Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396360 | XP_039686946.1 | 64.964 | 274 | 59 | 5 | 50 | 298 | 70 | 331 | 1.06e-103 | 330 |
| Msa1396360 | XP_039686946.1 | 79.798 | 99 | 17 | 1 | 460 | 558 | 361 | 456 | 3.04e-36 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396360 | sp|Q94JQ3|GLYP3_ARATH | 53.137 | 271 | 86 | 4 | 68 | 298 | 146 | 415 | 1.09e-82 | 270 |
| Msa1396360 | sp|Q94JQ3|GLYP3_ARATH | 46.053 | 76 | 41 | 0 | 460 | 535 | 445 | 520 | 3.35e-11 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396360 | A0A1S2XA06 | 59.108 | 269 | 69 | 4 | 68 | 296 | 137 | 404 | 1.19e-90 | 298 |
| Msa1396360 | A0A1S2XA06 | 75.000 | 76 | 19 | 0 | 460 | 535 | 436 | 511 | 8.87e-22 | 110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0852720 | Msa1396360 | 0.800429 | 1.447072e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396360 | MtrunA17_Chr2g0285171 | 55.160 | 281 | 85 | 4 | 56 | 296 | 138 | 417 | 7.16e-91 | 289 |
| Msa1396360 | MtrunA17_Chr2g0285171 | 75.325 | 77 | 19 | 0 | 460 | 536 | 449 | 525 | 1.83e-26 | 113 |
| Msa1396360 | MtrunA17_Chr1g0186271 | 70.000 | 180 | 44 | 3 | 119 | 298 | 9 | 178 | 1.03e-73 | 237 |
| Msa1396360 | MtrunA17_Chr1g0186271 | 79.798 | 99 | 17 | 1 | 460 | 558 | 208 | 303 | 1.07e-41 | 152 |
| Msa1396360 | MtrunA17_Chr5g0411661 | 37.870 | 338 | 147 | 9 | 8 | 295 | 69 | 393 | 7.69e-60 | 207 |
| Msa1396360 | MtrunA17_Chr3g0121851 | 38.438 | 333 | 143 | 8 | 24 | 298 | 26 | 354 | 9.84e-60 | 205 |
| Msa1396360 | MtrunA17_Chr8g0378091 | 36.637 | 333 | 149 | 8 | 24 | 298 | 26 | 354 | 2.80e-57 | 199 |
| Msa1396360 | MtrunA17_Chr5g0428001 | 36.982 | 338 | 150 | 9 | 8 | 295 | 58 | 382 | 1.56e-56 | 197 |
| Msa1396360 | MtrunA17_Chr3g0115291 | 36.770 | 291 | 123 | 6 | 77 | 313 | 195 | 478 | 1.23e-48 | 177 |
| Msa1396360 | MtrunA17_Chr2g0277581 | 35.439 | 285 | 130 | 6 | 68 | 298 | 199 | 483 | 1.01e-44 | 167 |
| Msa1396360 | MtrunA17_Chr1g0184621 | 82.955 | 88 | 12 | 1 | 471 | 558 | 1 | 85 | 2.37e-42 | 146 |
| Msa1396360 | MtrunA17_Chr7g0268951 | 55.072 | 138 | 51 | 2 | 67 | 193 | 38 | 175 | 3.51e-41 | 147 |
| Msa1396360 | MtrunA17_Chr7g0268941 | 74.026 | 77 | 20 | 0 | 460 | 536 | 82 | 158 | 9.91e-27 | 106 |
| Msa1396360 | MtrunA17_Chr5g0418301 | 33.500 | 200 | 94 | 8 | 262 | 430 | 5 | 196 | 1.79e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396360 | AT4G32520.2 | 53.137 | 271 | 86 | 4 | 68 | 298 | 146 | 415 | 1.11e-83 | 270 |
| Msa1396360 | AT4G32520.2 | 46.053 | 76 | 41 | 0 | 460 | 535 | 445 | 520 | 3.41e-12 | 69.3 |
| Msa1396360 | AT4G32520.1 | 53.137 | 271 | 86 | 4 | 68 | 298 | 146 | 415 | 1.11e-83 | 270 |
| Msa1396360 | AT4G32520.1 | 46.053 | 76 | 41 | 0 | 460 | 535 | 445 | 520 | 3.41e-12 | 69.3 |
| Msa1396360 | AT4G37930.1 | 40.484 | 289 | 123 | 6 | 56 | 296 | 106 | 393 | 3.07e-59 | 206 |
| Msa1396360 | AT4G13890.2 | 40.357 | 280 | 118 | 5 | 68 | 298 | 75 | 354 | 1.28e-57 | 198 |
| Msa1396360 | AT4G13930.1 | 37.725 | 334 | 144 | 10 | 24 | 298 | 26 | 354 | 4.69e-57 | 198 |
| Msa1396360 | AT4G13890.1 | 40.357 | 280 | 118 | 5 | 68 | 298 | 75 | 354 | 1.20e-56 | 197 |
| Msa1396360 | AT5G26780.1 | 36.982 | 338 | 150 | 9 | 8 | 295 | 68 | 392 | 8.10e-56 | 196 |
| Msa1396360 | AT5G26780.4 | 36.982 | 338 | 150 | 9 | 8 | 295 | 68 | 392 | 8.10e-56 | 196 |
| Msa1396360 | AT5G26780.2 | 35.311 | 354 | 150 | 10 | 8 | 295 | 68 | 408 | 5.03e-52 | 186 |
| Msa1396360 | AT5G26780.3 | 35.311 | 354 | 150 | 10 | 8 | 295 | 68 | 408 | 5.03e-52 | 186 |
| Msa1396360 | AT1G22020.2 | 36.842 | 285 | 126 | 5 | 68 | 298 | 205 | 489 | 6.50e-46 | 171 |
| Msa1396360 | AT1G22020.1 | 36.842 | 285 | 126 | 5 | 68 | 298 | 205 | 489 | 6.50e-46 | 171 |
| Msa1396360 | AT1G36370.1 | 36.823 | 277 | 119 | 6 | 77 | 298 | 210 | 485 | 8.56e-43 | 162 |
Find 143 sgRNAs with CRISPR-Local
Find 606 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCACTAAAGTCATAATT+TGG | 0.091712 | tig0022022:-41891 | None:intergenic |
| TCTGGTCCCCTGACTAATTT+TGG | 0.129772 | tig0022022:+42014 | Msa1396360:CDS |
| ATGGATATGACTCATATTAT+TGG | 0.196478 | tig0022022:+42594 | Msa1396360:CDS |
| AGAAGTGGTTGTTATGTAAA+AGG | 0.201058 | tig0022022:-46549 | None:intergenic |
| GCAAGTACCCTTTCATTAAA+AGG | 0.205651 | tig0022022:-41942 | None:intergenic |
| TGACATGTGAATCATCTTTC+GGG | 0.250760 | tig0022022:-46658 | None:intergenic |
| TAAGAGGGTGTGGTGGTATT+TGG | 0.253905 | tig0022022:+46831 | Msa1396360:CDS |
| TGTCTTGTTCATTTCTCAAA+TGG | 0.284834 | tig0022022:+46734 | Msa1396360:CDS |
| AAAGCAAACCTTGAGGGTTT+TGG | 0.288963 | tig0022022:-42673 | None:intergenic |
| TATATCCATGTTCAATTAAT+CGG | 0.289156 | tig0022022:-43256 | None:intergenic |
| ACATGGTTCTTGTTGATCTT+AGG | 0.292437 | tig0022022:+43306 | Msa1396360:CDS |
| GATACCCGGTGCTTTGCTTT+AGG | 0.308079 | tig0022022:+39683 | Msa1396360:five_prime_UTR |
| TTGACATGTGAATCATCTTT+CGG | 0.313259 | tig0022022:-46659 | None:intergenic |
| CATGGATATAAACTGGTTTC+TGG | 0.317509 | tig0022022:+43269 | Msa1396360:CDS |
| TGTTATGTAAAAGGGAAGAT+AGG | 0.319688 | tig0022022:-46540 | None:intergenic |
| TGGAAAATACTCGGTGCTTT+AGG | 0.322092 | tig0022022:+39765 | Msa1396360:CDS |
| ATGTTTGGTCTTGGGAACTA+TGG | 0.326529 | tig0022022:+47634 | Msa1396360:CDS |
| TGGATATGACTCATATTATT+GGG | 0.330973 | tig0022022:+42595 | Msa1396360:CDS |
| AATTGAACATGGATATAAAC+TGG | 0.360515 | tig0022022:+43262 | Msa1396360:CDS |
| GTCTTGTTCATTTCTCAAAT+GGG | 0.361498 | tig0022022:+46735 | Msa1396360:CDS |
| CGAAGCAAAATGTTTGGTCT+TGG | 0.366954 | tig0022022:+47625 | Msa1396360:CDS |
| GCAATGACAGTAAGAGGATT+TGG | 0.367931 | tig0022022:+47415 | Msa1396360:CDS |
| ATGCGAGAATAATCAATATC+TGG | 0.372559 | tig0022022:-42442 | None:intergenic |
| GTGTTATTTCATTTCTTTGA+AGG | 0.373109 | tig0022022:+39826 | Msa1396360:CDS |
| CCCACTTATTACAATCTAGA+TGG | 0.377120 | tig0022022:-41971 | None:intergenic |
| GGATCGCAGGTTGTTTGTGT+GGG | 0.381314 | tig0022022:+46857 | Msa1396360:CDS |
| AAACTTGAAGAAGGCTTTGA+TGG | 0.394662 | tig0022022:-46686 | None:intergenic |
| GTATTTAAATTTGACTCAAA+AGG | 0.403116 | tig0022022:+42177 | Msa1396360:intron |
| GGGTGTGGTGGTATTTGGTC+TGG | 0.411304 | tig0022022:+46836 | Msa1396360:CDS |
| TTCTCCTGCCTTTGCAGCTG+TGG | 0.413351 | tig0022022:+41098 | Msa1396360:CDS |
| TTCCGTGCATGGGGTCGATC+TGG | 0.414303 | tig0022022:+42866 | Msa1396360:CDS |
| CTTCACTAAAGTCATAATTT+GGG | 0.415051 | tig0022022:-41890 | None:intergenic |
| GGGTCAAATCGAATTGGATC+AGG | 0.416329 | tig0022022:-46638 | None:intergenic |
| GAAGTGGTTGTTATGTAAAA+GGG | 0.417272 | tig0022022:-46548 | None:intergenic |
| TGAGCTACGTGATCGAATAA+TGG | 0.421036 | tig0022022:+42055 | Msa1396360:CDS |
| GTGAGTGTTGAACCATTATC+TGG | 0.424139 | tig0022022:+41996 | Msa1396360:CDS |
| TCTTTCGGGTCAAATCGAAT+TGG | 0.424306 | tig0022022:-46644 | None:intergenic |
| TTGTCTCCCAAAGAAAATTC+AGG | 0.428516 | tig0022022:-47556 | None:intergenic |
| GAAGCAAAATGTTTGGTCTT+GGG | 0.428922 | tig0022022:+47626 | Msa1396360:CDS |
| TACGGATCGATTCGGTTAAG+AGG | 0.436667 | tig0022022:+46815 | Msa1396360:CDS |
| TGGTATTTGGTCTGGATCGC+AGG | 0.441757 | tig0022022:+46844 | Msa1396360:CDS |
| CCGTCTCGAAGCAAAATGTT+TGG | 0.443972 | tig0022022:+47619 | Msa1396360:CDS |
| TGTACGCTCCAAAATTAGTC+AGG | 0.446751 | tig0022022:-42022 | None:intergenic |
| ACAAGGTTTCAGATTTATGT+AGG | 0.447564 | tig0022022:+47575 | Msa1396360:CDS |
| TCCATCTAGATTGTAATAAG+TGG | 0.448988 | tig0022022:+41970 | Msa1396360:CDS |
| TTTCTTTGAAGGTACTGAAA+AGG | 0.449066 | tig0022022:+39837 | Msa1396360:CDS |
| ATAACAATTATTATTGTCAA+TGG | 0.458290 | tig0022022:-42895 | None:intergenic |
| CCAAAGCTCATTGTTGCTAG+TGG | 0.459117 | tig0022022:+42412 | Msa1396360:CDS |
| GGAAACAGTTCAAGAGAAAG+TGG | 0.464598 | tig0022022:-46589 | None:intergenic |
| GTTTCTGACGGCATTTCCAT+TGG | 0.468286 | tig0022022:+47385 | Msa1396360:CDS |
| TATTTAAATTTGACTCAAAA+GGG | 0.469471 | tig0022022:+42178 | Msa1396360:CDS |
| GTTATGTAAAAGGGAAGATA+GGG | 0.471877 | tig0022022:-46539 | None:intergenic |
| TCAAGAAAGGTTCCGTGCAT+GGG | 0.471972 | tig0022022:+42856 | Msa1396360:CDS |
| TTAGTCAGGGGACCAGATAA+TGG | 0.472218 | tig0022022:-42008 | None:intergenic |
| TTTGCAGCTGTGGTGCTCCA+AGG | 0.472579 | tig0022022:+41108 | Msa1396360:CDS |
| ACAGAAGCAATGACAGTAAG+AGG | 0.475955 | tig0022022:+47409 | Msa1396360:CDS |
| TTTCTGACGGCATTTCCATT+GGG | 0.479444 | tig0022022:+47386 | Msa1396360:CDS |
| TCTTCCACCCATTCGCTGAC+AGG | 0.484177 | tig0022022:-46506 | None:intergenic |
| TTCAAGAAAGGTTCCGTGCA+TGG | 0.484836 | tig0022022:+42855 | Msa1396360:CDS |
| GAAAATGAAACCGAGGAGAA+TGG | 0.487073 | tig0022022:+39745 | Msa1396360:CDS |
| TCTTATTGATTACGATAGGC+TGG | 0.487738 | tig0022022:+42366 | Msa1396360:CDS |
| TGGATCGCAGGTTGTTTGTG+TGG | 0.489898 | tig0022022:+46856 | Msa1396360:CDS |
| CACTTCCTCCAGTCTATAAG+AGG | 0.495246 | tig0022022:+42810 | Msa1396360:intron |
| CTCCAGTCTATAAGAGGTCC+AGG | 0.495539 | tig0022022:+42816 | Msa1396360:intron |
| AATATCAAAGCAAACCTTGA+GGG | 0.497403 | tig0022022:-42679 | None:intergenic |
