG - chr6_1:97127957-97127976 Msa0900900:intron 30.0%
ACTTATCAAGAACATAAAGC+AGG + chr6_1:97128011-97128030 None:intergenic 30.0%
! TTTTGCAGTTAATATCCTTG+AGG - chr6_1:97128188-97128207 Msa0900900:intron 30.0%
TTTGCAGTTAATATCCTTGA+GGG - chr6_1:97128189-97128208 Msa0900900:intron 30.0%
! CACATCTATTTGAAATGCTT+GGG + chr6_1:97128323-97128342 None:intergenic 30.0%
! TCACATCTATTTGAAATGCT+TGG + chr6_1:97128324-97128343 None:intergenic 30.0%
AGCATTTCAAATAGATGTGA+TGG - chr6_1:97128324-97128343 Msa0900900:intron 30.0%
GCATTTCAAATAGATGTGAT+GGG - chr6_1:97128325-97128344 Msa0900900:intron 30.0%
TTCTATGACAATTGGCATAA+GGG + chr6_1:97120656-97120675 None:intergenic 30.0%
ATTCTATGACAATTGGCATA+AGG + chr6_1:97120657-97120676 None:intergenic 30.0%
TTCTTTGTTAGTATCTGATG+TGG - chr6_1:97128626-97128645 Msa0900900:intron 30.0%
! TATCTGATGTGGTTTAGTTT+GGG - chr6_1:97128637-97128656 Msa0900900:intron 30.0%
GTTAGACATGATGAAAACAA+AGG - chr6_1:97120890-97120909 Msa0900900:intron 30.0%
!! GATTAAGACTTCAGGTTTTT+CGG + chr6_1:97128876-97128895 None:intergenic 30.0%
! CTTGAACAATAAACTTTTCC+TGG - chr6_1:97129136-97129155 Msa0900900:intron 30.0%
TGAGACAACAACAAATATGA+AGG + chr6_1:97129510-97129529 None:intergenic 30.0%
TATTCCCTGCAAAAAATTTG+AGG + chr6_1:97129579-97129598 None:intergenic 30.0%
GTGATTGTGTTCTTAAATGG+AGG + chr6_1:97118258-97118277 None:intergenic 35.0%
GTGGTGATTGTGTTCTTAAA+TGG + chr6_1:97118261-97118280 None:intergenic 35.0%
TCTAGATGAGAGAAGAACAA+TGG + chr6_1:97118283-97118302 None:intergenic 35.0%
GGAAATAATTCTGTCATGGA+AGG - chr6_1:97119449-97119468 Msa0900900:intron 35.0%
TGAAGTGGTAATCATCAAAC+AGG + chr6_1:97119480-97119499 None:intergenic 35.0%
AATATGCAATAGCAACTTGC+AGG - chr6_1:97119719-97119738 Msa0900900:exon 35.0%
GACTTGCAAATTGCAATCTA+TGG - chr6_1:97119788-97119807 Msa0900900:intron 35.0%
AAGTAGCTTCCACTAATGTT+AGG + chr6_1:97119909-97119928 None:intergenic 35.0%
GATAACGTAAACACATGACA+AGG + chr6_1:97119977-97119996 None:intergenic 35.0%
TGTTTACGTTATCGATGTCA+TGG - chr6_1:97119984-97120003 Msa0900900:intron 35.0%
GTATTTAACCTTCTGCTTTC+TGG - chr6_1:97120234-97120253 Msa0900900:intron 35.0%
TAGATTTCATCGGATGCATA+AGG + chr6_1:97120526-97120545 None:intergenic 35.0%
TATTGGATGTGGTTGAGTTT+GGG - chr6_1:97120830-97120849 Msa0900900:intron 35.0%
! GTGACTTGTGAGCATTTAAA+AGG - chr6_1:97121120-97121139 Msa0900900:intron 35.0%
TCCAACTGCAAAAAATGAAG+AGG - chr6_1:97121229-97121248 Msa0900900:intron 35.0%
!!! TCCTCTTCATTTTTTGCAGT+TGG + chr6_1:97121233-97121252 None:intergenic 35.0%
TTGAAGGTTTGCATATGTCT+GGG + chr6_1:97121562-97121581 None:intergenic 35.0%
TTTGAAGGTTTGCATATGTC+TGG + chr6_1:97121563-97121582 None:intergenic 35.0%
CATTTGAGCATTCATAGGTT+CGG - chr6_1:97121753-97121772 Msa0900900:intron 35.0%
CGAATGCATTCTTACTCTAT+TGG - chr6_1:97122044-97122063 Msa0900900:intron 35.0%
TGCATTCTTACTCTATTGGT+TGG - chr6_1:97122048-97122067 Msa0900900:intron 35.0%
!! TATTGGTTGGCTTATGATAC+TGG - chr6_1:97122061-97122080 Msa0900900:intron 35.0%
