Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852720 | PNX85476.1 | 59.016 | 427 | 139 | 9 | 86 | 494 | 1 | 409 | 4.60e-159 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852720 | sp|Q9M2N5|DSLE_ARATH | 35.747 | 221 | 133 | 3 | 269 | 488 | 462 | 674 | 1.87e-39 | 155 |
| Msa0852720 | sp|Q9M2N5|DSLE_ARATH | 29.515 | 227 | 140 | 7 | 54 | 261 | 42 | 267 | 8.76e-22 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852720 | A0A2K3M3W2 | 59.016 | 427 | 139 | 9 | 86 | 494 | 1 | 409 | 2.20e-159 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0651930 | Msa0852720 | 0.803132 | 4.033455e-49 | -8.615850e-47 |
| Msa0699190 | Msa0852720 | 0.815119 | 1.088215e-51 | -8.615850e-47 |
| Msa0794050 | Msa0852720 | 0.847738 | 9.564332e-60 | -8.615850e-47 |
| Msa0206690 | Msa0852720 | 0.804718 | 1.887886e-49 | -8.615850e-47 |
| Msa0249580 | Msa0852720 | 0.800363 | 1.492822e-48 | -8.615850e-47 |
| Msa0483120 | Msa0852720 | 0.809894 | 1.510241e-50 | -8.615850e-47 |
| Msa0852720 | Msa0944200 | 0.811409 | 7.101630e-51 | -8.615850e-47 |
| Msa0852720 | Msa0990550 | 0.811209 | 7.850780e-51 | -8.615850e-47 |
| Msa0852720 | Msa1096620 | 0.813511 | 2.466674e-51 | -8.615850e-47 |
| Msa0852720 | Msa1155150 | 0.817101 | 3.926220e-52 | -8.615850e-47 |
| Msa0852720 | Msa1165780 | 0.806399 | 8.382270e-50 | -8.615850e-47 |
| Msa0852720 | Msa1396360 | 0.800429 | 1.447072e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852720 | MtrunA17_Chr8g0359341 | 37.611 | 226 | 133 | 2 | 269 | 488 | 483 | 706 | 2.38e-44 | 167 |
| Msa0852720 | MtrunA17_Chr8g0359341 | 29.150 | 247 | 139 | 7 | 74 | 287 | 69 | 312 | 1.03e-24 | 108 |
| Msa0852720 | MtrunA17_Chr7g0263231 | 36.325 | 234 | 132 | 2 | 269 | 488 | 838 | 1068 | 1.42e-43 | 166 |
| Msa0852720 | MtrunA17_Chr7g0263231 | 32.812 | 256 | 132 | 8 | 62 | 287 | 423 | 668 | 7.20e-29 | 121 |
| Msa0852720 | MtrunA17_Chr7g0263261 | 36.087 | 230 | 130 | 2 | 273 | 488 | 783 | 1009 | 8.64e-42 | 160 |
| Msa0852720 | MtrunA17_Chr7g0263261 | 31.418 | 261 | 129 | 8 | 62 | 287 | 364 | 609 | 8.02e-28 | 118 |
| Msa0852720 | MtrunA17_Chr4g0053391 | 36.287 | 237 | 142 | 3 | 269 | 497 | 22 | 257 | 4.31e-38 | 141 |
| Msa0852720 | MtrunA17_Chr2g0308821 | 31.535 | 241 | 147 | 3 | 269 | 494 | 427 | 664 | 2.23e-37 | 146 |
| Msa0852720 | MtrunA17_Chr2g0308821 | 32.589 | 224 | 118 | 4 | 72 | 263 | 11 | 233 | 1.01e-27 | 117 |
| Msa0852720 | MtrunA17_Chr2g0333261 | 31.225 | 253 | 151 | 4 | 268 | 501 | 443 | 691 | 3.41e-36 | 143 |
| Msa0852720 | MtrunA17_Chr2g0333261 | 32.787 | 244 | 138 | 6 | 43 | 261 | 6 | 248 | 6.66e-26 | 112 |
| Msa0852720 | MtrunA17_Chr4g0052611 | 35.897 | 234 | 137 | 6 | 289 | 515 | 3 | 230 | 6.85e-36 | 134 |
| Msa0852720 | MtrunA17_Chr5g0408131 | 38.537 | 205 | 103 | 4 | 298 | 488 | 23 | 218 | 1.58e-33 | 127 |
| Msa0852720 | MtrunA17_Chr4g0003151 | 29.289 | 239 | 150 | 2 | 267 | 488 | 423 | 659 | 3.27e-33 | 134 |
| Msa0852720 | MtrunA17_Chr4g0003151 | 28.016 | 257 | 148 | 8 | 56 | 287 | 10 | 254 | 6.26e-22 | 99.8 |
| Msa0852720 | MtrunA17_Chr5g0402891 | 35.111 | 225 | 129 | 5 | 277 | 488 | 358 | 578 | 1.96e-30 | 125 |
| Msa0852720 | MtrunA17_Chr5g0402891 | 33.333 | 153 | 94 | 4 | 114 | 263 | 1 | 148 | 1.78e-16 | 82.8 |
| Msa0852720 | MtrunA17_Chr8g0354631 | 31.301 | 246 | 144 | 6 | 265 | 488 | 460 | 702 | 3.73e-29 | 122 |
| Msa0852720 | MtrunA17_Chr8g0354631 | 29.167 | 240 | 163 | 6 | 31 | 265 | 28 | 265 | 8.12e-25 | 108 |
| Msa0852720 | MtrunA17_Chr4g0052681 | 29.412 | 238 | 149 | 3 | 269 | 490 | 326 | 560 | 9.52e-28 | 117 |
| Msa0852720 | MtrunA17_Chr4g0052681 | 26.984 | 126 | 87 | 3 | 163 | 287 | 33 | 154 | 9.30e-12 | 67.8 |
| Msa0852720 | MtrunA17_Chr8g0383041 | 29.412 | 238 | 154 | 3 | 269 | 494 | 326 | 561 | 2.00e-26 | 113 |
| Msa0852720 | MtrunA17_Chr8g0383081 | 25.188 | 266 | 168 | 4 | 269 | 516 | 323 | 575 | 2.16e-25 | 110 |
| Msa0852720 | MtrunA17_Chr8g0383211 | 32.895 | 228 | 141 | 6 | 269 | 488 | 412 | 635 | 7.73e-25 | 108 |
| Msa0852720 | MtrunA17_Chr8g0383211 | 23.684 | 190 | 129 | 2 | 75 | 263 | 35 | 209 | 1.73e-13 | 73.2 |
| Msa0852720 | MtrunA17_Chr4g0052601 | 30.876 | 217 | 142 | 6 | 48 | 263 | 7 | 216 | 1.92e-22 | 99.8 |