| CCACTAGCAACAATGAGCTT+TGG | 0.498212 | tig0022022:-42412 | None:intergenic |
| GGTATGATATTCTTCAAGAA+AGG | 0.499004 | tig0022022:+42843 | Msa1396360:CDS |
| GTTACTGCTACGGATCGATT+CGG | 0.499482 | tig0022022:+46807 | Msa1396360:CDS |
| AAGTTTGGTCTCGGGATCTA+CGG | 0.499762 | tig0022022:+47504 | Msa1396360:CDS |
| TACCAACTTGATGAATCAAC+AGG | 0.500046 | tig0022022:+42247 | Msa1396360:CDS |
| AGAAAGAAATTACAAGAAGC+AGG | 0.506411 | tig0022022:+46454 | Msa1396360:CDS |
| AAGAATATCATACCACCTCC+TGG | 0.508345 | tig0022022:-42834 | None:intergenic |
| AGCACCACAGCTGCAAAGGC+AGG | 0.511283 | tig0022022:-41102 | None:intergenic |
| AGAGCACAAAGCAACAAGAA+TGG | 0.529305 | tig0022022:+39658 | Msa1396360:five_prime_UTR |
| AACTTGAAGAAGGCTTTGAT+GGG | 0.532171 | tig0022022:-46685 | None:intergenic |
| GGGTGTTCCCTGTCAGCGAA+TGG | 0.532377 | tig0022022:+46498 | Msa1396360:CDS |
| CGAAAGATTGCAGATGAAGT+AGG | 0.533423 | tig0022022:+42558 | Msa1396360:intron |
| GTCAGCGAATGGGTGGAAGA+TGG | 0.536257 | tig0022022:+46509 | Msa1396360:CDS |
| TTCCAAATTTACCTCCGCAC+GGG | 0.536538 | tig0022022:-42919 | None:intergenic |
| CCATCTAGATTGTAATAAGT+GGG | 0.537570 | tig0022022:+41971 | Msa1396360:CDS |
| GATCGCAGGTTGTTTGTGTG+GGG | 0.538674 | tig0022022:+46858 | Msa1396360:CDS |
| TGTCATTGCTTCTGTCCCAA+TGG | 0.545096 | tig0022022:-47401 | None:intergenic |
| TCGCAGGTTGTTTGTGTGGG+GGG | 0.546113 | tig0022022:+46860 | Msa1396360:CDS |
| GGTGTTCCCTGTCAGCGAAT+GGG | 0.549990 | tig0022022:+46499 | Msa1396360:CDS |
| AAATTCAGGAAACTTGAAGA+AGG | 0.552817 | tig0022022:-46695 | None:intergenic |
| AAAATATTACAAGAAAGAAA+GGG | 0.557101 | tig0022022:+46478 | Msa1396360:CDS |
| CAACACCTAAAGCAAAGCAC+CGG | 0.557370 | tig0022022:-39688 | None:intergenic |
| TTGGAGCACCACAGCTGCAA+AGG | 0.558884 | tig0022022:-41106 | None:intergenic |
| CCCATGGTGGAAGAGAGGCG+TGG | 0.559468 | tig0022022:+39803 | Msa1396360:CDS |
| CGAGGAGAATGGAAAATACT+CGG | 0.559629 | tig0022022:+39756 | Msa1396360:CDS |
| CCACGCCTCTCTTCCACCAT+GGG | 0.559728 | tig0022022:-39803 | None:intergenic |
| TCTATAAGAGGTCCAGGAGG+TGG | 0.560721 | tig0022022:+42822 | Msa1396360:CDS |
| CTTCCACCCATTCGCTGACA+GGG | 0.561354 | tig0022022:-46505 | None:intergenic |
| TCGATTCGGTTAAGAGGGTG+TGG | 0.562724 | tig0022022:+46821 | Msa1396360:CDS |
| CGAATTGGATCAGGGTCAAG+AGG | 0.566208 | tig0022022:-46629 | None:intergenic |
| CACCTGTTGATTCATCAAGT+TGG | 0.567306 | tig0022022:-42249 | None:intergenic |
| GTGTTGTGTCATGCTTCCCA+TGG | 0.571428 | tig0022022:+39787 | Msa1396360:CDS |
| GTTGATTCATCAAGTTGGTA+CGG | 0.573378 | tig0022022:-42244 | None:intergenic |
| CCATGGTGGAAGAGAGGCGT+GGG | 0.576760 | tig0022022:+39804 | Msa1396360:CDS |
| CGAGAATAATCAATATCTGG+TGG | 0.578942 | tig0022022:-42439 | None:intergenic |
| ATCGCAGGTTGTTTGTGTGG+GGG | 0.579260 | tig0022022:+46859 | Msa1396360:CDS |
| CTCCAGATCGACCCCATGCA+CGG | 0.579441 | tig0022022:-42868 | None:intergenic |
| CAAAGCTCATTGTTGCTAGT+GGG | 0.581498 | tig0022022:+42413 | Msa1396360:CDS |
| TCCAAATTTACCTCCGCACG+GGG | 0.582242 | tig0022022:-42918 | None:intergenic |
| TGCTTCCCATGGTGGAAGAG+AGG | 0.590422 | tig0022022:+39798 | Msa1396360:CDS |
| GTTCCCTGTCAGCGAATGGG+TGG | 0.590560 | tig0022022:+46502 | Msa1396360:CDS |
| TGTGGATAGCAAAGCAGAAG+TGG | 0.591558 | tig0022022:-46564 | None:intergenic |
| CCCACGCCTCTCTTCCACCA+TGG | 0.591891 | tig0022022:-39804 | None:intergenic |
| TGAATCAGCGAGCACAGACT+CGG | 0.593354 | tig0022022:-42625 | None:intergenic |
| ATCAGGGTCAAGAGGGATTG+CGG | 0.594045 | tig0022022:-46621 | None:intergenic |
| GTTCAAGAGAAAGTGGGGTG+TGG | 0.595877 | tig0022022:-46582 | None:intergenic |
| TGTGGCCACCAAAACCCTCA+AGG | 0.599873 | tig0022022:+42665 | Msa1396360:CDS |
| ACGGATCGATTCGGTTAAGA+GGG | 0.601536 | tig0022022:+46816 | Msa1396360:CDS |
| GAAACAGTTCAAGAGAAAGT+GGG | 0.601770 | tig0022022:-46588 | None:intergenic |
| CAGATCTTATTGATTACGAT+AGG | 0.608518 | tig0022022:+42362 | Msa1396360:intron |
| CAACAAGAATGGAAGATACC+CGG | 0.609157 | tig0022022:+39669 | Msa1396360:five_prime_UTR |
| GTACGCTCCAAAATTAGTCA+GGG | 0.611340 | tig0022022:-42021 | None:intergenic |
| TGGGACAGAAGCGTTTCTGA+CGG | 0.615329 | tig0022022:+47373 | Msa1396360:intron |
| ATTCCAAATTTACCTCCGCA+CGG | 0.617004 | tig0022022:-42920 | None:intergenic |
| TTGTGTCATGCTTCCCATGG+TGG | 0.620338 | tig0022022:+39790 | Msa1396360:CDS |
| GGTCAAATCGAATTGGATCA+GGG | 0.620771 | tig0022022:-46637 | None:intergenic |
| ATTACAATCTAGATGGAATG+TGG | 0.625467 | tig0022022:-41964 | None:intergenic |
| GCTAACCGATTAATTGAACA+TGG | 0.626125 | tig0022022:+43251 | Msa1396360:CDS |
| GGCGAAGAAGAAATTACAAG+AGG | 0.626566 | tig0022022:+46424 | Msa1396360:intron |
| AACACCTAAAGCAAAGCACC+GGG | 0.634715 | tig0022022:-39687 | None:intergenic |
| CAAAGGCAGGAGAAGAGTAG+CGG | 0.635777 | tig0022022:-41089 | None:intergenic |
| CAAGAAAGGTTCCGTGCATG+GGG | 0.640916 | tig0022022:+42857 | Msa1396360:CDS |
| TAGCAACAATGAGCTTTGGT+CGG | 0.651894 | tig0022022:-42408 | None:intergenic |
| GAATTGGATCAGGGTCAAGA+GGG | 0.652772 | tig0022022:-46628 | None:intergenic |
| CATCTAGATTGTAATAAGTG+GGG | 0.659932 | tig0022022:+41972 | Msa1396360:CDS |
| GAGGGATTGCGGCGACAGTG+AGG | 0.666292 | tig0022022:-46610 | None:intergenic |
| GGATATAAACTGGTTTCTGG+TGG | 0.669092 | tig0022022:+43272 | Msa1396360:CDS |
| AATCCATGAAAATGAAACCG+AGG | 0.670534 | tig0022022:+39738 | Msa1396360:exon |
| AAACAGTTCAAGAGAAAGTG+GGG | 0.673488 | tig0022022:-46587 | None:intergenic |
| CGACTATGGATTCAACGAAG+AGG | 0.680796 | tig0022022:+46885 | Msa1396360:CDS |
| TACGCTCCAAAATTAGTCAG+GGG | 0.687420 | tig0022022:-42020 | None:intergenic |
| ATTCGGTTAAGAGGGTGTGG+TGG | 0.698005 | tig0022022:+46824 | Msa1396360:CDS |
| AATAGCAGACTTAATTCACG+AGG | 0.700492 | tig0022022:+47456 | Msa1396360:CDS |
| TGGTGGTAATGATAATGACA+TGG | 0.701181 | tig0022022:+43289 | Msa1396360:CDS |
| TAATTGTTATCCCCGTGCGG+AGG | 0.715182 | tig0022022:+42908 | Msa1396360:CDS |
| TAATAATTGTTATCCCCGTG+CGG | 0.731928 | tig0022022:+42905 | Msa1396360:CDS |
| ATAGCAGACTTAATTCACGA+GGG | 0.747949 | tig0022022:+47457 | Msa1396360:CDS |
| CAGTCTATAAGAGGTCCAGG+AGG | 0.755804 | tig0022022:+42819 | Msa1396360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATTTTTATATGTTTTA+AGG | - | tig0022022:40478-40497 | None:intergenic | 10.0% |
| !!! | AAAAAATTCTGAATTTTTTT+TGG | + | tig0022022:40517-40536 | Msa1396360:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | + | tig0022022:40549-40568 | Msa1396360:intron | 10.0% |
| !! | ATTATCCTAATTATTATTTA+GGG | - | tig0022022:41460-41479 | None:intergenic | 10.0% |
| !! | TATTATCCTAATTATTATTT+AGG | - | tig0022022:41461-41480 | None:intergenic | 10.0% |
| !!! | TAAAATTGTTTTACATATAT+TGG | + | tig0022022:42285-42304 | Msa1396360:intron | 10.0% |
| !!! | ATTGAATAAATTTTTTGTAA+GGG | - | tig0022022:43751-43770 | None:intergenic | 10.0% |
| !!! | AATTGAATAAATTTTTTGTA+AGG | - | tig0022022:43752-43771 | None:intergenic | 10.0% |
| !!! | ATATATTTTTGATTGAATTT+CGG | - | tig0022022:44529-44548 | None:intergenic | 10.0% |
| !! | AAAATATATTATTCTTCAAT+TGG | - | tig0022022:44916-44935 | None:intergenic | 10.0% |
| !!! | TTGAAGAATAATATATTTTT+TGG | + | tig0022022:44917-44936 | Msa1396360:intron | 10.0% |
| !!! | TGAAGAATAATATATTTTTT+GGG | + | tig0022022:44918-44937 | Msa1396360:intron | 10.0% |
| !! | TAATTCAACAATATTAATAA+TGG | - | tig0022022:45172-45191 | None:intergenic | 10.0% |
| !!! | AAATATCTATTTTTTTTCTT+AGG | + | tig0022022:47232-47251 | Msa1396360:intron | 10.0% |
| !!! | AATATCTATTTTTTTTCTTA+GGG | + | tig0022022:47233-47252 | Msa1396360:intron | 10.0% |
| !!! | AATATATTTGAAATCAACTT+TGG | + | tig0022022:40167-40186 | Msa1396360:intron | 15.0% |
| !! | GAAAAGTTAACATATTTATA+GGG | - | tig0022022:40258-40277 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | tig0022022:40318-40337 | None:intergenic | 15.0% |
| !!! | TTAGTGATTGAAAATTTTAT+AGG | - | tig0022022:40319-40338 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATCACTAATTT+TGG | + | tig0022022:40322-40341 | Msa1396360:intron | 15.0% |
| !!! | ATATGATTTTACTTTAAAAG+AGG | + | tig0022022:40601-40620 | Msa1396360:intron | 15.0% |
| !!! | TATGATTTTACTTTAAAAGA+GGG | + | tig0022022:40602-40621 | Msa1396360:intron | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | + | tig0022022:40633-40652 | Msa1396360:intron | 15.0% |
| !! | TTAATCCTATATTAAAACAT+GGG | - | tig0022022:40736-40755 | None:intergenic | 15.0% |
| !! | TTTAATCCTATATTAAAACA+TGG | - | tig0022022:40737-40756 | None:intergenic | 15.0% |
| !! | TTTAACCCTTTAATTAATAT+AGG | + | tig0022022:40865-40884 | Msa1396360:intron | 15.0% |
| !! | TTAACCCTTTAATTAATATA+GGG | + | tig0022022:40866-40885 | Msa1396360:intron | 15.0% |
| !! | TTAGATAAATCAATTCAATT+TGG | + | tig0022022:41299-41318 | Msa1396360:intron | 15.0% |
| !!! | TCTATTGATTTAAAAATGAT+TGG | - | tig0022022:41355-41374 | None:intergenic | 15.0% |
| !!! | CGCATATATATTATTTTTTT+AGG | + | tig0022022:41394-41413 | Msa1396360:intron | 15.0% |