!! ATTGGTTGGCTTATGATACT+GGG - chr6_1:97122062-97122081 Msa0900900:intron 35.0%
!! ACTTTCAAGTATTGATCTGG+AGG - chr6_1:97122125-97122144 Msa0900900:intron 35.0%
!! TCTTTGAAGTATTGATCTGC+AGG - chr6_1:97122167-97122186 Msa0900900:intron 35.0%
TCATCATCAAAACCATTTGG+TGG - chr6_1:97122260-97122279 Msa0900900:intron 35.0%
CATCATCAAAACCATTTGGT+GGG - chr6_1:97122261-97122280 Msa0900900:intron 35.0%
CATATACGCTATACTACCTT+CGG + chr6_1:97122321-97122340 None:intergenic 35.0%
TATTGGACTTCAATTCTTGG+AGG - chr6_1:97122370-97122389 Msa0900900:intron 35.0%
GGAGGAAATTCACAAAGATA+AGG - chr6_1:97122388-97122407 Msa0900900:intron 35.0%
!!! CTGATTGCTCTTGTTTTTTG+TGG - chr6_1:97122676-97122695 Msa0900900:intron 35.0%
TGGTTAATATGCACATTTCC+AGG - chr6_1:97122696-97122715 Msa0900900:intron 35.0%
GGTTAATATGCACATTTCCA+GGG - chr6_1:97122697-97122716 Msa0900900:intron 35.0%
TACAGTATGTGAATCTAGCT+GGG + chr6_1:97122762-97122781 None:intergenic 35.0%
! AATAGATGTGATGGGACAAA+AGG - chr6_1:97122859-97122878 Msa0900900:intron 35.0%
CAAAAGGCTTATTAGCATAG+TGG - chr6_1:97122875-97122894 Msa0900900:intron 35.0%
! TGTTTGTTAGCAATGGGATA+TGG - chr6_1:97123170-97123189 Msa0900900:intron 35.0%
AATGGGATATGGTTGAGTTT+GGG - chr6_1:97123181-97123200 Msa0900900:intron 35.0%
! GTGACTTGTGAGCATTTAAA+TGG - chr6_1:97121120-97121139 Msa0900900:intron 35.0%
ATGCAACTGCAAAAATGAAG+AGG - chr6_1:97123615-97123634 Msa0900900:intron 35.0%
AGAGTCGAGTATTATAAGGT+GGG - chr6_1:97123924-97123943 Msa0900900:intron 35.0%
! TTAGTATATGCCTTGTTCCA+TGG - chr6_1:97124201-97124220 Msa0900900:intron 35.0%
ATTATCTATTCTTCTTGGGG+TGG - chr6_1:97124276-97124295 Msa0900900:intron 35.0%
TTCAGTGACGTTGTATCAAA+TGG - chr6_1:97124383-97124402 Msa0900900:intron 35.0%
! CTATGTTTTCCTCTTTTGAC+AGG - chr6_1:97124438-97124457 Msa0900900:intron 35.0%
CTCAATAAAGACAAGCAGTA+AGG - chr6_1:97124630-97124649 Msa0900900:intron 35.0%
ATAAAGACAAGCAGTAAGGA+AGG - chr6_1:97124634-97124653 Msa0900900:intron 35.0%
TAAAGACAAGCAGTAAGGAA+GGG - chr6_1:97124635-97124654 Msa0900900:intron 35.0%
CATGGATTTACTAATCTTGG+AGG - chr6_1:97124673-97124692 Msa0900900:intron 35.0%
ATACAATAAGGAGAATGGAG+GGG + chr6_1:97124703-97124722 None:intergenic 35.0%
TTGGGAAATTTAAAGGACTC+GGG - chr6_1:97124733-97124752 Msa0900900:five_prime_UTR 35.0%
ATTTAAAGGACTCGGGTATT+TGG - chr6_1:97124740-97124759 Msa0900900:five_prime_UTR 35.0%
! TGGTACTAGCTTAAACAAAG+AGG + chr6_1:97125335-97125354 None:intergenic 35.0%
! TTCTTGATGAAAAGCACATG+TGG - chr6_1:97125713-97125732 Msa0900900:intron 35.0%
AAGAGAAGGGTTAAGAAGAA+GGG + chr6_1:97125844-97125863 None:intergenic 35.0%
AAAGAGAAGGGTTAAGAAGA+AGG + chr6_1:97125845-97125864 None:intergenic 35.0%
TGAAAAAAGAAGAGAGAAGG+TGG + chr6_1:97125910-97125929 None:intergenic 35.0%
!! AGTTTTATAGAGGAGAAAGG+GGG + chr6_1:97125978-97125997 None:intergenic 35.0%
!! GAGTTTTATAGAGGAGAAAG+GGG + chr6_1:97125979-97125998 None:intergenic 35.0%
TTGTAACTTGGTTTCGTCAA+TGG + chr6_1:97126080-97126099 None:intergenic 35.0%