| Msa0852720 | MtrunA17_Chr8g0383171 | 36.364 | 176 | 95 | 5 | 325 | 489 | 63 | 232 | 5.92e-21 | 92.8 |
| Msa0852720 | MtrunA17_Chr8g0383061 | 31.707 | 205 | 122 | 6 | 298 | 490 | 1 | 199 | 1.24e-20 | 90.9 |
| Msa0852720 | MtrunA17_Chr3g0108001 | 43.023 | 86 | 49 | 0 | 416 | 501 | 1 | 86 | 1.53e-16 | 75.5 |
| Msa0852720 | MtrunA17_Chr8g0390371 | 46.835 | 79 | 41 | 1 | 419 | 496 | 8 | 86 | 7.47e-16 | 72.8 |
| Msa0852720 | MtrunA17_Chr4g0062411 | 27.103 | 214 | 133 | 8 | 278 | 488 | 456 | 649 | 1.23e-13 | 73.6 |
| Msa0852720 | MtrunA17_Chr8g0383181 | 23.711 | 194 | 125 | 6 | 75 | 263 | 25 | 200 | 3.68e-13 | 70.5 |
| Msa0852720 | MtrunA17_Chr1g0162951 | 47.368 | 57 | 30 | 0 | 441 | 497 | 1 | 57 | 5.25e-11 | 58.2 |
| Msa0852720 | MtrunA17_Chr7g0258601 | 36.296 | 135 | 63 | 7 | 31 | 159 | 15 | 132 | 6.33e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852720 | AT3G42170.2 | 35.747 | 221 | 133 | 3 | 269 | 488 | 440 | 652 | 1.86e-40 | 155 |
| Msa0852720 | AT3G42170.2 | 29.515 | 227 | 140 | 7 | 54 | 261 | 20 | 245 | 9.62e-23 | 102 |
| Msa0852720 | AT3G42170.1 | 35.747 | 221 | 133 | 3 | 269 | 488 | 462 | 674 | 1.90e-40 | 155 |
| Msa0852720 | AT3G42170.1 | 29.515 | 227 | 140 | 7 | 54 | 261 | 42 | 267 | 8.90e-23 | 102 |
| Msa0852720 | AT1G18560.1 | 26.829 | 205 | 121 | 7 | 295 | 488 | 463 | 649 | 2.19e-11 | 67.0 |
Find 119 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACGAAGCTTAAAGTTAA+TGG | 0.121499 | 5_4:+43946773 | Msa0852720:CDS |
| TTCAGCTTCACTCTTCAAAA+TGG | 0.177755 | 5_4:-43948394 | None:intergenic |
| CATTTCTTTAATCAAATTAT+TGG | 0.241200 | 5_4:-43947492 | None:intergenic |
| AACGGAGTTGGATCATTATC+TGG | 0.259746 | 5_4:+43947832 | Msa0852720:CDS |
| CAAGAAGTTTCTTGCAATAA+TGG | 0.264840 | 5_4:-43946814 | None:intergenic |
| CATTATTGCAAGAAACTTCT+TGG | 0.265382 | 5_4:+43946815 | Msa0852720:CDS |
| CATGAGAACAAGAAAGTTAA+AGG | 0.271092 | 5_4:+43946905 | Msa0852720:CDS |
| TGCAGAAATTTGATAAATAT+TGG | 0.280085 | 5_4:+43947528 | Msa0852720:CDS |
| ATTACTTGTTAGGTTCAAAT+TGG | 0.282522 | 5_4:+43947394 | Msa0852720:intron |
| CCACATCAGAATATCAAAAT+TGG | 0.289304 | 5_4:-43947879 | None:intergenic |
| CGAGATTTGTAAGATCAAAT+TGG | 0.290931 | 5_4:+43947445 | Msa0852720:CDS |
| TTTGGATCCAAGATACAAAA+TGG | 0.298966 | 5_4:+43947586 | Msa0852720:CDS |
| GTTTCGATACTTTGGATCAT+AGG | 0.300696 | 5_4:+43948525 | Msa0852720:three_prime_UTR |
| ACAATGATGTGGTTTGAATT+TGG | 0.300883 | 5_4:+43948495 | Msa0852720:three_prime_UTR |
| TGTTTGCAGGTAATTCAAAA+AGG | 0.310485 | 5_4:+43945935 | Msa0852720:intron |
| TTCCTAAGTCTTTCTTTCCT+TGG | 0.314125 | 5_4:-43946952 | None:intergenic |
| GATGGGAGTTGCTACTGTTT+TGG | 0.320873 | 5_4:+43947568 | Msa0852720:CDS |
| TCTTTCTTTCCTTGGCCCTT+TGG | 0.321490 | 5_4:-43946944 | None:intergenic |
| TCAGAAGCTACTGAAGTAAT+AGG | 0.323940 | 5_4:-43947965 | None:intergenic |
| AAAACACTTGCTTCATCATA+TGG | 0.325245 | 5_4:+43946859 | Msa0852720:CDS |
| CACATTATATTGATGGATCT+TGG | 0.325892 | 5_4:+43947266 | Msa0852720:CDS |
| CAATAATTTGATTAAAGAAA+TGG | 0.336226 | 5_4:+43947493 | Msa0852720:CDS |
| ATATCAAAATTGGCACTTCT+AGG | 0.340733 | 5_4:-43947869 | None:intergenic |
| GGTGCTTCTAATGTTTCATT+TGG | 0.377507 | 5_4:-43946671 | None:intergenic |
| GTTACTGCACATTATATTGA+TGG | 0.379284 | 5_4:+43947259 | Msa0852720:CDS |
| CAATTTGATCTTACAAATCT+CGG | 0.381654 | 5_4:-43947444 | None:intergenic |
| TTTGCAATTTCTTGCAATGT+TGG | 0.382104 | 5_4:-43947926 | None:intergenic |
| AAACATGTCTAACACAGAAT+TGG | 0.383094 | 5_4:+43945971 | Msa0852720:exon |
| GAATGAAATGATCTAGATCT+AGG | 0.389547 | 5_4:-43945725 | None:intergenic |
| AATTCTGTGTTAGACATGTT+TGG | 0.400398 | 5_4:-43945969 | None:intergenic |
| GCTATGTTGTTTCGATACTT+TGG | 0.407631 | 5_4:+43948517 | Msa0852720:three_prime_UTR |
| TTATCATCTGTGATATCAAT+AGG | 0.408739 | 5_4:-43946692 | None:intergenic |
| CTTATAATGCTGAAAATTCA+AGG | 0.408763 | 5_4:+43946981 | Msa0852720:CDS |
| GAACTTGAAACAATGGTTGC+AGG | 0.411344 | 5_4:-43947087 | None:intergenic |
| CTTGGTGGAAAATCAACTAA+TGG | 0.416784 | 5_4:+43946833 | Msa0852720:CDS |
| ACAGAAGCATTGGCAGAAAC+AGG | 0.417435 | 5_4:+43946716 | Msa0852720:CDS |