| !!! | TTTTAGACATTTATGATTTA+TGG | + | tig0022022:41485-41504 | Msa1396360:intron | 15.0% |
| !!! | TTTTAGACATTTATGATTTA+TGG | + | tig0022022:41485-41504 | Msa1396360:intron | 15.0% |
| !!! | TAAAATTCCTTTTAATGAAA+GGG | + | tig0022022:41935-41954 | Msa1396360:CDS | 15.0% |
| !! | TATTTAAATTTGACTCAAAA+GGG | + | tig0022022:42178-42197 | Msa1396360:CDS | 15.0% |
| !! | CATAATTTCAAAAAAATTTG+AGG | - | tig0022022:42224-42243 | None:intergenic | 15.0% |
| !! | ATAACAATTATTATTGTCAA+TGG | - | tig0022022:42898-42917 | None:intergenic | 15.0% |
| !!! | GTGAAATTTTGATATTTATA+AGG | - | tig0022022:43527-43546 | None:intergenic | 15.0% |
| !!! | AGTCTTTGTATTTTTTTTTT+TGG | + | tig0022022:43914-43933 | Msa1396360:intron | 15.0% |
| !! | AAAAAGAAAAAGAAAAAAGA+GGG | + | tig0022022:43959-43978 | Msa1396360:intron | 15.0% |
| !! | TAATCTCTAACAAAAAATTA+AGG | + | tig0022022:44429-44448 | Msa1396360:intron | 15.0% |
| !!! | TTTATGTATTGATTGAATTT+CGG | - | tig0022022:44557-44576 | None:intergenic | 15.0% |
| !! | AATAATCTATTTGTTTACAT+CGG | - | tig0022022:44738-44757 | None:intergenic | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | - | tig0022022:44778-44797 | None:intergenic | 15.0% |
| !! | TAACTCAATGTTTATTATTT+AGG | + | tig0022022:44865-44884 | Msa1396360:intron | 15.0% |
| !! | AACTCAATGTTTATTATTTA+GGG | + | tig0022022:44866-44885 | Msa1396360:intron | 15.0% |
| !!! | GAAGAATAATATATTTTTTG+GGG | + | tig0022022:44919-44938 | Msa1396360:intron | 15.0% |
| !! | TAAAGTCTGTTTAATTAAAT+AGG | + | tig0022022:45069-45088 | Msa1396360:intron | 15.0% |
| !!! | AATATCTAGAATTTCATTTT+TGG | - | tig0022022:45561-45580 | None:intergenic | 15.0% |
| !! | TTTCTTTAGTATTATTTACT+AGG | + | tig0022022:45917-45936 | Msa1396360:intron | 15.0% |
| !!! | AATATCCATTTTTTTTCTTA+GGG | - | tig0022022:45993-46012 | None:intergenic | 15.0% |
| !!! | AAATATCCATTTTTTTTCTT+AGG | - | tig0022022:45994-46013 | None:intergenic | 15.0% |
| !! | AAACAAAACAAATAACAAAA+TGG | + | tig0022022:46392-46411 | Msa1396360:intron | 15.0% |
| !! | AAAAATATTACAAGAAAGAA+AGG | + | tig0022022:46477-46496 | Msa1396360:CDS | 15.0% |
| !! | AAAATATTACAAGAAAGAAA+GGG | + | tig0022022:46478-46497 | Msa1396360:CDS | 15.0% |
| !!! | TGTTTTAATTGTGTTTTTTT+AGG | + | tig0022022:47002-47021 | Msa1396360:intron | 15.0% |
| !!! | GTTTTAATTGTGTTTTTTTA+GGG | + | tig0022022:47003-47022 | Msa1396360:intron | 15.0% |
| !!! | ATATCTATTTTTTTTCTTAG+GGG | + | tig0022022:47234-47253 | Msa1396360:intron | 15.0% |
| !!! | TTTTAAAATCTATGATGCAT+AGG | - | tig0022022:40138-40157 | None:intergenic | 20.0% |
| !!! | CATAGATTTTAAAACAACTT+TGG | + | tig0022022:40144-40163 | Msa1396360:intron | 20.0% |
| !! | ATATTTAACCCTTAAAACAT+CGG | - | tig0022022:40226-40245 | None:intergenic | 20.0% |
| !!! | TTAAGGGTTAAATATGTTTT+TGG | + | tig0022022:40231-40250 | Msa1396360:intron | 20.0% |
| !! | CGAAAAGTTAACATATTTAT+AGG | - | tig0022022:40259-40278 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | tig0022022:40629-40648 | None:intergenic | 20.0% |
| !!! | GTGAAGATTGAAAATTTTAT+AGG | + | tig0022022:40632-40651 | Msa1396360:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | tig0022022:40693-40712 | Msa1396360:intron | 20.0% |
| !!! | TTTAACCCATGTTTTAATAT+AGG | + | tig0022022:40728-40747 | Msa1396360:intron | 20.0% |
| !! | TTTGCCCTATATTAATTAAA+GGG | - | tig0022022:40873-40892 | None:intergenic | 20.0% |
| !! | ATTTGCCCTATATTAATTAA+AGG | - | tig0022022:40874-40893 | None:intergenic | 20.0% |
| !! | TAGCTTTCAAAACAAAATAA+GGG | - | tig0022022:40969-40988 | None:intergenic | 20.0% |
| !!! | AATTGATTTATCTAATTGAG+CGG | - | tig0022022:41294-41313 | None:intergenic | 20.0% |
| !!! | TTTATGGCTTTTAGTAAAAT+CGG | + | tig0022022:41562-41581 | Msa1396360:intron | 20.0% |
| !!! | TTTGTTTTGTTTTTATCACA+TGG | + | tig0022022:41661-41680 | Msa1396360:intron | 20.0% |
| !!! | TTGTTTTGTTTTTATCACAT+GGG | + | tig0022022:41662-41681 | Msa1396360:intron | 20.0% |
| !!! | ATGTGCTATTTTCAAATATT+AGG | + | tig0022022:41852-41871 | Msa1396360:intron | 20.0% |
| !!! | TATTTTCAAATATTAGGTGA+AGG | + | tig0022022:41858-41877 | Msa1396360:intron | 20.0% |
| !!! | GTAAAATTCCTTTTAATGAA+AGG | + | tig0022022:41934-41953 | Msa1396360:CDS | 20.0% |
| !! | TTTGAGTCAAATTTAAATAC+TGG | - | tig0022022:42177-42196 | None:intergenic | 20.0% |
| !! | GTATTTAAATTTGACTCAAA+AGG | + | tig0022022:42177-42196 | Msa1396360:intron | 20.0% |
| !!! | ATTTGAATTTTGTGATATTG+TGG | + | tig0022022:42647-42666 | Msa1396360:CDS | 20.0% |
| !!! | TTTTGGTATTTTTTAAAGTG+TGG | - | tig0022022:43111-43130 | None:intergenic | 20.0% |
| !! | TATATCCATGTTCAATTAAT+CGG | - | tig0022022:43259-43278 | None:intergenic | 20.0% |
| !!! | AGATTTTGCTTATTGATTTT+AGG | + | tig0022022:43483-43502 | Msa1396360:intron | 20.0% |
| !!! | GATTTTGCTTATTGATTTTA+GGG | + | tig0022022:43484-43503 | Msa1396360:intron | 20.0% |
| !! | AAACGAATATGTTAAATCTA+AGG | + | tig0022022:43680-43699 | Msa1396360:intron | 20.0% |
| !!! | CCTAAAAAAGTATAATCTAT+GGG | - | tig0022022:43723-43742 | None:intergenic | 20.0% |
| !!! | ACCTAAAAAAGTATAATCTA+TGG | - | tig0022022:43724-43743 | None:intergenic | 20.0% |
| !!! | AGTCTTTGTATTTTTTTTTG+TGG | + | tig0022022:43815-43834 | Msa1396360:intron | 20.0% |
| !! | CAAAAAGAAAAAGAAAAAAG+AGG | + | tig0022022:43958-43977 | Msa1396360:intron | 20.0% |
| !!! | TACAAAGATTTTGATTGTTT+AGG | - | tig0022022:44407-44426 | None:intergenic | 20.0% |
| !!! | CTATTGACAATTATATCTTT+TGG | - | tig0022022:44628-44647 | None:intergenic | 20.0% |
| !! | TATATTATTCTTCAATTGGT+TGG | - | tig0022022:44912-44931 | None:intergenic | 20.0% |
| !! | TATAAAAAAACTTAATAGGC+CGG | - | tig0022022:45136-45155 | None:intergenic | 20.0% |
| !!! | TTGGTGTAAAATAGATTTTT+TGG | + | tig0022022:45311-45330 | Msa1396360:intron | 20.0% |
| !! | GTTGATTAATATGAAATACA+GGG | - | tig0022022:45629-45648 | None:intergenic | 20.0% |
| !!! | TGTTGATTAATATGAAATAC+AGG | - | tig0022022:45630-45649 | None:intergenic | 20.0% |
| !! | ATCATTTATGATGAATAAGT+TGG | - | tig0022022:45801-45820 | None:intergenic | 20.0% |
| !!! | ATATCCATTTTTTTTCTTAG+GGG | - | tig0022022:45992-46011 | None:intergenic | 20.0% |
| !! | TAATTAAATAAATACACACG+TGG | - | tig0022022:47122-47141 | None:intergenic | 20.0% |
| !! | CATAATTTCAATAAATGATG+AGG | - | tig0022022:46145-46164 | None:intergenic | 20.0% |
| !! | AAAAGAGAACATAAAAATTC+AGG | - | tig0022022:46712-46731 | None:intergenic | 20.0% |
| !!! | GTGTTTTTTTAATTGTGTTA+CGG | + | tig0022022:46965-46984 | Msa1396360:intron | 20.0% |
| !!! | TTATATTTGAGATATTGATG+AGG | + | tig0022022:47080-47099 | Msa1396360:intron | 20.0% |
| !! | TAATTAAATAAATACACACG+TGG | + | tig0022022:47122-47141 | Msa1396360:intron | 20.0% |
| !!! | TATCTATTTTTTTTCTTAGG+GGG | + | tig0022022:47235-47254 | Msa1396360:intron | 20.0% |
| !!! | GTGTTATTTCATTTCTTTGA+AGG | + | tig0022022:39826-39845 | Msa1396360:CDS | 25.0% |
| !! | ACTTTTGATGAAAATAGTAG+AGG | + | tig0022022:39953-39972 | Msa1396360:intron | 25.0% |
| !! | CTTTTGATGAAAATAGTAGA+GGG | + | tig0022022:39954-39973 | Msa1396360:intron | 25.0% |
| !! | TTTTGATGAAAATAGTAGAG+GGG | + | tig0022022:39955-39974 | Msa1396360:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | tig0022022:40662-40681 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | tig0022022:40661-40680 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | tig0022022:40661-40680 | Msa1396360:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | tig0022022:40662-40681 | Msa1396360:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | tig0022022:40692-40711 | Msa1396360:intron | 25.0% |
| !!! | ACATGGGTTAAATATGTTTT+TGG | - | tig0022022:40720-40739 | None:intergenic | 25.0% |
| ! | TAAACTAAAATTCATCCCAA+TGG | + | tig0022022:40824-40843 | Msa1396360:intron | 25.0% |
| ! | GTAGCTTTCAAAACAAAATA+AGG | - | tig0022022:40970-40989 | None:intergenic | 25.0% |
| !! | CTATAATGTGCCATTAATAT+AGG | + | tig0022022:41251-41270 | Msa1396360:intron | 25.0% |
| !!! | TTTTAGGTTAAACATGTATC+TGG | + | tig0022022:41410-41429 | Msa1396360:intron | 25.0% |
| ! | CAATGCCCTAAATAATAATT+AGG | + | tig0022022:41452-41471 | Msa1396360:intron | 25.0% |
| !! | TTTATGGCTTTTAGTAAAAC+CGG | + | tig0022022:41501-41520 | Msa1396360:intron | 25.0% |
| !!! | TGTTTTGTTTTTATCACATG+GGG | + | tig0022022:41663-41682 | Msa1396360:intron | 25.0% |
| ! | AATGGATGTAAAAGGAAATA+AGG | + | tig0022022:41704-41723 | Msa1396360:intron | 25.0% |
| ! | ATGGATGTAAAAGGAAATAA+GGG | + | tig0022022:41705-41724 | Msa1396360:intron | 25.0% |
| ! | ACATGGGCATATATATTAAT+GGG | - | tig0022022:41808-41827 | None:intergenic | 25.0% |
| ! | TACATGGGCATATATATTAA+TGG | - | tig0022022:41809-41828 | None:intergenic | 25.0% |
| ! | CTTCACTAAAGTCATAATTT+GGG | - | tig0022022:41893-41912 | None:intergenic | 25.0% |
| ! | ACTTCACTAAAGTCATAATT+TGG | - | tig0022022:41894-41913 | None:intergenic | 25.0% |
| ! | ACATTAGAACAACAATGTAA+TGG | - | tig0022022:42138-42157 | None:intergenic | 25.0% |