! TTTTCACCTCAGCTATTTGA+AGG - chr6_1:97126158-97126177 Msa0900900:intron 35.0%
AACATTCCTTCAAATAGCTG+AGG + chr6_1:97126167-97126186 None:intergenic 35.0%
! GGATCTACCAATTTTTGCAT+CGG - chr6_1:97126223-97126242 Msa0900900:intron 35.0%
TACTCATATCCCGATTCAAA+TGG - chr6_1:97126760-97126779 Msa0900900:intron 35.0%
CTCATCATAACATGGGAAAT+TGG + chr6_1:97126829-97126848 None:intergenic 35.0%
AATGGCTCTCATCATAACAT+GGG + chr6_1:97126836-97126855 None:intergenic 35.0%
TAATGGCTCTCATCATAACA+TGG + chr6_1:97126837-97126856 None:intergenic 35.0%
ATTCTTATCAAATTTGGCCG+AGG + chr6_1:97126862-97126881 None:intergenic 35.0%
CAACACCAAAAGTCCAAAAA+AGG + chr6_1:97126944-97126963 None:intergenic 35.0%
ACCCAAATTTACCTCACTTA+CGG + chr6_1:97127290-97127309 None:intergenic 35.0%
!!! TCTTCTTGGTTTTGGATTAG+GGG - chr6_1:97127475-97127494 Msa0900900:intron 35.0%
TTGAAAGTTGCAATGATGTC+AGG + chr6_1:97127511-97127530 None:intergenic 35.0%
GCAACTTTCAAAGTCATTGA+TGG - chr6_1:97127520-97127539 Msa0900900:intron 35.0%
! CTATGAAGTTTTTCGTCGAA+TGG - chr6_1:97127562-97127581 Msa0900900:intron 35.0%
AACTTTGCTCGCTAATATCT+TGG - chr6_1:97127706-97127725 Msa0900900:intron 35.0%
ACTTTGCTCGCTAATATCTT+GGG - chr6_1:97127707-97127726 Msa0900900:intron 35.0%
TGGTTGTTTAGCCTCTTAAA+AGG - chr6_1:97128082-97128101 Msa0900900:intron 35.0%
GAGAGAAAAAAACGTACAGT+AGG + chr6_1:97128248-97128267 None:intergenic 35.0%
! AATAGATGTGATGGGACAAA+AGG - chr6_1:97122859-97122878 Msa0900900:intron 35.0%
GTATCTGATGTGGTTTAGTT+TGG - chr6_1:97128636-97128655 Msa0900900:intron 35.0%
!! ATCTGATGTGGTTTAGTTTG+GGG - chr6_1:97128638-97128657 Msa0900900:intron 35.0%
!!! ATGTACCTTTTTTGGACTCT+TGG - chr6_1:97128994-97129013 Msa0900900:intron 35.0%
! ACAATAAACTTTTCCTGGTG+TGG - chr6_1:97129141-97129160 Msa0900900:intron 35.0%
! CAATAAACTTTTCCTGGTGT+GGG - chr6_1:97129142-97129161 Msa0900900:intron 35.0%
CTTGCTTCTCAGATATACAA+AGG + chr6_1:97129433-97129452 None:intergenic 35.0%
!!! TCCATCCTCAAATTTTTTGC+AGG - chr6_1:97129571-97129590 Msa0900900:intron 35.0%
!!! CCATCCTCAAATTTTTTGCA+GGG - chr6_1:97129572-97129591 Msa0900900:intron 35.0%
TGCAGGGAATACAAAAGAAA+AGG - chr6_1:97129588-97129607 Msa0900900:intron 35.0%
TCAATGACAAAGCCATATAG+AGG - chr6_1:97129636-97129655 Msa0900900:five_prime_UTR 35.0%
TTGAAAAAGATCTGCAACGA+AGG - chr6_1:97129675-97129694 Msa0900900:five_prime_UTR 35.0%
!!! GTTTTTTTGGCCATATAAGG+TGG - chr6_1:97129759-97129778 Msa0900900:five_prime_UTR 35.0%
GAGAATGAATGTATGGCTGT+AGG + chr6_1:97118153-97118172 None:intergenic 40.0%
GTTCTTAAATGGAGGTCGAA+CGG + chr6_1:97118250-97118269 None:intergenic 40.0%
AGATGAGAGAAGAACAATGG+TGG + chr6_1:97118280-97118299 None:intergenic 40.0%
! CTCTCATCTAGATTTTGCGA+TGG - chr6_1:97118291-97118310 Msa0900900:three_prime_UTR 40.0%
! TCATCTAGATTTTGCGATGG+TGG - chr6_1:97118294-97118313 Msa0900900:three_prime_UTR 40.0%
! GTTTTTACCATCTCGATCCT+CGG + chr6_1:97118343-97118362 None:intergenic 40.0%