| AAGATCTTACATTCATCATC+AGG | 0.417940 | 5_4:-43948265 | None:intergenic |
| GAGAGAGAAGTGCCGTCGGC+TGG | 0.432319 | 5_4:-43945755 | None:intergenic |
| TCAGCTTCACTCTTCAAAAT+GGG | 0.432393 | 5_4:-43948393 | None:intergenic |
| CGCAGTGCTGCTTACAAAGC+TGG | 0.437310 | 5_4:+43945779 | Msa0852720:five_prime_UTR |
| AGAAGTGCCGTCGGCTGGAG+TGG | 0.437328 | 5_4:-43945750 | None:intergenic |
| GCTTCTAATGTTTCATTTGG+TGG | 0.440855 | 5_4:-43946668 | None:intergenic |
| CTGAAGATGTAGGTAGCATC+TGG | 0.448119 | 5_4:+43948412 | Msa0852720:three_prime_UTR |
| TATTGATGAATGTGATCTTA+AGG | 0.450478 | 5_4:+43948586 | Msa0852720:three_prime_UTR |
| TTTGGGACAGCTTTGAGTGT+TGG | 0.451356 | 5_4:+43948675 | Msa0852720:three_prime_UTR |
| TAGCAACTCCCATCATATCC+TGG | 0.454437 | 5_4:-43947559 | None:intergenic |
| GCTAATTCTGTGGCTAATGA+TGG | 0.459373 | 5_4:+43947749 | Msa0852720:CDS |
| CGCATCGTAGTCGACTTCAT+TGG | 0.461536 | 5_4:+43948023 | Msa0852720:CDS |
| TAGTCTGGCCAGTAGTAGTT+TGG | 0.463178 | 5_4:-43946607 | None:intergenic |
| TGTTTGATAGTCTTCAATCA+AGG | 0.463299 | 5_4:+43947179 | Msa0852720:CDS |
| CTATGGAGCAAGGAGAATAA+TGG | 0.470206 | 5_4:+43948082 | Msa0852720:CDS |
| TCAAATTGGCAATATCTGAT+TGG | 0.473321 | 5_4:+43947459 | Msa0852720:CDS |
| ACTCTGTTGAGCAAGTTAAG+AGG | 0.474739 | 5_4:+43947648 | Msa0852720:CDS |
| ATGAGAACAAGAAAGTTAAA+GGG | 0.475041 | 5_4:+43946906 | Msa0852720:CDS |
| TTCTTGATGGTGTTTCTACA+AGG | 0.475367 | 5_4:-43947109 | None:intergenic |
| GAGTGTCACCCAGGATATGA+TGG | 0.476745 | 5_4:+43947550 | Msa0852720:CDS |
| GGATAATGTTGGTAATTCTC+AGG | 0.478704 | 5_4:+43946556 | Msa0852720:CDS |
| AATTTGATCTTACAAATCTC+GGG | 0.487617 | 5_4:-43947443 | None:intergenic |
| GCAGACGTCGGAGTAAGGTA+TGG | 0.492817 | 5_4:+43946744 | Msa0852720:CDS |
| TAAAGTTAATGGAGAAGATA+AGG | 0.493123 | 5_4:+43946784 | Msa0852720:CDS |
| TAGAACATCATTATATAAAA+CGG | 0.495038 | 5_4:+43947814 | Msa0852720:CDS |
| TAAAGAAATGGCTACGAAGA+TGG | 0.497673 | 5_4:+43947505 | Msa0852720:CDS |
| TGGTGGTGGTTGAGATGATG+AGG | 0.497919 | 5_4:-43946651 | None:intergenic |
| ACATGATCAACAATTGAAAG+TGG | 0.498160 | 5_4:-43947040 | None:intergenic |
| TAACAGCAGACGTCGGAGTA+AGG | 0.498518 | 5_4:+43946739 | Msa0852720:CDS |
| ATCATTATATAAAACGGAGT+TGG | 0.499119 | 5_4:+43947820 | Msa0852720:CDS |
| ATTATGATGCATATGTCAAA+AGG | 0.500853 | 5_4:+43947780 | Msa0852720:CDS |
| TTCTTTAATCAAATTATTGG+AGG | 0.501683 | 5_4:-43947489 | None:intergenic |
| CTAGCTGTTGTGCTGACTTG+TGG | 0.502842 | 5_4:+43948703 | Msa0852720:three_prime_UTR |
| GGTGGTGGTTGAGATGATGA+GGG | 0.510366 | 5_4:-43946650 | None:intergenic |
| GCAAACATTTCTTGTGCCAA+AGG | 0.510709 | 5_4:+43946928 | Msa0852720:CDS |
| AAGAGTGAAGCTGAAGATGT+AGG | 0.513597 | 5_4:+43948402 | Msa0852720:exon |
| CTTTGATGTGTGCTAGAAGT+TGG | 0.519354 | 5_4:+43948059 | Msa0852720:CDS |
| ACTTCATTGGACAACCTTGG+AGG | 0.521822 | 5_4:+43948036 | Msa0852720:CDS |
| ACATCAGACATGTGGACCTC+AGG | 0.522328 | 5_4:+43947211 | Msa0852720:CDS |
| TCTAATGTTTCATTTGGTGG+TGG | 0.528703 | 5_4:-43946665 | None:intergenic |
| TATTGCAAGAAACTTCTTGG+TGG | 0.530813 | 5_4:+43946818 | Msa0852720:CDS |
| CAAACATTTCTTGTGCCAAA+GGG | 0.534415 | 5_4:+43946929 | Msa0852720:CDS |
| CTACAAGGAACTTGAAACAA+TGG | 0.534720 | 5_4:-43947094 | None:intergenic |
| AGTGCACACCAAACTACTAC+TGG | 0.535841 | 5_4:+43946599 | Msa0852720:CDS |
| GAATCAGCATTCAGTACAAG+TGG | 0.537506 | 5_4:+43947986 | Msa0852720:CDS |
| AGATGATAATACAGAAGCAT+TGG | 0.539940 | 5_4:+43946706 | Msa0852720:CDS |
| TCGACTTCATTGGACAACCT+TGG | 0.544964 | 5_4:+43948033 | Msa0852720:CDS |
| GTTTGATAGTCTTCAATCAA+GGG | 0.547183 | 5_4:+43947180 | Msa0852720:CDS |
| ACTACTGGCCAGACTACTAC+TGG | 0.548115 | 5_4:+43946614 | Msa0852720:CDS |
| AGCAACTCCCATCATATCCT+GGG | 0.551068 | 5_4:-43947558 | None:intergenic |
| GGCCAAGGAAAGAAAGACTT+AGG | 0.554198 | 5_4:+43946950 | Msa0852720:CDS |
| TAAAAGTGTATGAGTTTGAG+AGG | 0.558698 | 5_4:+43947140 | Msa0852720:CDS |
| AATGAAATGATCTAGATCTA+GGG | 0.563719 | 5_4:-43945724 | None:intergenic |
| TAAATATTGGAGTGTCACCC+AGG | 0.565226 | 5_4:+43947541 | Msa0852720:CDS |
| GGTCCACATGTCTGATGTAA+TGG | 0.568531 | 5_4:-43947206 | None:intergenic |