| !!! | TACATATATTGGCTTATTTG+TGG | + | tig0022022:42296-42315 | Msa1396360:intron | 25.0% |
| ! | ATGGATATGACTCATATTAT+TGG | + | tig0022022:42594-42613 | Msa1396360:CDS | 25.0% |
| ! | TGGATATGACTCATATTATT+GGG | + | tig0022022:42595-42614 | Msa1396360:CDS | 25.0% |
| !! | TTAATCATTTCACAGTTTTG+AGG | - | tig0022022:42776-42795 | None:intergenic | 25.0% |
| ! | TAAATGCATCTTATTCCATA+GGG | - | tig0022022:42979-42998 | None:intergenic | 25.0% |
| ! | ATAAATGCATCTTATTCCAT+AGG | - | tig0022022:42980-42999 | None:intergenic | 25.0% |
| ! | TTAATAGTGTAGAACTATCT+AGG | + | tig0022022:43026-43045 | Msa1396360:intron | 25.0% |
| ! | TAATAGTGTAGAACTATCTA+GGG | + | tig0022022:43027-43046 | Msa1396360:intron | 25.0% |
| !! | CTTTAAAAAATACCAAAAGC+AGG | + | tig0022022:43113-43132 | Msa1396360:intron | 25.0% |
| ! | TATGAAGGAATGTTATTGTT+CGG | - | tig0022022:43196-43215 | None:intergenic | 25.0% |
| ! | AATTGAACATGGATATAAAC+TGG | + | tig0022022:43262-43281 | Msa1396360:CDS | 25.0% |
| !! | TTTAGGGTGAATTAAGTAAA+TGG | + | tig0022022:43500-43519 | Msa1396360:intron | 25.0% |
| !!! | GGACAGATTTTTTTTTTACA+AGG | + | tig0022022:43566-43585 | Msa1396360:intron | 25.0% |
| !! | TTTTTACAAGGACTATTCTT+AGG | + | tig0022022:43578-43597 | Msa1396360:intron | 25.0% |
| !! | TTTTACAAGGACTATTCTTA+GGG | + | tig0022022:43579-43598 | Msa1396360:intron | 25.0% |
| !! | TTTTACTGTTCCTTTATAGT+TGG | - | tig0022022:43663-43682 | None:intergenic | 25.0% |
| !!! | CCCATAGATTATACTTTTTT+AGG | + | tig0022022:43720-43739 | Msa1396360:intron | 25.0% |
| !!! | CTTTGTATTTTTTTTTGTGG+TGG | + | tig0022022:43818-43837 | Msa1396360:intron | 25.0% |
| !! | AAATACGTGTGTAGATTTTA+TGG | - | tig0022022:44090-44109 | None:intergenic | 25.0% |
| !! | CATATTAGAGATGCTTTAAA+TGG | - | tig0022022:44152-44171 | None:intergenic | 25.0% |
| !! | TTAAAGCATCTCTAATATGA+AGG | + | tig0022022:44153-44172 | Msa1396360:intron | 25.0% |
| !! | CTTGATTTTTGTAGTCTAAA+AGG | - | tig0022022:44275-44294 | None:intergenic | 25.0% |
| !! | GGTTGGTATAAATTTATATC+CGG | - | tig0022022:44895-44914 | None:intergenic | 25.0% |
| ! | ACAGACTTTATAAAAAGCTT+AGG | - | tig0022022:45059-45078 | None:intergenic | 25.0% |
| ! | AAATAGACCAAATCTTATGA+AGG | - | tig0022022:45262-45281 | None:intergenic | 25.0% |
| !!! | AATAGATTTTTTGGCTTCAT+CGG | + | tig0022022:45320-45339 | Msa1396360:intron | 25.0% |
| !!! | GGATCTATATTTTTTGAAGT+AGG | + | tig0022022:45405-45424 | Msa1396360:intron | 25.0% |
| !! | CTAAAAAAGCATAAGATCAA+GGG | - | tig0022022:45604-45623 | None:intergenic | 25.0% |
| !! | ACTAAAAAAGCATAAGATCA+AGG | - | tig0022022:45605-45624 | None:intergenic | 25.0% |
| ! | AAAGCAAACATGCAAAATAA+GGG | - | tig0022022:45873-45892 | None:intergenic | 25.0% |
| ! | AAAAGCAAACATGCAAAATA+AGG | - | tig0022022:45874-45893 | None:intergenic | 25.0% |
| !!! | TATCCATTTTTTTTCTTAGG+GGG | - | tig0022022:45991-46010 | None:intergenic | 25.0% |
| ! | AAAATCAGACTTTCAAAAGA+GGG | - | tig0022022:47191-47210 | None:intergenic | 25.0% |
| !!! | TTTGTGATTGTTGATTTTGA+TGG | - | tig0022022:46298-46317 | None:intergenic | 25.0% |
| ! | AGAATGGTTAATTAGTGTTT+GGG | - | tig0022022:46344-46363 | None:intergenic | 25.0% |
| !!! | ATAACAAAATGGATTGAGAA+AGG | + | tig0022022:46403-46422 | Msa1396360:intron | 25.0% |
| ! | CAATGTTTGTTTCAATTTCT+GGG | + | tig0022022:46910-46929 | Msa1396360:intron | 25.0% |
| ! | AAAATCAGACTTTCAAAAGA+GGG | + | tig0022022:47191-47210 | Msa1396360:intron | 25.0% |
| ! | ATTAGCACATGTTAGTAAAT+AGG | - | tig0022022:47309-47328 | None:intergenic | 25.0% |
| !! | TTTCTTTGAAGGTACTGAAA+AGG | + | tig0022022:39837-39856 | Msa1396360:CDS | 30.0% |
| GAAAAGGTGAGTATGAAATT+TGG | + | tig0022022:39853-39872 | Msa1396360:intron | 30.0% | |
| TCATTTCTAACAGCATCTAA+TGG | + | tig0022022:39914-39933 | Msa1396360:intron | 30.0% | |
| !! | AATTTTGCACCGATGTTTTA+AGG | + | tig0022022:40214-40233 | Msa1396360:intron | 30.0% |
| !! | ATTTTGCACCGATGTTTTAA+GGG | + | tig0022022:40215-40234 | Msa1396360:intron | 30.0% |
| TTATAGGGACTAAAAGTTGA+AGG | - | tig0022022:40648-40667 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | tig0022022:40648-40667 | Msa1396360:intron | 30.0% | |
| !! | TGTCACTTTACAAAATAGAG+GGG | - | tig0022022:40939-40958 | None:intergenic | 30.0% |
| !! | GTGTCACTTTACAAAATAGA+GGG | - | tig0022022:40940-40959 | None:intergenic | 30.0% |
| !! | AGTGTCACTTTACAAAATAG+AGG | - | tig0022022:40941-40960 | None:intergenic | 30.0% |
| CTTTCAAAACAAAATAAGGG+AGG | - | tig0022022:40966-40985 | None:intergenic | 30.0% | |
| TTAACACTGTTAAACTCCAA+GGG | - | tig0022022:41001-41020 | None:intergenic | 30.0% | |
| TTTAACACTGTTAAACTCCA+AGG | - | tig0022022:41002-41021 | None:intergenic | 30.0% | |
| ! | AGTTATTTCATCAGAAACCT+TGG | - | tig0022022:41128-41147 | None:intergenic | 30.0% |
| TGATGAAATAACTCCAATAG+TGG | + | tig0022022:41135-41154 | Msa1396360:intron | 30.0% | |
| TTAGTAAAATCGGAAGTGAT+CGG | + | tig0022022:41572-41591 | Msa1396360:intron | 30.0% | |
| TAACCTTGAATGGATGTAAA+AGG | + | tig0022022:41696-41715 | Msa1396360:intron | 30.0% | |
| ! | TTTCCTTTTACATCCATTCA+AGG | - | tig0022022:41702-41721 | None:intergenic | 30.0% |
| ACTGTCATGTTGCAAAATAA+AGG | + | tig0022022:41733-41752 | Msa1396360:intron | 30.0% | |
| CTGTCATGTTGCAAAATAAA+GGG | + | tig0022022:41734-41753 | Msa1396360:intron | 30.0% | |
| TGTCATGTTGCAAAATAAAG+GGG | + | tig0022022:41735-41754 | Msa1396360:intron | 30.0% | |
| !! | TGACATTTTGGCAAAACTTA+AGG | + | tig0022022:41765-41784 | Msa1396360:intron | 30.0% |
| !! | GACATTTTGGCAAAACTTAA+GGG | + | tig0022022:41766-41785 | Msa1396360:intron | 30.0% |
| TTCAAATATTAGGTGAAGGA+AGG | + | tig0022022:41862-41881 | Msa1396360:intron | 30.0% | |
| ATTACAATCTAGATGGAATG+TGG | - | tig0022022:41967-41986 | None:intergenic | 30.0% | |
| TCCATCTAGATTGTAATAAG+TGG | + | tig0022022:41970-41989 | Msa1396360:CDS | 30.0% | |
| CCATCTAGATTGTAATAAGT+GGG | + | tig0022022:41971-41990 | Msa1396360:CDS | 30.0% | |
| CATCTAGATTGTAATAAGTG+GGG | + | tig0022022:41972-41991 | Msa1396360:CDS | 30.0% | |
| ! | TAGTTTTTCCAATTCCAAAG+TGG | + | tig0022022:42108-42127 | Msa1396360:intron | 30.0% |
| !! | AATGTAATGGATTTCCACTT+TGG | - | tig0022022:42125-42144 | None:intergenic | 30.0% |
| TTGTAATTCAAAAGCAAGTG+GGG | - | tig0022022:42342-42361 | None:intergenic | 30.0% | |
| GTTGTAATTCAAAAGCAAGT+GGG | - | tig0022022:42343-42362 | None:intergenic | 30.0% | |
| TGTTGTAATTCAAAAGCAAG+TGG | - | tig0022022:42344-42363 | None:intergenic | 30.0% | |
| ! | CAGATCTTATTGATTACGAT+AGG | + | tig0022022:42362-42381 | Msa1396360:intron | 30.0% |
| ATGCGAGAATAATCAATATC+TGG | - | tig0022022:42445-42464 | None:intergenic | 30.0% | |
| !!! | AGTAGGTGCTTTTTTTATGA+TGG | + | tig0022022:42575-42594 | Msa1396360:CDS | 30.0% |
| AATATCAAAGCAAACCTTGA+GGG | - | tig0022022:42682-42701 | None:intergenic | 30.0% | |
| !! | GTTTGCTTTGATATTGGTTT+CGG | + | tig0022022:42687-42706 | Msa1396360:intron | 30.0% |
| GGTATGATATTCTTCAAGAA+AGG | + | tig0022022:42843-42862 | Msa1396360:CDS | 30.0% | |
| GAAAGAAAGGAATTGATCAA+AGG | - | tig0022022:42948-42967 | None:intergenic | 30.0% | |
| AAATGCATCTTATTCCATAG+GGG | - | tig0022022:42978-42997 | None:intergenic | 30.0% | |
| ATTAAAATGACATGCTAGGA+AGG | - | tig0022022:43011-43030 | None:intergenic | 30.0% | |
| CACTATTAAAATGACATGCT+AGG | - | tig0022022:43015-43034 | None:intergenic | 30.0% | |
| AATAGTGTAGAACTATCTAG+GGG | + | tig0022022:43028-43047 | Msa1396360:intron | 30.0% | |
| !! | TCAATATCGCTTTTCAACAT+TGG | + | tig0022022:43147-43166 | Msa1396360:intron | 30.0% |
| !! | TTTTCAACATTGGTTAGAGT+TGG | + | tig0022022:43157-43176 | Msa1396360:intron | 30.0% |
| ! | TTTCAACATTGGTTAGAGTT+GGG | + | tig0022022:43158-43177 | Msa1396360:intron | 30.0% |
| ACATTATTGCACCATTTCTA+AGG | - | tig0022022:43416-43435 | None:intergenic | 30.0% | |
| CAGTAATATACACAACACTA+CGG | - | tig0022022:43456-43475 | None:intergenic | 30.0% | |
| ! | TCACTTTCCTTTAGCATTTT+TGG | + | tig0022022:43543-43562 | Msa1396360:intron | 30.0% |
| ! | CACTTTCCTTTAGCATTTTT+GGG | + | tig0022022:43544-43563 | Msa1396360:intron | 30.0% |
| ! | ACTTTCCTTTAGCATTTTTG+GGG | + | tig0022022:43545-43564 | Msa1396360:intron | 30.0% |
| TTTACAAGGACTATTCTTAG+GGG | + | tig0022022:43580-43599 | Msa1396360:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | tig0022022:43863-43882 | None:intergenic | 30.0% | |
| ! | GTAGATTTTATGGCTAAAGA+AGG | - | tig0022022:44080-44099 | None:intergenic | 30.0% |
| TGGAAATGGTAATACAACAT+TGG | - | tig0022022:44132-44151 | None:intergenic | 30.0% | |
| ! | AGAGATGCTTTAAATGGAAA+TGG | - | tig0022022:44146-44165 | None:intergenic | 30.0% |
| TATTTGTGAGAGTGATTGTT+TGG | - | tig0022022:44240-44259 | None:intergenic | 30.0% | |
| ATCACTCTCACAAATAATGT+TGG | + | tig0022022:44244-44263 | Msa1396360:intron | 30.0% | |
| TACAAAAATCAAGACCTATC+TGG | + | tig0022022:44282-44301 | Msa1396360:intron | 30.0% | |
| ! | AAGCCAATTTTATCCATAGT+TGG | + | tig0022022:44682-44701 | Msa1396360:intron | 30.0% |