TCGAGTTAGGGTTTCATAGA+AGG - chr6_1:97118475-97118494 Msa0900900:intron 40.0%
GATGTTTCTTCAAAAGACGG+AGG - chr6_1:97118549-97118568 Msa0900900:intron 40.0%
TCTACAAAACTCACATGCAG+AGG + chr6_1:97118632-97118651 None:intergenic 40.0%
TTGCAACTTGTGTGCATGAA+TGG + chr6_1:97118930-97118949 None:intergenic 40.0%
CCAGGAATAAAGATCAACAG+AGG + chr6_1:97119151-97119170 None:intergenic 40.0%
CCTCTGTTGATCTTTATTCC+TGG - chr6_1:97119148-97119167 Msa0900900:intron 40.0%
CACCATCACATGTAAGGAAT+GGG + chr6_1:97120126-97120145 None:intergenic 40.0%
AATACCTGCTCTGATGTTGA+AGG + chr6_1:97120219-97120238 None:intergenic 40.0%
CCAATTTACCAGAAAGCAGA+AGG + chr6_1:97120245-97120264 None:intergenic 40.0%
! CCTTCTGCTTTCTGGTAAAT+TGG - chr6_1:97120242-97120261 Msa0900900:intron 40.0%
ATTGATAGAGACTGTCATGG+TGG + chr6_1:97120310-97120329 None:intergenic 40.0%
GTATTGGATGTGGTTGAGTT+TGG - chr6_1:97120829-97120848 Msa0900900:intron 40.0%
ATTGGATGTGGTTGAGTTTG+GGG - chr6_1:97120831-97120850 Msa0900900:intron 40.0%
! AATCGCATATGCAGCTTTGA+AGG + chr6_1:97121578-97121597 None:intergenic 40.0%
TCAAATCAAGTCCAAGTCCA+CGG + chr6_1:97121605-97121624 None:intergenic 40.0%
GCATTCGTAATTGCACGTTA+GGG + chr6_1:97122031-97122050 None:intergenic 40.0%
TGCATTCGTAATTGCACGTT+AGG + chr6_1:97122032-97122051 None:intergenic 40.0%
TTATGATACTGGGATGTCAG+TGG - chr6_1:97122072-97122091 Msa0900900:intron 40.0%
!! TCAAAACCATTTGGTGGGTT+TGG - chr6_1:97122266-97122285 Msa0900900:intron 40.0%
! TTTTCTCCAAACCCACCAAA+TGG + chr6_1:97122275-97122294 None:intergenic 40.0%
! TTGAAGAAGCATATGACCGA+AGG - chr6_1:97122302-97122321 Msa0900900:intron 40.0%
GTCTCTCATCATAACTCACT+AGG + chr6_1:97122729-97122748 None:intergenic 40.0%
ACAGTATGTGAATCTAGCTG+GGG + chr6_1:97122761-97122780 None:intergenic 40.0%
GTACAGTATGTGAATCTAGC+TGG + chr6_1:97122763-97122782 None:intergenic 40.0%
CAATGGGATATGGTTGAGTT+TGG - chr6_1:97123180-97123199 Msa0900900:intron 40.0%
ATGGGATATGGTTGAGTTTG+GGG - chr6_1:97123182-97123201 Msa0900900:intron 40.0%
TATGGTTGAGTTTGGGGATA+TGG - chr6_1:97123188-97123207 Msa0900900:intron 40.0%
!! GAAGAAGCATTAGTTCAGCA+AGG - chr6_1:97123210-97123229 Msa0900900:intron 40.0%
CAACCCTTTCTGAATGCATA+GGG - chr6_1:97123321-97123340 Msa0900900:intron 40.0%
AACCCTTTCTGAATGCATAG+GGG - chr6_1:97123322-97123341 Msa0900900:intron 40.0%
AACCCCTATGCATTCAGAAA+GGG + chr6_1:97123327-97123346 None:intergenic 40.0%
AGGCAGAGTCGAGTATTATA+AGG - chr6_1:97123920-97123939 Msa0900900:intron 40.0%
CAGAGTCGAGTATTATAAGG+TGG - chr6_1:97123923-97123942 Msa0900900:intron 40.0%
TATAAAAGGGCCATGGAACA+AGG + chr6_1:97124214-97124233 None:intergenic 40.0%
! TCCATGGCCCTTTTATATGA+AGG - chr6_1:97124217-97124236 Msa0900900:intron 40.0%
TCCTTCATATAAAAGGGCCA+TGG + chr6_1:97124221-97124240 None:intergenic 40.0%
GCATTTACAAGTTCTCTCCT+AGG - chr6_1:97124298-97124317 Msa0900900:intron 40.0%
GTGACGTTGTATCAAATGGA+CGG - chr6_1:97124387-97124406 Msa0900900:intron 40.0%
GATAACAGACCTGTCAAAAG+AGG + chr6_1:97124450-97124469 None:intergenic 40.0%