| ACGGAGTTGGATCATTATCT+GGG | 0.571432 | 5_4:+43947833 | Msa0852720:CDS |
| TTCATGCATAATTATTGCAG+AGG | 0.572651 | 5_4:-43947014 | None:intergenic |
| AACTTGAAACAATGGTTGCA+GGG | 0.576340 | 5_4:-43947086 | None:intergenic |
| CTGATGTGGTGGAAGTTGAA+TGG | 0.578791 | 5_4:+43947893 | Msa0852720:CDS |
| ATTTACAGAGTCGCATCTTG+AGG | 0.580131 | 5_4:+43947290 | Msa0852720:CDS |
| GTGGTGGTTGAGATGATGAG+GGG | 0.582337 | 5_4:-43946649 | None:intergenic |
| AGTGCCGTCGGCTGGAGTGG+AGG | 0.584759 | 5_4:-43945747 | None:intergenic |
| CAGACGTCGGAGTAAGGTAT+GGG | 0.586849 | 5_4:+43946745 | Msa0852720:CDS |
| TTGTAGAAACACCATCAAGA+AGG | 0.587393 | 5_4:+43947111 | Msa0852720:CDS |
| CATTCCTCCACTCCAGCCGA+CGG | 0.592524 | 5_4:+43945743 | Msa0852720:five_prime_UTR |
| TTTCTTGTGCCAAAGGGCCA+AGG | 0.594776 | 5_4:+43946935 | Msa0852720:CDS |
| AAGTTCAATCAAGACACTTG+TGG | 0.595420 | 5_4:+43947713 | Msa0852720:CDS |
| TAGAAGTTGGCTATGGAGCA+AGG | 0.597997 | 5_4:+43948072 | Msa0852720:CDS |
| AGACACTTGTGGTGAATCGT+CGG | 0.609844 | 5_4:+43947724 | Msa0852720:CDS |
| GAAATGGACATGGATAATGT+TGG | 0.622790 | 5_4:+43946545 | Msa0852720:CDS |
| AACTCAACAGGAAATGGACA+TGG | 0.624712 | 5_4:+43946535 | Msa0852720:intron |
| AGTGTCACCCAGGATATGAT+GGG | 0.628166 | 5_4:+43947551 | Msa0852720:CDS |
| AGCACACATCAAAGCCTCCA+AGG | 0.630649 | 5_4:-43948050 | None:intergenic |
| TGGTGGTTGAGATGATGAGG+GGG | 0.630967 | 5_4:-43946648 | None:intergenic |
| TGTGTGCTAGAAGTTGGCTA+TGG | 0.638996 | 5_4:+43948065 | Msa0852720:CDS |
| ATAGGTGAAATATTGACTAG+TGG | 0.646439 | 5_4:+43948362 | Msa0852720:intron |
| TGATAGTCTTCAATCAAGGG+TGG | 0.654543 | 5_4:+43947183 | Msa0852720:CDS |
| GCGTGAGAGAGAAGTGCCGT+CGG | 0.655415 | 5_4:-43945759 | None:intergenic |
| TGTGATCTTAAGGAATGATG+TGG | 0.673835 | 5_4:+43948596 | Msa0852720:three_prime_UTR |
| TGGCCATTACATCAGACATG+TGG | 0.677334 | 5_4:+43947203 | Msa0852720:CDS |
| ATCGTCGGAAGCTAATTCTG+TGG | 0.696219 | 5_4:+43947739 | Msa0852720:CDS |
| CAATGAAGTCGACTACGATG+CGG | 0.735270 | 5_4:-43948022 | None:intergenic |
| AAACAGGTAACAGCAGACGT+CGG | 0.756698 | 5_4:+43946732 | Msa0852720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATACATTAATTATTTCA+TGG | + | chr5_4:43946288-43946307 | Msa0852720:intron | 10.0% |
| !! | ATATACATTAATTATTTCAT+GGG | + | chr5_4:43946289-43946308 | Msa0852720:intron | 10.0% |
| !!! | ACTTGTATTTTTTATTATAT+AGG | + | chr5_4:43948344-43948363 | Msa0852720:intron | 10.0% |
| !! | ATTGATAAATGAAGATAAAA+AGG | - | chr5_4:43945844-43945863 | None:intergenic | 15.0% |
| !!! | ACACAATTTTATTACATATT+TGG | + | chr5_4:43946038-43946057 | Msa0852720:intron | 15.0% |
| !! | TATACATTAATTATTTCATG+GGG | + | chr5_4:43946290-43946309 | Msa0852720:intron | 15.0% |
| !! | CATTTCTTTAATCAAATTAT+TGG | - | chr5_4:43947495-43947514 | None:intergenic | 15.0% |
| !! | CAATAATTTGATTAAAGAAA+TGG | + | chr5_4:43947493-43947512 | Msa0852720:CDS | 15.0% |
| !!! | TACTATTTTGAAAAATTGTA+TGG | + | chr5_4:43947620-43947639 | Msa0852720:CDS | 15.0% |
| !! | TAGAACATCATTATATAAAA+CGG | + | chr5_4:43947814-43947833 | Msa0852720:CDS | 15.0% |
| !! | AAACATTAAAGTTAGTAAAT+TGG | - | chr5_4:43948316-43948335 | None:intergenic | 15.0% |
| !! | TGTATTGAAAATAAAACTGA+TGG | - | chr5_4:43946021-43946040 | None:intergenic | 20.0% |
| !!! | GTTTGATTTTATTACAGTTT+TGG | + | chr5_4:43946079-43946098 | Msa0852720:intron | 20.0% |
| !! | GATAATAATTGTGTATTGAA+AGG | - | chr5_4:43946110-43946129 | None:intergenic | 20.0% |
| !!! | AAACATATTCTAAAACTGAA+AGG | - | chr5_4:43946136-43946155 | None:intergenic | 20.0% |
| !!! | TTTCAGTTTTAGAATATGTT+TGG | + | chr5_4:43946135-43946154 | Msa0852720:intron | 20.0% |
| !! | AAATAAATAATCAATGCAAG+AGG | - | chr5_4:43946463-43946482 | None:intergenic | 20.0% |
| !!! | TTGTTGATCATGTTTATTTT+AGG | + | chr5_4:43947050-43947069 | Msa0852720:CDS | 20.0% |
| !! | TATGAATCTTATTACTTGTT+AGG | + | chr5_4:43947384-43947403 | Msa0852720:intron | 20.0% |
| !! | TTCTTTAATCAAATTATTGG+AGG | - | chr5_4:43947492-43947511 | None:intergenic | 20.0% |
| !! | TGCAGAAATTTGATAAATAT+TGG | + | chr5_4:43947528-43947547 | Msa0852720:CDS | 20.0% |