| ATTTAGTAAACGACCAACTA+TGG | - | tig0022022:44698-44717 | None:intergenic | 30.0% | |
| TTTCGCCAACTGAATTTATT+TGG | + | tig0022022:44840-44859 | Msa1396360:intron | 30.0% | |
| TTCGCCAACTGAATTTATTT+GGG | + | tig0022022:44841-44860 | Msa1396360:intron | 30.0% | |
| TTACCCCAAATAAATTCAGT+TGG | - | tig0022022:44848-44867 | None:intergenic | 30.0% | |
| ! | TGTTTATTATTTAGGGTAGC+CGG | + | tig0022022:44873-44892 | Msa1396360:intron | 30.0% |
| CTTTAAATAGACTAGGCTAT+AGG | - | tig0022022:44999-45018 | None:intergenic | 30.0% | |
| AGCTAGACTTTAAATAGACT+AGG | - | tig0022022:45006-45025 | None:intergenic | 30.0% | |
| AAAAGCCTATTAAGTCTATC+AGG | + | tig0022022:45110-45129 | Msa1396360:intron | 30.0% | |
| ! | CAGACATATTCATGTGTTTT+AGG | + | tig0022022:45236-45255 | Msa1396360:intron | 30.0% |
| ! | TTTTAGGCCTTCATAAGATT+TGG | + | tig0022022:45252-45271 | Msa1396360:intron | 30.0% |
| CTATTTAGTAGTAGACTTGA+AGG | + | tig0022022:45276-45295 | Msa1396360:intron | 30.0% | |
| TTTAAAAATGAGCCTATGAC+AGG | + | tig0022022:45367-45386 | Msa1396360:intron | 30.0% | |
| AACCCTAAGTCTATATTGAT+GGG | + | tig0022022:45472-45491 | Msa1396360:intron | 30.0% | |
| TTCCCATCAATATAGACTTA+GGG | - | tig0022022:45477-45496 | None:intergenic | 30.0% | |
| TATTCCGAATTGCATTATGT+AGG | + | tig0022022:45751-45770 | Msa1396360:intron | 30.0% | |
| ATTCCGAATTGCATTATGTA+GGG | + | tig0022022:45752-45771 | Msa1396360:intron | 30.0% | |
| AAGCAAACATGCAAAATAAG+GGG | - | tig0022022:45872-45891 | None:intergenic | 30.0% | |
| ! | TCGCAACTATTTGAAACATA+GGG | - | tig0022022:47264-47283 | None:intergenic | 30.0% |
| ! | ATCGCAACTATTTGAAACAT+AGG | - | tig0022022:47263-47282 | None:intergenic | 30.0% |
| CAAAATCAGACTTTCAAAAG+AGG | - | tig0022022:47190-47209 | None:intergenic | 30.0% | |
| ! | ATGGAGAAAAAGGATTTTCA+AGG | - | tig0022022:46279-46298 | None:intergenic | 30.0% |
| !! | GTTGATTTTGATGGAGAAAA+AGG | - | tig0022022:46289-46308 | None:intergenic | 30.0% |
| ! | GTTAATTAGTGTTTGGGTTA+TGG | - | tig0022022:46338-46357 | None:intergenic | 30.0% |
| GAGAATGGTTAATTAGTGTT+TGG | - | tig0022022:46345-46364 | None:intergenic | 30.0% | |
| AGAAAGAAATTACAAGAAGC+AGG | + | tig0022022:46454-46473 | Msa1396360:CDS | 30.0% | |
| GTTATGTAAAAGGGAAGATA+GGG | - | tig0022022:46542-46561 | None:intergenic | 30.0% | |
| TGTTATGTAAAAGGGAAGAT+AGG | - | tig0022022:46543-46562 | None:intergenic | 30.0% | |
| GAAGTGGTTGTTATGTAAAA+GGG | - | tig0022022:46551-46570 | None:intergenic | 30.0% | |
| AGAAGTGGTTGTTATGTAAA+AGG | - | tig0022022:46552-46571 | None:intergenic | 30.0% | |
| TTGACATGTGAATCATCTTT+CGG | - | tig0022022:46662-46681 | None:intergenic | 30.0% | |
| AAATTCAGGAAACTTGAAGA+AGG | - | tig0022022:46698-46717 | None:intergenic | 30.0% | |
| ! | TGTCTTGTTCATTTCTCAAA+TGG | + | tig0022022:46734-46753 | Msa1396360:CDS | 30.0% |
| ! | GTCTTGTTCATTTCTCAAAT+GGG | + | tig0022022:46735-46754 | Msa1396360:CDS | 30.0% |
| ! | TGTCAATTTTGTTACTGCTA+CGG | + | tig0022022:46797-46816 | Msa1396360:CDS | 30.0% |
| GCAATGTTTGTTTCAATTTC+TGG | + | tig0022022:46909-46928 | Msa1396360:intron | 30.0% | |
| ! | TTGTTTCAATTTCTGGGTTA+CGG | + | tig0022022:46916-46935 | Msa1396360:intron | 30.0% |
| !! | TTTTAATTGTGTTACGGCTA+TGG | + | tig0022022:46971-46990 | Msa1396360:intron | 30.0% |
| ! | TATTTGAGATATTGATGAGG+TGG | + | tig0022022:47083-47102 | Msa1396360:intron | 30.0% |
| CAAAATCAGACTTTCAAAAG+AGG | + | tig0022022:47190-47209 | Msa1396360:intron | 30.0% | |
| ! | ATCGCAACTATTTGAAACAT+AGG | + | tig0022022:47263-47282 | Msa1396360:intron | 30.0% |
| ! | TCGCAACTATTTGAAACATA+GGG | + | tig0022022:47264-47283 | Msa1396360:intron | 30.0% |
| CTAACATGTGCTAATTACAA+AGG | + | tig0022022:47314-47333 | Msa1396360:intron | 30.0% | |
| ACAAGGTTTCAGATTTATGT+AGG | + | tig0022022:47575-47594 | Msa1396360:CDS | 30.0% | |
| AATCCATGAAAATGAAACCG+AGG | + | tig0022022:39738-39757 | Msa1396360:exon | 35.0% | |
| TAAAATTCATCCCAATGGCA+AGG | + | tig0022022:40829-40848 | Msa1396360:intron | 35.0% | |
| AAAATTCATCCCAATGGCAA+GGG | + | tig0022022:40830-40849 | Msa1396360:intron | 35.0% | |
| AGTGACATTTAGGCAAAACT+CGG | - | tig0022022:40911-40930 | None:intergenic | 35.0% | |
| ! | GTCACTTTACAAAATAGAGG+GGG | - | tig0022022:40938-40957 | None:intergenic | 35.0% |
| GTTCTTCCAAGAATAATTGC+AGG | - | tig0022022:41202-41221 | None:intergenic | 35.0% | |
| !! | TAGCAAGCATGTGTTTTGTT+TGG | - | tig0022022:41227-41246 | None:intergenic | 35.0% |
| !! | GAAAGAAGCGCCTATATTAA+TGG | - | tig0022022:41264-41283 | None:intergenic | 35.0% |
| TTAGTAAAACCGGAAGTGAT+CGG | + | tig0022022:41511-41530 | Msa1396360:intron | 35.0% | |
| TACTAGTTGCCGAATGAAAT+TGG | + | tig0022022:41619-41638 | Msa1396360:intron | 35.0% | |
| TCTGTTCTGCCAATTTCATT+CGG | - | tig0022022:41631-41650 | None:intergenic | 35.0% | |
| ! | TTTTTATCACATGGGGCTAA+CGG | + | tig0022022:41670-41689 | Msa1396360:intron | 35.0% |
| GATGTAAAAGGAAATAAGGG+AGG | + | tig0022022:41708-41727 | Msa1396360:intron | 35.0% | |
| GTCATGTTGCAAAATAAAGG+GGG | + | tig0022022:41736-41755 | Msa1396360:intron | 35.0% | |
| !! | ATTTTGGCAAAACTTAAGGG+AGG | + | tig0022022:41769-41788 | Msa1396360:intron | 35.0% |
| GAACGAAGAGATGAATACAT+GGG | - | tig0022022:41824-41843 | None:intergenic | 35.0% | |
| TGAACGAAGAGATGAATACA+TGG | - | tig0022022:41825-41844 | None:intergenic | 35.0% | |
| TGTATTCATCTCTTCGTTCA+CGG | + | tig0022022:41825-41844 | Msa1396360:intron | 35.0% | |
| GCAAGTACCCTTTCATTAAA+AGG | - | tig0022022:41945-41964 | None:intergenic | 35.0% | |
| CCCACTTATTACAATCTAGA+TGG | - | tig0022022:41974-41993 | None:intergenic | 35.0% | |
| !! | ATGGATTTCCACTTTGGAAT+TGG | - | tig0022022:42119-42138 | None:intergenic | 35.0% |
| !! | GTTGATTCATCAAGTTGGTA+CGG | - | tig0022022:42247-42266 | None:intergenic | 35.0% |
| TACCAACTTGATGAATCAAC+AGG | + | tig0022022:42247-42266 | Msa1396360:CDS | 35.0% | |
| ! | TCTTATTGATTACGATAGGC+TGG | + | tig0022022:42366-42385 | Msa1396360:CDS | 35.0% |
| CGAGAATAATCAATATCTGG+TGG | - | tig0022022:42442-42461 | None:intergenic | 35.0% | |
| CAATATCAAAGCAAACCTTG+AGG | - | tig0022022:42683-42702 | None:intergenic | 35.0% | |
| ! | CTCAAGGTTTGCTTTGATAT+TGG | + | tig0022022:42681-42700 | Msa1396360:intron | 35.0% |
| TAATAATTGTTATCCCCGTG+CGG | + | tig0022022:42905-42924 | Msa1396360:CDS | 35.0% | |
| ATAGTGTAGAACTATCTAGG+GGG | + | tig0022022:43029-43048 | Msa1396360:intron | 35.0% | |
| ! | ACTTGACATATACCTGCTTT+TGG | - | tig0022022:43128-43147 | None:intergenic | 35.0% |
| GCTAACCGATTAATTGAACA+TGG | + | tig0022022:43251-43270 | Msa1396360:CDS | 35.0% | |
| ! | CATGGATATAAACTGGTTTC+TGG | + | tig0022022:43269-43288 | Msa1396360:CDS | 35.0% |
| ! | TGGTGGTAATGATAATGACA+TGG | + | tig0022022:43289-43308 | Msa1396360:CDS | 35.0% |
| ACATGGTTCTTGTTGATCTT+AGG | + | tig0022022:43306-43325 | Msa1396360:CDS | 35.0% | |
| GAGAGCAAGAAGATTACAAA+TGG | - | tig0022022:43332-43351 | None:intergenic | 35.0% | |
| ! | CATTTCTAAGGATTAAGGAG+GGG | - | tig0022022:43404-43423 | None:intergenic | 35.0% |
| ! | CCATTTCTAAGGATTAAGGA+GGG | - | tig0022022:43405-43424 | None:intergenic | 35.0% |
| ! | ACCATTTCTAAGGATTAAGG+AGG | - | tig0022022:43406-43425 | None:intergenic | 35.0% |
| ! | TGCACCATTTCTAAGGATTA+AGG | - | tig0022022:43409-43428 | None:intergenic | 35.0% |
| TACGCAGAATCCAACTATAA+AGG | + | tig0022022:43650-43669 | Msa1396360:intron | 35.0% | |
| !!! | GTATTTTTTTTTGTGGTGGC+CGG | + | tig0022022:43822-43841 | Msa1396360:intron | 35.0% |
| !!! | TATTTTTTTTTGTGGTGGCC+GGG | + | tig0022022:43823-43842 | Msa1396360:intron | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | - | tig0022022:43858-43877 | None:intergenic | 35.0% | |
| AACATTGGTGCATGTTCTTA+GGG | - | tig0022022:44117-44136 | None:intergenic | 35.0% | |
| !!! | GATTTTGATTGTTTAGGTGC+TGG | - | tig0022022:44401-44420 | None:intergenic | 35.0% |
| CGACCAACTATGGATAAAAT+TGG | - | tig0022022:44688-44707 | None:intergenic | 35.0% | |
| TCGCCAACTGAATTTATTTG+GGG | + | tig0022022:44842-44861 | Msa1396360:intron | 35.0% | |
| !!! | TATATTTTTTGGGGTAGCCA+AGG | + | tig0022022:44928-44947 | Msa1396360:intron | 35.0% |
| GCTCATTTACTAAAAACGCT+AGG | + | tig0022022:45033-45052 | Msa1396360:intron | 35.0% | |
| !!! | TTTTGAAGTAGGCTAGACTT+AGG | + | tig0022022:45416-45435 | Msa1396360:intron | 35.0% |
| CATCAATATAGACTTAGGGT+TGG | - | tig0022022:45473-45492 | None:intergenic | 35.0% | |
| CAACCCTAAGTCTATATTGA+TGG | + | tig0022022:45471-45490 | Msa1396360:intron | 35.0% | |
| CTTCCCATCAATATAGACTT+AGG | - | tig0022022:45478-45497 | None:intergenic | 35.0% | |
| TATTGATGGGAAGTTCTACA+AGG | + | tig0022022:45485-45504 | Msa1396360:intron | 35.0% | |
| ! | GACTGACGGAAAATTTTACA+TGG | + | tig0022022:45507-45526 | Msa1396360:intron | 35.0% |
| TAATCAACATCACATCCTTC+AGG | + | tig0022022:45641-45660 | Msa1396360:intron | 35.0% | |
| AATCAACATCACATCCTTCA+GGG | + | tig0022022:45642-45661 | Msa1396360:intron | 35.0% | |
| TATCAACATGGCTCACATAA+TGG | + | tig0022022:45692-45711 | Msa1396360:intron | 35.0% | |