CAAAAATCTTGATGGAGCCA+TGG - chr6_1:97125043-97125062 Msa0900900:intron 40.0%
CTAATGGGATCGATGTAGAA+GGG + chr6_1:97125156-97125175 None:intergenic 40.0%
TCTAATGGGATCGATGTAGA+AGG + chr6_1:97125157-97125176 None:intergenic 40.0%
!! AATGGTGATGGAGAAGGAAA+AGG + chr6_1:97125883-97125902 None:intergenic 40.0%
! GTTTTATAGAGGAGAAAGGG+GGG + chr6_1:97125977-97125996 None:intergenic 40.0%
GGAGGTTCTACTTTGTAACT+TGG + chr6_1:97126092-97126111 None:intergenic 40.0%
GCCGTAAGTGAGGTAAATTT+GGG - chr6_1:97127286-97127305 Msa0900900:intron 40.0%
!!! CTTCTTGGTTTTGGATTAGG+GGG - chr6_1:97127476-97127495 Msa0900900:intron 40.0%
!!! TTCTTGGTTTTGGATTAGGG+GGG - chr6_1:97127477-97127496 Msa0900900:intron 40.0%
TCATAGACCGTTGATGTTTC+AGG + chr6_1:97127548-97127567 None:intergenic 40.0%
CGAACTTCTTCACTATGGAA+TGG - chr6_1:97127635-97127654 Msa0900900:intron 40.0%
AACGTACAGTAGGTGAATCT+AGG + chr6_1:97128238-97128257 None:intergenic 40.0%
CTACGCATCAAGCTTGATAA+AGG + chr6_1:97128506-97128525 None:intergenic 40.0%
ACACACCAAGAGTCCAAAAA+AGG + chr6_1:97129002-97129021 None:intergenic 40.0%
GGTGTGTTGTAAATCTTCAG+TGG - chr6_1:97129015-97129034 Msa0900900:intron 40.0%
!!! CCTTTTTAGGTGTACTTTGC+AGG + chr6_1:97129339-97129358 None:intergenic 40.0%
CCTGCAAAGTACACCTAAAA+AGG - chr6_1:97129336-97129355 Msa0900900:five_prime_UTR 40.0%
CTGAGAAGCAAGAAATGAAG+AGG - chr6_1:97129441-97129460 Msa0900900:intron 40.0%
AATGAAGAGGTCAACCACTA+TGG - chr6_1:97129454-97129473 Msa0900900:intron 40.0%
TGTACTACTCCAAACCATAG+TGG + chr6_1:97129471-97129490 None:intergenic 40.0%
CCCTGCAAAAAATTTGAGGA+TGG + chr6_1:97129575-97129594 None:intergenic 40.0%
ATGACAAAGCCATATAGAGG+TGG - chr6_1:97129639-97129658 Msa0900900:five_prime_UTR 40.0%
CATTTCCTTCCACCTCTATA+TGG + chr6_1:97129651-97129670 None:intergenic 40.0%
CATATAGAGGTGGAAGGAAA+TGG - chr6_1:97129649-97129668 Msa0900900:five_prime_UTR 40.0%
CAAGGCTACAACTCTGATGT+TGG + chr6_1:97118219-97118238 None:intergenic 45.0%
TTAAATGGAGGTCGAACGGT+TGG + chr6_1:97118246-97118265 None:intergenic 45.0%
!! TCTAGATTTTGCGATGGTGG+AGG - chr6_1:97118297-97118316 Msa0900900:three_prime_UTR 45.0%
! ACTTGCAGGTCCGCAATTTT+AGG - chr6_1:97119733-97119752 Msa0900900:CDS 45.0%
CCACCATCACATGTAAGGAA+TGG + chr6_1:97120127-97120146 None:intergenic 45.0%
CCATTCCTTACATGTGATGG+TGG - chr6_1:97120124-97120143 Msa0900900:intron 45.0%
!! TTCCTTACATGTGATGGTGG+CGG - chr6_1:97120127-97120146 Msa0900900:intron 45.0%
CTGTGCTTAGTCTCTGATGT+TGG + chr6_1:97120184-97120203 None:intergenic 45.0%
CTAGAAGCAACAGTTCTGCA+AGG - chr6_1:97120859-97120878 Msa0900900:intron 45.0%
CAAATCAAGTCCAAGTCCAC+GGG + chr6_1:97121604-97121623 None:intergenic 45.0%
! ATTCATAGGTTCGGTCGTGT+AGG - chr6_1:97121762-97121781 Msa0900900:intron 45.0%
TTGCCTTATAGCAGCCATGA+AGG - chr6_1:97122416-97122435 Msa0900900:intron 45.0%
GTACCTTCATGGCTGCTATA+AGG + chr6_1:97122422-97122441 None:intergenic 45.0%