| !! | ATTAAAGTTAGTAAATTGGA+AGG | - | chr5_4:43948312-43948331 | None:intergenic | 20.0% |
| !!! | GATATTTTGATTCTGTTATT+TGG | + | chr5_4:43948563-43948582 | Msa0852720:three_prime_UTR | 20.0% |
| ! | ATTCATTTCATTCACAGTTT+GGG | + | chr5_4:43945875-43945894 | Msa0852720:intron | 25.0% |
| ! | TTTGTATATGAATTGTTTGC+AGG | + | chr5_4:43945922-43945941 | Msa0852720:intron | 25.0% |
| !! | TGATGGTATTTTATGAGAAA+GGG | - | chr5_4:43946004-43946023 | None:intergenic | 25.0% |
| ! | AATTATTACCTATGAGTTGT+TGG | + | chr5_4:43946162-43946181 | Msa0852720:intron | 25.0% |
| ! | AGAAGTAATAACATGTGAAT+TGG | - | chr5_4:43946424-43946443 | None:intergenic | 25.0% |
| ! | TTATCATCTGTGATATCAAT+AGG | - | chr5_4:43946695-43946714 | None:intergenic | 25.0% |
| ! | TAAAGTTAATGGAGAAGATA+AGG | + | chr5_4:43946784-43946803 | Msa0852720:CDS | 25.0% |
| ! | ATGAGAACAAGAAAGTTAAA+GGG | + | chr5_4:43946906-43946925 | Msa0852720:CDS | 25.0% |
| ! | CTTATAATGCTGAAAATTCA+AGG | + | chr5_4:43946981-43947000 | Msa0852720:CDS | 25.0% |
| !! | TTTTAATATCTCCTTCTTGA+TGG | - | chr5_4:43947125-43947144 | None:intergenic | 25.0% |
| !! | TAATCAAAAAAAGGGGTATA+TGG | + | chr5_4:43947234-43947253 | Msa0852720:CDS | 25.0% |
| !! | ATTACTTGTTAGGTTCAAAT+TGG | + | chr5_4:43947394-43947413 | Msa0852720:intron | 25.0% |
| ! | AATTTGATCTTACAAATCTC+GGG | - | chr5_4:43947446-43947465 | None:intergenic | 25.0% |
| ! | CAATTTGATCTTACAAATCT+CGG | - | chr5_4:43947447-43947466 | None:intergenic | 25.0% |
| ! | ATTATGATGCATATGTCAAA+AGG | + | chr5_4:43947780-43947799 | Msa0852720:CDS | 25.0% |
| ! | ATCATTATATAAAACGGAGT+TGG | + | chr5_4:43947820-43947839 | Msa0852720:CDS | 25.0% |
| ! | CTTTCAATTTACATATCTTG+AGG | + | chr5_4:43948119-43948138 | Msa0852720:intron | 25.0% |
| ! | GGAAGGTAGTATTAAATAAA+TGG | - | chr5_4:43948295-43948314 | None:intergenic | 25.0% |
| !!! | AATTTTGATGAACAATGATG+TGG | + | chr5_4:43948484-43948503 | Msa0852720:three_prime_UTR | 25.0% |
| ! | TATTGATGAATGTGATCTTA+AGG | + | chr5_4:43948586-43948605 | Msa0852720:three_prime_UTR | 25.0% |
| !!! | ATGTGGTTTTTTCTGTTATT+TGG | + | chr5_4:43948613-43948632 | Msa0852720:three_prime_UTR | 25.0% |
| !!! | TGATGCTGTTTTTTCATTTT+GGG | + | chr5_4:43948658-43948677 | Msa0852720:three_prime_UTR | 25.0% |
| ACAAAGCTGGTATTTCAATA+TGG | + | chr5_4:43945792-43945811 | Msa0852720:intron | 30.0% | |
| GATTCATTTCATTCACAGTT+TGG | + | chr5_4:43945874-43945893 | Msa0852720:intron | 30.0% | |
| TGTTTGCAGGTAATTCAAAA+AGG | + | chr5_4:43945935-43945954 | Msa0852720:intron | 30.0% | |
| GTTTGCAGGTAATTCAAAAA+GGG | + | chr5_4:43945936-43945955 | Msa0852720:intron | 30.0% | |
| AATTCTGTGTTAGACATGTT+TGG | - | chr5_4:43945972-43945991 | None:intergenic | 30.0% | |
| AAACATGTCTAACACAGAAT+TGG | + | chr5_4:43945971-43945990 | Msa0852720:exon | 30.0% | |
| ! | CTGATGGTATTTTATGAGAA+AGG | - | chr5_4:43946005-43946024 | None:intergenic | 30.0% |
| ! | CATATTTGGATTTTCAACAC+CGG | + | chr5_4:43946052-43946071 | Msa0852720:intron | 30.0% |
| GTAATAAAATCAAACCGATC+CGG | - | chr5_4:43946074-43946093 | None:intergenic | 30.0% | |
| CTATGCCTAAATAAGTTCAA+CGG | - | chr5_4:43946257-43946276 | None:intergenic | 30.0% | |
| GAAAAATCCAAAAATGCAAG+AGG | - | chr5_4:43946341-43946360 | None:intergenic | 30.0% | |
| ATGTTATTACTTCTCTTGCT+TGG | + | chr5_4:43946430-43946449 | Msa0852720:intron | 30.0% | |
| AATTTGAACTCAACAGGAAA+TGG | + | chr5_4:43946529-43946548 | Msa0852720:intron | 30.0% | |
| ! | AGATGATAATACAGAAGCAT+TGG | + | chr5_4:43946706-43946725 | Msa0852720:CDS | 30.0% |
| TTCACGAAGCTTAAAGTTAA+TGG | + | chr5_4:43946773-43946792 | Msa0852720:CDS | 30.0% | |
| CAAGAAGTTTCTTGCAATAA+TGG | - | chr5_4:43946817-43946836 | None:intergenic | 30.0% | |
| CATTATTGCAAGAAACTTCT+TGG | + | chr5_4:43946815-43946834 | Msa0852720:CDS | 30.0% | |
| AAAACACTTGCTTCATCATA+TGG | + | chr5_4:43946859-43946878 | Msa0852720:CDS | 30.0% | |
| CATGAGAACAAGAAAGTTAA+AGG | + | chr5_4:43946905-43946924 | Msa0852720:CDS | 30.0% | |
| TTCATGCATAATTATTGCAG+AGG | - | chr5_4:43947017-43947036 | None:intergenic | 30.0% | |
| ACATGATCAACAATTGAAAG+TGG | - | chr5_4:43947043-43947062 | None:intergenic | 30.0% | |