| GGTCAACAAGAATTTAGTGT+CGG | + | tig0022022:45713-45732 | Msa1396360:intron | 35.0% | |
| GTCAACAAGAATTTAGTGTC+GGG | + | tig0022022:45714-45733 | Msa1396360:intron | 35.0% | |
| TTCCGAATTGCATTATGTAG+GGG | + | tig0022022:45753-45772 | Msa1396360:intron | 35.0% | |
| ! | ATGAATAAGTTGGAAATCCG+AGG | - | tig0022022:45791-45810 | None:intergenic | 35.0% |
| ATGATGAATTTCAAGCCACT+AGG | + | tig0022022:45816-45835 | Msa1396360:intron | 35.0% | |
| !!! | TTTTTTGTCATGCAACCTAG+TGG | - | tig0022022:45834-45853 | None:intergenic | 35.0% |
| ! | ACTAGGCTTAAATGCACTTT+TGG | + | tig0022022:45934-45953 | Msa1396360:intron | 35.0% |
| ! | GCAACTATTTGAAACATAGG+GGG | - | tig0022022:47266-47285 | None:intergenic | 35.0% |
| ! | CGCAACTATTTGAAACATAG+GGG | - | tig0022022:47265-47284 | None:intergenic | 35.0% |
| TAGCCCCCTAAGAAAAAAAA+TGG | + | tig0022022:45985-46004 | Msa1396360:intron | 35.0% | |
| !!! | TATTTTGACCCCCTATGTTT+TGG | + | tig0022022:46009-46028 | Msa1396360:intron | 35.0% |
| TTTCAAGGTTGAATGTTGGA+TGG | - | tig0022022:46264-46283 | None:intergenic | 35.0% | |
| !! | GGATTTTCAAGGTTGAATGT+TGG | - | tig0022022:46268-46287 | None:intergenic | 35.0% |
| !! | TCTATGTTGTTTCCTGAGTT+GGG | - | tig0022022:46367-46386 | None:intergenic | 35.0% |
| !! | TTCTATGTTGTTTCCTGAGT+TGG | - | tig0022022:46368-46387 | None:intergenic | 35.0% |
| AAACAGTTCAAGAGAAAGTG+GGG | - | tig0022022:46590-46609 | None:intergenic | 35.0% | |
| GAAACAGTTCAAGAGAAAGT+GGG | - | tig0022022:46591-46610 | None:intergenic | 35.0% | |
| TGACATGTGAATCATCTTTC+GGG | - | tig0022022:46661-46680 | None:intergenic | 35.0% | |
| ! | AACTTGAAGAAGGCTTTGAT+GGG | - | tig0022022:46688-46707 | None:intergenic | 35.0% |
| ! | AAACTTGAAGAAGGCTTTGA+TGG | - | tig0022022:46689-46708 | None:intergenic | 35.0% |
| !!! | TATTTTGACCCCCTATGTTT+TGG | - | tig0022022:46009-46028 | None:intergenic | 35.0% |
| ! | CGCAACTATTTGAAACATAG+GGG | + | tig0022022:47265-47284 | Msa1396360:intron | 35.0% |
| ! | GCAACTATTTGAAACATAGG+GGG | + | tig0022022:47266-47285 | Msa1396360:intron | 35.0% |
| AATAGCAGACTTAATTCACG+AGG | + | tig0022022:47456-47475 | Msa1396360:CDS | 35.0% | |
| ATAGCAGACTTAATTCACGA+GGG | + | tig0022022:47457-47476 | Msa1396360:CDS | 35.0% | |
| AAGTCTCGAAGCAAAAAGTT+TGG | + | tig0022022:47489-47508 | Msa1396360:CDS | 35.0% | |
| ! | CTATCGCCTGAATTTTCTTT+GGG | + | tig0022022:47550-47569 | Msa1396360:CDS | 35.0% |
| TTGTCTCCCAAAGAAAATTC+AGG | - | tig0022022:47559-47578 | None:intergenic | 35.0% | |
| !! | TGAATTTTCTTTGGGAGACA+AGG | + | tig0022022:47558-47577 | Msa1396360:CDS | 35.0% |
| ! | GAAGCAAAATGTTTGGTCTT+GGG | + | tig0022022:47626-47645 | Msa1396360:CDS | 35.0% |
| AGAGCACAAAGCAACAAGAA+TGG | + | tig0022022:39658-39677 | Msa1396360:five_prime_UTR | 40.0% | |
| CAACAAGAATGGAAGATACC+CGG | + | tig0022022:39669-39688 | Msa1396360:five_prime_UTR | 40.0% | |
| ! | TCTCCTCGGTTTCATTTTCA+TGG | - | tig0022022:39744-39763 | None:intergenic | 40.0% |
| GAAAATGAAACCGAGGAGAA+TGG | + | tig0022022:39745-39764 | Msa1396360:CDS | 40.0% | |
| ! | CGAGTATTTTCCATTCTCCT+CGG | - | tig0022022:39758-39777 | None:intergenic | 40.0% |
| CGAGGAGAATGGAAAATACT+CGG | + | tig0022022:39756-39775 | Msa1396360:CDS | 40.0% | |
| !! | TGGAAAATACTCGGTGCTTT+AGG | + | tig0022022:39765-39784 | Msa1396360:CDS | 40.0% |
| TACCTTCACCCCTGTAATTT+GGG | + | tig0022022:40759-40778 | Msa1396360:intron | 40.0% | |
| AATTCGCTGCCCAAATTACA+GGG | - | tig0022022:40771-40790 | None:intergenic | 40.0% | |
| AAATTCATCCCAATGGCAAG+GGG | + | tig0022022:40831-40850 | Msa1396360:intron | 40.0% | |
| !! | TGTTTTTACCCCTTGCCATT+GGG | - | tig0022022:40842-40861 | None:intergenic | 40.0% |
| !! | ATGTTTTTACCCCTTGCCAT+TGG | - | tig0022022:40843-40862 | None:intergenic | 40.0% |
| TGACATTTAGGCAAAACTCG+GGG | - | tig0022022:40909-40928 | None:intergenic | 40.0% | |
| GTGACATTTAGGCAAAACTC+GGG | - | tig0022022:40910-40929 | None:intergenic | 40.0% | |
| AAAGCTACACATACATCCCT+TGG | + | tig0022022:40982-41001 | Msa1396360:intron | 40.0% | |
| AGTAGCGGCTGAGTAAAATT+AGG | - | tig0022022:41077-41096 | None:intergenic | 40.0% | |
| TCTCACGATCACATAGTTGT+AGG | + | tig0022022:41171-41190 | Msa1396360:intron | 40.0% | |
| GAGTAGCCTGCAATTATTCT+TGG | + | tig0022022:41193-41212 | Msa1396360:intron | 40.0% | |
| ATATACTCTCCGATCACTTC+CGG | - | tig0022022:41523-41542 | None:intergenic | 40.0% | |
| !! | CTAGTATCTTGGCTTTTGCT+GGG | - | tig0022022:41605-41624 | None:intergenic | 40.0% |
| !! | ACTAGTATCTTGGCTTTTGC+TGG | - | tig0022022:41606-41625 | None:intergenic | 40.0% |
| TCATTCGGCAACTAGTATCT+TGG | - | tig0022022:41616-41635 | None:intergenic | 40.0% | |
| ! | CTAACGGTGTTAACCTTGAA+TGG | + | tig0022022:41686-41705 | Msa1396360:intron | 40.0% |
| !! | GTGAGTGTTGAACCATTATC+TGG | + | tig0022022:41996-42015 | Msa1396360:CDS | 40.0% |
| TACGCTCCAAAATTAGTCAG+GGG | - | tig0022022:42023-42042 | None:intergenic | 40.0% | |
| GTACGCTCCAAAATTAGTCA+GGG | - | tig0022022:42024-42043 | None:intergenic | 40.0% | |
| TGTACGCTCCAAAATTAGTC+AGG | - | tig0022022:42025-42044 | None:intergenic | 40.0% | |
| TGAGCTACGTGATCGAATAA+TGG | + | tig0022022:42055-42074 | Msa1396360:CDS | 40.0% | |
| !! | CACCTGTTGATTCATCAAGT+TGG | - | tig0022022:42252-42271 | None:intergenic | 40.0% |
| ! | TAGCAACAATGAGCTTTGGT+CGG | - | tig0022022:42411-42430 | None:intergenic | 40.0% |
| CAAAGCTCATTGTTGCTAGT+GGG | + | tig0022022:42413-42432 | Msa1396360:CDS | 40.0% | |
| CGAAAGATTGCAGATGAAGT+AGG | + | tig0022022:42558-42577 | Msa1396360:intron | 40.0% | |
| ! | AAAGCAAACCTTGAGGGTTT+TGG | - | tig0022022:42676-42695 | None:intergenic | 40.0% |
| AAGAATATCATACCACCTCC+TGG | - | tig0022022:42837-42856 | None:intergenic | 40.0% | |
| ATTCCAAATTTACCTCCGCA+CGG | - | tig0022022:42923-42942 | None:intergenic | 40.0% | |
| ! | TAGGGGCATGTTAGAAAGAA+AGG | - | tig0022022:42961-42980 | None:intergenic | 40.0% |
| TTCTTTCTAACATGCCCCTA+TGG | + | tig0022022:42961-42980 | Msa1396360:intron | 40.0% | |
| TAGTGTAGAACTATCTAGGG+GGG | + | tig0022022:43030-43049 | Msa1396360:intron | 40.0% | |
| !! | AGGACAAGTAGTTTGCTTCA+AGG | + | tig0022022:43074-43093 | Msa1396360:intron | 40.0% |
| ATTCCTTCATACTATCCTGC+AGG | + | tig0022022:43205-43224 | Msa1396360:intron | 40.0% | |
| ! | GGATATAAACTGGTTTCTGG+TGG | + | tig0022022:43272-43291 | Msa1396360:CDS | 40.0% |
| CCCTCCTTAATCCTTAGAAA+TGG | + | tig0022022:43402-43421 | Msa1396360:intron | 40.0% | |
| TCTGTCCCCAAAAATGCTAA+AGG | - | tig0022022:43553-43572 | None:intergenic | 40.0% | |
| !!! | ATTTTTTTTTGTGGTGGCCG+GGG | + | tig0022022:43824-43843 | Msa1396360:intron | 40.0% |
| CATAATATATGCAAGGTCCG+GGG | - | tig0022022:43856-43875 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | tig0022022:43857-43876 | None:intergenic | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+TGG | - | tig0022022:43885-43904 | None:intergenic | 40.0% |
| TCTTGTGAGCTTAACTCAGT+TGG | - | tig0022022:43890-43909 | None:intergenic | 40.0% | |
| GGTAGTGTTACAAAGTAACG+AGG | + | tig0022022:43935-43954 | Msa1396360:intron | 40.0% | |
| ! | CTCATTCTGAGAGATAAGCT+TGG | - | tig0022022:44002-44021 | None:intergenic | 40.0% |
| CTAAAGAAGGATCACATGCA+AGG | - | tig0022022:44067-44086 | None:intergenic | 40.0% | |
| CAACATTGGTGCATGTTCTT+AGG | - | tig0022022:44118-44137 | None:intergenic | 40.0% | |
| GTCAGTAGCATAAATGTGCA+AGG | + | tig0022022:44178-44197 | Msa1396360:intron | 40.0% | |
| ! | TTTTCTCACTATGAAGCTGG+AGG | - | tig0022022:44338-44357 | None:intergenic | 40.0% |
| ! | GGTTTTTCTCACTATGAAGC+TGG | - | tig0022022:44341-44360 | None:intergenic | 40.0% |
| !! | TTTGATTGTTTAGGTGCTGG+TGG | - | tig0022022:44398-44417 | None:intergenic | 40.0% |
| TAGTAGTAGACTTGAAGGTG+TGG | + | tig0022022:45281-45300 | Msa1396360:intron | 40.0% | |
| ATCGGACCTTCAAAAAAGTC+AGG | + | tig0022022:45338-45357 | Msa1396360:intron | 40.0% | |
| !!! | GACTAGCCTGACTTTTTTGA+AGG | - | tig0022022:45347-45366 | None:intergenic | 40.0% |
| ATGAGCCTATGACAGGTAAT+AGG | + | tig0022022:45374-45393 | Msa1396360:intron | 40.0% | |
| TCTGACCTATTACCTGTCAT+AGG | - | tig0022022:45382-45401 | None:intergenic | 40.0% | |
| ATAGACTTAGGGTTGGAAGT+GGG | - | tig0022022:45466-45485 | None:intergenic | 40.0% | |
| TATAGACTTAGGGTTGGAAG+TGG | - | tig0022022:45467-45486 | None:intergenic | 40.0% | |
| CGTGGAGAAAGTTATCAACA+TGG | + | tig0022022:45680-45699 | Msa1396360:intron | 40.0% | |
| GACCCCTACATAATGCAATT+CGG | - | tig0022022:45758-45777 | None:intergenic | 40.0% | |
| AAAAGAGGGCCAAAACATAG+GGG | - | tig0022022:47205-47224 | None:intergenic | 40.0% | |
| CAAAAGAGGGCCAAAACATA+GGG | - | tig0022022:47204-47223 | None:intergenic | 40.0% | |
| TCAAAAGAGGGCCAAAACAT+AGG | - | tig0022022:47203-47222 | None:intergenic | 40.0% | |
| TTGACCAGTCAATGCATATG+TGG | + | tig0022022:46053-46072 | Msa1396360:intron | 40.0% | |
| AAGAAGTCGGTAAAGAGATG+GGG | - | tig0022022:46236-46255 | None:intergenic | 40.0% | |