CAGTATGTGAATCTAGCTGG+GGG + chr6_1:97122760-97122779 None:intergenic 45.0%
CCTATGCATTCAGAAAGGGT+TGG + chr6_1:97123323-97123342 None:intergenic 45.0%
CCAACCCTTTCTGAATGCAT+AGG - chr6_1:97123320-97123339 Msa0900900:intron 45.0%
CAACCCCTATGCATTCAGAA+AGG + chr6_1:97123328-97123347 None:intergenic 45.0%
GGGTCCTATCACATAGTCAA+AGG + chr6_1:97123689-97123708 None:intergenic 45.0%
GTGGTGTTTACGCTCAGAAT+TGG - chr6_1:97124050-97124069 Msa0900900:intron 45.0%
CGTTGTATCAAATGGACGGA+TGG - chr6_1:97124391-97124410 Msa0900900:intron 45.0%
GGCCTAAAGAATCCAAGACT+CGG - chr6_1:97124761-97124780 Msa0900900:five_prime_UTR 45.0%
GTCCGAGTCTTGGATTCTTT+AGG + chr6_1:97124766-97124785 None:intergenic 45.0%
AAGAAGAAGGGAACACATGC+AGG + chr6_1:97125832-97125851 None:intergenic 45.0%
AAGAGAGAAGGTGGATGCAA+TGG + chr6_1:97125901-97125920 None:intergenic 45.0%
TCGTCAATGGAAGCTTGTGA+TGG + chr6_1:97126067-97126086 None:intergenic 45.0%
TGATGAGAGCCATTACACCT+CGG - chr6_1:97126842-97126861 Msa0900900:intron 45.0%
CAAATTTGGCCGAGGTGTAA+TGG + chr6_1:97126854-97126873 None:intergenic 45.0%
! TTATGACTTGGCCGTAAGTG+AGG - chr6_1:97127276-97127295 Msa0900900:intron 45.0%
GGCCGTAAGTGAGGTAAATT+TGG - chr6_1:97127285-97127304 Msa0900900:intron 45.0%
!!! TCTTGGTTTTGGATTAGGGG+GGG - chr6_1:97127478-97127497 Msa0900900:intron 45.0%
GATGGTGCCTGAAACATCAA+CGG - chr6_1:97127538-97127557 Msa0900900:intron 45.0%
CTAGAAGCAACAGTTCTGCA+AGG - chr6_1:97120859-97120878 Msa0900900:intron 45.0%
AGAGGTCAACCACTATGGTT+TGG - chr6_1:97129459-97129478 Msa0900900:intron 45.0%
CAAAGCCATATAGAGGTGGA+AGG - chr6_1:97129643-97129662 Msa0900900:five_prime_UTR 45.0%
TTCAGACGCTCCACCTTATA+TGG + chr6_1:97129772-97129791 None:intergenic 45.0%
!!! TAAAAACAAAATATTTTTTT+TGG + chr6_1:97121164-97121183 None:intergenic 5.0%
!!! TTTAAATAATATTTCTAATT+AGG - chr6_1:97122960-97122979 Msa0900900:intron 5.0%
!!! TTTTAATATTTAATATGTTT+TGG - chr6_1:97120777-97120796 Msa0900900:intron 5.0%
!! ATATAATTTACTTTATAATA+AGG - chr6_1:97123590-97123609 Msa0900900:intron 5.0%
!! TATAATTTACTTTATAATAA+GGG - chr6_1:97123591-97123610 Msa0900900:intron 5.0%
TTTACCATCTCGATCCTCGG+TGG + chr6_1:97118340-97118359 None:intergenic 50.0%
GGAATGGGCCTTGATCAGTA+TGG + chr6_1:97120111-97120130 None:intergenic 50.0%
GGCCCATTCCTTACATGTGA+TGG - chr6_1:97120121-97120140 Msa0900900:intron 50.0%
ATCGCCTTCAACATCAGAGC+AGG - chr6_1:97120212-97120231 Msa0900900:intron 50.0%
TGCATATGCGATTCTTCCCG+TGG - chr6_1:97121585-97121604 Msa0900900:intron 50.0%
TGAATCTAGCTGGGGGAAGT+GGG + chr6_1:97122753-97122772 None:intergenic 50.0%
CATACGCAGGGTCAAGGAAA+GGG + chr6_1:97123709-97123728 None:intergenic 50.0%
TTTCCTTGACCCTGCGTATG+CGG - chr6_1:97123709-97123728 Msa0900900:intron 50.0%
CTAAAACTCCCGCATACGCA+GGG + chr6_1:97123721-97123740 None:intergenic 50.0%
ACTAAAACTCCCGCATACGC+AGG + chr6_1:97123722-97123741 None:intergenic 50.0%
TTTGTTCCCTGCCAGTCTTG+AGG - chr6_1:97124027-97124046 Msa0900900:intron 50.0%
TTGTTCCCTGCCAGTCTTGA+GGG - chr6_1:97124028-97124047 Msa0900900:intron 50.0%