| ! | TAAAAGTGTATGAGTTTGAG+AGG | + | chr5_4:43947140-43947159 | Msa0852720:CDS | 30.0% |
| ! | TGTTTGATAGTCTTCAATCA+AGG | + | chr5_4:43947179-43947198 | Msa0852720:CDS | 30.0% |
| ! | GTTTGATAGTCTTCAATCAA+GGG | + | chr5_4:43947180-43947199 | Msa0852720:CDS | 30.0% |
| ACCTCAGGTAATCAAAAAAA+GGG | + | chr5_4:43947226-43947245 | Msa0852720:CDS | 30.0% | |
| GTTACTGCACATTATATTGA+TGG | + | chr5_4:43947259-43947278 | Msa0852720:CDS | 30.0% | |
| ! | CACATTATATTGATGGATCT+TGG | + | chr5_4:43947266-43947285 | Msa0852720:CDS | 30.0% |
| AATCTCGGGAAAAAACATAT+TGG | - | chr5_4:43947432-43947451 | None:intergenic | 30.0% | |
| CGAGATTTGTAAGATCAAAT+TGG | + | chr5_4:43947445-43947464 | Msa0852720:CDS | 30.0% | |
| TCAAATTGGCAATATCTGAT+TGG | + | chr5_4:43947459-43947478 | Msa0852720:CDS | 30.0% | |
| TTTGGATCCAAGATACAAAA+TGG | + | chr5_4:43947586-43947605 | Msa0852720:CDS | 30.0% | |
| ATATCAAAATTGGCACTTCT+AGG | - | chr5_4:43947872-43947891 | None:intergenic | 30.0% | |
| CCACATCAGAATATCAAAAT+TGG | - | chr5_4:43947882-43947901 | None:intergenic | 30.0% | |
| !! | CCAATTTTGATATTCTGATG+TGG | + | chr5_4:43947879-43947898 | Msa0852720:CDS | 30.0% |
| !! | ATTTTGATATTCTGATGTGG+TGG | + | chr5_4:43947882-43947901 | Msa0852720:CDS | 30.0% |
| TTTGCAATTTCTTGCAATGT+TGG | - | chr5_4:43947929-43947948 | None:intergenic | 30.0% | |
| ACTGCATTTGCATTATTTAC+AGG | + | chr5_4:43948187-43948206 | Msa0852720:intron | 30.0% | |
| AAGATCTTACATTCATCATC+AGG | - | chr5_4:43948268-43948287 | None:intergenic | 30.0% | |
| ! | ATAGGTGAAATATTGACTAG+TGG | + | chr5_4:43948362-43948381 | Msa0852720:intron | 30.0% |
| ACAATGATGTGGTTTGAATT+TGG | + | chr5_4:43948495-43948514 | Msa0852720:three_prime_UTR | 30.0% | |
| !!! | CTGATGCTGTTTTTTCATTT+TGG | + | chr5_4:43948657-43948676 | Msa0852720:three_prime_UTR | 30.0% |
| TCACTCCGTTGAACTTATTT+AGG | + | chr5_4:43946249-43946268 | Msa0852720:intron | 35.0% | |
| !!! | CATGAACCAAGCATTTTTTG+AGG | - | chr5_4:43946317-43946336 | None:intergenic | 35.0% |
| ! | TTCATGTCCTCTTGCATTTT+TGG | + | chr5_4:43946331-43946350 | Msa0852720:intron | 35.0% |
| CATGTGAATTTGAACTCAAC+AGG | + | chr5_4:43946523-43946542 | Msa0852720:intron | 35.0% | |
| GAAATGGACATGGATAATGT+TGG | + | chr5_4:43946545-43946564 | Msa0852720:CDS | 35.0% | |
| !! | GGATAATGTTGGTAATTCTC+AGG | + | chr5_4:43946556-43946575 | Msa0852720:CDS | 35.0% |
| ! | TCTAATGTTTCATTTGGTGG+TGG | - | chr5_4:43946668-43946687 | None:intergenic | 35.0% |
| GCTTCTAATGTTTCATTTGG+TGG | - | chr5_4:43946671-43946690 | None:intergenic | 35.0% | |
| GGTGCTTCTAATGTTTCATT+TGG | - | chr5_4:43946674-43946693 | None:intergenic | 35.0% | |
| TATTGCAAGAAACTTCTTGG+TGG | + | chr5_4:43946818-43946837 | Msa0852720:CDS | 35.0% | |
| CTTGGTGGAAAATCAACTAA+TGG | + | chr5_4:43946833-43946852 | Msa0852720:CDS | 35.0% | |
| CAAACATTTCTTGTGCCAAA+GGG | + | chr5_4:43946929-43946948 | Msa0852720:CDS | 35.0% | |
| TTCCTAAGTCTTTCTTTCCT+TGG | - | chr5_4:43946955-43946974 | None:intergenic | 35.0% | |
| AACTTGAAACAATGGTTGCA+GGG | - | chr5_4:43947089-43947108 | None:intergenic | 35.0% | |
| CTACAAGGAACTTGAAACAA+TGG | - | chr5_4:43947097-43947116 | None:intergenic | 35.0% | |
| !! | TTCTTGATGGTGTTTCTACA+AGG | - | chr5_4:43947112-43947131 | None:intergenic | 35.0% |
| TTGTAGAAACACCATCAAGA+AGG | + | chr5_4:43947111-43947130 | Msa0852720:CDS | 35.0% | |
| GACCTCAGGTAATCAAAAAA+AGG | + | chr5_4:43947225-43947244 | Msa0852720:CDS | 35.0% | |
| CCTCAGGTAATCAAAAAAAG+GGG | + | chr5_4:43947227-43947246 | Msa0852720:CDS | 35.0% | |
| TAAAGAAATGGCTACGAAGA+TGG | + | chr5_4:43947505-43947524 | Msa0852720:CDS | 35.0% | |
| ! | AGCAACTCCATTTTGTATCT+TGG | - | chr5_4:43947596-43947615 | None:intergenic | 35.0% |
| AAGTTCAATCAAGACACTTG+TGG | + | chr5_4:43947713-43947732 | Msa0852720:CDS | 35.0% | |
| TCAGAAGCTACTGAAGTAAT+AGG | - | chr5_4:43947968-43947987 | None:intergenic | 35.0% | |
| TCAGCTTCACTCTTCAAAAT+GGG | - | chr5_4:43948396-43948415 | None:intergenic | 35.0% | |
| TTCAGCTTCACTCTTCAAAA+TGG | - | chr5_4:43948397-43948416 | None:intergenic | 35.0% | |
| ! | GACTGAAGACAACTTTTATG+TGG | + | chr5_4:43948440-43948459 | Msa0852720:three_prime_UTR | 35.0% |