| GAAGAAGTCGGTAAAGAGAT+GGG | - | tig0022022:46237-46256 | None:intergenic | 40.0% | |
| AGAAGAAGTCGGTAAAGAGA+TGG | - | tig0022022:46238-46257 | None:intergenic | 40.0% | |
| ATTAACCATTCTCCCAACTC+AGG | + | tig0022022:46352-46371 | Msa1396360:intron | 40.0% | |
| GGCGAAGAAGAAATTACAAG+AGG | + | tig0022022:46424-46443 | Msa1396360:intron | 40.0% | |
| GGAAACAGTTCAAGAGAAAG+TGG | - | tig0022022:46592-46611 | None:intergenic | 40.0% | |
| GGTCAAATCGAATTGGATCA+GGG | - | tig0022022:46640-46659 | None:intergenic | 40.0% | |
| ! | TCTTTCGGGTCAAATCGAAT+TGG | - | tig0022022:46647-46666 | None:intergenic | 40.0% |
| TGACTAAGTCAACGCATATG+TGG | - | tig0022022:47172-47191 | None:intergenic | 40.0% | |
| TCAAAAGAGGGCCAAAACAT+AGG | + | tig0022022:47203-47222 | Msa1396360:intron | 40.0% | |
| CAAAAGAGGGCCAAAACATA+GGG | + | tig0022022:47204-47223 | Msa1396360:intron | 40.0% | |
| AAAAGAGGGCCAAAACATAG+GGG | + | tig0022022:47205-47224 | Msa1396360:intron | 40.0% | |
| TTTCTGACGGCATTTCCATT+GGG | + | tig0022022:47354-47373 | Msa1396360:intron | 40.0% | |
| TTTCTGACGGCATTTCCATT+GGG | + | tig0022022:47354-47373 | Msa1396360:intron | 40.0% | |
| ACAGAAGCAATGACAGTAAG+AGG | + | tig0022022:47409-47428 | Msa1396360:CDS | 40.0% | |
| GCAATGACAGTAAGAGGATT+TGG | + | tig0022022:47415-47434 | Msa1396360:CDS | 40.0% | |
| CGAAGCAAAAAGTTTGGTCT+CGG | + | tig0022022:47495-47514 | Msa1396360:CDS | 40.0% | |
| GAAGCAAAAAGTTTGGTCTC+GGG | + | tig0022022:47496-47515 | Msa1396360:CDS | 40.0% | |
| ! | GCTATCGCCTGAATTTTCTT+TGG | + | tig0022022:47549-47568 | Msa1396360:CDS | 40.0% |
| ! | CCAAACATTTTGCTTCGAGA+CGG | - | tig0022022:47622-47641 | None:intergenic | 40.0% |
| CGAAGCAAAATGTTTGGTCT+TGG | + | tig0022022:47625-47644 | Msa1396360:CDS | 40.0% | |
| !! | ATGTTTGGTCTTGGGAACTA+TGG | + | tig0022022:47634-47653 | Msa1396360:CDS | 40.0% |
| ! | AACACCTAAAGCAAAGCACC+GGG | - | tig0022022:39690-39709 | None:intergenic | 45.0% |
| CAACACCTAAAGCAAAGCAC+CGG | - | tig0022022:39691-39710 | None:intergenic | 45.0% | |
| GTACCTTCACCCCTGTAATT+TGG | + | tig0022022:40758-40777 | Msa1396360:intron | 45.0% | |
| ATTCGCTGCCCAAATTACAG+GGG | - | tig0022022:40770-40789 | None:intergenic | 45.0% | |
| GAATTCGCTGCCCAAATTAC+AGG | - | tig0022022:40772-40791 | None:intergenic | 45.0% | |
| GTAATTTGGGCAGCGAATTC+TGG | + | tig0022022:40772-40791 | Msa1396360:intron | 45.0% | |
| GACATTTAGGCAAAACTCGG+GGG | - | tig0022022:40908-40927 | None:intergenic | 45.0% | |
| TCTCACATGCTCACCACTAT+TGG | - | tig0022022:41151-41170 | None:intergenic | 45.0% | |
| !!! | AGGGGGTGTTAGTGACATTT+TGG | + | tig0022022:41753-41772 | Msa1396360:intron | 45.0% |
| TTAGTCAGGGGACCAGATAA+TGG | - | tig0022022:42011-42030 | None:intergenic | 45.0% | |
| ! | TCTGGTCCCCTGACTAATTT+TGG | + | tig0022022:42014-42033 | Msa1396360:CDS | 45.0% |
| CCACTAGCAACAATGAGCTT+TGG | - | tig0022022:42415-42434 | None:intergenic | 45.0% | |
| CCAAAGCTCATTGTTGCTAG+TGG | + | tig0022022:42412-42431 | Msa1396360:CDS | 45.0% | |
| CTCTTATAGACTGGAGGAAG+TGG | - | tig0022022:42812-42831 | None:intergenic | 45.0% | |
| CACTTCCTCCAGTCTATAAG+AGG | + | tig0022022:42810-42829 | Msa1396360:intron | 45.0% | |
| TTCAAGAAAGGTTCCGTGCA+TGG | + | tig0022022:42855-42874 | Msa1396360:CDS | 45.0% | |
| TCAAGAAAGGTTCCGTGCAT+GGG | + | tig0022022:42856-42875 | Msa1396360:CDS | 45.0% | |
| TTCCAAATTTACCTCCGCAC+GGG | - | tig0022022:42922-42941 | None:intergenic | 45.0% | |
| CTACTTGTCCTCCAATTGTG+TGG | - | tig0022022:43065-43084 | None:intergenic | 45.0% | |
| ACAAGGACTATTCTTAGGGG+TGG | + | tig0022022:43583-43602 | Msa1396360:intron | 45.0% | |
| CAAGGACTATTCTTAGGGGT+GGG | + | tig0022022:43584-43603 | Msa1396360:intron | 45.0% | |
| !!! | TTTTTTGCTAGCTTCACCGC+TGG | - | tig0022022:43628-43647 | None:intergenic | 45.0% |
| AGAATGAGAGATTCCATGCC+TGG | + | tig0022022:44014-44033 | Msa1396360:intron | 45.0% | |
| GAGTTACGTGCTATCCAGAT+AGG | - | tig0022022:44299-44318 | None:intergenic | 45.0% | |
| ! | CATGATGGAGATTGGATAGC+TGG | - | tig0022022:44362-44381 | None:intergenic | 45.0% |
| CAGCTATCCAATCTCCATCA+TGG | + | tig0022022:44360-44379 | Msa1396360:intron | 45.0% | |
| ! | TTCGCAACCATGATGGAGAT+TGG | - | tig0022022:44370-44389 | None:intergenic | 45.0% |
| GCCTATTAAGTCTATCAGGC+CGG | + | tig0022022:45114-45133 | Msa1396360:intron | 45.0% | |
| ! | GTAGACTTGAAGGTGTGGTT+AGG | + | tig0022022:45286-45305 | Msa1396360:intron | 45.0% |
| ! | TTGAAGGTGTGGTTAGGCAT+TGG | + | tig0022022:45292-45311 | Msa1396360:intron | 45.0% |
| GACAGGTAATAGGTCAGACT+CGG | + | tig0022022:45384-45403 | Msa1396360:intron | 45.0% | |
| TAGGCCTTAAAAAGCCCAGT+TGG | + | tig0022022:45435-45454 | Msa1396360:intron | 45.0% | |
| ! | TAGGCCAACTGGGCTTTTTA+AGG | - | tig0022022:45442-45461 | None:intergenic | 45.0% |
| GGAAGTTCTACAAGGACTGA+CGG | + | tig0022022:45493-45512 | Msa1396360:intron | 45.0% | |
| !! | CACATCCTTCAGGGTATTGA+TGG | + | tig0022022:45651-45670 | Msa1396360:intron | 45.0% |
| ATTGCATTATGTAGGGGTCG+AGG | + | tig0022022:45759-45778 | Msa1396360:intron | 45.0% | |
| AAAGAGGGCCAAAACATAGG+GGG | - | tig0022022:47206-47225 | None:intergenic | 45.0% | |
| TTGGATGGCGAAGAAGAAGT+CGG | - | tig0022022:46249-46268 | None:intergenic | 45.0% | |
| ! | TGTTTCCTGAGTTGGGAGAA+TGG | - | tig0022022:46360-46379 | None:intergenic | 45.0% |
| TGTGGATAGCAAAGCAGAAG+TGG | - | tig0022022:46567-46586 | None:intergenic | 45.0% | |
| GAATTGGATCAGGGTCAAGA+GGG | - | tig0022022:46631-46650 | None:intergenic | 45.0% | |
| GGGTCAAATCGAATTGGATC+AGG | - | tig0022022:46641-46660 | None:intergenic | 45.0% | |
| GTTACTGCTACGGATCGATT+CGG | + | tig0022022:46807-46826 | Msa1396360:CDS | 45.0% | |
| !! | TACGGATCGATTCGGTTAAG+AGG | + | tig0022022:46815-46834 | Msa1396360:CDS | 45.0% |
| !! | ACGGATCGATTCGGTTAAGA+GGG | + | tig0022022:46816-46835 | Msa1396360:CDS | 45.0% |
| ! | TAAGAGGGTGTGGTGGTATT+TGG | + | tig0022022:46831-46850 | Msa1396360:CDS | 45.0% |
| CGACTATGGATTCAACGAAG+AGG | + | tig0022022:46885-46904 | Msa1396360:CDS | 45.0% | |
| ! | CAATTTCTGGGTTACGGCTA+TGG | + | tig0022022:46922-46941 | Msa1396360:intron | 45.0% |
| AAAGAGGGCCAAAACATAGG+GGG | + | tig0022022:47206-47225 | Msa1396360:intron | 45.0% | |
| AAGAATGCCCTCGTTTCTGA+CGG | + | tig0022022:47341-47360 | Msa1396360:intron | 45.0% | |
| GTTTCTGACGGCATTTCCAT+TGG | + | tig0022022:47353-47372 | Msa1396360:intron | 45.0% | |
| GTTTCTGACGGCATTTCCAT+TGG | + | tig0022022:47353-47372 | Msa1396360:intron | 45.0% | |
| TGTCATTGCTTCTGTCCCAA+TGG | - | tig0022022:47404-47423 | None:intergenic | 45.0% | |
| AAGTTTGGTCTCGGGATCTA+CGG | + | tig0022022:47504-47523 | Msa1396360:CDS | 45.0% | |
| ! | AACATTTTGCTTCGAGACGG+AGG | - | tig0022022:47619-47638 | None:intergenic | 45.0% |
| CCGTCTCGAAGCAAAATGTT+TGG | + | tig0022022:47619-47638 | Msa1396360:CDS | 45.0% | |
| !! | CATAAATTAAATTAAAAATA+GGG | - | tig0022022:40349-40368 | None:intergenic | 5.0% |
| !! | ACATAAATTAAATTAAAAAT+AGG | - | tig0022022:40350-40369 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+AGG | - | tig0022022:40424-40443 | None:intergenic | 5.0% |
| !! | TATATATAAAAAAACTTAAT+AGG | - | tig0022022:45140-45159 | None:intergenic | 5.0% |
| GATACCCGGTGCTTTGCTTT+AGG | + | tig0022022:39683-39702 | Msa1396360:five_prime_UTR | 50.0% | |
| GTGTTGTGTCATGCTTCCCA+TGG | + | tig0022022:39787-39806 | Msa1396360:CDS | 50.0% | |
| TTGTGTCATGCTTCCCATGG+TGG | + | tig0022022:39790-39809 | Msa1396360:CDS | 50.0% | |
| TGCCCAAATTACAGGGGTGA+AGG | - | tig0022022:40764-40783 | None:intergenic | 50.0% | |
| ATTTAGGCAAAACTCGGGGG+AGG | - | tig0022022:40905-40924 | None:intergenic | 50.0% | |
| ! | AGGGGGTGTGAGTGACATTT+AGG | - | tig0022022:40921-40940 | None:intergenic | 50.0% |
| CAAAGGCAGGAGAAGAGTAG+CGG | - | tig0022022:41092-41111 | None:intergenic | 50.0% | |
| TGAATCAGCGAGCACAGACT+CGG | - | tig0022022:42628-42647 | None:intergenic | 50.0% | |
| !! | GCAAACCTTGAGGGTTTTGG+TGG | - | tig0022022:42673-42692 | None:intergenic | 50.0% |
| CTGGACCTCTTATAGACTGG+AGG | - | tig0022022:42818-42837 | None:intergenic | 50.0% | |
| CTCCAGTCTATAAGAGGTCC+AGG | + | tig0022022:42816-42835 | Msa1396360:intron | 50.0% | |
| CTCCTGGACCTCTTATAGAC+TGG | - | tig0022022:42821-42840 | None:intergenic | 50.0% | |
| CAGTCTATAAGAGGTCCAGG+AGG | + | tig0022022:42819-42838 | Msa1396360:intron | 50.0% | |
| TCTATAAGAGGTCCAGGAGG+TGG | + | tig0022022:42822-42841 | Msa1396360:CDS | 50.0% | |
| CAAGAAAGGTTCCGTGCATG+GGG | + | tig0022022:42857-42876 | Msa1396360:CDS | 50.0% | |
| TAATTGTTATCCCCGTGCGG+AGG | + | tig0022022:42908-42927 | Msa1396360:CDS | 50.0% | |
| TCCAAATTTACCTCCGCACG+GGG | - | tig0022022:42921-42940 | None:intergenic | 50.0% | |
| CCTCCAATTGTGTGGAGATG+CGG | - | tig0022022:43057-43076 | None:intergenic | 50.0% | |
| CCACCTGCAGGATAGTATGA+AGG | - | tig0022022:43211-43230 | None:intergenic | 50.0% | |
| CCTTCATACTATCCTGCAGG+TGG | + | tig0022022:43208-43227 | Msa1396360:intron | 50.0% | |
| TACAGTTAGCAACCACCTGC+AGG | - | tig0022022:43223-43242 | None:intergenic | 50.0% | |