GTAAACACCACCCTCAAGAC+TGG + chr6_1:97124041-97124060 None:intergenic 50.0%
AAATGGACGGATGGCTACGA+TGG - chr6_1:97124400-97124419 Msa0900900:intron 50.0%
AATGGACGGATGGCTACGAT+GGG - chr6_1:97124401-97124420 Msa0900900:intron 50.0%
! ACGTGTGAGAGAGGCACATA+AGG + chr6_1:97125742-97125761 None:intergenic 50.0%
GGGAACACATGCAGGCAAAT+GGG + chr6_1:97125824-97125843 None:intergenic 50.0%
AGGGAACACATGCAGGCAAA+TGG + chr6_1:97125825-97125844 None:intergenic 50.0%
!! GGATGCAATGGTGATGGAGA+AGG + chr6_1:97125889-97125908 None:intergenic 50.0%
GAAGGTGGATGCAATGGTGA+TGG + chr6_1:97125895-97125914 None:intergenic 50.0%
CAATGGAAGCTTGTGATGGC+TGG + chr6_1:97126063-97126082 None:intergenic 50.0%
TGGTTGTCTCATCACCCTCA+AGG + chr6_1:97128206-97128225 None:intergenic 50.0%
CAGTAGGTGAATCTAGGCGA+GGG + chr6_1:97128232-97128251 None:intergenic 50.0%
ACAGTAGGTGAATCTAGGCG+AGG + chr6_1:97128233-97128252 None:intergenic 50.0%
AGCCGCCACCATCACATGTA+AGG + chr6_1:97120132-97120151 None:intergenic 55.0%
TGCGATTCTTCCCGTGGACT+TGG - chr6_1:97121591-97121610 Msa0900900:intron 55.0%
AACTCACTAGGTTGCTGCCC+TGG + chr6_1:97122717-97122736 None:intergenic 55.0%
GTGAATCTAGCTGGGGGAAG+TGG + chr6_1:97122754-97122773 None:intergenic 55.0%
GCATACGCAGGGTCAAGGAA+AGG + chr6_1:97123710-97123729 None:intergenic 55.0%
TTCCTTGACCCTGCGTATGC+GGG - chr6_1:97123710-97123729 Msa0900900:intron 55.0%
!! TGCGGGAGTTTTAGTGCACC+AGG - chr6_1:97123727-97123746 Msa0900900:intron 55.0%
GATGCTGACACGTGTGAGAG+AGG + chr6_1:97125751-97125770 None:intergenic 55.0%
GAAAGGGGGGATCATGATGG+TGG + chr6_1:97125964-97125983 None:intergenic 55.0%
GGAGAAAGGGGGGATCATGA+TGG + chr6_1:97125967-97125986 None:intergenic 55.0%
GTGAATCTAGGCGAGGGAAG+TGG + chr6_1:97128226-97128245 None:intergenic 55.0%
TTTCCTGGTGTGGGCACTTC+AGG - chr6_1:97129151-97129170 Msa0900900:intron 55.0%
GGTCGAACGGTTGGCATGCA+AGG + chr6_1:97118237-97118256 None:intergenic 60.0%
ACAGACATGCAACGCCACCG+AGG - chr6_1:97118323-97118342 Msa0900900:three_prime_UTR 60.0%
AACGCCACCGAGGATCGAGA+TGG - chr6_1:97118333-97118352 Msa0900900:three_prime_UTR 60.0%
TTCCCTGCCAGTCTTGAGGG+TGG - chr6_1:97124031-97124050 Msa0900900:intron 60.0%
CACCACCCTCAAGACTGGCA+GGG + chr6_1:97124036-97124055 None:intergenic 60.0%
ACACCACCCTCAAGACTGGC+AGG + chr6_1:97124037-97124056 None:intergenic 60.0%
! CATCCTGAAGTGCCCACACC+AGG + chr6_1:97129157-97129176 None:intergenic 60.0%
CTCCCGCATACGCAGGGTCA+AGG + chr6_1:97123715-97123734 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 97118107 97129862 97118107 ID=Msa0900900;Name=Msa0900900
chr6_1 mRNA 97118107 97129862 97118107 ID=Msa0900900-mRNA-1;Parent=Msa0900900;Name=Msa0900900-mRNA-1;_AED=0.35;_eAED=0.35;_QI=840|1|1|1|0.18|0.08|12|367|88
chr6_1 exon 97118107 97118376 97118107 ID=Msa0900900-mRNA-1:exon:16981;Parent=Msa0900900-mRNA-1
chr6_1 exon 97119247 97119332 97119247 ID=Msa0900900-mRNA-1:exon:16980;Parent=Msa0900900-mRNA-1