| !! | GCTATGTTGTTTCGATACTT+TGG | + | chr5_4:43948517-43948536 | Msa0852720:three_prime_UTR | 35.0% |
| GTTTCGATACTTTGGATCAT+AGG | + | chr5_4:43948525-43948544 | Msa0852720:three_prime_UTR | 35.0% | |
| TGTGATCTTAAGGAATGATG+TGG | + | chr5_4:43948596-43948615 | Msa0852720:three_prime_UTR | 35.0% | |
| ! | TTGGATTTTCAACACCGGAT+CGG | + | chr5_4:43946057-43946076 | Msa0852720:intron | 40.0% |
| TACCTATGAGTTGTTGGTGT+TGG | + | chr5_4:43946168-43946187 | Msa0852720:intron | 40.0% | |
| AACATGGGATTGAAAGCAAG+AGG | - | chr5_4:43946212-43946231 | None:intergenic | 40.0% | |
| AATCCCATGTTCGTAATGCT+TGG | + | chr5_4:43946221-43946240 | Msa0852720:intron | 40.0% | |
| GAACCAAGCATTACGAACAT+GGG | - | chr5_4:43946227-43946246 | None:intergenic | 40.0% | |
| AGAACCAAGCATTACGAACA+TGG | - | chr5_4:43946228-43946247 | None:intergenic | 40.0% | |
| AACTCAACAGGAAATGGACA+TGG | + | chr5_4:43946535-43946554 | Msa0852720:intron | 40.0% | |
| GCAAACATTTCTTGTGCCAA+AGG | + | chr5_4:43946928-43946947 | Msa0852720:CDS | 40.0% | |
| GAACTTGAAACAATGGTTGC+AGG | - | chr5_4:43947090-43947109 | None:intergenic | 40.0% | |
| TGATAGTCTTCAATCAAGGG+TGG | + | chr5_4:43947183-43947202 | Msa0852720:CDS | 40.0% | |
| !!! | CCCCTTTTTTTGATTACCTG+AGG | - | chr5_4:43947230-43947249 | None:intergenic | 40.0% |
| ATTTACAGAGTCGCATCTTG+AGG | + | chr5_4:43947290-43947309 | Msa0852720:CDS | 40.0% | |
| ! | TAAATATTGGAGTGTCACCC+AGG | + | chr5_4:43947541-43947560 | Msa0852720:CDS | 40.0% |
| ACTCTGTTGAGCAAGTTAAG+AGG | + | chr5_4:43947648-43947667 | Msa0852720:CDS | 40.0% | |
| GCTAATTCTGTGGCTAATGA+TGG | + | chr5_4:43947749-43947768 | Msa0852720:CDS | 40.0% | |
| AACGGAGTTGGATCATTATC+TGG | + | chr5_4:43947832-43947851 | Msa0852720:CDS | 40.0% | |
| ACGGAGTTGGATCATTATCT+GGG | + | chr5_4:43947833-43947852 | Msa0852720:CDS | 40.0% | |
| GAATCAGCATTCAGTACAAG+TGG | + | chr5_4:43947986-43948005 | Msa0852720:CDS | 40.0% | |
| CTTTGATGTGTGCTAGAAGT+TGG | + | chr5_4:43948059-43948078 | Msa0852720:CDS | 40.0% | |
| CTATGGAGCAAGGAGAATAA+TGG | + | chr5_4:43948082-43948101 | Msa0852720:CDS | 40.0% | |
| AAGAGTGAAGCTGAAGATGT+AGG | + | chr5_4:43948402-43948421 | Msa0852720:exon | 40.0% | |
| GACCAACACCAACAACTCAT+AGG | - | chr5_4:43946173-43946192 | None:intergenic | 45.0% | |
| AAGAGGACATGACTCCATGA+GGG | - | chr5_4:43946195-43946214 | None:intergenic | 45.0% | |
| TGGGGTCCTCAAAAAATGCT+TGG | + | chr5_4:43946308-43946327 | Msa0852720:intron | 45.0% | |
| AGTGCACACCAAACTACTAC+TGG | + | chr5_4:43946599-43946618 | Msa0852720:CDS | 45.0% | |
| TAGTCTGGCCAGTAGTAGTT+TGG | - | chr5_4:43946610-43946629 | None:intergenic | 45.0% | |
| !! | ACAGAAGCATTGGCAGAAAC+AGG | + | chr5_4:43946716-43946735 | Msa0852720:CDS | 45.0% |
| AAACAGGTAACAGCAGACGT+CGG | + | chr5_4:43946732-43946751 | Msa0852720:CDS | 45.0% | |
| TCTTTCTTTCCTTGGCCCTT+TGG | - | chr5_4:43946947-43946966 | None:intergenic | 45.0% | |
| GGCCAAGGAAAGAAAGACTT+AGG | + | chr5_4:43946950-43946969 | Msa0852720:CDS | 45.0% | |
| TGGCCATTACATCAGACATG+TGG | + | chr5_4:43947203-43947222 | Msa0852720:CDS | 45.0% | |
| GGTCCACATGTCTGATGTAA+TGG | - | chr5_4:43947209-43947228 | None:intergenic | 45.0% | |
| AGTGTCACCCAGGATATGAT+GGG | + | chr5_4:43947551-43947570 | Msa0852720:CDS | 45.0% | |
| AGCAACTCCCATCATATCCT+GGG | - | chr5_4:43947561-43947580 | None:intergenic | 45.0% | |
| TAGCAACTCCCATCATATCC+TGG | - | chr5_4:43947562-43947581 | None:intergenic | 45.0% | |
| ! | GATGGGAGTTGCTACTGTTT+TGG | + | chr5_4:43947568-43947587 | Msa0852720:CDS | 45.0% |
| AGACACTTGTGGTGAATCGT+CGG | + | chr5_4:43947724-43947743 | Msa0852720:CDS | 45.0% | |
| ATCGTCGGAAGCTAATTCTG+TGG | + | chr5_4:43947739-43947758 | Msa0852720:CDS | 45.0% | |
| ! | CTGATGTGGTGGAAGTTGAA+TGG | + | chr5_4:43947893-43947912 | Msa0852720:CDS | 45.0% |
| CAATGAAGTCGACTACGATG+CGG | - | chr5_4:43948025-43948044 | None:intergenic | 45.0% | |
| TCGACTTCATTGGACAACCT+TGG | + | chr5_4:43948033-43948052 | Msa0852720:CDS | 45.0% | |
| ACTTCATTGGACAACCTTGG+AGG | + | chr5_4:43948036-43948055 | Msa0852720:CDS | 45.0% | |
| TGTGTGCTAGAAGTTGGCTA+TGG | + | chr5_4:43948065-43948084 | Msa0852720:CDS | 45.0% | |