| ACTATTCTTAGGGGTGGGAC+CGG | + | tig0022022:43589-43608 | Msa1396360:intron | 50.0% | |
| ATGAGAGATTCCATGCCTGG+CGG | + | tig0022022:44017-44036 | Msa1396360:intron | 50.0% | |
| ! | ATGCAAGGTGTTCTACTCGC+TGG | - | tig0022022:44052-44071 | None:intergenic | 50.0% |
| GATCACGACCATCAGTAAGC+AGG | + | tig0022022:44204-44223 | Msa1396360:intron | 50.0% | |
| GCAGTTGACCTGCTTACTGA+TGG | - | tig0022022:44215-44234 | None:intergenic | 50.0% | |
| !! | GGTGTTGTTCGCAACCATGA+TGG | - | tig0022022:44377-44396 | None:intergenic | 50.0% |
| ACTAGGCTATAGGCCACTGT+CGG | - | tig0022022:44989-45008 | None:intergenic | 50.0% | |
| GCCGGCCTGATAGACTTAAT+AGG | - | tig0022022:45118-45137 | None:intergenic | 50.0% | |
| ! | CTTAGGGTTGGAAGTGGGTT+AGG | - | tig0022022:45461-45480 | None:intergenic | 50.0% |
| GAGCTCCATCAATACCCTGA+AGG | - | tig0022022:45659-45678 | None:intergenic | 50.0% | |
| ! | GCTGCCACATATGCATTGAC+TGG | - | tig0022022:46060-46079 | None:intergenic | 50.0% |
| AAGTCGGTAAAGAGATGGGG+AGG | - | tig0022022:46233-46252 | None:intergenic | 50.0% | |
| GTTCAAGAGAAAGTGGGGTG+TGG | - | tig0022022:46585-46604 | None:intergenic | 50.0% | |
| ATCAGGGTCAAGAGGGATTG+CGG | - | tig0022022:46624-46643 | None:intergenic | 50.0% | |
| CGAATTGGATCAGGGTCAAG+AGG | - | tig0022022:46632-46651 | None:intergenic | 50.0% | |
| !! | TCGATTCGGTTAAGAGGGTG+TGG | + | tig0022022:46821-46840 | Msa1396360:CDS | 50.0% |
| ! | ATTCGGTTAAGAGGGTGTGG+TGG | + | tig0022022:46824-46843 | Msa1396360:CDS | 50.0% |
| TGGTATTTGGTCTGGATCGC+AGG | + | tig0022022:46844-46863 | Msa1396360:CDS | 50.0% | |
| TGGATCGCAGGTTGTTTGTG+TGG | + | tig0022022:46856-46875 | Msa1396360:CDS | 50.0% | |
| GGATCGCAGGTTGTTTGTGT+GGG | + | tig0022022:46857-46876 | Msa1396360:CDS | 50.0% | |
| GATCGCAGGTTGTTTGTGTG+GGG | + | tig0022022:46858-46877 | Msa1396360:CDS | 50.0% | |
| ATCGCAGGTTGTTTGTGTGG+GGG | + | tig0022022:46859-46878 | Msa1396360:CDS | 50.0% | |
| GGAAATGCCGTCAGAAACGA+GGG | - | tig0022022:47351-47370 | None:intergenic | 50.0% | |
| TGGAAATGCCGTCAGAAACG+AGG | - | tig0022022:47352-47371 | None:intergenic | 50.0% | |
| CAGAAACGCTTCTGTCCCAA+TGG | - | tig0022022:47372-47391 | None:intergenic | 50.0% | |
| !! | TGGGACAGAAGCGTTTCTGA+CGG | + | tig0022022:47373-47392 | Msa1396360:intron | 50.0% |
| ! | TGCTTCCCATGGTGGAAGAG+AGG | + | tig0022022:39798-39817 | Msa1396360:CDS | 55.0% |
| TTCTCCTGCCTTTGCAGCTG+TGG | + | tig0022022:41098-41117 | Msa1396360:CDS | 55.0% | |
| ! | TTGGAGCACCACAGCTGCAA+AGG | - | tig0022022:41109-41128 | None:intergenic | 55.0% |
| TTTGCAGCTGTGGTGCTCCA+AGG | + | tig0022022:41108-41127 | Msa1396360:CDS | 55.0% | |
| TGTGGCCACCAAAACCCTCA+AGG | + | tig0022022:42665-42684 | Msa1396360:CDS | 55.0% | |
| TCCCCGTGCGGAGGTAAATT+TGG | + | tig0022022:42917-42936 | Msa1396360:intron | 55.0% | |
| GGTCCGCATCTCCACACAAT+TGG | + | tig0022022:43051-43070 | Msa1396360:intron | 55.0% | |
| CCGCATCTCCACACAATTGG+AGG | + | tig0022022:43054-43073 | Msa1396360:intron | 55.0% | |
| CTATTCTTAGGGGTGGGACC+GGG | + | tig0022022:43590-43609 | Msa1396360:intron | 55.0% | |
| ! | TTGCTAGCTTCACCGCTGGT+CGG | - | tig0022022:43624-43643 | None:intergenic | 55.0% |
| CGCAACCTTTCCTTGCCATG+GGG | - | tig0022022:44957-44976 | None:intergenic | 55.0% | |
| CCGCAACCTTTCCTTGCCAT+GGG | - | tig0022022:44958-44977 | None:intergenic | 55.0% | |
| CCCATGGCAAGGAAAGGTTG+CGG | + | tig0022022:44955-44974 | Msa1396360:intron | 55.0% | |
| !! | GGAAGTGGGTTAGGCCAACT+GGG | - | tig0022022:45452-45471 | None:intergenic | 55.0% |
| !! | TGGAAGTGGGTTAGGCCAAC+TGG | - | tig0022022:45453-45472 | None:intergenic | 55.0% |
| !! | GGGTATTGATGGAGCTCTCG+TGG | + | tig0022022:45662-45681 | Msa1396360:intron | 55.0% |
| AGGGGTCGAGGTTCAAACCT+CGG | + | tig0022022:45771-45790 | Msa1396360:intron | 55.0% | |
| GGTGTTCCCTGTCAGCGAAT+GGG | + | tig0022022:46499-46518 | Msa1396360:CDS | 55.0% | |
| CTTCCACCCATTCGCTGACA+GGG | - | tig0022022:46508-46527 | None:intergenic | 55.0% | |
| TCTTCCACCCATTCGCTGAC+AGG | - | tig0022022:46509-46528 | None:intergenic | 55.0% | |
| GTCAGCGAATGGGTGGAAGA+TGG | + | tig0022022:46509-46528 | Msa1396360:CDS | 55.0% | |
| GGGTGTGGTGGTATTTGGTC+TGG | + | tig0022022:46836-46855 | Msa1396360:CDS | 55.0% | |
| TCGCAGGTTGTTTGTGTGGG+GGG | + | tig0022022:46860-46879 | Msa1396360:CDS | 55.0% | |
| ! | TTGTGTGGGGGGTACGACTA+TGG | + | tig0022022:46871-46890 | Msa1396360:CDS | 55.0% |
| CCACGCCTCTCTTCCACCAT+GGG | - | tig0022022:39806-39825 | None:intergenic | 60.0% | |
| ! | CCATGGTGGAAGAGAGGCGT+GGG | + | tig0022022:39804-39823 | Msa1396360:CDS | 60.0% |
| AGCACCACAGCTGCAAAGGC+AGG | - | tig0022022:41105-41124 | None:intergenic | 60.0% | |
| TTCCGTGCATGGGGTCGATC+TGG | + | tig0022022:42866-42885 | Msa1396360:CDS | 60.0% | |
| CTCCAGATCGACCCCATGCA+CGG | - | tig0022022:42871-42890 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | - | tig0022022:43844-43863 | None:intergenic | 60.0% | |
| AGAGATTCCATGCCTGGCGG+AGG | + | tig0022022:44020-44039 | Msa1396360:intron | 60.0% | |
| GAGATTCCATGCCTGGCGGA+GGG | + | tig0022022:44021-44040 | Msa1396360:intron | 60.0% | |
| TCCTTGCCATGGGGTAGCCT+TGG | - | tig0022022:44948-44967 | None:intergenic | 60.0% | |
| GGCTACCCCATGGCAAGGAA+AGG | + | tig0022022:44949-44968 | Msa1396360:intron | 60.0% | |
| GCCGCAACCTTTCCTTGCCA+TGG | - | tig0022022:44959-44978 | None:intergenic | 60.0% | |
| TGCGGCTCTATGTCCGACAG+TGG | + | tig0022022:44973-44992 | Msa1396360:intron | 60.0% | |
| GGGTGTTCCCTGTCAGCGAA+TGG | + | tig0022022:46498-46517 | Msa1396360:CDS | 60.0% | |
| GTTCCCTGTCAGCGAATGGG+TGG | + | tig0022022:46502-46521 | Msa1396360:CDS | 60.0% | |
| ! | CCCATGGTGGAAGAGAGGCG+TGG | + | tig0022022:39803-39822 | Msa1396360:CDS | 65.0% |
| CCCACGCCTCTCTTCCACCA+TGG | - | tig0022022:39807-39826 | None:intergenic | 65.0% | |
| GGGTAGCCAAGGCTACCCCA+TGG | + | tig0022022:44939-44958 | Msa1396360:intron | 65.0% | |
| GCCAAGGCTACCCCATGGCA+AGG | + | tig0022022:44944-44963 | Msa1396360:intron | 65.0% | |
| GAGGGATTGCGGCGACAGTG+AGG | - | tig0022022:46613-46632 | None:intergenic | 65.0% | |
| CTTAGGGGTGGGACCGGGTC+AGG | + | tig0022022:43595-43614 | Msa1396360:intron | 70.0% | |
| CGCTGGTCGGACACCTGACC+CGG | - | tig0022022:43611-43630 | None:intergenic | 70.0% | |
| CGGGTCAGGTGTCCGACCAG+CGG | + | tig0022022:43609-43628 | Msa1396360:intron | 70.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | + | tig0022022:43836-43855 | Msa1396360:intron | 70.0% | |
| GAACTGCCCTCCGCCAGGCA+TGG | - | tig0022022:44030-44049 | None:intergenic | 70.0% | |
| CGCTGGAACTGCCCTCCGCC+AGG | - | tig0022022:44035-44054 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022022 | gene | 39658 | 47696 | 39658 | ID=Msa1396360;Name=Msa1396360 |
| tig0022022 | mRNA | 39658 | 47696 | 39658 | ID=Msa1396360-mRNA-1;Parent=Msa1396360;Name=Msa1396360-mRNA-1;_AED=0.31;_eAED=0.32;_QI=85|0.11|0.1|0.8|1|1|10|0|562 |
| tig0022022 | exon | 39658 | 39858 | 39658 | ID=Msa1396360-mRNA-1:exon:15473;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 41089 | 41129 | 41089 | ID=Msa1396360-mRNA-1:exon:15474;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 41880 | 42076 | 41880 | ID=Msa1396360-mRNA-1:exon:15475;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 42178 | 42268 | 42178 | ID=Msa1396360-mRNA-1:exon:15476;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 42365 | 42471 | 42365 | ID=Msa1396360-mRNA-1:exon:15477;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 42564 | 42686 | 42564 | ID=Msa1396360-mRNA-1:exon:15478;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 42822 | 42929 | 42822 | ID=Msa1396360-mRNA-1:exon:15479;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 43227 | 43334 | 43227 | ID=Msa1396360-mRNA-1:exon:15480;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 46425 | 46906 | 46425 | ID=Msa1396360-mRNA-1:exon:15481;Parent=Msa1396360-mRNA-1 |
| tig0022022 | exon | 47381 | 47696 | 47381 | ID=Msa1396360-mRNA-1:exon:15482;Parent=Msa1396360-mRNA-1 |
| tig0022022 | five_prime_UTR | 39658 | 39742 | 39658 | ID=Msa1396360-mRNA-1:five_prime_utr;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 39743 | 39858 | 39743 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 41089 | 41129 | 41089 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 41880 | 42076 | 41880 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 42178 | 42268 | 42178 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 42365 | 42471 | 42365 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 42564 | 42686 | 42564 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 42822 | 42929 | 42822 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 43227 | 43334 | 43227 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 46425 | 46906 | 46425 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| tig0022022 | CDS | 47381 | 47696 | 47381 | ID=Msa1396360-mRNA-1:cds;Parent=Msa1396360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