chr6_1 exon 97119719 97119773 97119719 ID=Msa0900900-mRNA-1:exon:16979;Parent=Msa0900900-mRNA-1
chr6_1 exon 97120343 97120474 97120343 ID=Msa0900900-mRNA-1:exon:16978;Parent=Msa0900900-mRNA-1
chr6_1 exon 97123510 97123581 97123510 ID=Msa0900900-mRNA-1:exon:16977;Parent=Msa0900900-mRNA-1
chr6_1 exon 97124704 97124789 97124704 ID=Msa0900900-mRNA-1:exon:16976;Parent=Msa0900900-mRNA-1
chr6_1 exon 97125191 97125251 97125191 ID=Msa0900900-mRNA-1:exon:16975;Parent=Msa0900900-mRNA-1
chr6_1 exon 97125532 97125724 97125532 ID=Msa0900900-mRNA-1:exon:16974;Parent=Msa0900900-mRNA-1
chr6_1 exon 97127054 97127139 97127054 ID=Msa0900900-mRNA-1:exon:16973;Parent=Msa0900900-mRNA-1
chr6_1 exon 97127736 97127847 97127736 ID=Msa0900900-mRNA-1:exon:16972;Parent=Msa0900900-mRNA-1
chr6_1 exon 97129332 97129404 97129332 ID=Msa0900900-mRNA-1:exon:16971;Parent=Msa0900900-mRNA-1
chr6_1 exon 97129615 97129862 97129615 ID=Msa0900900-mRNA-1:exon:16970;Parent=Msa0900900-mRNA-1
chr6_1 five_prime_UTR 97129615 97129862 97129615 ID=Msa0900900-mRNA-1:five_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 five_prime_UTR 97129332 97129404 97129332 ID=Msa0900900-mRNA-1:five_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 five_prime_UTR 97127736 97127847 97127736 ID=Msa0900900-mRNA-1:five_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 five_prime_UTR 97127054 97127139 97127054 ID=Msa0900900-mRNA-1:five_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 five_prime_UTR 97125532 97125724 97125532 ID=Msa0900900-mRNA-1:five_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 five_prime_UTR 97125191 97125251 97125191 ID=Msa0900900-mRNA-1:five_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 five_prime_UTR 97124723 97124789 97124723 ID=Msa0900900-mRNA-1:five_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 CDS 97124704 97124722 97124704 ID=Msa0900900-mRNA-1:cds;Parent=Msa0900900-mRNA-1
chr6_1 CDS 97123510 97123581 97123510 ID=Msa0900900-mRNA-1:cds;Parent=Msa0900900-mRNA-1
chr6_1 CDS 97120343 97120474 97120343 ID=Msa0900900-mRNA-1:cds;Parent=Msa0900900-mRNA-1
chr6_1 CDS 97119730 97119773 97119730 ID=Msa0900900-mRNA-1:cds;Parent=Msa0900900-mRNA-1
chr6_1 three_prime_UTR 97119719 97119729 97119719 ID=Msa0900900-mRNA-1:three_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 three_prime_UTR 97119247 97119332 97119247 ID=Msa0900900-mRNA-1:three_prime_utr;Parent=Msa0900900-mRNA-1
chr6_1 three_prime_UTR 97118107 97118376 97118107 ID=Msa0900900-mRNA-1:three_prime_utr;Parent=Msa0900900-mRNA-1
Gene Sequence

>Msa0900900

ATGATGAAAACAAAGACATTGACGTTGTATCAAATGGACGGATGGCTACGATGGGCGTATACTATACATCTATGTTTTCCTCTTTTGACAGGGGGGGAGATGAACCTGACATCATTGCAACTTTCAAAGTCATTGATGGTGCCTGAAACATCAACGGTCTATGAAGTTTTTCGTCGAATGGCTGTTTGCAGAGTAGATGCTCAATTTCTAACTGATTCAAATGTTAATATCCTTGAGGGTGATGAGACAACCACTTCCCTCGCCTAG

Protein sequence

>Msa0900900

MMKTKTLTLYQMDGWLRWAYTIHLCFPLLTGGEMNLTSLQLSKSLMVPETSTVYEVFRRMAVCRVDAQFLTDSNVNILEGDETTTSLA*