| TAGAAGTTGGCTATGGAGCA+AGG | + | chr5_4:43948072-43948091 | Msa0852720:CDS | 45.0% | |
| CTGAAGATGTAGGTAGCATC+TGG | + | chr5_4:43948412-43948431 | Msa0852720:three_prime_UTR | 45.0% | |
| !! | TTTGGGACAGCTTTGAGTGT+TGG | + | chr5_4:43948675-43948694 | Msa0852720:three_prime_UTR | 45.0% |
| !! | TTGTTGGTGTTGGTCCCTCA+TGG | + | chr5_4:43946178-43946197 | Msa0852720:intron | 50.0% |
| CAAGAGGACATGACTCCATG+AGG | - | chr5_4:43946196-43946215 | None:intergenic | 50.0% | |
| ACTACTGGCCAGACTACTAC+TGG | + | chr5_4:43946614-43946633 | Msa0852720:CDS | 50.0% | |
| GAGTGAGACCAGTAGTAGTC+TGG | - | chr5_4:43946625-43946644 | None:intergenic | 50.0% | |
| TGGTGGTTGAGATGATGAGG+GGG | - | chr5_4:43946651-43946670 | None:intergenic | 50.0% | |
| GTGGTGGTTGAGATGATGAG+GGG | - | chr5_4:43946652-43946671 | None:intergenic | 50.0% | |
| ! | GGTGGTGGTTGAGATGATGA+GGG | - | chr5_4:43946653-43946672 | None:intergenic | 50.0% |
| !! | TGGTGGTGGTTGAGATGATG+AGG | - | chr5_4:43946654-43946673 | None:intergenic | 50.0% |
| TAACAGCAGACGTCGGAGTA+AGG | + | chr5_4:43946739-43946758 | Msa0852720:CDS | 50.0% | |
| CAGACGTCGGAGTAAGGTAT+GGG | + | chr5_4:43946745-43946764 | Msa0852720:CDS | 50.0% | |
| TTTCTTGTGCCAAAGGGCCA+AGG | + | chr5_4:43946935-43946954 | Msa0852720:CDS | 50.0% | |
| ACATCAGACATGTGGACCTC+AGG | + | chr5_4:43947211-43947230 | Msa0852720:CDS | 50.0% | |
| GAGTGTCACCCAGGATATGA+TGG | + | chr5_4:43947550-43947569 | Msa0852720:CDS | 50.0% | |
| ! | CGCATCGTAGTCGACTTCAT+TGG | + | chr5_4:43948023-43948042 | Msa0852720:CDS | 50.0% |
| AGCACACATCAAAGCCTCCA+AGG | - | chr5_4:43948053-43948072 | None:intergenic | 50.0% | |
| !! | CGCAGTGCTGCTTACAAAGC+TGG | + | chr5_4:43945779-43945798 | Msa0852720:five_prime_UTR | 55.0% |
| GCAGACGTCGGAGTAAGGTA+TGG | + | chr5_4:43946744-43946763 | Msa0852720:CDS | 55.0% | |
| CATTCCTCCACTCCAGCCGA+CGG | + | chr5_4:43945743-43945762 | Msa0852720:five_prime_UTR | 60.0% | |
| !! | GCGTGAGAGAGAAGTGCCGT+CGG | - | chr5_4:43945762-43945781 | None:intergenic | 60.0% |
| !! | AGAAGTGCCGTCGGCTGGAG+TGG | - | chr5_4:43945753-43945772 | None:intergenic | 65.0% |
| !! | GAGAGAGAAGTGCCGTCGGC+TGG | - | chr5_4:43945758-43945777 | None:intergenic | 65.0% |
| ! | AGTGCCGTCGGCTGGAGTGG+AGG | - | chr5_4:43945750-43945769 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 43945727 | 43948725 | 43945727 | ID=Msa0852720;Name=Msa0852720 |
| chr5_4 | mRNA | 43945727 | 43948725 | 43945727 | ID=Msa0852720-mRNA-1;Parent=Msa0852720;Name=Msa0852720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=105|1|1|1|0.6|0.5|6|316|531 |
| chr5_4 | exon | 43945727 | 43945800 | 43945727 | ID=Msa0852720-mRNA-1:exon:13883;Parent=Msa0852720-mRNA-1 |
| chr5_4 | exon | 43945944 | 43945992 | 43945944 | ID=Msa0852720-mRNA-1:exon:13884;Parent=Msa0852720-mRNA-1 |
| chr5_4 | exon | 43946545 | 43947311 | 43946545 | ID=Msa0852720-mRNA-1:exon:13885;Parent=Msa0852720-mRNA-1 |
| chr5_4 | exon | 43947406 | 43948103 | 43947406 | ID=Msa0852720-mRNA-1:exon:13886;Parent=Msa0852720-mRNA-1 |
| chr5_4 | exon | 43948209 | 43948277 | 43948209 | ID=Msa0852720-mRNA-1:exon:13887;Parent=Msa0852720-mRNA-1 |
| chr5_4 | exon | 43948366 | 43948725 | 43948366 | ID=Msa0852720-mRNA-1:exon:13888;Parent=Msa0852720-mRNA-1 |
| chr5_4 | five_prime_UTR | 43945727 | 43945800 | 43945727 | ID=Msa0852720-mRNA-1:five_prime_utr;Parent=Msa0852720-mRNA-1 |
| chr5_4 | five_prime_UTR | 43945944 | 43945974 | 43945944 | ID=Msa0852720-mRNA-1:five_prime_utr;Parent=Msa0852720-mRNA-1 |
| chr5_4 | CDS | 43945975 | 43945992 | 43945975 | ID=Msa0852720-mRNA-1:cds;Parent=Msa0852720-mRNA-1 |
| chr5_4 | CDS | 43946545 | 43947311 | 43946545 | ID=Msa0852720-mRNA-1:cds;Parent=Msa0852720-mRNA-1 |
| chr5_4 | CDS | 43947406 | 43948103 | 43947406 | ID=Msa0852720-mRNA-1:cds;Parent=Msa0852720-mRNA-1 |
| chr5_4 | CDS | 43948209 | 43948277 | 43948209 | ID=Msa0852720-mRNA-1:cds;Parent=Msa0852720-mRNA-1 |
| chr5_4 | CDS | 43948366 | 43948409 | 43948366 | ID=Msa0852720-mRNA-1:cds;Parent=Msa0852720-mRNA-1 |
| chr5_4 | three_prime_UTR | 43948410 | 43948725 | 43948410 | ID=Msa0852720-mRNA-1:three_prime_utr;Parent=Msa0852720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
